Citrus Sinensis ID: 046196
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1436 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.986 | 0.727 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.986 | 0.995 | 0.693 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.997 | 0.983 | 0.703 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.997 | 0.983 | 0.702 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.985 | 0.979 | 0.704 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.992 | 0.982 | 0.691 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.988 | 0.969 | 0.697 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.972 | 0.951 | 0.694 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.985 | 0.981 | 0.703 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.987 | 0.987 | 0.697 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2185 bits (5661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1037/1425 (72%), Positives = 1211/1425 (84%), Gaps = 11/1425 (0%)
Query: 12 SARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQRGMLTEDEGQAR 71
S R S+SIWRNN +++F+RSSR++ DD+EAL WAA+EKLPT+ R+++G+L +G A
Sbjct: 21 SLRANSNSIWRNNGVEIFSRSSRDE--DDEEALKWAALEKLPTFDRLRKGLLFGSQGAAA 78
Query: 72 EVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAE 131
EVDI +LGF ER+NL+ERL+K+A+EDNEKFLLKLK+RI+RVG+D+PTIEVR+EHLN++A+
Sbjct: 79 EVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDAD 138
Query: 132 AYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSS 191
AY+GSR+LPT N N +E LN LH+L SRK+ LTIL D+SGIIKP R+TLLLGPPSS
Sbjct: 139 AYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSS 198
Query: 192 GKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAF 251
GKTTLLLALAGKL LK +G+V+YNGH + EFVPQRT+AYISQ+DLHIGEMTVRETL F
Sbjct: 199 GKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEF 258
Query: 252 SARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE 311
SARCQGVG R+E+L ELSRREKAANIKPD DID+ MKAA+ EGQE NVVTDYVLKILGL+
Sbjct: 259 SARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLD 318
Query: 312 VCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQS 371
+CADTMVGD+M+RGISGGQ+KR+TTGEMLVGP++ALFMDEISTGLDSSTTY IVNSLRQS
Sbjct: 319 ICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQS 378
Query: 372 IHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGV 431
+ IL GTAVISLLQPAPETY LFDD+ILLSDG IVYQGPR++VLEFFE MGFKCP+RKGV
Sbjct: 379 VQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGV 438
Query: 432 ADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHP 491
ADFLQEVTS+KDQ+QYW+ ++EPY F+T+KEF+E +QSFH+G+KLGDELATPFDK+K HP
Sbjct: 439 ADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHP 498
Query: 492 AALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRS 551
AALT +KYG KKELLK C RE LLMKRNSFVY FK Q+ A + MTLF RTEM R
Sbjct: 499 AALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRD 558
Query: 552 TVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKI 611
T +DGGIY GALFF VI IMFNG SEL+MTI KLPVFYKQRD LFFP+WAY++P+WILKI
Sbjct: 559 TTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKI 618
Query: 612 PITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANT 671
P+T +EVG+WV +TYYV+GF+ NI RF+KQ+ LL+ VNQ ASG+FR +GA+GR + VA+T
Sbjct: 619 PVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVAST 678
Query: 672 FGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPPNST 731
FGSFA L LGGF+LSRDDVK WW+WGYW SPMMY N++ VNEF GK W H+ P
Sbjct: 679 FGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGN 738
Query: 732 EPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEAL 791
E LG ++KSRG FP AYWYWIGVGAL+G+ ++FNF +++AL YL+PF KPQA+L E+
Sbjct: 739 ETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGE 798
Query: 792 AKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMP 851
+N E+SS + S+ G S +E+ QN K+GM+LPFEPHSITFDD+ Y++DMP
Sbjct: 799 NAENG-------EVSSQITSTDGG-DSISES-QNNKKGMVLPFEPHSITFDDVVYSVDMP 849
Query: 852 QEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSIT 911
QEMK QG +DRL LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY+ G I
Sbjct: 850 QEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIK 909
Query: 912 ISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVME 971
ISGYPK QETFARISGYCEQ DIHSP+VTVYESLVYSAWLRLP +VD TRKMFV+EVME
Sbjct: 910 ISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVME 969
Query: 972 LVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
LVEL P+R ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 970 LVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1029
Query: 1032 TVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGID 1091
TVRNTVDTGRTVVCTIHQPSIDIF+AFDEL LMKRGG+EIYVGPLGRH LIKYFE
Sbjct: 1030 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNP 1089
Query: 1092 GVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKN 1151
GV KIKEGYNPATWMLEVT AQE LGI+F +VYKNS+LY+ NK +I EL +P PGSK+
Sbjct: 1090 GVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKD 1149
Query: 1152 LYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRAN 1211
L+F+T+YSQSF+TQC+ACLWKQH SYWRNP YTAVR FTTFIAL+FGT+FWD+G+K +
Sbjct: 1150 LHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSK 1209
Query: 1212 RQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIEL 1271
QDL NAMGSMYAA+LFLGVQNA+SVQPVVA+ERTVFYRERAAGMYSA+PYAFGQV IE+
Sbjct: 1210 SQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEI 1269
Query: 1272 PHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAI 1331
P+IF+Q+V YG+IVYAMIGF+W V KF WYL M+ T LYFT YGMM VAVTPN N+A+I
Sbjct: 1270 PYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASI 1329
Query: 1332 IASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDTFDSGQKV 1391
+A+ FY +WNLFSGFIIPRPRMP+WWRWY W PV+WTLYGLVASQFGD+ + V
Sbjct: 1330 VAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSDNETV 1389
Query: 1392 GDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436
F++ YFG+ HD LGVVA V V +F FTFA++IKAFNFQ R
Sbjct: 1390 EQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2124 bits (5504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 996/1437 (69%), Positives = 1193/1437 (83%), Gaps = 20/1437 (1%)
Query: 4 GQASFRISSARLGSSSIWRNNT-LDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQRGM 62
G + + S++ +SS+W+ ++ ++F+RSSRE+ DD+EAL WAA+EKLPT+ R+++G+
Sbjct: 3 GTSFHQASNSMRRNSSVWKKDSGREIFSRSSREE--DDEEALRWAALEKLPTFDRLRKGI 60
Query: 63 LTEDE--GQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIE 120
LT G E+DI+ LGF + + L+ERL+K+ ++++EK L KLK RI+RVG+D+PTIE
Sbjct: 61 LTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIE 120
Query: 121 VRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQ 180
VRF+HL VEAE ++G RALPT N +N + FLN LH++P+RKK TIL+DVSGI+KP
Sbjct: 121 VRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPG 180
Query: 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI 240
R+ LLLGPPSSGKTTLLLALAGKL ++LK +GRVTYNGHGM EFVPQRT+AYI QND+HI
Sbjct: 181 RMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHI 240
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
GEMTVRET A++AR QGVG RY++L EL+RREK ANIKPDPDID+ MKA S G++ NV+
Sbjct: 241 GEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVM 300
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
TDY+LKILGLEVCADTMVGD+MLRGISGGQ+KR+TTGEMLVGP+RALFMDEISTGLDSST
Sbjct: 301 TDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSST 360
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
TYQIVNSLR +HI NGTA+ISLLQPAPET+ LFDD+IL+++G+I+Y+GPR++V+EFFE
Sbjct: 361 TYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFET 420
Query: 421 MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDEL 480
MGFKCP RKGVADFLQEVTS+KDQ QYWA +DEPY F+ +EF+E FQSFH+G+++GDEL
Sbjct: 421 MGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDEL 480
Query: 481 ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAM 540
A PFDK+KSHPAALTTKKYG KEL+K F+REYLLMKRNSFVY+FK Q+ A + M
Sbjct: 481 ALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTM 540
Query: 541 TLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAW 600
TLF RTEM + T DG +Y GALFF ++ +MFNG SELSMTI KLPVFYKQRD LF+PAW
Sbjct: 541 TLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAW 600
Query: 601 AYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMG 660
YSLP W+LKIPI+F+E + F+TYYV+GF+ N+ R KQY LL+ +NQ AS LF+++
Sbjct: 601 VYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVA 660
Query: 661 ALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLG 720
ALGRN+IVANTFG+FA L LGG +LSRDD+KKWW+WGYW SP+MYGQNA+ NEF G
Sbjct: 661 ALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFG 720
Query: 721 KSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFG 780
SW NS+E LGV LKSRG P+AYWYWIG GALLG+V+LFNF FT+AL +L+ G
Sbjct: 721 HSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLG 780
Query: 781 KPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSIT 840
KPQA+++ EEP + +QS+ E EA N+KRGM+LPFEPHSIT
Sbjct: 781 KPQAVIA------------EEPASDETELQSARSE--GVVEAGANKKRGMVLPFEPHSIT 826
Query: 841 FDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900
FD++ Y++DMPQEM QG +DRL LKGV+GAFRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 827 FDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGR 886
Query: 901 KTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSD 960
KTGGY+ G+ITISGYPKNQ+TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP EVD +
Sbjct: 887 KTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKN 946
Query: 961 TRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020
RK+F+EEVMELVEL P+R+ALVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 947 KRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1006
Query: 1021 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHC 1080
LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDEL L+KRGGEEIYVGPLG
Sbjct: 1007 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHES 1066
Query: 1081 SQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIK 1140
+ LI YFE I G+ KI EGYNPATWMLEV+T +QEAALG++FA+VYKNSELYK NKE+IK
Sbjct: 1067 THLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIK 1126
Query: 1141 ELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGT 1200
ELS P PGSK+LYF T+YSQSF TQCMA LWKQH SYWRNPPYTAVR FT IALMFGT
Sbjct: 1127 ELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGT 1186
Query: 1201 IFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSAL 1260
+FWD+G K RQDL NAMGSMY A+LFLG+QNA SVQPVV VERTVFYRE+AAGMYSA+
Sbjct: 1187 MFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAM 1246
Query: 1261 PYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTV 1320
PYAF QV IE+P++ +QA++YG+IVYAMIGF+WT KF WYL FMY +FL FT YGMM V
Sbjct: 1247 PYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAV 1306
Query: 1321 AVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGD 1380
A+TPNH+IA++++SAFY +WNLFSGF+IPRP MP+WW WY W+CPV+WTLYGL+ASQFGD
Sbjct: 1307 AMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGD 1366
Query: 1381 VNDTF-DSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436
+ + DS V F+++++GY LGVVA ++V +LF FA IK+FNFQ R
Sbjct: 1367 ITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2117 bits (5485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1027/1460 (70%), Positives = 1192/1460 (81%), Gaps = 27/1460 (1%)
Query: 1 MDAGQASFRISSARLGSS------SIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPT 54
MDA +++S RLG S S+WR DVF+RSSRE+ DD+EAL WAA+EKLPT
Sbjct: 1 MDAAGEIQKVASMRLGGSMRGDSGSMWRRGD-DVFSRSSREE--DDEEALRWAALEKLPT 57
Query: 55 YLRVQRGML-------TEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKD 107
Y RV+R +L D G VD+ LG ERR L+ERL+++A+EDNEKFLLKLKD
Sbjct: 58 YDRVRRAILPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKD 117
Query: 108 RIERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPL 167
R++RVG+D+PTIEVRFEHL EAE +G+ LPTV NS N LE N L +LP+RK+ +
Sbjct: 118 RVDRVGIDMPTIEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTM 177
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+LHDVSGIIKP+R+TLLLGPP SGKTTLLLALAG+LGKDLK SG+VTYNGHGMEEFVP+
Sbjct: 178 PVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPE 237
Query: 228 RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIM 287
RT+AYISQ+DLHIGEMTVRETLAFSARCQGVG R+++L ELSRREKAANIKPD DID M
Sbjct: 238 RTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFM 297
Query: 288 KAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARAL 347
KAA++ GQE NV TDY+LKILGLE+CADTMVGDEMLRGISGGQRKR+TTGEMLVGPARAL
Sbjct: 298 KAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARAL 357
Query: 348 FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407
FMDEISTGLDSSTT+QIVNSLRQ++HIL GTAVISLLQPAPETY LFDD+ILLSDGQIVY
Sbjct: 358 FMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVY 417
Query: 408 QGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVF 467
QGPRE+VLEFFE MGFKCP+RKGVADFLQEVTS+KDQ QYWA D+PY FVT KEF F
Sbjct: 418 QGPREDVLEFFESMGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAF 477
Query: 468 QSFHIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFF 527
QSFH G+ + +ELA PFDKSKSHPAAL T +YGA KELLKA RE LLMKRNSFVY F
Sbjct: 478 QSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMF 537
Query: 528 KMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPV 587
+ FQ+ + +AMTLF RT+M R +V GGIYMGALFF V+ IMFNGFSEL++T+ KLPV
Sbjct: 538 RTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPV 597
Query: 588 FYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLC 647
F+KQRD LF+PAW+Y++P+WILKIPITFIEVG +VF+TYYV+GF+SN+ F KQY L+L
Sbjct: 598 FFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLA 657
Query: 648 VNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMM 707
+NQ A LFR +G RN+IVAN F SF L +VLGGFIL+R+ VKKWW+WGYW SPMM
Sbjct: 658 INQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMM 717
Query: 708 YGQNALAVNEFLGKSWGHV--PPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLF 765
Y QNA++VNE +G SW + S E LGV +LKSRG+FP A WYWIG GA++G+ +LF
Sbjct: 718 YAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILF 777
Query: 766 NFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEE---PVELSSGV------QSSYGEV 816
N LFT+AL YL P+G + +SEE L +K A E V LSSG + +
Sbjct: 778 NALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDS 837
Query: 817 RSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRP 876
++ + +RGM+LPF P S++FD++RY++DMPQEMKAQG+ DDRLE LKGVSG+FRP
Sbjct: 838 TIVDDDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRP 897
Query: 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS 936
GVLTALMGVSGAGKTTLMDVLAGRKTGGY+ GSI ISGYPK QETFAR+SGYCEQ DIHS
Sbjct: 898 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHS 957
Query: 937 PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996
P VTVYESL++SAWLRLP +VDS+TRKMF+EEVMELVEL +R+ALVGLPGV+GLSTEQR
Sbjct: 958 PQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQR 1017
Query: 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFD 1056
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIF+
Sbjct: 1018 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFE 1077
Query: 1057 AFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEA 1116
AFDEL LMKRGGEEIY GPLG H S+LIKYFE I GV KIK+GYNPATWMLEVTT QE
Sbjct: 1078 AFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQ 1137
Query: 1117 ALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLS 1176
ALG++F+ +YK SELY+ NK +IK+LS P P S +LYF T+YSQS TQCMACLWKQ+LS
Sbjct: 1138 ALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLS 1197
Query: 1177 YWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATS 1236
YWRNPPY AVR FFTT IAL+FGTIFWD+G K QDLFNAMGSMYAA+LF+GV N TS
Sbjct: 1198 YWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTS 1257
Query: 1237 VQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVS 1296
VQPVVAVERTVFYRERAAGMYSA PYAFGQVVIE+P+ +QA +YG+IVYAMIGF+WT +
Sbjct: 1258 VQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAA 1317
Query: 1297 KFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIW 1356
KF WYL FM T LYFT YGMM V +TPN++IA+I++SAFY +WNLFSGF+IPRPR+PIW
Sbjct: 1318 KFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIW 1377
Query: 1357 WRWYCWICPVSWTLYGLVASQFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGL 1416
WRWYCW CPV+WTLYGLV SQFGD+ + G V FV++YFG+ H LG VA V
Sbjct: 1378 WRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAF 1437
Query: 1417 VVLFGFTFAYSIKAFNFQHR 1436
LF F ++I FNFQ R
Sbjct: 1438 AFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2115 bits (5479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1026/1460 (70%), Positives = 1191/1460 (81%), Gaps = 27/1460 (1%)
Query: 1 MDAGQASFRISSARLGSS------SIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPT 54
MDA +++S RLG S S+WR DVF+RSSRE+ DD+EAL WAA+EKLPT
Sbjct: 1 MDAAGEIQKVASMRLGGSMRGDSGSMWRRGD-DVFSRSSREE--DDEEALRWAALEKLPT 57
Query: 55 YLRVQRGML-------TEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKD 107
Y RV+R +L D G VD+ LG ERR L+ERL+++A+EDNEKFLLKLKD
Sbjct: 58 YDRVRRAILPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKD 117
Query: 108 RIERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPL 167
R++RVG+D+PTIEVRFEHL EAE +G+ LPTV NS N LE N L +LP+RK+ +
Sbjct: 118 RVDRVGIDMPTIEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTM 177
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+LHDVSGIIKP+R+TLLLGPP SGKTTLLLALAG+LGKDLK SG+VTYNGHGMEEFVP+
Sbjct: 178 PVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPE 237
Query: 228 RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIM 287
RT+AYISQ+DLHIGEMTVRETLAFSARCQGVG R+++L ELSRREKAANIKPD DID M
Sbjct: 238 RTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFM 297
Query: 288 KAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARAL 347
KAA++ GQE NV TDY+LKILGLE+CADTMVGDEMLRGISGGQRKR+TTGEMLVGPARAL
Sbjct: 298 KAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARAL 357
Query: 348 FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407
FMDEISTGLDSSTT+QIVNSLRQ++HIL GTAVISLLQPAPETY LFDD+ILLSDGQIVY
Sbjct: 358 FMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVY 417
Query: 408 QGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVF 467
QGPRE+VLEFFE GFKCP+RKGVADFLQEVTS+KDQ QYWA D+PY FVT KEF F
Sbjct: 418 QGPREDVLEFFESTGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAF 477
Query: 468 QSFHIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFF 527
QSFH G+ + +ELA PFDKSKSHPAAL T +YGA KELLKA RE LLMKRNSFVY F
Sbjct: 478 QSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMF 537
Query: 528 KMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPV 587
+ FQ+ + +AMTLF RT+M R +V GGIYMGALFF V+ IMFNGFSEL++T+ KLPV
Sbjct: 538 RTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPV 597
Query: 588 FYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLC 647
F+KQRD LF+PAW+Y++P+WILKIPITFIEVG +VF+TYYV+GF+SN+ F KQY L+L
Sbjct: 598 FFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLA 657
Query: 648 VNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMM 707
+NQ A LFR +G RN+IVAN F SF L +VLGGFIL+R+ VKKWW+WGYW SPMM
Sbjct: 658 INQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMM 717
Query: 708 YGQNALAVNEFLGKSWGHV--PPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLF 765
Y QNA++VNE +G SW + S E LGV +LKSRG+FP A WYWIG GA++G+ +LF
Sbjct: 718 YAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILF 777
Query: 766 NFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEE---PVELSSGV------QSSYGEV 816
N LFT+AL YL P+G + +SEE L +K A E V LSSG + +
Sbjct: 778 NALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDS 837
Query: 817 RSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRP 876
++ + +RGM+LPF P S++FD++RY++DMPQEMKAQG+ DDRLE LKGVSG+FRP
Sbjct: 838 TIVDDDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRP 897
Query: 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS 936
GVLTALMGVSGAGKTTLMDVLAGRKTGGY+ GSI ISGYPK QETFAR+SGYCEQ DIHS
Sbjct: 898 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHS 957
Query: 937 PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996
P VTVYESL++SAWLRLP +VDS+TRKMF+EEVMELVEL +R+ALVGLPGV+GLSTEQR
Sbjct: 958 PQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQR 1017
Query: 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFD 1056
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIF+
Sbjct: 1018 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFE 1077
Query: 1057 AFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEA 1116
AFDEL LMKRGGEEIY GPLG H S+LIKYFE I GV KIK+GYNPATWMLEVTT QE
Sbjct: 1078 AFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQ 1137
Query: 1117 ALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLS 1176
ALG++F+ +YK SELY+ NK +IK+LS P P S +LYF T+YSQS TQCMACLWKQ+LS
Sbjct: 1138 ALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLS 1197
Query: 1177 YWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATS 1236
YWRNPPY AVR FFTT IAL+FGTIFWD+G K QDLFNAMGSMYAA+LF+GV N TS
Sbjct: 1198 YWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTS 1257
Query: 1237 VQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVS 1296
VQPVVAVERTVFYRERAAGMYSA PYAFGQVVIE+P+ +QA +YG+IVYAMIGF+WT +
Sbjct: 1258 VQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAA 1317
Query: 1297 KFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIW 1356
KF WYL FM T LYFT YGMM V +TPN++IA+I++SAFY +WNLFSGF+IPRPR+PIW
Sbjct: 1318 KFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIW 1377
Query: 1357 WRWYCWICPVSWTLYGLVASQFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGL 1416
WRWYCW CPV+WTLYGLV SQFGD+ + G V FV++YFG+ H LG VA V
Sbjct: 1378 WRWYCWACPVAWTLYGLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAF 1437
Query: 1417 VVLFGFTFAYSIKAFNFQHR 1436
LF F ++I FNFQ R
Sbjct: 1438 AFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2104 bits (5451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1008/1431 (70%), Positives = 1206/1431 (84%), Gaps = 16/1431 (1%)
Query: 17 SSSIWRNNT--LDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQRGMLTEDEGQAREVD 74
++S WR + D F RS RE+ DD+EAL WAAIEKLPTY R+++G+LT G EVD
Sbjct: 19 TASSWRGTSGRSDAFGRSVREE--DDEEALKWAAIEKLPTYDRMRKGILTA--GGVEEVD 74
Query: 75 IKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYI 134
I LG ERRNLIERL++ AEEDNE+FLLKL+DR+ERVG+D PTIEVRFE+L+++AEAY+
Sbjct: 75 IGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEAYV 134
Query: 135 GSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKT 194
G+R +PT N +N + L+ + ++ S K+P++ILHD+SGII+P R++LLLGPP SGKT
Sbjct: 135 GNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSGKT 194
Query: 195 TLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSAR 254
+LLLALAGKL LK SGRVTYNGH M+EFVPQRTSAYI Q+DLHIGEMTVRETLAFSAR
Sbjct: 195 SLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSAR 254
Query: 255 CQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCA 314
CQGVG RY++L ELSRREK A+IKPDPDID+ MKA S+EGQE +VVTDY+LKILGLE+CA
Sbjct: 255 CQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQE-SVVTDYILKILGLEICA 313
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI 374
DTMVGD M+RGISGGQ+KR+TTGEMLVGPA+ALFMDEISTGLDSSTTYQIVNSLRQS+HI
Sbjct: 314 DTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHI 373
Query: 375 LNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADF 434
L GTA+I+LLQPAPETY+LFDD++LLS+GQIVYQGPREN+LEFFE MGFKCPERKGVADF
Sbjct: 374 LGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADF 433
Query: 435 LQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAAL 494
LQEVTSRKDQ QYW +DEPY +++ +FSE F+ FH+G+ LG EL PFD++++HPAAL
Sbjct: 434 LQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAAL 493
Query: 495 TTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVE 554
TT +YG SK EL KACF+RE+LLMKRNSFVY FK+ Q+ S+ MT+FLRT+MHR +VE
Sbjct: 494 TTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVE 553
Query: 555 DGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPIT 614
DG I++GA+F ++T +FNGF+EL+M+I KLP+FYKQRD LF+P+WAY+LPTW+LKIPI+
Sbjct: 554 DGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPIS 613
Query: 615 FIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGS 674
F+E +W+ MTYYV+GF+ NIERF + Y LL+ ++Q ASGLFRL+ ALGR ++VA+TFGS
Sbjct: 614 FLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGS 673
Query: 675 FANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHV--PPNSTE 732
FA L +LVLGGF++SR+++KKWW+WGYW SP+MY QNA+AVNEFLG SW V P S +
Sbjct: 674 FAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSND 733
Query: 733 PLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALA 792
LGV +LK RG+F +A WYWIGVGALLGY++LFN LF + L++LDP GK QA++SEE L
Sbjct: 734 TLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELR 793
Query: 793 KKNACKTEEPVEL------SSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRY 846
+K+ +T E VEL S S R RKRGM+LPF P SITFD+IRY
Sbjct: 794 EKHVNRTGENVELLTLGTDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIRY 853
Query: 847 ALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV 906
++DMPQEMK +G+ +DRL LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY+
Sbjct: 854 SVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 913
Query: 907 SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFV 966
G I+ISGYPK QETFARI+GYCEQ DIHSPHVTVYESL+YSAWLRLP EVDS+ RKMFV
Sbjct: 914 EGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFV 973
Query: 967 EEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
EEVMELVEL +R ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 974 EEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1033
Query: 1027 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKY 1086
AIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDEL LMKRGGEEIYVGPLG + LI Y
Sbjct: 1034 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINY 1093
Query: 1087 FEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELSIPP 1146
FEGI GV KIK+GYNPATWMLEVTT AQE LGINFA+VY+NS+LY+ NK +I ELS PP
Sbjct: 1094 FEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISELSTPP 1153
Query: 1147 PGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIG 1206
PGS +L+F T++SQ FFTQCMACLWKQH SYWRNP YTA R+FFTT IAL+FGTIF ++G
Sbjct: 1154 PGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTIFLNLG 1213
Query: 1207 SKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQ 1266
K R DLFN++GSMYAA+LF+G+QN +VQP+V VERTVFYRE+AAGMYSALPYAF Q
Sbjct: 1214 KKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSALPYAFAQ 1273
Query: 1267 VVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVTPNH 1326
V+IE+PHIF+Q V+YG+IVY++IGFDWTV KF WY+ FM+ TF+YFT YGMM VA+TPN
Sbjct: 1274 VLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPNS 1333
Query: 1327 NIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDV-NDTF 1385
+IAAI+++AFY +WN+F+GF+IPRPR+PIWWRWY W CPV+WTLYGLVASQ+GD+ N T
Sbjct: 1334 DIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNSTL 1393
Query: 1386 DSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436
+ G+ V D+++ YFG+ HD LG VA VG LF F FA+SIK FNFQ R
Sbjct: 1394 EDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2102 bits (5447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1001/1447 (69%), Positives = 1205/1447 (83%), Gaps = 22/1447 (1%)
Query: 9 RISSARLGSSSIWRNNTLDVFARSSR--EDTYDDDEALTWAAIEKLPTYLRVQRGML--- 63
R++S R S+WR+ DVF+RSS +D DD+EAL WAA+E+LPTY RV+RG+L
Sbjct: 7 RMASLRR-EGSMWRSGG-DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVS 64
Query: 64 TEDEG---QAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIE 120
+ED G + EVD+ LG E R LIERL++ A++D+E+FLLKL++R++RVG+D PTIE
Sbjct: 65 SEDGGAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIE 124
Query: 121 VRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQ 180
VRFE+L VEA+ ++G+R LPT+ NS N +E N LH+LP++K+P+T+LHDVSGIIKP+
Sbjct: 125 VRFENLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPR 184
Query: 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI 240
R+TLLLGPP SGKTTLLLALAGKL KDLK SG+VTYNGHGM EFVP+RT+AYISQ+DLHI
Sbjct: 185 RMTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHI 244
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
GEMTVRETLAFSARCQGVG RYE+L EL+RREKAANIKPD DID+ MKA+++ GQE +VV
Sbjct: 245 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVV 304
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
TDY+LKILGL++CADT+VG+EMLRGISGGQRKR+TTGEMLVGPARALFMDEISTGLDSST
Sbjct: 305 TDYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSST 364
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
TYQIVNSLRQ+IHIL GTAVISLLQPAPETY LFDD+ILLSDGQ+VYQGPRE+VLEFFE
Sbjct: 365 TYQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEF 424
Query: 421 MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDEL 480
MGF+CP RKGVADFLQEVTSRKDQ QYW +D PY FV K+F++ F+SFH+G+ + +EL
Sbjct: 425 MGFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNEL 484
Query: 481 ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAM 540
+ PFD+++SHPAAL T KYG S+KELLKA RE LLMKRN+F+Y FK + A + M
Sbjct: 485 SEPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVM 544
Query: 541 TLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAW 600
T F RT M R + G IY+GAL+FA+ T+MFNGF+EL+MT+MKLPVF+KQRD LFFPAW
Sbjct: 545 TTFFRTSM-RHDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAW 603
Query: 601 AYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMG 660
AY++P+WIL+IPITF+EVG++VF+TYYV+GF+ ++ RF KQY LLL +NQ +S LFR +
Sbjct: 604 AYTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIA 663
Query: 661 ALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLG 720
+GR+++V++TFG + L LGGFIL+R DVKKWW+WGYW SP+ Y QNA++ NEFLG
Sbjct: 664 GIGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLG 723
Query: 721 KSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFG 780
SW + P LGV +LKSRG+F A WYWIG+GALLGY LLFN L+TVAL L PF
Sbjct: 724 HSWSQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFT 783
Query: 781 KPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNR----------KRGM 830
A +SE+AL +K+A T E VE +S E+ + ADQN ++GM
Sbjct: 784 DSHASMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGM 843
Query: 831 ILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGK 890
+LPF P SI+F+D+RY++DMP+ MKAQGI +DRL LKGVSG+FRPGVLTALMGVSGAGK
Sbjct: 844 VLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGK 903
Query: 891 TTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAW 950
TTLMDVLAGRKTGGY+ G I ISGYPK QETFARISGYCEQ DIHSPHVTVYESLV+SAW
Sbjct: 904 TTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAW 963
Query: 951 LRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS 1010
LRLP EVDS+ RKMF+EEVM+LVEL +R ALVGLPGVSGLSTEQRKRLTIAVELVANPS
Sbjct: 964 LRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPS 1023
Query: 1011 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070
IIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIF+AFDEL LMKRGGEE
Sbjct: 1024 IIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEE 1083
Query: 1071 IYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSE 1130
IYVGP+G++ S+LI+YFEGIDGV +IK+GYNPATWMLEVT+ AQE LG++F+++Y+ SE
Sbjct: 1084 IYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSE 1143
Query: 1131 LYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFF 1190
LY+ NKE+I+ELS PPPGS +L F T+YS+SF TQC+ACLWKQ+ SYWRNP YTAVRL F
Sbjct: 1144 LYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLF 1203
Query: 1191 TTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYR 1250
T IALMFGT+FW++G++ +QDLFNAMGSMYAA+L++GVQN+ SVQPVV VERTVFYR
Sbjct: 1204 TIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYR 1263
Query: 1251 ERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFL 1310
ERAAGMYSA PYAFGQV IELP+I +Q +IYGV+VY+MIGF+WTV+KFLWYL FMY T L
Sbjct: 1264 ERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLL 1323
Query: 1311 YFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTL 1370
YFT YGMM V +TPN +IAAII+SAFY +WNLFSG++IPRP++P+WWRWYCWICPV+WTL
Sbjct: 1324 YFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTL 1383
Query: 1371 YGLVASQFGDVNDTFDSGQK-VGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIK 1429
YGLVASQFGD+ + + V FV DYFG+ H+ L VVAVVHV V F F F+++I
Sbjct: 1384 YGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIM 1443
Query: 1430 AFNFQHR 1436
FNFQ R
Sbjct: 1444 KFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2070 bits (5363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1005/1440 (69%), Positives = 1191/1440 (82%), Gaps = 20/1440 (1%)
Query: 17 SSSIWRNNTLDVFARS----SREDTYDDDEALTWAAIEKLPTYLRVQRGML-------TE 65
++S+W + VF+RS S ED DD+EAL WAA+EKLPTY RV+R +L
Sbjct: 25 AASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGG 84
Query: 66 DEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEH 125
E + VD+ +LG ERR L+ERL+++AE+DNE+FLLKLK+RI+RVG+DIPTIEVRFEH
Sbjct: 85 GEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEH 144
Query: 126 LNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLL 185
L EAE +G+ LPTV NS N LEG N L +LP++K+ + ILHDVSGI+KP+R+TLL
Sbjct: 145 LEAEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLL 204
Query: 186 LGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245
LGPP SGKTTLLLALAG+LGKD+KFSG+VTYNGH ME+FVPQRT+AYISQ+DLHIGEMTV
Sbjct: 205 LGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTV 264
Query: 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVL 305
RETL+FSARCQGVG R+++L ELSRREKAANIKPD DID MKA+++EGQE N++TDY+L
Sbjct: 265 RETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYIL 324
Query: 306 KILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIV 365
KILGL++CADTMVGD+M+RGISGGQRKR+TTGEMLVGPA ALFMDEISTGLDSSTT+QIV
Sbjct: 325 KILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIV 384
Query: 366 NSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKC 425
SLRQ+IHIL GTAVISLLQPAPETY+LFDD+ILLSDGQIVYQGPRE VLEFFE MGFKC
Sbjct: 385 KSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKC 444
Query: 426 PERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFD 485
PERKGVADFLQEVTSRKDQ+QYW D+PY +V K+F+ FQSFH G+ + +ELATPFD
Sbjct: 445 PERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFD 504
Query: 486 KSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLR 545
KSK+HPAALTT +YG S ELLKA RE+LLMKRNSFVY F+ Q+ +++AMT+F R
Sbjct: 505 KSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFR 564
Query: 546 TEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLP 605
T+MHR +V DG I+MGALFF+V+ IMFNG SEL +TI KLPVF+KQRD LFFPAW Y++P
Sbjct: 565 TKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIP 624
Query: 606 TWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRN 665
+WILKIP++FIEVG +VFM+YYV+GF+ + RF KQY L+L +NQ A+ LFR +G RN
Sbjct: 625 SWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARN 684
Query: 666 IIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGH 725
+IVAN FGSF L +VLGGFIL R+ VKKWW+WGYW SPMMY QNA++VNEFLG SW
Sbjct: 685 MIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDK 744
Query: 726 VPPN--STEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQ 783
V N S E LGV L+SRG+FP A WYWIG GALLG+++LFN LFT+AL YL P+GK Q
Sbjct: 745 VLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQ 804
Query: 784 AILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEA-------DQNRKRGMILPFEP 836
+SEE L +K A +++ + S+ + E Q +RGM+LPF P
Sbjct: 805 PSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAP 864
Query: 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896
S+TFD+I+Y++DMPQEMKA GI +DRLE LKGVSG+FRPGVLTALMGVSGAGKTTLMDV
Sbjct: 865 LSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDV 924
Query: 897 LAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPE 956
LAGRKTGGY+ G+ITISGYPK QETFAR+SGYCEQ DIHSP VTV ESL++SAWLRLP +
Sbjct: 925 LAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKD 984
Query: 957 VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016
VDS+TRKMF+EEVMELVEL P+R+ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 985 VDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1044
Query: 1017 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076
PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDEL LMKRGGEEIYVGPL
Sbjct: 1045 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPL 1104
Query: 1077 GRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNK 1136
G S+LIKYFEGI GV +IK+GYNPATWMLEV+T +QE ALG++F +Y+ SEL++ NK
Sbjct: 1105 GHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNK 1164
Query: 1137 EMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIAL 1196
+I+ELS PPPGS LYF T+YS SF QC+ACLWK HLSYWRNPPY A+RLFFTT IAL
Sbjct: 1165 ALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIAL 1224
Query: 1197 MFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGM 1256
+FGTIFWD+G K QDLFNAMGSMY+A+LF+GV N+ SVQPVV+VERTVFYRERAAGM
Sbjct: 1225 LFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGM 1284
Query: 1257 YSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYG 1316
YSA PYAFGQV IE P+ +Q++IYG+IVY+MIGF WT +KF WYL FM+ TFLYFT YG
Sbjct: 1285 YSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYG 1344
Query: 1317 MMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVAS 1376
MM V +TP++++A+I++SAFY +WNLFSGFIIPRP++PIWWRWYCWICPV+WTLYGLVAS
Sbjct: 1345 MMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVAS 1404
Query: 1377 QFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436
QFGD+ D G V FV++YF + H LGVVAVV V +LF F F ++I NFQ R
Sbjct: 1405 QFGDIMTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2067 bits (5355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1418 (69%), Positives = 1161/1418 (81%), Gaps = 21/1418 (1%)
Query: 39 DDDEALTWAAIEKLPTYLRVQRGML-----------TEDEGQAREVDIKNLGFIERRNLI 87
DD+EAL WAA++KLPTY RV+ +L G+ VD+ +LG ERR L+
Sbjct: 52 DDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRALL 111
Query: 88 ERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCA 147
ERL+++A++DNE+FLLKLK+RI RVG+D+PTIEVRFEHL VEAE +G+ +PTV NS
Sbjct: 112 ERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNSIT 171
Query: 148 NMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD 207
N +E N L +LP+RK+ L ILHD+SGIIKP+R+TLLLGPP SGKTT LLALAG+L KD
Sbjct: 172 NKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRL-KD 230
Query: 208 LKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQE 267
LKFSG+VTYNGH ME+FVPQRT+AYISQ+DLHIGEMTVRETL+FSARCQGVG R+++L E
Sbjct: 231 LKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDMLTE 290
Query: 268 LSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327
L+RREKAANIKPD D+D MKA+++EGQE N++TDY+LKILGLE+CADTMVGD+M+RGIS
Sbjct: 291 LTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRGIS 350
Query: 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPA 387
GGQRKR+TTGEMLVGPA A FMDEISTGLDSSTT+QIV SLRQ+IHIL GTAVISLLQPA
Sbjct: 351 GGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQPA 410
Query: 388 PETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQY 447
PETY+LFDD+ILLSDG IVYQGPRENVLEFFE MGFKCPERKGVADFLQEVTSRKDQ+QY
Sbjct: 411 PETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQKQY 470
Query: 448 WANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELL 507
WA D+PY +V KEF+ FQSFH G+ + +ELATPFDKSKSHPAALTT +YG S ELL
Sbjct: 471 WAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAMELL 530
Query: 508 KACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAV 567
KA RE LL+KRNSFVY F+ Q+ +++AMT+F RT+MHR +V DG I+MGALFFAV
Sbjct: 531 KANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFFAV 590
Query: 568 ITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYY 627
+ IM NG SEL +TI KLPVF+KQRD LFFPAW Y++P+WILK P++FIEVG + FM+YY
Sbjct: 591 MMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMSYY 650
Query: 628 VVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFI 687
V+GF+ N+ RF KQY L+L V+Q A+ LFR +G RN+IVAN FGSF L +VLGGFI
Sbjct: 651 VIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGGFI 710
Query: 688 LSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPPNS--TEPLGVVILKSRGLF 745
L+RD V KWW+WGYW SPMMY QNA++VNEFLG SW V NS E LGV L SRG+F
Sbjct: 711 LARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRGIF 770
Query: 746 PNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEEPVEL 805
P A WYWIG GALLG+++LFN LFT+AL YL P GK Q +SEE L +K A +++
Sbjct: 771 PEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGNVLDV 830
Query: 806 SSGVQS-------SYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQG 858
+ S S G + Q +RGM+LPF P S+TF+DI+Y++DMPQEMKA G
Sbjct: 831 DTMASSNNLAIVGSTGTGSEIADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKAHG 890
Query: 859 IPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918
I +DRLE LKGVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY+ G+I+ISGYPK
Sbjct: 891 IVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKK 950
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
QETFAR+SGYCEQ DIHSP VTV ESL++SAWLRLP +VDS+TRKMF+EEVMELVEL P+
Sbjct: 951 QETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPL 1010
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038
R+ALVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+
Sbjct: 1011 RDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVN 1070
Query: 1039 TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKE 1098
TGRTVVCTIHQPSIDIF+AFDEL LMKRGGEEIYVGPLG H S+LIKYFEGI GV KI +
Sbjct: 1071 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVSKITD 1130
Query: 1099 GYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRY 1158
GYNPATWMLEVTT +QE AL ++F +Y+ SEL++ NK +I+ELS PPPGS LYF T+Y
Sbjct: 1131 GYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQY 1190
Query: 1159 SQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNA 1218
SQSF QC+ACLWKQHLSYWRNPPY A+RLFFTT IAL+FGTIFWD+G K QDLFNA
Sbjct: 1191 SQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLFNA 1250
Query: 1219 MGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQA 1278
MGSMYAA+LF+GV N SVQPVV+VERTVFYRERAAGMYSALPYAFGQV IE P+ +Q+
Sbjct: 1251 MGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQS 1310
Query: 1279 VIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYV 1338
VIY +IVY+MIGF WTV+KF WYL FM+ T LYFT YGMM V +TP++++A+I++SAFY
Sbjct: 1311 VIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYA 1370
Query: 1339 LWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDTFDSGQKVGDFVKDY 1398
+WNLF+GF+I RP P+WWRWYCWICPV+WTLYGL+ SQ+GD+ D G V FV++Y
Sbjct: 1371 IWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNVFVENY 1430
Query: 1399 FGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436
F + H LG VAVV V +LF F F ++I NFQ R
Sbjct: 1431 FDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2065 bits (5351), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1003/1425 (70%), Positives = 1207/1425 (84%), Gaps = 10/1425 (0%)
Query: 17 SSSIWRN-NTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQRGMLTEDEGQAREVDI 75
S S WR+ +T DVF RSSRE+ DD+EAL WAA+EKLPTY R+++G++T D G+ +EVDI
Sbjct: 22 SVSAWRSPSTSDVFGRSSREE--DDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEVDI 79
Query: 76 KNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYIG 135
+ LGF ER+NL+E+L++ AEEDNE+FLLKL++R+ERVG+D PTIEVRFEHLN+ AEA++G
Sbjct: 80 QGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAFVG 139
Query: 136 SRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTT 195
+R +PT+ N N L+ LH++PS K+P++ILHDVSGIIKP R+TLLLGPP +GKTT
Sbjct: 140 NRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGKTT 199
Query: 196 LLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARC 255
LLLALAGKL LK +G VTYNGHGM EFVPQRTSAYISQ+D+HIGEMTVRETLAFS+RC
Sbjct: 200 LLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSSRC 259
Query: 256 QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD 315
QGVG RYE+L ELSRREK ANIKPDPD+D+ MKA ++EGQE +VVTDY+LKILGL++CAD
Sbjct: 260 QGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQE-SVVTDYILKILGLDICAD 318
Query: 316 TMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHIL 375
TMVGD M+RGISGGQ+KR+TTGEMLVGP++ALFMDEISTGLDSSTT+QIVNSLRQS+HIL
Sbjct: 319 TMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHIL 378
Query: 376 NGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFL 435
GTA+I+LLQPAPETY+LFDD++LLSDGQIVYQGPRENVLEFFE MGFKCPERKGVADFL
Sbjct: 379 GGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFL 438
Query: 436 QEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAALT 495
QEVTSRKDQ+QYW ++EPY FV EFSE F+SFH+G KL +EL+TPFD+S++HPAALT
Sbjct: 439 QEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALT 498
Query: 496 TKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVED 555
T KYG SK ELLKAC RE+LLMKRNSFVY FK+ Q+ A +AMT+F RT++ R+ +ED
Sbjct: 499 TSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLED 558
Query: 556 GGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITF 615
I+ GA+F ++T +FNGF+EL+M+I KLPVFYKQRD LF+P WAY+LPTWILKIPI+F
Sbjct: 559 ATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISF 618
Query: 616 IEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSF 675
+E G+W+ MTYYV+GF+ N+ R + Y LL+ ++Q ASGLFRL+ A+GR+++VA+TFG+F
Sbjct: 619 VECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAF 678
Query: 676 ANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPPNSTEPLG 735
A L +LVLGGFI++R+ +KK+W+WGYW SP+MY QNA+AVNEFLG SW + + + LG
Sbjct: 679 AQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLG 738
Query: 736 VVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKN 795
L++RG+F + WYWIGVGAL+GY++LFNFLF + L++LDP GK Q +SEEAL +K
Sbjct: 739 ERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKE 798
Query: 796 ACKTEEPVELS---SGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQ 852
A +T VEL+ S S G V D NRK+GM+LPF P SITFD+++Y++DMPQ
Sbjct: 799 ANRTGANVELATRGSAATSDGGSVEI--RKDGNRKKGMVLPFTPLSITFDNVKYSVDMPQ 856
Query: 853 EMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI 912
EMK +G+ +D+L LKGVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTGGY+ G I I
Sbjct: 857 EMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEGDIRI 916
Query: 913 SGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMEL 972
SGYPKNQETFARISGYCEQ DIHSPHVTVYESL+YSAWLRLP EVD RKMFV+EVM+L
Sbjct: 917 SGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDEVMDL 976
Query: 973 VELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1032
VELN +R +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 977 VELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 1036
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDG 1092
VRNTVDTGRTVVCTIHQPSIDIF+AFDEL LMKRGGEEIYVGPLGR S LIKYFE IDG
Sbjct: 1037 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFESIDG 1096
Query: 1093 VPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNL 1152
V KIKE YNPATWMLEVTT +QE LG+NFA+VY+NS+LYK NK++IKELS PPPGSK+L
Sbjct: 1097 VKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELSTPPPGSKDL 1156
Query: 1153 YFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANR 1212
+F T++SQSF QC+ACLWKQH SYWRNP YTA RLFFT IAL+FGTIFWD+G KR+
Sbjct: 1157 FFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFWDLGKKRSTS 1216
Query: 1213 QDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELP 1272
DL NAMGSMYAA+LF+G+QNA +VQP+V VERTVFYRE+AAGMYSALPYA+ QV+IE+P
Sbjct: 1217 LDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYAYAQVLIEVP 1276
Query: 1273 HIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAII 1332
HI +Q ++YG++VY+MIGFDWT +KFLWY+ FM+ TFLYFT YGMM VA+TPN +IAAI+
Sbjct: 1277 HILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAIV 1336
Query: 1333 ASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDTF-DSGQKV 1391
A+AFY +WN+F+GFIIPRPR+PIWWRWY W CPV+WTLYGLV SQFG+ DT D + V
Sbjct: 1337 AAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTMSDVDETV 1396
Query: 1392 GDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436
DF++ + G+ HD L VV V+ V VLF FA+SIK NFQ R
Sbjct: 1397 KDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2061 bits (5341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1001/1436 (69%), Positives = 1199/1436 (83%), Gaps = 18/1436 (1%)
Query: 5 QASFRIS---SARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQRG 61
+AS R S S R S+SIWRNN +VF+RS+R++ DD+EAL WAA+EKLPTY R+++G
Sbjct: 15 RASIRGSMRGSIRENSNSIWRNNGAEVFSRSARDE--DDEEALKWAALEKLPTYDRLRKG 72
Query: 62 MLTEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEV 121
+L +G A EVD+ + G +ER+NL+ERL+K+A+EDNEKFLLKLK+RI+RVG+D P+IEV
Sbjct: 73 ILFGSQGAAAEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEV 132
Query: 122 RFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQR 181
RFEHLN++A+AY+GSRALPT N +N +EG L+ +H+LPS+K+ +TIL DVSGI+KP R
Sbjct: 133 RFEHLNIDADAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCR 192
Query: 182 LTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIG 241
+TLLLGPP SGKTTLLLALAGKL LK +G+VTYNGH + EFVPQRT+AYISQ+DLHIG
Sbjct: 193 MTLLLGPPGSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIG 252
Query: 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVT 301
EMTVRETL FSARCQGVG RYE+L ELSRREKAANIKPD DID+ MKAAS EGQE VVT
Sbjct: 253 EMTVRETLEFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVT 312
Query: 302 DYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTT 361
DY+LKILGL++CADTMVGD+M+RGISGGQ+KR+TTGEM+VGP++ALFMDEISTGLDSSTT
Sbjct: 313 DYILKILGLDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTT 372
Query: 362 YQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERM 421
Y IVNSL+QS+ I+ GTA+ISLLQPAPETY LFDD+ILLSDG IVY+GPRE VLEFFE M
Sbjct: 373 YSIVNSLKQSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESM 432
Query: 422 GFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELA 481
GFKCPERKG ADFLQEVTS+KDQ+QYW +DEPY F+T+KEF+E +QSFH+G+K+ DEL
Sbjct: 433 GFKCPERKGAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELK 492
Query: 482 TPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMT 541
T FDKSKSHPAALTT+KYG K++LLK C RE LLM+RNSFVY FK FQ+ A + MT
Sbjct: 493 TTFDKSKSHPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMT 552
Query: 542 LFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWA 601
+F RT+M R + EDGGIY GALFF VI IMFNG SEL MT+ KLPVFYKQRDFLF+P+WA
Sbjct: 553 IFFRTKMPRDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWA 612
Query: 602 YSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGA 661
Y++P+WILKIP+TF EVG+WVF+TYYV+GF+ N+ RF KQ+ LLL VNQ AS LFR + A
Sbjct: 613 YAIPSWILKIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAA 672
Query: 662 LGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGK 721
+GR + VA+TFG+FA L LGGFIL+R+DVK WW+WGYW SP+MY NA+ VNEF G+
Sbjct: 673 VGRTMGVASTFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQ 732
Query: 722 SWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGK 781
W H+ TEPLG ++++RG FP+AYWYWIGVGAL G++++FN ++VAL YL+PF K
Sbjct: 733 KWKHIVAGGTEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDK 792
Query: 782 PQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITF 841
PQA +S+E+ ++ + + + A +N+K+GM+LPF+PHSITF
Sbjct: 793 PQATISDESENNESESSPQ------------ITSTQEGDSASENKKKGMVLPFDPHSITF 840
Query: 842 DDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901
D++ Y++DMP EM+ G D+RL LK VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 841 DEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 900
Query: 902 TGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDT 961
TGGY+ GSI ISGYPK Q+TFARISGYCEQ DIHSP+VTV+ESLVYSAWLRLP +V+ +
Sbjct: 901 TGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEK 960
Query: 962 RKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021
R MFVEEVM+LVEL P+R ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 961 RMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1020
Query: 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCS 1081
DARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIF+AFDEL LMKRGG+EIYVGPLGR
Sbjct: 1021 DARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSC 1080
Query: 1082 QLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKE 1141
LIKYFE I GV KI EGYNPATWMLEVT +QE ALG++F +YK S+LY+ NK +I E
Sbjct: 1081 HLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALIDE 1140
Query: 1142 LSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTI 1201
LS+P PG+ +L+F + +SQ F+TQCMACLWKQH SYWRNP YTAVRL FTTFIAL+FGT+
Sbjct: 1141 LSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTM 1200
Query: 1202 FWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALP 1261
FWDIG+K + QDL NAMGSMYAA+LFLGVQN++SVQPVV+VERTVFYRE+AAGMYSA+P
Sbjct: 1201 FWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIP 1260
Query: 1262 YAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVA 1321
YAF QV+IE+P+IF+QA +YG+IVY+MIGF+WTV+KF W FM+ TFLYFT +GMMTVA
Sbjct: 1261 YAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVA 1320
Query: 1322 VTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDV 1381
VTPN N+A+I+A FY +WNLFSGFI+PRPR+PIWWRWY W CP++WTLYGLVASQFGD+
Sbjct: 1321 VTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDL 1380
Query: 1382 NDTF-DSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436
D D Q V F++ FG+ HD LGVVA V V V+F FTFA IKAFNFQ R
Sbjct: 1381 QDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1436 | ||||||
| 296081973 | 1436 | unnamed protein product [Vitis vinifera] | 0.993 | 0.993 | 0.794 | 0.0 | |
| 449460732 | 1451 | PREDICTED: pleiotropic drug resistance p | 0.997 | 0.987 | 0.786 | 0.0 | |
| 256538311 | 1451 | pleiotropic drug resistance protein [Cuc | 0.997 | 0.987 | 0.785 | 0.0 | |
| 449483991 | 1451 | PREDICTED: LOW QUALITY PROTEIN: pleiotro | 0.997 | 0.987 | 0.785 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.993 | 0.984 | 0.782 | 0.0 | |
| 356515478 | 1448 | PREDICTED: pleiotropic drug resistance p | 0.997 | 0.988 | 0.788 | 0.0 | |
| 147864006 | 1441 | hypothetical protein VITISV_032205 [Viti | 0.986 | 0.983 | 0.780 | 0.0 | |
| 375273923 | 1452 | ABCG/PDR subfamily ABC transporter [Petu | 0.998 | 0.987 | 0.778 | 0.0 | |
| 375273925 | 1452 | ABCG/PDR subfamily ABC protein [Petunia | 0.998 | 0.987 | 0.777 | 0.0 | |
| 224143069 | 1429 | predicted protein [Populus trichocarpa] | 0.994 | 0.999 | 0.789 | 0.0 |
| >gi|296081973|emb|CBI20978.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2437 bits (6316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1139/1433 (79%), Positives = 1289/1433 (89%), Gaps = 7/1433 (0%)
Query: 8 FRISSARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQRGMLTEDE 67
+R++SARL SS+IWRN+ ++VF+RSSR++ DD+EAL WAAIEKLPTYLR++RG+L E+E
Sbjct: 7 YRVNSARLSSSNIWRNSGMEVFSRSSRDE--DDEEALKWAAIEKLPTYLRIRRGILAEEE 64
Query: 68 GQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLN 127
G+ARE+DI +LG IE++NL+ERL+KIAEEDNEKFLLKLK+RI+RVGLDIPTIEVRFEH+
Sbjct: 65 GKAREIDITSLGLIEKKNLLERLVKIAEEDNEKFLLKLKERIDRVGLDIPTIEVRFEHIT 124
Query: 128 VEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLG 187
V+AEAYIG RALPT+ N ANMLEGFLNYLH+LPSRKKPL ILHDVSGIIKP R+TLLLG
Sbjct: 125 VDAEAYIGGRALPTIINFSANMLEGFLNYLHILPSRKKPLPILHDVSGIIKPGRMTLLLG 184
Query: 188 PPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247
PPSSGKTTLLL LAGKLG DLK SGRV+YNGHGM+EFVPQR+SAYISQ DLHIGEMTVRE
Sbjct: 185 PPSSGKTTLLLTLAGKLGSDLKLSGRVSYNGHGMDEFVPQRSSAYISQYDLHIGEMTVRE 244
Query: 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKI 307
TLAFSARCQGVG Y++L ELSRREK ANIKPDPDID+ MKAA+L+GQ +++TDY+LKI
Sbjct: 245 TLAFSARCQGVGTGYDMLAELSRREKVANIKPDPDIDIYMKAAALKGQGGSLITDYILKI 304
Query: 308 LGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNS 367
LGLEVCADT+VGDEM+RGISGGQ++RLTTGEMLVGPA+ALFMDEISTGLDSSTT+QIVNS
Sbjct: 305 LGLEVCADTIVGDEMVRGISGGQKRRLTTGEMLVGPAKALFMDEISTGLDSSTTFQIVNS 364
Query: 368 LRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPE 427
+RQSIHIL GTA+ISLLQPAPETY+LFDD+ILLSDGQIVYQGPRENVLEFFE MGFKCPE
Sbjct: 365 IRQSIHILKGTAIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEHMGFKCPE 424
Query: 428 RKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKS 487
RKGVADFLQEVTS+KDQEQYWA++ EPYSFVT EFSE FQSFH+G++LGDELA PFDK+
Sbjct: 425 RKGVADFLQEVTSKKDQEQYWAHRGEPYSFVTVTEFSEAFQSFHVGRRLGDELAIPFDKA 484
Query: 488 KSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTE 547
K+H AALTTKKYG SKKELLKAC +RE LLMKRNSFVY FKM Q+ A + MTLFLRT+
Sbjct: 485 KAHTAALTTKKYGVSKKELLKACISRELLLMKRNSFVYIFKMSQLILLAFIMMTLFLRTD 544
Query: 548 MHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTW 607
M R T+ DG I++G++FF ++ IMFNGFSEL++TIMKLPVFYKQRD LF+P+WAYSLPTW
Sbjct: 545 MPRKTIADGWIFLGSMFFTLMMIMFNGFSELALTIMKLPVFYKQRDLLFYPSWAYSLPTW 604
Query: 608 ILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNII 667
ILKIPIT +EV IWVFMTYYVVGF+ NIERF +QY LLLCVNQ ASGL RLM ALGRNII
Sbjct: 605 ILKIPITLVEVAIWVFMTYYVVGFDPNIERFFRQYLLLLCVNQMASGLLRLMAALGRNII 664
Query: 668 VANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVP 727
VANTFGSFA L VLV+GGF+LS+DDVK WW+WGYW SPMMYGQNA+AVNEFLGKSW HVP
Sbjct: 665 VANTFGSFALLAVLVMGGFVLSKDDVKPWWMWGYWISPMMYGQNAIAVNEFLGKSWRHVP 724
Query: 728 PNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILS 787
N+TEPLGV++LKSRG+FP AYWYW+GVGAL+GYV LFNFLFTVAL YL+P+GK Q +LS
Sbjct: 725 ENATEPLGVLVLKSRGIFPEAYWYWLGVGALIGYVFLFNFLFTVALAYLNPYGKHQTVLS 784
Query: 788 EEALAKKN----ACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDD 843
EE L +++ +C + + S +S V SFN ADQNRKRGMILPFEP SITFD+
Sbjct: 785 EETLTEQSSRGTSCTGGDKIR-SGSSRSLSARVGSFNNADQNRKRGMILPFEPLSITFDE 843
Query: 844 IRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 903
IRYA+DMPQEMK+QGIP++RLE LKGVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 844 IRYAVDMPQEMKSQGIPENRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 903
Query: 904 GYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRK 963
GY+ GSI ISGYPKNQ+TFARISGYCEQTDIHSPHVTVYESL+YSAWLRLPPEVDS TRK
Sbjct: 904 GYIDGSIKISGYPKNQKTFARISGYCEQTDIHSPHVTVYESLLYSAWLRLPPEVDSATRK 963
Query: 964 MFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
MF+EEVMELVELN +R+ALVGLPGV GLSTEQRKRLT+AVELVANPSIIFMDEPTSGLDA
Sbjct: 964 MFIEEVMELVELNSLRQALVGLPGVDGLSTEQRKRLTVAVELVANPSIIFMDEPTSGLDA 1023
Query: 1024 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQL 1083
RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL L+KRGGEEIY GPLG H + L
Sbjct: 1024 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLKRGGEEIYAGPLGHHSAHL 1083
Query: 1084 IKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELS 1143
IKYFEGIDGV KIK+GYNPATWMLEVT+ AQEAALGINF VYKNSELY+ NK +IKELS
Sbjct: 1084 IKYFEGIDGVSKIKDGYNPATWMLEVTSAAQEAALGINFTDVYKNSELYRRNKALIKELS 1143
Query: 1144 IPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFW 1203
PPPGSK+LYF T+YSQSFF QC CLWKQH SYWRNP YTAVRL FTTFIALMFGTIFW
Sbjct: 1144 TPPPGSKDLYFPTQYSQSFFAQCKTCLWKQHWSYWRNPSYTAVRLLFTTFIALMFGTIFW 1203
Query: 1204 DIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYA 1263
D+GS+R +QDLFNAMGSMY A+LF+G QNATSVQPVVA+ERTVFYRE+AAGMYSALPYA
Sbjct: 1204 DLGSRRQRKQDLFNAMGSMYCAVLFIGAQNATSVQPVVAIERTVFYREKAAGMYSALPYA 1263
Query: 1264 FGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVT 1323
FGQV+IELP+I IQ +IYGVIVYAMIGFDWT++KF WY+ FMY TFLYFT YGMM VAV+
Sbjct: 1264 FGQVMIELPYILIQTIIYGVIVYAMIGFDWTMTKFFWYIFFMYFTFLYFTFYGMMAVAVS 1323
Query: 1324 PNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVND 1383
PNHNIAAII+SAFY +WNLFSGFI+PR R+P+WWRWY W CP+SWTLYGL+ SQFGD+ D
Sbjct: 1324 PNHNIAAIISSAFYAIWNLFSGFIVPRTRIPVWWRWYYWCCPISWTLYGLIGSQFGDMKD 1383
Query: 1384 TFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436
D+G+ + DFV+ YFG+ +D LG+VAVV VG+ VLFGFTFAYSI+AFNFQ R
Sbjct: 1384 KLDTGETIEDFVRSYFGFRNDFLGIVAVVIVGITVLFGFTFAYSIRAFNFQKR 1436
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460732|ref|XP_004148099.1| PREDICTED: pleiotropic drug resistance protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2433 bits (6305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1143/1454 (78%), Positives = 1289/1454 (88%), Gaps = 21/1454 (1%)
Query: 1 MDAGQASFRISSARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQR 60
MD+G+ +R+SSAR+ SSSIWRN+ ++VF+RSSR+D DD+EAL WA+IE+LPTYLRV+R
Sbjct: 1 MDSGEI-YRVSSARINSSSIWRNSAMEVFSRSSRDD--DDEEALKWASIERLPTYLRVRR 57
Query: 61 GMLTEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIE 120
G+L D ARE+D++NLG +ERRN++ERL+KIAE+DNE+FLLKLK+R+ERVGLD+P IE
Sbjct: 58 GILNLDGESAREIDVQNLGLLERRNILERLVKIAEDDNERFLLKLKNRMERVGLDLPAIE 117
Query: 121 VRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQ 180
VRFEHL VEAEA+ RALPT+FN NMLEGFL+Y H++P+RKK L+ILHDVSGIIKP
Sbjct: 118 VRFEHLEVEAEAHTAGRALPTMFNFSLNMLEGFLSYFHIIPNRKKQLSILHDVSGIIKPG 177
Query: 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI 240
R+TLLLGPPSSGKTTLL LAGKLGKDLKFSGRVTYNGHGM EFVPQRTSAYISQ DLHI
Sbjct: 178 RMTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRTSAYISQQDLHI 237
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
GEMTVRETL+FSARCQGVGPRY++L ELSRREKAANIKPDPD+D+IMKAA+L GQE NVV
Sbjct: 238 GEMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVV 297
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
TDYVLKILGLE+CADTMVGDEM RGISGGQ+KR+TTGEMLVGP+RALFMDEISTGLDSST
Sbjct: 298 TDYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSST 357
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
TYQIVNS+RQ IHILNGTA+ISLLQPAPETYELFDD+IL+SDGQ+VYQGPRENVLEFF+
Sbjct: 358 TYQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQH 417
Query: 421 MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDEL 480
MGF CP+RKGVADFLQEVTSRKDQEQYW +DE Y FV+ +EFSE FQSFH+G+KLGDEL
Sbjct: 418 MGFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDEL 477
Query: 481 ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAM 540
ATPFDKSKSHPAALTT+KYGASKKELLKAC +RE LLMKRNSFVY FK+ Q+ A V M
Sbjct: 478 ATPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTM 537
Query: 541 TLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAW 600
TLF RTEMHR TV+DG +YMGALFFA+I IMFNGFSEL++TI+KLPVFYKQRDFLFFP W
Sbjct: 538 TLFFRTEMHRRTVDDGSVYMGALFFAIIIIMFNGFSELALTILKLPVFYKQRDFLFFPPW 597
Query: 601 AYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMG 660
AYS+PTWILKIPITF+EVGIWV MTYYVVGF+ N RF K + +LL VNQ AS LFRL+G
Sbjct: 598 AYSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIG 657
Query: 661 ALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLG 720
ALGRNIIVANTFGSFA LTVLVLGGF+L+RDDV WW+WGYW SPMMY QN +AVNEFLG
Sbjct: 658 ALGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLG 717
Query: 721 KSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFG 780
W H PNS E LGV+ILKSRG+FP A WYWIGVGA +GY+LLFNFLFT+AL+YLDPF
Sbjct: 718 HKWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFE 777
Query: 781 KPQAILSEEALAKKNACKTE--EPVELSSGVQS---------------SYGEVRSFN-EA 822
KPQAI+S+E K+ K++ + +ELSS +S S V SF+ EA
Sbjct: 778 KPQAIVSKETSTDKSVKKSQDVQELELSSKGKSSSERTENQISLSSRTSSARVGSFSEEA 837
Query: 823 DQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTAL 882
+QN+KRGM+LPFEPHSITFD+IRYA+DMPQEMK+QG+ +DRLE LKGVSG+FRPGVLTAL
Sbjct: 838 NQNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVLTAL 897
Query: 883 MGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942
MGVSGAGKTTLMDVLAGRKTGGY+ G+ITISGYPK QETFARI+GYCEQTDIHSPHVTVY
Sbjct: 898 MGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHVTVY 957
Query: 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA 1002
ESLVYSAWLRLPP+VDS TRKMFVEEVMEL+ELNP+R+A+VGLPGVSGLSTEQRKRLTIA
Sbjct: 958 ESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRLTIA 1017
Query: 1003 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL 1062
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL
Sbjct: 1018 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELF 1077
Query: 1063 LMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINF 1122
L++RGGEEIYVGP+GRH SQLI+YFE I+GVPKIK+GYNPATWMLE+TT AQE LG+NF
Sbjct: 1078 LLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLGVNF 1137
Query: 1123 AKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPP 1182
+YK+SELY+ NK +IKELS+P S LYF T+YSQSFF QC+ACLWKQHLSYWRNPP
Sbjct: 1138 NTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWRNPP 1197
Query: 1183 YTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVA 1242
Y+AVR FTTFIALMFGTIFWD+GSKR +QDLFNAMGSMYAA+LF+GVQNATSVQPVVA
Sbjct: 1198 YSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQPVVA 1257
Query: 1243 VERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYL 1302
+ERTVFYRERAAGMYSALPYAFGQVVIELP+IFIQ V+YGVIVY MIGF+WT +KF WY+
Sbjct: 1258 IERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFFWYI 1317
Query: 1303 LFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCW 1362
FMY T LYFT YGMMTVAVTPNHNIAAI++SAFY WNLFSGFI+PR R+PIWWRWY W
Sbjct: 1318 FFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRWYYW 1377
Query: 1363 ICPVSWTLYGLVASQFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGF 1422
ICPV+WTLYGLV SQFGD+ND DS Q V +FV +YFGY +D LGVVA VHVG+ VLFGF
Sbjct: 1378 ICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVLFGF 1437
Query: 1423 TFAYSIKAFNFQHR 1436
FA+SIK FNFQ R
Sbjct: 1438 IFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256538311|gb|ACU82515.1| pleiotropic drug resistance protein [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2432 bits (6302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1142/1454 (78%), Positives = 1288/1454 (88%), Gaps = 21/1454 (1%)
Query: 1 MDAGQASFRISSARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQR 60
MD+G+ +R+SSAR+ SSSIWRN+ ++VF+RSSR+D DD+EAL WA+IE+LPTYLRV+R
Sbjct: 1 MDSGEI-YRVSSARINSSSIWRNSAMEVFSRSSRDD--DDEEALKWASIERLPTYLRVRR 57
Query: 61 GMLTEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIE 120
G+L D ARE+D++NLG +ERRN++ERL+KIAE+DNE+FLLKLK+R+ERVGLD+P IE
Sbjct: 58 GILNLDGESAREIDVQNLGLLERRNILERLVKIAEDDNERFLLKLKNRMERVGLDLPAIE 117
Query: 121 VRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQ 180
VRFEHL VEAEA+ RALPT+FN NMLEGFL+Y H++P+RKK L+ILHDVSGIIKP
Sbjct: 118 VRFEHLEVEAEAHTAGRALPTMFNFSLNMLEGFLSYFHIIPNRKKQLSILHDVSGIIKPG 177
Query: 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI 240
R+TLLLGPPSSGKTTLL LAGKLGKDLKFSGRVTYNGHGM EFVPQRTSAYISQ DLHI
Sbjct: 178 RMTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRTSAYISQQDLHI 237
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
GEMTVRETL+FSARCQGVGPRY++L ELSRREKAANIKPDPD+D+IMKAA+L GQE NVV
Sbjct: 238 GEMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVV 297
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
TDYVLKILGLE+CADTMVGDEM RGISGGQ+KR+TTGEMLVGP+RALFMDEISTGLDSST
Sbjct: 298 TDYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSST 357
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
TYQIVNS+RQ IHILNGTA+ISLLQPAPETYELFDD+IL+SDGQ+VYQGPRENVLEFF+
Sbjct: 358 TYQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQH 417
Query: 421 MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDEL 480
MGF CP+RKGVADFLQEVTSRKDQEQYW +DE Y FV+ +EFSE FQSFH+G+KLGDEL
Sbjct: 418 MGFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFQSFHVGKKLGDEL 477
Query: 481 ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAM 540
ATPFDKSKSHPAALTT+KYGASKKELLKAC +RE LLMKRNSFVY FK+ Q+ A V M
Sbjct: 478 ATPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTM 537
Query: 541 TLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAW 600
TLF RTEMHR TV+DG +YMGALFFA+I MFNGFSEL++TI+KLPVFYKQRDFLFFP W
Sbjct: 538 TLFFRTEMHRRTVDDGSVYMGALFFAIIITMFNGFSELALTILKLPVFYKQRDFLFFPPW 597
Query: 601 AYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMG 660
AYS+PTWILKIPITF+EVGIWV MTYYVVGF+ N RF K + +LL VNQ AS LFRL+G
Sbjct: 598 AYSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIG 657
Query: 661 ALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLG 720
ALGRNIIVANTFGSFA LTVLVLGGF+L+RDDV WW+WGYW SPMMY QN +AVNEFLG
Sbjct: 658 ALGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLG 717
Query: 721 KSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFG 780
W H PNS E LGV+ILKSRG+FP A WYWIGVGA +GY+LLFNFLFT+AL+YLDPF
Sbjct: 718 HKWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFE 777
Query: 781 KPQAILSEEALAKKNACKTE--EPVELSSGVQS---------------SYGEVRSFN-EA 822
KPQAI+S+E K+ K++ + +ELSS +S S V SF+ EA
Sbjct: 778 KPQAIVSKETSTDKSVKKSQDVQELELSSKGKSSSERTENQISLSSRTSSARVGSFSEEA 837
Query: 823 DQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTAL 882
+QN+KRGM+LPFEPHSITFD+IRYA+DMPQEMK+QG+ +DRLE LKGVSG+FRPGVLTAL
Sbjct: 838 NQNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVLTAL 897
Query: 883 MGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942
MGVSGAGKTTLMDVLAGRKTGGY+ G+ITISGYPK QETFARI+GYCEQTDIHSPHVTVY
Sbjct: 898 MGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHVTVY 957
Query: 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA 1002
ESLVYSAWLRLPP+VDS TRKMFVEEVMEL+ELNP+R+A+VGLPGVSGLSTEQRKRLTIA
Sbjct: 958 ESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRLTIA 1017
Query: 1003 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL 1062
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL
Sbjct: 1018 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELF 1077
Query: 1063 LMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINF 1122
L++RGGEEIYVGP+GRH SQLI+YFE I+GVPKIK+GYNPATWMLE+TT AQE LG+NF
Sbjct: 1078 LLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLGVNF 1137
Query: 1123 AKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPP 1182
+YK+SELY+ NK +IKELS+P S LYF T+YSQSFF QC+ACLWKQHLSYWRNPP
Sbjct: 1138 NTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWRNPP 1197
Query: 1183 YTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVA 1242
Y+AVR FTTFIALMFGTIFWD+GSKR +QDLFNAMGSMYAA+LF+GVQNATSVQPVVA
Sbjct: 1198 YSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQPVVA 1257
Query: 1243 VERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYL 1302
+ERTVFYRERAAGMYSALPYAFGQVVIELP+IFIQ V+YGVIVY MIGF+WT +KF WY+
Sbjct: 1258 IERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFFWYI 1317
Query: 1303 LFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCW 1362
FMY T LYFT YGMMTVAVTPNHNIAAI++SAFY WNLFSGFI+PR R+PIWWRWY W
Sbjct: 1318 FFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRWYYW 1377
Query: 1363 ICPVSWTLYGLVASQFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGF 1422
ICPV+WTLYGLV SQFGD+ND DS Q V +FV +YFGY +D LGVVA VHVG+ VLFGF
Sbjct: 1378 ICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVLFGF 1437
Query: 1423 TFAYSIKAFNFQHR 1436
FA+SIK FNFQ R
Sbjct: 1438 IFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483991|ref|XP_004156752.1| PREDICTED: LOW QUALITY PROTEIN: pleiotropic drug resistance protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2430 bits (6299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1142/1454 (78%), Positives = 1288/1454 (88%), Gaps = 21/1454 (1%)
Query: 1 MDAGQASFRISSARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQR 60
MD+G+ +R+SSAR+ SSSIWRN+ ++VF+RSSR+D DD+EAL WA+IE+LPTYLRV+R
Sbjct: 1 MDSGEI-YRVSSARINSSSIWRNSAMEVFSRSSRDD--DDEEALKWASIERLPTYLRVRR 57
Query: 61 GMLTEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIE 120
G+L D ARE+D++NLG +ERRN++ERL+KIAE+DNE+FLLKLK+R+ERVGLD+P IE
Sbjct: 58 GILNLDGESAREIDVQNLGLLERRNILERLVKIAEDDNERFLLKLKNRMERVGLDLPAIE 117
Query: 121 VRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQ 180
VRFEHL VEAEA+ RALPT+FN NMLEGFL+Y H++P+RKK L+ILHDVSGIIKP
Sbjct: 118 VRFEHLEVEAEAHTAGRALPTMFNFSLNMLEGFLSYFHIIPNRKKQLSILHDVSGIIKPG 177
Query: 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI 240
R+TLLLGPPSSGKTTLL LAGKLGKDLKFSGRVTYNGHGM EFVPQRTSAYISQ DLHI
Sbjct: 178 RMTLLLGPPSSGKTTLLKTLAGKLGKDLKFSGRVTYNGHGMNEFVPQRTSAYISQQDLHI 237
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
GEMTVRETL+FSARCQGVGPRY++L ELSRREKAANIKPDPD+D+IMKAA+L GQE NVV
Sbjct: 238 GEMTVRETLSFSARCQGVGPRYDMLTELSRREKAANIKPDPDLDIIMKAAALGGQETNVV 297
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
TDYVLKILGLE+CADTMVGDEM RGISGGQ+KR+TTGEMLVGP+RALFMDEISTGLDSST
Sbjct: 298 TDYVLKILGLEICADTMVGDEMFRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSST 357
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
TYQIVNS+RQ IHILNGTA+ISLLQPAPETYELFDD+IL+SDGQ+VYQGPRENVLEFF+
Sbjct: 358 TYQIVNSMRQYIHILNGTALISLLQPAPETYELFDDIILISDGQVVYQGPRENVLEFFQH 417
Query: 421 MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDEL 480
MGF CP+RKGVADFLQEVTSRKDQEQYW +DE Y FV+ +EFSE F SFH+G+KLGDEL
Sbjct: 418 MGFTCPQRKGVADFLQEVTSRKDQEQYWTKRDEVYRFVSVEEFSEAFXSFHVGKKLGDEL 477
Query: 481 ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAM 540
ATPFDKSKSHPAALTT+KYGASKKELLKAC +RE LLMKRNSFVY FK+ Q+ A V M
Sbjct: 478 ATPFDKSKSHPAALTTEKYGASKKELLKACISRELLLMKRNSFVYIFKLIQLILMAFVTM 537
Query: 541 TLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAW 600
TLF RTEMHR TV+DG +YMGALFFA+I IMFNGFSEL++TI+KLPVFYKQRDFLFFP W
Sbjct: 538 TLFFRTEMHRRTVDDGSVYMGALFFAIIIIMFNGFSELALTILKLPVFYKQRDFLFFPPW 597
Query: 601 AYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMG 660
AYS+PTWILKIPITF+EVGIWV MTYYVVGF+ N RF K + +LL VNQ AS LFRL+G
Sbjct: 598 AYSIPTWILKIPITFVEVGIWVVMTYYVVGFDPNAGRFFKHFLMLLFVNQMASALFRLIG 657
Query: 661 ALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLG 720
ALGRNIIVANTFGSFA LTVLVLGGF+L+RDDV WW+WGYW SPMMY QN +AVNEFLG
Sbjct: 658 ALGRNIIVANTFGSFALLTVLVLGGFVLARDDVHPWWIWGYWISPMMYAQNGIAVNEFLG 717
Query: 721 KSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFG 780
W H PNS E LGV+ILKSRG+FP A WYWIGVGA +GY+LLFNFLFT+AL+YLDPF
Sbjct: 718 HKWRHPAPNSNESLGVLILKSRGIFPQASWYWIGVGATIGYILLFNFLFTIALQYLDPFE 777
Query: 781 KPQAILSEEALAKKNACKTE--EPVELSSGVQS---------------SYGEVRSFN-EA 822
KPQAI+S+E K+ K++ + +ELSS +S S V SF+ EA
Sbjct: 778 KPQAIVSKETSTDKSVKKSQDVQELELSSKGKSSSERTENQISLSSRTSSARVGSFSEEA 837
Query: 823 DQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTAL 882
+QN+KRGM+LPFEPHSITFD+IRYA+DMPQEMK+QG+ +DRLE LKGVSG+FRPGVLTAL
Sbjct: 838 NQNKKRGMVLPFEPHSITFDEIRYAVDMPQEMKSQGVTEDRLELLKGVSGSFRPGVLTAL 897
Query: 883 MGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942
MGVSGAGKTTLMDVLAGRKTGGY+ G+ITISGYPK QETFARI+GYCEQTDIHSPHVTVY
Sbjct: 898 MGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARIAGYCEQTDIHSPHVTVY 957
Query: 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA 1002
ESLVYSAWLRLPP+VDS TRKMFVEEVMEL+ELNP+R+A+VGLPGVSGLSTEQRKRLTIA
Sbjct: 958 ESLVYSAWLRLPPDVDSATRKMFVEEVMELIELNPLRDAIVGLPGVSGLSTEQRKRLTIA 1017
Query: 1003 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL 1062
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL
Sbjct: 1018 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELF 1077
Query: 1063 LMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINF 1122
L++RGGEEIYVGP+GRH SQLI+YFE I+GVPKIK+GYNPATWMLE+TT AQE LG+NF
Sbjct: 1078 LLRRGGEEIYVGPVGRHSSQLIEYFESIEGVPKIKDGYNPATWMLEITTAAQETTLGVNF 1137
Query: 1123 AKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPP 1182
+YK+SELY+ NK +IKELS+P S LYF T+YSQSFF QC+ACLWKQHLSYWRNPP
Sbjct: 1138 NTLYKDSELYRRNKALIKELSVPNENSNELYFPTKYSQSFFIQCIACLWKQHLSYWRNPP 1197
Query: 1183 YTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVA 1242
Y+AVR FTTFIALMFGTIFWD+GSKR +QDLFNAMGSMYAA+LF+GVQNATSVQPVVA
Sbjct: 1198 YSAVRFLFTTFIALMFGTIFWDLGSKRGTQQDLFNAMGSMYAAVLFIGVQNATSVQPVVA 1257
Query: 1243 VERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYL 1302
+ERTVFYRERAAGMYSALPYAFGQVVIELP+IFIQ V+YGVIVY MIGF+WT +KF WY+
Sbjct: 1258 IERTVFYRERAAGMYSALPYAFGQVVIELPYIFIQTVVYGVIVYGMIGFEWTAAKFFWYI 1317
Query: 1303 LFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCW 1362
FMY T LYFT YGMMTVAVTPNHNIAAI++SAFY WNLFSGFI+PR R+PIWWRWY W
Sbjct: 1318 FFMYFTLLYFTFYGMMTVAVTPNHNIAAIVSSAFYGFWNLFSGFIVPRTRIPIWWRWYYW 1377
Query: 1363 ICPVSWTLYGLVASQFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGF 1422
ICPV+WTLYGLV SQFGD+ND DS Q V +FV +YFGY +D LGVVA VHVG+ VLFGF
Sbjct: 1378 ICPVAWTLYGLVTSQFGDINDPMDSNQTVAEFVSNYFGYKYDFLGVVAAVHVGITVLFGF 1437
Query: 1423 TFAYSIKAFNFQHR 1436
FA+SIK FNFQ R
Sbjct: 1438 IFAFSIKVFNFQKR 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2424 bits (6281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1130/1444 (78%), Positives = 1284/1444 (88%), Gaps = 18/1444 (1%)
Query: 9 RISSARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQRGMLTEDEG 68
R+ SARL SS IWRN TL++F++SSR++ DD+EAL WAA+EKLPTYLR++RG+L E G
Sbjct: 8 RVGSARLSSSDIWRNTTLEIFSKSSRDE--DDEEALKWAALEKLPTYLRIRRGILIEQGG 65
Query: 69 QAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNV 128
Q+RE+DI +LG IE+RNL+ERL+KIAEEDNEKFLLKLKDRI++VGLD+PTIEVRFEHL+V
Sbjct: 66 QSREIDINSLGLIEKRNLLERLVKIAEEDNEKFLLKLKDRIDKVGLDMPTIEVRFEHLSV 125
Query: 129 EAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGP 188
EAEAY+GSRALPT+FN NM E FLNYLH+LPSRKKPL+IL+DVSGIIKP+R+TLLLGP
Sbjct: 126 EAEAYVGSRALPTMFNFSVNMFEAFLNYLHILPSRKKPLSILNDVSGIIKPRRMTLLLGP 185
Query: 189 PSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248
PSSGKTTLLLALAGKL KDLKFSGRVTYNGHGMEEFVPQRTSAYISQ D+HIGEMTVRET
Sbjct: 186 PSSGKTTLLLALAGKLTKDLKFSGRVTYNGHGMEEFVPQRTSAYISQYDIHIGEMTVRET 245
Query: 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL 308
LAFSARCQGVG RYE+L EL+RREK ANIKPDPDID+ MKAA+LEGQE NVVTDY+LKIL
Sbjct: 246 LAFSARCQGVGSRYEMLMELARREKEANIKPDPDIDIYMKAAALEGQEANVVTDYILKIL 305
Query: 309 GLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSL 368
GLE+CADT+VGDEM RGISGGQ+KR+TTGEMLVGPA+ALFMDEISTGLDS+TT+QIVNSL
Sbjct: 306 GLELCADTLVGDEMARGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSTTTFQIVNSL 365
Query: 369 RQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPER 428
RQS+HIL+GTA+I+LLQPAPET+ELFDD+ILLSDGQIVYQGPRENVL+FFE MGFKCPER
Sbjct: 366 RQSVHILSGTALIALLQPAPETFELFDDIILLSDGQIVYQGPRENVLDFFEYMGFKCPER 425
Query: 429 KGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSK 488
KGVADFLQEVTSRKDQEQYWA+KD+PY FV+ EFSE FQSFHIG+KLGDELATPFDKSK
Sbjct: 426 KGVADFLQEVTSRKDQEQYWAHKDQPYLFVSVNEFSEAFQSFHIGRKLGDELATPFDKSK 485
Query: 489 SHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEM 548
+HP +LTTKKYG SKKEL KAC +REYLLMKRNSFVY FKM Q+ + MTLFLRTEM
Sbjct: 486 AHPDSLTTKKYGVSKKELFKACISREYLLMKRNSFVYIFKMTQLIILGFITMTLFLRTEM 545
Query: 549 HRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWI 608
HR+T DGG+Y+GALFF V TIMFNGFSEL+MTI+KLPVFYKQRD LF+P+WAY+LPTWI
Sbjct: 546 HRNTETDGGVYLGALFFTVTTIMFNGFSELAMTILKLPVFYKQRDLLFYPSWAYALPTWI 605
Query: 609 LKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIV 668
LKIPITF+EV +WV MTYYV+GF+ NI+RF KQY +LL NQ AS LFRL ALGRNIIV
Sbjct: 606 LKIPITFVEVAVWVVMTYYVIGFDPNIQRFFKQYLILLITNQMASALFRLTAALGRNIIV 665
Query: 669 ANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPP 728
ANT G+FA LT LVLGGF++SRD+VKKWW+WGYWFSPMMY QNA++VNEFLG SW H PP
Sbjct: 666 ANTVGAFAMLTALVLGGFVISRDNVKKWWIWGYWFSPMMYVQNAISVNEFLGSSWNHFPP 725
Query: 729 NSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSE 788
NST+PLGV +LKSRGLFP AYWYWIG GAL GY+ LFNFLFT+ALKYLDPFGKPQAI+S+
Sbjct: 726 NSTKPLGVTLLKSRGLFPEAYWYWIGFGALTGYIFLFNFLFTLALKYLDPFGKPQAIISK 785
Query: 789 EALAKKNACKTEEPVELSS----------------GVQSSYGEVRSFNEADQNRKRGMIL 832
EA ++K A +T E +ELSS ++S V S + A +N KRGM+L
Sbjct: 786 EAYSEKTAVRTGEFIELSSKEKNFQERGSASHRVASSRTSSARVSSLSNAFENSKRGMVL 845
Query: 833 PFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTT 892
PF+P SITF D+RYA+ MPQEMK QGI +DRLE LKGVSGAFRPGVLTALMGVSGAGKTT
Sbjct: 846 PFQPLSITFADVRYAVQMPQEMKTQGITEDRLELLKGVSGAFRPGVLTALMGVSGAGKTT 905
Query: 893 LMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLR 952
LMDVLAGRKTGGY+ G+ITISGYPK QETFARISGYCEQTDIHSPHVTVYESL+YSAWLR
Sbjct: 906 LMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQTDIHSPHVTVYESLLYSAWLR 965
Query: 953 LPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1012
LPPEVDSDTR MFVEEVMELVEL +REALVGLPGV+GLS EQRKRLT+AVELVANPSII
Sbjct: 966 LPPEVDSDTRNMFVEEVMELVELTSLREALVGLPGVNGLSVEQRKRLTVAVELVANPSII 1025
Query: 1013 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072
FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL+KRGGEEIY
Sbjct: 1026 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIY 1085
Query: 1073 VGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELY 1132
VGP+GRH LIKYFE I+G+PKIK+GYNPATWMLEVTT AQE ALG++F+ +YKNSELY
Sbjct: 1086 VGPVGRHACHLIKYFEDIEGIPKIKDGYNPATWMLEVTTTAQEVALGVDFSDIYKNSELY 1145
Query: 1133 KGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTT 1192
+ NK +IKELS P PGSK+LYF T+YS+SF TQCMACLWKQH SYWRNPPYTAVRL F T
Sbjct: 1146 RKNKALIKELSRPLPGSKDLYFPTQYSKSFTTQCMACLWKQHWSYWRNPPYTAVRLVFAT 1205
Query: 1193 FIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRER 1252
FIALMFGTIFW +G+KR+ RQD+FNAMGSMYAA+LFLG N+T+VQPVVA+ERTVFYRER
Sbjct: 1206 FIALMFGTIFWKLGTKRSRRQDIFNAMGSMYAAVLFLGFHNSTAVQPVVAIERTVFYRER 1265
Query: 1253 AAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYF 1312
AAGMYSAL YAFGQV+IE+P+I IQ +IYGVIVYAM+GF+WT+SKF WYL FMY T LYF
Sbjct: 1266 AAGMYSALAYAFGQVMIEVPYILIQTIIYGVIVYAMVGFEWTISKFFWYLFFMYFTLLYF 1325
Query: 1313 TLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYG 1372
T YGMM VA+TPNHNIAAI++SAFY +WN+FSGFI+PR R+PIWWRWY W CP++WTLYG
Sbjct: 1326 TFYGMMNVAITPNHNIAAIVSSAFYAIWNIFSGFIVPRTRIPIWWRWYYWACPIAWTLYG 1385
Query: 1373 LVASQFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFN 1432
LVASQFGD+ + D+G+ V F++ YFG+ HD +G+VAVV VG+ VLFGF FA+SI+ FN
Sbjct: 1386 LVASQFGDIKEELDTGETVEHFLRSYFGFQHDFVGIVAVVLVGICVLFGFLFAFSIRTFN 1445
Query: 1433 FQHR 1436
FQ R
Sbjct: 1446 FQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515478|ref|XP_003526427.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2414 bits (6255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1145/1452 (78%), Positives = 1295/1452 (89%), Gaps = 20/1452 (1%)
Query: 1 MDAGQASFRISSARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQR 60
M++G+ R++SAR+GSS +WR+ ++DVF+ SSR D DD++ L WAAIEKLPTYLR+ R
Sbjct: 1 MESGE--LRVASARIGSSGVWRSGSIDVFSGSSRRD--DDEQELKWAAIEKLPTYLRMTR 56
Query: 61 GMLTEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIE 120
G+LTE EGQ E+DI L ++R+NL+ERL+KIAE+DNEKFL KL+DRI+RVGL+IPTIE
Sbjct: 57 GILTETEGQPTEIDINKLCPLQRKNLVERLVKIAEQDNEKFLFKLRDRIDRVGLEIPTIE 116
Query: 121 VRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQ 180
+RFEHLNVEAEA++GSRALPT+FN C N+ EGFLN LH++PSRKKP T+L DVSGIIKP+
Sbjct: 117 IRFEHLNVEAEAHVGSRALPTIFNFCINLFEGFLNSLHLIPSRKKPFTVLDDVSGIIKPK 176
Query: 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI 240
R+TLLLGPPSSGKTTLLLALAG+L KDLKFSGRV+YNGHGMEEFVPQRTSAYISQ DLHI
Sbjct: 177 RMTLLLGPPSSGKTTLLLALAGRLSKDLKFSGRVSYNGHGMEEFVPQRTSAYISQTDLHI 236
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
GEMTVRETLAFSARCQG+G RYE+L ELSRREKAANIKPDPD+D+ MKAA+LEGQE NVV
Sbjct: 237 GEMTVRETLAFSARCQGIGTRYEMLAELSRREKAANIKPDPDLDIYMKAAALEGQETNVV 296
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
TDY++KILGLEVCADTMVGD+M+RGISGGQ+KR+TTGEMLVGPARALFMDEISTGLDSST
Sbjct: 297 TDYIMKILGLEVCADTMVGDDMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDSST 356
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
T+Q+VNSLRQSIHILNGTAVISLLQPAPETYELFDD+ILLSDGQIVYQGPRENVLEFFE
Sbjct: 357 TFQMVNSLRQSIHILNGTAVISLLQPAPETYELFDDIILLSDGQIVYQGPRENVLEFFEY 416
Query: 421 MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDEL 480
MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVT KEF+E FQSFH G+KLGDEL
Sbjct: 417 MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTVKEFAEAFQSFHAGRKLGDEL 476
Query: 481 ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAM 540
ATPFD SK HPA LT K+G KKELLKAC +RE+LLMKRNSFVY FKM+Q+ + + M
Sbjct: 477 ATPFDMSKGHPAVLTKNKFGVCKKELLKACVSREFLLMKRNSFVYIFKMWQLILTGFITM 536
Query: 541 TLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAW 600
TLFLRTEMHR T DGGIYMGALFF +I IMFNG+SELSM+IMKLPVFYKQRD LFFP W
Sbjct: 537 TLFLRTEMHRDTETDGGIYMGALFFVLIVIMFNGYSELSMSIMKLPVFYKQRDLLFFPCW 596
Query: 601 AYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMG 660
AYSLPTWILKIPIT +EVGIWV MTYYV+GF+ +IERF+KQYFLL+C+NQ ASGLFR MG
Sbjct: 597 AYSLPTWILKIPITLVEVGIWVVMTYYVIGFDPSIERFIKQYFLLVCINQMASGLFRFMG 656
Query: 661 ALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLG 720
A+GRNIIVANT GSFA L V+V+GGFILSR DVKKWWLWGYWFSPMMYGQNALAVNEFLG
Sbjct: 657 AVGRNIIVANTVGSFALLAVMVMGGFILSRVDVKKWWLWGYWFSPMMYGQNALAVNEFLG 716
Query: 721 KSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFG 780
KSW HV PNSTEPLGV +LKSRG+FP AYWYWIGVGA +GY+LLFNFLF +AL YLDPFG
Sbjct: 717 KSWSHVTPNSTEPLGVKVLKSRGIFPKAYWYWIGVGASIGYMLLFNFLFPLALHYLDPFG 776
Query: 781 KPQAILSEEALAKKNACKTEEPVELSSGVQSS----------------YGEVRSFNEADQ 824
KPQA++SEEALA++NA + E +ELSS ++ S V ++
Sbjct: 777 KPQALISEEALAERNAGRNEHIIELSSRIKGSSDKGNESRRNVSSRTLSARVGGIGASEH 836
Query: 825 NRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMG 884
N+KRGM+LPF P SITFD+IRY+++MPQEMK+QGI +DRLE LKGV+GAFRPGVLTALMG
Sbjct: 837 NKKRGMVLPFTPLSITFDEIRYSVEMPQEMKSQGILEDRLELLKGVNGAFRPGVLTALMG 896
Query: 885 VSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944
VSGAGKTTLMDVL+GRKT GY+ G ITISGYPK QETFARI+GYCEQTDIHSPHVTVYES
Sbjct: 897 VSGAGKTTLMDVLSGRKTAGYIQGQITISGYPKRQETFARIAGYCEQTDIHSPHVTVYES 956
Query: 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVE 1004
LVYSAWLRLPPEVDS TR+MF+EEVMELVEL +REALVGLPGV+GLSTEQRKRLTIAVE
Sbjct: 957 LVYSAWLRLPPEVDSSTRQMFIEEVMELVELTSLREALVGLPGVNGLSTEQRKRLTIAVE 1016
Query: 1005 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064
LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL+
Sbjct: 1017 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLL 1076
Query: 1065 KRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAK 1124
KRGGEEIYVGPLG+HCS LI +FEGI+GVPKIK GYNPATWMLEVT+ AQEAALG+NFA+
Sbjct: 1077 KRGGEEIYVGPLGQHCSHLINHFEGINGVPKIKNGYNPATWMLEVTSEAQEAALGVNFAE 1136
Query: 1125 VYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYT 1184
+YKNS+LY+ NK +I+EL+ PP GSK+LYF T+YSQ+FFTQCMACLWKQHLSYWRNPPY+
Sbjct: 1137 IYKNSDLYRRNKALIRELTTPPTGSKDLYFPTKYSQTFFTQCMACLWKQHLSYWRNPPYS 1196
Query: 1185 AVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVE 1244
AVRL FTT IAL+FGTIFWDIGSKR +QDLFNAMGSMYAA+LF+G+QNATSVQPVVA+E
Sbjct: 1197 AVRLLFTTIIALLFGTIFWDIGSKRQRKQDLFNAMGSMYAAVLFIGIQNATSVQPVVAIE 1256
Query: 1245 RTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLF 1304
RTVFYRERAAGMYSALPYAFGQV IE+P+IFIQ ++YGVIVYAMIGFDWT SKF WYL F
Sbjct: 1257 RTVFYRERAAGMYSALPYAFGQVAIEIPYIFIQTLVYGVIVYAMIGFDWTFSKFFWYLFF 1316
Query: 1305 MYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWIC 1364
M+ TFLYFT YGMM V +TP+HN+AAI++ FY++WNLFSGF+IPR RMP+WWRWY WIC
Sbjct: 1317 MFFTFLYFTFYGMMAVGLTPDHNVAAIVSFGFYMIWNLFSGFVIPRTRMPVWWRWYFWIC 1376
Query: 1365 PVSWTLYGLVASQFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTF 1424
PVSWTLYGLV SQFGD+ + D+G+ V +FV+ YFGY D +GV A V VG +LFGFTF
Sbjct: 1377 PVSWTLYGLVTSQFGDIKEPIDTGETVEEFVRSYFGYRDDFVGVAAAVLVGFTLLFGFTF 1436
Query: 1425 AYSIKAFNFQHR 1436
A+SIKAFNFQ R
Sbjct: 1437 AFSIKAFNFQKR 1448
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147864006|emb|CAN80954.1| hypothetical protein VITISV_032205 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2403 bits (6227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1129/1447 (78%), Positives = 1281/1447 (88%), Gaps = 30/1447 (2%)
Query: 8 FRISSARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQRGMLTEDE 67
+R++SARL SS+IWRN+ ++VF+RSSR++ DD+EAL WAAIEKLPTYLR++RG+L E+E
Sbjct: 7 YRVNSARLSSSNIWRNSGMEVFSRSSRDE--DDEEALKWAAIEKLPTYLRIRRGILAEEE 64
Query: 68 GQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLN 127
G+ARE+DI +LG IE++NL+ERL+KIAEEDNEKFLLKLK+RI+RVGLDIPTIEVRFEH+
Sbjct: 65 GKAREIDITSLGLIEKKNLLERLVKIAEEDNEKFLLKLKERIDRVGLDIPTIEVRFEHIT 124
Query: 128 VEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLG 187
V+AEAYIG RALPT+ N ANMLEGFLNYLH+LPSRKKPL ILHDVSGIIKP R+TLLLG
Sbjct: 125 VDAEAYIGGRALPTIINFSANMLEGFLNYLHILPSRKKPLPILHDVSGIIKPGRMTLLLG 184
Query: 188 PPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247
PPSSGKTTLLL LAGKLG DLK SGRV+YNGHGM+EFVPQR+SAYISQ DLHIGEMTVRE
Sbjct: 185 PPSSGKTTLLLTLAGKLGSDLKLSGRVSYNGHGMDEFVPQRSSAYISQYDLHIGEMTVRE 244
Query: 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKI 307
TLAFSARCQGVG Y++L ELSRREK ANIKPDPDID+ MKAA+L+GQ +++TDY+LKI
Sbjct: 245 TLAFSARCQGVGTGYDMLAELSRREKVANIKPDPDIDIYMKAAALKGQGGSLITDYILKI 304
Query: 308 LGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNS 367
LGLE CADT+VGDEM+RGISGGQ++RLTTGEMLVGPA+ALFMDEISTGLDSSTT+QIVNS
Sbjct: 305 LGLEXCADTIVGDEMVRGISGGQKRRLTTGEMLVGPAKALFMDEISTGLDSSTTFQIVNS 364
Query: 368 LRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPE 427
+RQSIHIL GTA+ISLLQPAPETY+LFDD+ILLSDGQIVYQGPRENVLEFFE MGFKCPE
Sbjct: 365 IRQSIHILKGTAIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEHMGFKCPE 424
Query: 428 RKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKS 487
RKGVADFLQEVTS+KDQEQYWA++ EPYSFVT EFSE FQSFH+G++LGDELA PFDK+
Sbjct: 425 RKGVADFLQEVTSKKDQEQYWAHRGEPYSFVTVTEFSEAFQSFHVGRRLGDELAIPFDKA 484
Query: 488 KSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTE 547
K+H AALTTKKYG SK ELLKAC +RE LLMKRNSFVY FKM Q+ A + MTLFLRT+
Sbjct: 485 KAHTAALTTKKYGVSKXELLKACISRELLLMKRNSFVYIFKMSQLILLAFIMMTLFLRTD 544
Query: 548 MHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTW 607
M R T+ DG I++G++FF ++ IMFNGFSEL++TIMKLPVFYKQRD LF+P+WAYSLPTW
Sbjct: 545 MPRKTIADGWIFLGSMFFTLMMIMFNGFSELALTIMKLPVFYKQRDLLFYPSWAYSLPTW 604
Query: 608 ILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNII 667
ILKIPIT +EV IWVFMTYYVVGF+ NIERF +QY LLLCVNQ ASGL RLM ALGRNII
Sbjct: 605 ILKIPITLVEVAIWVFMTYYVVGFDPNIERFFRQYLLLLCVNQMASGLLRLMAALGRNII 664
Query: 668 VANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVP 727
VANTFGSFA L VLV+GGF+LS+DDVK WW+WGYW SPMMYGQNA+AVNEFLGKSW HVP
Sbjct: 665 VANTFGSFALLAVLVMGGFVLSKDDVKPWWMWGYWISPMMYGQNAIAVNEFLGKSWRHVP 724
Query: 728 PNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILS 787
N+TEPLGV++LKSRG+FP AYWYW+GVGAL+GYV LFNFLFTVAL YL+P+GK Q +LS
Sbjct: 725 ENATEPLGVLVLKSRGIFPEAYWYWLGVGALIGYVFLFNFLFTVALAYLNPYGKHQTVLS 784
Query: 788 EEALAKKNACKTEEPVELSSGVQSSYGE-VRSFNEADQNRKRGMILPFEPHSITFDDIRY 846
EE L +++ S G S+ G+ +RS + + +RGMILPFEP SI FD+IRY
Sbjct: 785 EETLTEQS----------SRGTSSTGGDKIRSGSSRSLSARRGMILPFEPLSIXFDEIRY 834
Query: 847 ALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV 906
A+DMPQEMKAQGIP++RLE LKGVSG+FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY+
Sbjct: 835 AVDMPQEMKAQGIPENRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 894
Query: 907 SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFV 966
GSI ISGYPKNQ+TFARISGYCEQTDIHSPHVTVYESL+YSAWLRLPPEVDS TRKMF+
Sbjct: 895 DGSIKISGYPKNQKTFARISGYCEQTDIHSPHVTVYESLLYSAWLRLPPEVDSATRKMFI 954
Query: 967 EEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
EEVMELVELN +R+ALVGLPGV GLSTEQRKRLT+AVELVANPSIIFMDEPTSGLDARAA
Sbjct: 955 EEVMELVELNSLRQALVGLPGVDGLSTEQRKRLTVAVELVANPSIIFMDEPTSGLDARAA 1014
Query: 1027 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKY 1086
AIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL L+KRGGEEIY GPLG H + LIKY
Sbjct: 1015 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLKRGGEEIYAGPLGHHSAHLIKY 1074
Query: 1087 FE-----------------GIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNS 1129
FE GIDGV KIK+GYNPATWMLEVT+ AQEAALGINF VYKNS
Sbjct: 1075 FEVRSINTRDSRSSPYLPLGIDGVSKIKDGYNPATWMLEVTSAAQEAALGINFTDVYKNS 1134
Query: 1130 ELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLF 1189
ELY+ NK +IKELS PPPGSK+LYF T+YSQSFF QC CLWKQH SYWRNP YTAVRL
Sbjct: 1135 ELYRRNKALIKELSTPPPGSKDLYFPTQYSQSFFAQCKTCLWKQHWSYWRNPSYTAVRLL 1194
Query: 1190 FTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFY 1249
FTTFIA+MFGTIFWD+GS+R +QDLFNAMGSMY A+LF+G QNATSVQPVVA+ERTVFY
Sbjct: 1195 FTTFIAVMFGTIFWDLGSRRQRQQDLFNAMGSMYCAVLFIGAQNATSVQPVVAIERTVFY 1254
Query: 1250 RERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTF 1309
RE+AAGMYSALPYAFGQV+IELP+I IQ +IYGVIVYAMIGFDWT++KF WY+ FMY TF
Sbjct: 1255 REKAAGMYSALPYAFGQVMIELPYILIQTIIYGVIVYAMIGFDWTMTKFFWYIFFMYFTF 1314
Query: 1310 LYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWT 1369
LYFT YGMM VAV+PNHNIAAII+SAFY +WNLFSGFI+PR R+P+WWRWY W CP+SWT
Sbjct: 1315 LYFTFYGMMAVAVSPNHNIAAIISSAFYAIWNLFSGFIVPRTRIPVWWRWYYWCCPISWT 1374
Query: 1370 LYGLVASQFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIK 1429
LYGL+ SQFGD+ D D+G+ + DFV+ YFG+ +D LG+VAVV VG+ VLFGFTFAYSI+
Sbjct: 1375 LYGLIGSQFGDMKDKLDTGETIEDFVRSYFGFRNDFLGIVAVVIVGITVLFGFTFAYSIR 1434
Query: 1430 AFNFQHR 1436
AFNFQ R
Sbjct: 1435 AFNFQKR 1441
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|375273923|gb|AFA43815.1| ABCG/PDR subfamily ABC transporter [Petunia axillaris] | Back alignment and taxonomy information |
|---|
Score = 2398 bits (6214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1132/1454 (77%), Positives = 1283/1454 (88%), Gaps = 20/1454 (1%)
Query: 1 MDAGQASFRISSARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQR 60
M+ G+ FR+SSARL SS++WRN+ +DVF+RSSRE DD+EAL WAA+EKLPTYLR++R
Sbjct: 1 MEGGEELFRVSSARLSSSNVWRNSAMDVFSRSSREA--DDEEALKWAALEKLPTYLRIRR 58
Query: 61 GMLTEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIE 120
G+LTE+EGQ+REVDI L +ERRNL+ERL+KI +EDNEKFLLKLK+RI+RVGLD+PTIE
Sbjct: 59 GILTEEEGQSREVDITKLDLVERRNLLERLIKITDEDNEKFLLKLKERIDRVGLDLPTIE 118
Query: 121 VRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQ 180
VRFEHL+V+AEA +GSRALPTVFN N+LE FLNYLH+LP+RK+PL ILHDVSGIIKP
Sbjct: 119 VRFEHLSVDAEARVGSRALPTVFNFTVNILEDFLNYLHILPNRKQPLPILHDVSGIIKPG 178
Query: 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI 240
R+TLLLGPPSSGKTTLLLALAGKL KDLK SGRVTYNGH M EFV QR+SAYISQ DLHI
Sbjct: 179 RMTLLLGPPSSGKTTLLLALAGKLDKDLKVSGRVTYNGHDMNEFVAQRSSAYISQYDLHI 238
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
GEMTVRETLAFSARCQGVG +YE+L ELSRREK ANIKPDPD+D+ MKAA EGQE NVV
Sbjct: 239 GEMTVRETLAFSARCQGVGAKYEILAELSRREKEANIKPDPDVDIFMKAAWNEGQEANVV 298
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
TDY LKILGLE+CADT+VGDEM+ GISGGQRKRLTTGEM+VGPARALFMDEISTGLDSST
Sbjct: 299 TDYTLKILGLEICADTIVGDEMIPGISGGQRKRLTTGEMMVGPARALFMDEISTGLDSST 358
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
TYQIVNS+RQSIHIL GTAVISLLQPAPETY+LFDD+ILLSDGQIVYQGPRENVLEFFE
Sbjct: 359 TYQIVNSIRQSIHILQGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEY 418
Query: 421 MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDEL 480
MGF CPERKGVADFLQEVTSRKDQEQYWA ++E Y F+T +EFSE FQ+FHIG+KLGDEL
Sbjct: 419 MGFICPERKGVADFLQEVTSRKDQEQYWARREESYKFITVREFSEAFQAFHIGRKLGDEL 478
Query: 481 ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAM 540
A PFDKSKSHPAALTTK+YG SKKELLKAC AREYLLMKRNSFVY FKM Q+ AS+ M
Sbjct: 479 AVPFDKSKSHPAALTTKRYGVSKKELLKACTAREYLLMKRNSFVYIFKMIQLTLMASITM 538
Query: 541 TLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAW 600
TLFLRTEMHR+T DG +++GALF+A+I IMFNGFSEL+++IMKLP FYK RD LFFP W
Sbjct: 539 TLFLRTEMHRNTTIDGAVFLGALFYALIMIMFNGFSELALSIMKLPSFYKHRDLLFFPPW 598
Query: 601 AYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMG 660
AY+LPTWILKIPIT +EV IWV MTYYV+GFE+++ RF KQ LL+CVNQ ASGLFRLMG
Sbjct: 599 AYALPTWILKIPITLVEVAIWVCMTYYVIGFEADVGRFFKQLLLLICVNQMASGLFRLMG 658
Query: 661 ALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLG 720
ALGRNIIVANTFGSF LTVLV+GGF+LSRDDVKKWW+WGYW SPMMY QNA+AVNEFLG
Sbjct: 659 ALGRNIIVANTFGSFVLLTVLVMGGFVLSRDDVKKWWIWGYWISPMMYAQNAIAVNEFLG 718
Query: 721 KSWGHVPPN--STEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDP 778
KSW HVPPN STE LGV LKSRG+FP+A WYWIG GAL+GYV LFNFLF VAL YL+P
Sbjct: 719 KSWAHVPPNSTSTETLGVSFLKSRGIFPDARWYWIGAGALIGYVFLFNFLFAVALAYLNP 778
Query: 779 FGKPQAILSEEALAKKNACKTEEPVELSSGVQSSYGE----------------VRSFNEA 822
FGKPQA+LSEE +A++NA K E +ELSS +SS + V S A
Sbjct: 779 FGKPQAVLSEETVAERNASKRGEVIELSSLGKSSSEKGNDVRRSASSRSMSSRVGSITAA 838
Query: 823 DQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTAL 882
D +++RGMILPFEP SITFDDIRYA+DMPQEMKAQG +DRLE L+GVSGAFRPGVLTAL
Sbjct: 839 DLSKRRGMILPFEPLSITFDDIRYAVDMPQEMKAQGFTEDRLELLRGVSGAFRPGVLTAL 898
Query: 883 MGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942
MGVSGAGKTTLMDVLAGRKTGGY+ G+I+ISGYPK QETFARI+GYCEQTDIHSPHVTVY
Sbjct: 899 MGVSGAGKTTLMDVLAGRKTGGYIDGTISISGYPKQQETFARIAGYCEQTDIHSPHVTVY 958
Query: 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA 1002
ESL +SAWLRLP EVD+ TRKMF+EEVMEL+EL P+R+ALVGLPGV+GLSTEQRKRLT+A
Sbjct: 959 ESLQFSAWLRLPREVDTATRKMFIEEVMELIELIPLRDALVGLPGVNGLSTEQRKRLTVA 1018
Query: 1003 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL 1062
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL
Sbjct: 1019 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL 1078
Query: 1063 LMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINF 1122
L+KRGGEEIYVGPLGR S LIKYFEGIDGVPKIK+GYNPATWMLE+T+ AQE ALG +F
Sbjct: 1079 LLKRGGEEIYVGPLGRQSSHLIKYFEGIDGVPKIKDGYNPATWMLEITSVAQEGALGNDF 1138
Query: 1123 AKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPP 1182
++YKNSELY+ NK +IKELS+P SK+LYF T+YSQSFFTQCMAC WKQH SYWRNPP
Sbjct: 1139 TELYKNSELYRRNKALIKELSVPASCSKDLYFPTKYSQSFFTQCMACFWKQHWSYWRNPP 1198
Query: 1183 YTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVA 1242
YTAVR+ FT FIALMFGTIFWD+GS+R +QDL NA+GSMY A+LFLGVQNAT+VQPV+A
Sbjct: 1199 YTAVRIMFTFFIALMFGTIFWDLGSRRERQQDLLNAIGSMYIAVLFLGVQNATTVQPVIA 1258
Query: 1243 VERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYL 1302
+ERTVFYRERAAGMYSA+PYAFGQV+IELP++F+Q +IYGVIVYAMIGF+WTV+KF WYL
Sbjct: 1259 IERTVFYRERAAGMYSAMPYAFGQVMIELPYLFLQTIIYGVIVYAMIGFEWTVAKFFWYL 1318
Query: 1303 LFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCW 1362
FMY T LYFTLYGMMTVAVTPNH+IAAII+SAFY +WNLF GFI+P+ RMP+WWRWY +
Sbjct: 1319 FFMYFTLLYFTLYGMMTVAVTPNHSIAAIISSAFYAVWNLFCGFIVPKTRMPVWWRWYYY 1378
Query: 1363 ICPVSWTLYGLVASQFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGF 1422
ICP+SWTLYGL+ASQFGD+ D D+ + V F++++F + HD +G VA++ VG+ VLF F
Sbjct: 1379 ICPISWTLYGLIASQFGDIQDRLDTNETVEQFIENFFDFKHDFVGYVALILVGISVLFLF 1438
Query: 1423 TFAYSIKAFNFQHR 1436
FA+SIK FNFQ R
Sbjct: 1439 IFAFSIKTFNFQKR 1452
|
Source: Petunia axillaris Species: Petunia axillaris Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|375273925|gb|AFA43816.1| ABCG/PDR subfamily ABC protein [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 2395 bits (6207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1131/1454 (77%), Positives = 1282/1454 (88%), Gaps = 20/1454 (1%)
Query: 1 MDAGQASFRISSARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQR 60
M+ G+ FR+SSARL SS++WRN+ +DVF+RSSRE DD+EAL WAA+EKLPTYLR++R
Sbjct: 1 MEGGEELFRVSSARLSSSNVWRNSAMDVFSRSSREA--DDEEALKWAALEKLPTYLRIRR 58
Query: 61 GMLTEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIE 120
G+LTE+EGQ+REVDI L +ERRNL+ERL+KI +EDNEKFLLKLK+RI+RVGLD+PTIE
Sbjct: 59 GILTEEEGQSREVDITKLDLVERRNLLERLIKITDEDNEKFLLKLKERIDRVGLDLPTIE 118
Query: 121 VRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQ 180
VRFEHL+V+AEA +GSRALPTVFN N+LE FLNYLH+LP+RK+PL ILHDVSGIIKP
Sbjct: 119 VRFEHLSVDAEARVGSRALPTVFNFTVNILEDFLNYLHILPNRKQPLPILHDVSGIIKPG 178
Query: 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI 240
R+TLLLGPPSSGKTTLLLALAGKL KDLK SGRVTYNGH M EFV QR+SAYISQ DLHI
Sbjct: 179 RMTLLLGPPSSGKTTLLLALAGKLDKDLKVSGRVTYNGHDMNEFVAQRSSAYISQYDLHI 238
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
GEMTVRETLAFSARCQGVG +YE+L ELSRREK ANIKPDPD+D+ MKAA EGQE NVV
Sbjct: 239 GEMTVRETLAFSARCQGVGAKYEILAELSRREKEANIKPDPDVDIFMKAAWNEGQEANVV 298
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
TDY LKILGLE+CADT+VGDEM+RGISGGQRKRLTTGEM+VGPARALFMDEISTGLDSST
Sbjct: 299 TDYTLKILGLEICADTIVGDEMVRGISGGQRKRLTTGEMMVGPARALFMDEISTGLDSST 358
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
TYQIVNS+RQSIHIL GTAVISLLQPAPETY+LFDD+ILLSDGQIVYQGPRENVLEFFE
Sbjct: 359 TYQIVNSIRQSIHILQGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEY 418
Query: 421 MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDEL 480
MGF CPERKGVADFLQEVTSRKDQEQYWA ++E Y F+T +EFSE FQ+FHIG+KLGDEL
Sbjct: 419 MGFICPERKGVADFLQEVTSRKDQEQYWARREESYKFITVREFSEAFQAFHIGRKLGDEL 478
Query: 481 ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAM 540
A PFDKSKSHPAALTTK+YG SKKELLKAC AREYLLMKRNSFVY FKM Q+ AS+ M
Sbjct: 479 AVPFDKSKSHPAALTTKRYGVSKKELLKACTAREYLLMKRNSFVYIFKMIQLTLMASITM 538
Query: 541 TLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAW 600
TLFL TEMHR+T DG +++GALF+A+I IMFNGFSEL+++IMKLP FYK RD LFFP W
Sbjct: 539 TLFLPTEMHRNTTIDGAVFLGALFYALIMIMFNGFSELALSIMKLPSFYKHRDLLFFPPW 598
Query: 601 AYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMG 660
AY+LPTWILKIPIT +EV IWV MTYYV+GFE+++ RF KQ LL+CVNQ ASGLFRLMG
Sbjct: 599 AYALPTWILKIPITLVEVAIWVCMTYYVIGFEADVGRFFKQLLLLICVNQMASGLFRLMG 658
Query: 661 ALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLG 720
ALGRNIIVANTFGSF LTVLV+GGF+LSRDDVKKWW+WGYW SPMMY QNA+AVNEFLG
Sbjct: 659 ALGRNIIVANTFGSFVLLTVLVMGGFVLSRDDVKKWWIWGYWISPMMYAQNAIAVNEFLG 718
Query: 721 KSWGHVPPN--STEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDP 778
KSW HVPPN STE LGV LKSRG+FP+A WYWIG GAL+GYV LFNFLF VAL YL+P
Sbjct: 719 KSWAHVPPNSTSTETLGVSFLKSRGIFPDARWYWIGAGALIGYVFLFNFLFAVALAYLNP 778
Query: 779 FGKPQAILSEEALAKKNACKTEEPVELSSGVQSSYGE----------------VRSFNEA 822
FGKPQA+LSEE +A++NA K E +ELSS +SS + V S A
Sbjct: 779 FGKPQAVLSEETVAERNASKRGEVIELSSLGKSSSEKGNDVRRSASSRSMSSRVGSITAA 838
Query: 823 DQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTAL 882
D +++RGMILPFEP SITFDDIRYA+DMPQEMKAQG +DRLE L+GVSGAFRPGVLTAL
Sbjct: 839 DLSKRRGMILPFEPLSITFDDIRYAVDMPQEMKAQGFTEDRLELLRGVSGAFRPGVLTAL 898
Query: 883 MGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942
MGVSGAGKTTLMDVLAGRKTGGY+ G+I+ISGYPK QETFARI+GYCEQTDIHSPHVTVY
Sbjct: 899 MGVSGAGKTTLMDVLAGRKTGGYIDGTISISGYPKQQETFARIAGYCEQTDIHSPHVTVY 958
Query: 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA 1002
ESL +SAWLRLP EVD+ TRKMF+EEVMEL+EL P+R+ALVGLPGV+GLSTEQRKRLT+A
Sbjct: 959 ESLQFSAWLRLPREVDTATRKMFIEEVMELIELIPLRDALVGLPGVNGLSTEQRKRLTVA 1018
Query: 1003 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL 1062
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL
Sbjct: 1019 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL 1078
Query: 1063 LMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINF 1122
L+KRGGEEIYVGPLGR S LIKYFEGIDGVPKIK+GYNPATWMLE+T+ AQE ALG +F
Sbjct: 1079 LLKRGGEEIYVGPLGRQSSHLIKYFEGIDGVPKIKDGYNPATWMLEITSVAQEGALGNDF 1138
Query: 1123 AKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPP 1182
++YKNSELY+ NK +IKELS+P SK+LYF T+YSQSFFTQCMAC WKQH SYWRNPP
Sbjct: 1139 TELYKNSELYRRNKALIKELSVPASCSKDLYFPTKYSQSFFTQCMACFWKQHWSYWRNPP 1198
Query: 1183 YTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVA 1242
YTAVR+ FT FIALMFGTIFWD+GS+R +QDL NA+GSMY A+LFLGVQNAT+VQPV+A
Sbjct: 1199 YTAVRIMFTFFIALMFGTIFWDLGSRRERQQDLLNAIGSMYIAVLFLGVQNATTVQPVIA 1258
Query: 1243 VERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYL 1302
+ERTVFYRERAAGMYSA+PYAFGQV+IELP++F+Q +IYGVIVYAMIGF+WTV+KF WYL
Sbjct: 1259 IERTVFYRERAAGMYSAMPYAFGQVMIELPYLFLQTIIYGVIVYAMIGFEWTVAKFFWYL 1318
Query: 1303 LFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCW 1362
FMY T LYFTLYGMMTVAVTPN +IAAII+SAFY +WNLF GFI+P+ RMP+WWRWY +
Sbjct: 1319 FFMYFTLLYFTLYGMMTVAVTPNQSIAAIISSAFYAVWNLFCGFIVPKTRMPVWWRWYYY 1378
Query: 1363 ICPVSWTLYGLVASQFGDVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGF 1422
ICP+SWTLYGL+ASQFGD+ D D+ + V F++++F + HD +G VA++ VG+ VLF F
Sbjct: 1379 ICPISWTLYGLIASQFGDIQDRLDTNETVEQFIENFFDFKHDFVGYVALILVGISVLFLF 1438
Query: 1423 TFAYSIKAFNFQHR 1436
FA+SIK FNFQ R
Sbjct: 1439 IFAFSIKTFNFQKR 1452
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143069|ref|XP_002324840.1| predicted protein [Populus trichocarpa] gi|222866274|gb|EEF03405.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2387 bits (6187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1135/1437 (78%), Positives = 1292/1437 (89%), Gaps = 9/1437 (0%)
Query: 1 MDAGQASFRISSARLGSS-SIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQ 59
MD G +R+SSARL SS +IWRN+TLDVF+RSSR++ DD+EAL WAAIEKLPT LR++
Sbjct: 1 MDGGGDIYRVSSARLSSSSNIWRNSTLDVFSRSSRDE--DDEEALKWAAIEKLPTCLRMR 58
Query: 60 RGMLTEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTI 119
RG+LTE+EGQARE+DI +LG IE+RNL+ERL+KIAEEDNE+FLLKLK+RI RVGLDIPTI
Sbjct: 59 RGILTEEEGQAREIDIASLGLIEKRNLVERLVKIAEEDNERFLLKLKERIHRVGLDIPTI 118
Query: 120 EVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKP 179
EVRFEHL++EAEAY+G RALPT+FN ANMLEGFL++LH+LPSRK+P ILHD+SGIIKP
Sbjct: 119 EVRFEHLSIEAEAYVGGRALPTIFNFSANMLEGFLSFLHILPSRKQPFPILHDLSGIIKP 178
Query: 180 QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLH 239
+R+TLLLGPPSSGKTTLLLALAGKLGKDLK SG VTYNGHGM EFVPQRTSAYISQ DLH
Sbjct: 179 RRMTLLLGPPSSGKTTLLLALAGKLGKDLKSSGSVTYNGHGMAEFVPQRTSAYISQYDLH 238
Query: 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNV 299
IGEMTVRETL+FSARCQGVGPRYE+L ELSRRE+ ANIKPDPDID+ MKAA+LEGQE V
Sbjct: 239 IGEMTVRETLSFSARCQGVGPRYEMLTELSRREREANIKPDPDIDIFMKAAALEGQETTV 298
Query: 300 VTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSS 359
TDY+LKILGL++CADTMVGDEM+RGISGGQ+KRLTTGEMLVGPARALFMDEISTGLDSS
Sbjct: 299 TTDYILKILGLDICADTMVGDEMIRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSS 358
Query: 360 TTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFE 419
TT+QI NSLRQ+ HILNGT ISLLQPAPETY+LFDD+ILLS+G I+YQGPRENVLEFFE
Sbjct: 359 TTFQIANSLRQTTHILNGTTFISLLQPAPETYDLFDDIILLSEGLIIYQGPRENVLEFFE 418
Query: 420 RMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDE 479
+GFKCPERKGVADFLQEVTSRKDQEQYWA +D+PYSFV+AKEFSE FQSFHIG+KLGDE
Sbjct: 419 SLGFKCPERKGVADFLQEVTSRKDQEQYWACRDQPYSFVSAKEFSEAFQSFHIGRKLGDE 478
Query: 480 LATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVA 539
LATPFDKSKSHPAALTT+KYG SKKELLKAC +RE+LLMKRNSFVY FK Q+ AS+
Sbjct: 479 LATPFDKSKSHPAALTTEKYGVSKKELLKACISREFLLMKRNSFVYIFKFTQLIILASIT 538
Query: 540 MTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPA 599
MT+FLRTEMHR+T+ DGGIY+GALFFA+I IMFNGFSEL+MTIMKLP+FYKQRD LF+P
Sbjct: 539 MTIFLRTEMHRNTIVDGGIYLGALFFAIIVIMFNGFSELAMTIMKLPIFYKQRDLLFYPP 598
Query: 600 WAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLM 659
WAY++PTWILKIPITF+EV IW MTYYV+GF+ NI RF KQY + + NQ +SGLFR+
Sbjct: 599 WAYAIPTWILKIPITFVEVAIWTIMTYYVIGFDPNIGRFFKQYLIFVLANQMSSGLFRMT 658
Query: 660 GALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFL 719
GALGRNIIVANTFGSFA L VLVLGGFILSRD+VK WW+WGYW SP+MY QNA +VNEFL
Sbjct: 659 GALGRNIIVANTFGSFAFLAVLVLGGFILSRDNVKPWWIWGYWVSPLMYVQNAASVNEFL 718
Query: 720 GKSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPF 779
G SW H+PPNSTE LGVV+LKSRG+FP A+WYWIG+GAL+GY LLFNFLFT+ALKYL+PF
Sbjct: 719 GHSWRHIPPNSTESLGVVVLKSRGIFPEAHWYWIGIGALIGYTLLFNFLFTLALKYLNPF 778
Query: 780 GKPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSI 839
GKPQA+LS+EALA++NA +T + S + + SF +A QN KRGM+LPF+P SI
Sbjct: 779 GKPQAMLSKEALAERNANRTGD-----SSARPPSLRMHSFGDASQN-KRGMVLPFQPLSI 832
Query: 840 TFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 899
TFD+IRY++DMPQEMKAQGI +DRLE LKGVSGAFRPGVLTALMGVSGAGKTTLMDVL+G
Sbjct: 833 TFDEIRYSVDMPQEMKAQGILEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLSG 892
Query: 900 RKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDS 959
RKTGGY+ G I+ISGYPKNQ+TFARISGYCEQ DIHSPHVTVYESLVYSAWLRL P+VDS
Sbjct: 893 RKTGGYIEGRISISGYPKNQQTFARISGYCEQMDIHSPHVTVYESLVYSAWLRLSPDVDS 952
Query: 960 DTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019
+TRKMF+EEV+ELVELNP+REALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 953 ETRKMFIEEVVELVELNPLREALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1012
Query: 1020 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRH 1079
GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL L+KRGGEEIYVGP+GRH
Sbjct: 1013 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLKRGGEEIYVGPVGRH 1072
Query: 1080 CSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMI 1139
LIKY E I+GVPKIK+G+NPATWMLEVT+ AQEA LG++F +YKNSEL++ NK +I
Sbjct: 1073 ACHLIKYLEEIEGVPKIKDGHNPATWMLEVTSAAQEALLGVDFTDIYKNSELFRRNKALI 1132
Query: 1140 KELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFG 1199
KELS PPPGS +LYF T+YS SFFTQCMACLWKQH SYWRNPPYTAVRL FTTFIALMFG
Sbjct: 1133 KELSSPPPGSNDLYFPTQYSHSFFTQCMACLWKQHWSYWRNPPYTAVRLLFTTFIALMFG 1192
Query: 1200 TIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSA 1259
TIFWD+GSKR NRQD+FN+MGSMYAA+LF+GVQNATSVQPVVA+ERTVFYRERAAGMYSA
Sbjct: 1193 TIFWDMGSKRRNRQDIFNSMGSMYAAVLFIGVQNATSVQPVVAIERTVFYRERAAGMYSA 1252
Query: 1260 LPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMT 1319
LPYAF QV+IE+P++ +Q +IYGVIVY MIGFDWTVSKF WY+ FMY T LY T YGMMT
Sbjct: 1253 LPYAFAQVMIEIPYVLVQTLIYGVIVYTMIGFDWTVSKFFWYIFFMYFTLLYMTFYGMMT 1312
Query: 1320 VAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFG 1379
VAVTPNHN+AAI++SAFY +WNLFSGFI+PR R+PIWWRWY W CP+SWTLYGL+ASQ+G
Sbjct: 1313 VAVTPNHNVAAIVSSAFYAIWNLFSGFIVPRTRIPIWWRWYFWACPISWTLYGLIASQYG 1372
Query: 1380 DVNDTFDSGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436
D+ D + + V DFV++YFG+ HD +G A+V VG+ VLF FTFA+SI+AFNFQ R
Sbjct: 1373 DIKDKLEGDETVEDFVRNYFGFRHDFVGTCAIVIVGICVLFAFTFAFSIRAFNFQRR 1429
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1436 | ||||||
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.986 | 0.995 | 0.663 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.988 | 0.975 | 0.572 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.987 | 0.975 | 0.584 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.982 | 0.993 | 0.560 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.997 | 0.974 | 0.541 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.973 | 0.969 | 0.550 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.986 | 0.976 | 0.494 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.970 | 0.986 | 0.494 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.603 | 0.612 | 0.490 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.529 | 0.533 | 0.482 | 0.0 |
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5096 (1798.9 bits), Expect = 0., P = 0.
Identities = 953/1437 (66%), Positives = 1142/1437 (79%)
Query: 4 GQASFRISSARLGSSSIWRNNT-LDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQRGM 62
G + + S++ +SS+W+ ++ ++F+RSSRE+ DD+EAL WAA+EKLPT+ R+++G+
Sbjct: 3 GTSFHQASNSMRRNSSVWKKDSGREIFSRSSREE--DDEEALRWAALEKLPTFDRLRKGI 60
Query: 63 LTEDE--GQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIE 120
LT G E+DI+ LGF + + L+ERL+K+ ++++EK L KLK RI+RVG+D+PTIE
Sbjct: 61 LTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIE 120
Query: 121 VRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQ 180
VRF+HL VEAE ++G RALPT N +N + FLN LH++P+RKK TIL+DVSGI+KP
Sbjct: 121 VRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPG 180
Query: 181 RLTLLLGPPSSXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI 240
R+ LLLGPPSS +GRVTYNGHGM EFVPQRT+AYI QND+HI
Sbjct: 181 RMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHI 240
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
GEMTVRET A++AR QGVG RY++L EL+RREK ANIKPDPDID+ MKA S G++ NV+
Sbjct: 241 GEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVM 300
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
TDY+LKILGLEVCADTMVGD+MLRGISGGQ+KR+TTGEMLVGP+RALFMDEISTGLDSST
Sbjct: 301 TDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSST 360
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFER 420
TYQIVNSLR +HI NGTA+ISLLQPAPET+ LFDD+IL+++G+I+Y+GPR++V+EFFE
Sbjct: 361 TYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFET 420
Query: 421 MGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDEL 480
MGFKCP RKGVADFLQEVTS+KDQ QYWA +DEPY F+ +EF+E FQSFH+G+++GDEL
Sbjct: 421 MGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDEL 480
Query: 481 ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAM 540
A PFDK+KSHPAALTTKKYG KEL+K F+REYLLMKRNSFVY+FK Q+ A + M
Sbjct: 481 ALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTM 540
Query: 541 TLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAW 600
TLF RTEM + T DG +Y GALFF ++ +MFNG SELSMTI KLPVFYKQRD LF+PAW
Sbjct: 541 TLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAW 600
Query: 601 AYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMG 660
YSLP W+LKIPI+F+E + F+TYYV+GF+ N+ R KQY LL+ +NQ AS LF+++
Sbjct: 601 VYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVA 660
Query: 661 ALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLG 720
ALGRN+IVANTFG+FA L LGG +LSRDD+KKWW+WGYW SP+MYGQNA+ NEF G
Sbjct: 661 ALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFG 720
Query: 721 KSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFG 780
SW NS+E LGV LKSRG P+AYWYWIG GALLG+V+LFNF FT+AL +L+ G
Sbjct: 721 HSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLG 780
Query: 781 KPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSIT 840
KPQA+++EE + + EL S S G V EA N+KRGM+LPFEPHSIT
Sbjct: 781 KPQAVIAEEPAS--------DETELQSA--RSEGVV----EAGANKKRGMVLPFEPHSIT 826
Query: 841 FDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900
FD++ Y++DMPQEM QG +DRL LKGV+GAFRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 827 FDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGR 886
Query: 901 KTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSD 960
KTGGY+ G+ITISGYPKNQ+TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP EVD +
Sbjct: 887 KTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKN 946
Query: 961 TRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020
RK+F P+R+ALVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 947 KRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1006
Query: 1021 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHC 1080
LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF+AFDEL L+KRGGEEIYVGPLG
Sbjct: 1007 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHES 1066
Query: 1081 SQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIK 1140
+ LI YFE I G+ KI EGYNPATWMLEV+T +QEAALG++FA+VYKNSELYK NKE+IK
Sbjct: 1067 THLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIK 1126
Query: 1141 ELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGT 1200
ELS P PGSK+LYF T+YSQSF TQCMA LWKQH SYWRNPPYTAVR FT IALMFGT
Sbjct: 1127 ELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGT 1186
Query: 1201 IFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSAL 1260
+FWD+G K RQDL NAMGSMY A+LFLG+QNA SVQPVV VERTVFYRE+AAGMYSA+
Sbjct: 1187 MFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAM 1246
Query: 1261 PYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKXXXXXXXXXXXXXXXXXXGMMTV 1320
PYAF QV IE+P++ +QA++YG+IVYAMIGF+WT K GMM V
Sbjct: 1247 PYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAV 1306
Query: 1321 AVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGD 1380
A+TPNH+IA++++SAFY +WNLFSGF+IPRP MP+WW WY W+CPV+WTLYGL+ASQFGD
Sbjct: 1307 AMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGD 1366
Query: 1381 VNDTF-DSGQKVGDFVKDYFGYDHDMXXXXXXXXXXXXXXXXXXXAYSIKAFNFQHR 1436
+ + DS V F+++++GY A IK+FNFQ R
Sbjct: 1367 ITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4408 (1556.8 bits), Expect = 0., P = 0.
Identities = 833/1454 (57%), Positives = 1063/1454 (73%)
Query: 3 AGQASFRISSAR--LGSSSIWRN----NTLDVFARSSREDTYDDDEALTWAAIEKLPTYL 56
+G+ S +S R +G+S +R+ T +VF RS R + +DD L WAAIE+LPT+
Sbjct: 16 SGRVSLASTSHRSLVGASKSFRDVFMPQTDEVFGRSERRE--EDDMELRWAAIERLPTFD 73
Query: 57 RVQRGML--TEDEG--QAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERV 112
R+++GML T G + ++D+ L ++++L+E +L EEDNEKFL L++R +RV
Sbjct: 74 RLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNEKFLRDLRERTDRV 133
Query: 113 GLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHD 172
G+++P IEVR+E+++VE + SRALPT+FN N LE L + H+LPS++K + IL D
Sbjct: 134 GIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHLLPSKRKKIQILKD 193
Query: 173 VSGIIKPQRLTLLLGPPSSXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMEEFVPQRTSAY 232
+SGI+KP R+TLLLGPPSS SGR+TY GH EFVPQ+T AY
Sbjct: 194 ISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAY 253
Query: 233 ISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASL 292
ISQ+DLH GEMTVRE L FS RC GVG RY+++ ELSRREK IKPDP ID MK+ ++
Sbjct: 254 ISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAI 313
Query: 293 EGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEI 352
GQE ++VTDYVLKILGL++CAD + GD M RGISGGQ+KRLTTGEMLVGPARALFMDEI
Sbjct: 314 SGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEI 373
Query: 353 STGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRE 412
STGLDSSTT+QI +RQ +HI + T +ISLLQPAPET+ELFDD+ILLS+GQIVYQGPR+
Sbjct: 374 STGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRD 433
Query: 413 NVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHI 472
NVLEFFE GF+CPERKGVADFLQEVTS+KDQEQYW +++PY++V+ +FS F +FH
Sbjct: 434 NVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHT 493
Query: 473 GQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQI 532
GQKL E P+DK+K+H AAL T+KYG S EL KACF RE+LLMKRNSFVY FK QI
Sbjct: 494 GQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQI 553
Query: 533 FFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQR 592
+ + MT++LRTEMH TV DG + GA+FF++I +MFNG +EL+ T+M+LPVFYKQR
Sbjct: 554 TIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQR 613
Query: 593 DFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTA 652
DFLF+P WA++LP W+LKIP++ IE GIW+ +TYY +GF + RF +Q CVNQ A
Sbjct: 614 DFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMA 673
Query: 653 SGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNA 712
LFR +GA+GR +++N+ G+F L V LGGFI+++DD++ W W Y+ SPMMYGQ A
Sbjct: 674 LSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTA 733
Query: 713 LAVNEFLGKSWGHVPPN-----STEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNF 767
+ +NEFL + W PN + + +G V+LKSRG F YW+WI + ALLG+ LLFN
Sbjct: 734 IVMNEFLDERWSS--PNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNL 791
Query: 768 LFTVALKYLDPFGKPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRK 827
+ +AL YL+P G +A + EE K+ K E + G + S E+ S +++ K
Sbjct: 792 FYILALMYLNPLGNSKATVVEEGKDKQ---KGE-----NRGTEGSVVELNS--SSNKGPK 841
Query: 828 RGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSG 887
RGM+LPF+P S+ F+++ Y +DMP EMKAQG+ DRL+ L+ V GAFRPG+LTAL+GVSG
Sbjct: 842 RGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILTALVGVSG 901
Query: 888 AGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVY 947
AGKTTLMDVLAGRKTGGY+ GSI+ISGYPKNQ TFAR+SGYCEQ DIHSPHVTVYESL+Y
Sbjct: 902 AGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIY 961
Query: 948 SAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVA 1007
SAWLRL ++D TR++F P+R ++VGLPGV GLSTEQRKRLTIAVELVA
Sbjct: 962 SAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVA 1021
Query: 1008 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF++FDELLLMKRG
Sbjct: 1022 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRG 1081
Query: 1068 GEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYK 1127
G+ IY G LG H +L++YFE ++GVPKI +GYNPATWML+VTTP+ E+ + ++FA+++
Sbjct: 1082 GQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIFS 1141
Query: 1128 NSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVR 1187
NS LY+ N+E+IK+LS PPPGSK++YF+T+Y+QSF TQ AC WKQ+ SYWR+P Y A+R
Sbjct: 1142 NSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAIR 1201
Query: 1188 LFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTV 1247
T I ++FG IFW IG+K N QDL N G+MYAA+LFLG NA +VQP +A+ERTV
Sbjct: 1202 FLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTV 1261
Query: 1248 FYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKXXXXXXXXXX 1307
FYRE+AAGMYSA+PYA QV +E+ + IQ +Y +I+Y+MIG +WT++K
Sbjct: 1262 FYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLT 1321
Query: 1308 XXXXXXXXGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVS 1367
GMM +A+TPN+ IA I S F LWNLFSGF+IPRP++PIWWRWY W PV+
Sbjct: 1322 SFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVA 1381
Query: 1368 WTLYGLVASQFGDVNDTFDSGQKVGDF-----VKDYFGYDHDMXXXXXXXXXXXXXXXXX 1422
WTLYGL+ SQ GD D+ +GD +K+ FG++HD
Sbjct: 1382 WTLYGLITSQVGD-KDSMVHISGIGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLF 1440
Query: 1423 XXAYSIKAFNFQHR 1436
AY IK NFQ R
Sbjct: 1441 VFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4408 (1556.8 bits), Expect = 0., P = 0.
Identities = 848/1450 (58%), Positives = 1054/1450 (72%)
Query: 4 GQASFRISSARLGSSS---IWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQR 60
G S R S A S S ++ T DVF RS R + +DD L WAA+E+LPTY R+++
Sbjct: 19 GSTSHR-SLAGAASKSFRDVFAPPTDDVFGRSDRRE--EDDVELRWAALERLPTYDRLRK 75
Query: 61 GMLTED--EGQA--REVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDI 116
GML + G+ +VD+ NL E+++L+E +LK EEDNEKFL +L++R +RVG+++
Sbjct: 76 GMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEV 135
Query: 117 PTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGI 176
P IEVR+E+L+VE + SRALPT+FN N +E L H+LPS+K+ + IL D+SGI
Sbjct: 136 PKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGI 195
Query: 177 IKPQRLTLLLGPPSSXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMEEFVPQRTSAYISQN 236
IKP R+TLLLGPPSS SGR+TY GH EFVPQ+T AYISQ+
Sbjct: 196 IKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQH 255
Query: 237 DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQE 296
DLH GEMTVRE+L FS RC GVG RY++L ELSRRE+ A IKPDP+ID MK+ ++ GQE
Sbjct: 256 DLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQE 315
Query: 297 KNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGL 356
++VTDYVLK+LGL++CADT+VGD M RGISGGQRKRLTTGEMLVGPA ALFMDEISTGL
Sbjct: 316 TSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGL 375
Query: 357 DSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416
DSSTT+QI +RQ +HI + T VISLLQPAPET+ELFDD+ILLS+GQIVYQG R+NVLE
Sbjct: 376 DSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLE 435
Query: 417 FFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKL 476
FFE MGFKCPERKG+ADFLQEVTS+KDQEQYW ++ PYS+V+ +FS F SFH GQ+L
Sbjct: 436 FFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQL 495
Query: 477 GDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSA 536
E P+DK+K+HPAAL T+KYG S K+L KACF RE+LLMKRNSFVY FK QI +
Sbjct: 496 ASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMS 555
Query: 537 SVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLF 596
+AMT++ RTEMH TV+DG + GALFF++I +MFNG +EL+ T+M+LPVF+KQRDFLF
Sbjct: 556 LIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLF 615
Query: 597 FPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLF 656
+P WA++LP ++LKIP++ IE IW+ +TYY +GF + RF +Q CVNQ A LF
Sbjct: 616 YPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLF 675
Query: 657 RLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVN 716
R +GALGR ++AN+ G+ A L V VLGGFI+S+DD+ W W Y+ SPMMYGQ AL +N
Sbjct: 676 RFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVIN 735
Query: 717 EFLGKSWGHVPPNST----EPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVA 772
EFL + WG P N T + +G V+LKSRG F YW+WI +GALLG+ +LFNF + +A
Sbjct: 736 EFLDERWGS-PNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIA 794
Query: 773 LKYLDPFGKPQAI-LSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMI 831
L YL+P G +A + EE K SG S E+ S + K+GM+
Sbjct: 795 LMYLNPLGNSKATTVVEEGKDKHKGSH--------SGTGGSVVELTS--TSSHGPKKGMV 844
Query: 832 LPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKT 891
LPF+P S+ F+++ Y +DMP EMKAQG+ DRL+ L+ V GAFRPGVLTAL+GVSGAGKT
Sbjct: 845 LPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKT 904
Query: 892 TLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWL 951
TLMDVLAGRKTGGYV GSI ISGYPKNQ TFAR+SGYCEQ DIHSPHVTVYESL+YSAWL
Sbjct: 905 TLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWL 964
Query: 952 RLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSI 1011
RL ++D+ TR+MF P+R ++VGLPGV GLSTEQRKRLTIAVELVANPSI
Sbjct: 965 RLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSI 1024
Query: 1012 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF++FDELLLMKRGG+ I
Sbjct: 1025 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVI 1084
Query: 1072 YVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSEL 1131
Y G LG H +L++YFE I+GVPKIK+GYNPATWML+VTTP+ E+ + ++FA+++ NS +
Sbjct: 1085 YAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSV 1144
Query: 1132 YKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFT 1191
+ N+E+IKELS PPPGS +LYF+T+Y+Q F TQ AC WK + S WR P Y A+R T
Sbjct: 1145 NRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMT 1204
Query: 1192 TFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRE 1251
I ++FG +FW G+K QDL N G+MYAA+LFLG NA +VQP VA+ERTVFYRE
Sbjct: 1205 VVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYRE 1264
Query: 1252 RAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKXXXXXXXXXXXXXX 1311
+AAGMYSA+PYA QV +E+ + IQ +Y +I+Y+MIG+DWTV K
Sbjct: 1265 KAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVY 1324
Query: 1312 XXXXGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLY 1371
GMM VA+TPN+ IA I S F WNLFSGF+IPRP++PIWWRWY W PV+WTLY
Sbjct: 1325 FTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLY 1384
Query: 1372 GLVASQFGDVNDTFDSGQKVGDF-----VKDYFGYDHDMXXXXXXXXXXXXXXXXXXXAY 1426
G++ SQ GD D+ VGD +K+ FG+D+D AY
Sbjct: 1385 GIITSQVGD-RDSIVHITGVGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAY 1443
Query: 1427 SIKAFNFQHR 1436
IK NFQ R
Sbjct: 1444 GIKFLNFQRR 1453
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4232 (1494.8 bits), Expect = 0., P = 0.
Identities = 799/1426 (56%), Positives = 1036/1426 (72%)
Query: 20 IWRNNTLDVFARS-SREDTYDDDEALTWAAIEKLPTYLRVQRGMLTEDEGQAREVDIKNL 78
+W N+ + F+RS S +D +D+E L WAA+++LPTY R++RG+ + G+ +E+ I NL
Sbjct: 1 MW-NSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNL 59
Query: 79 GFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYIGSRA 138
E+R L++RL+ E D E+F +++ R + V L P IEVRF++L VE+ ++GSRA
Sbjct: 60 EASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRA 119
Query: 139 LPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSXXXXXXX 198
LPT+ N NM EG L +HV+ ++ LTIL +SG+I+P RLTLLLGPPSS
Sbjct: 120 LPTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLL 179
Query: 199 XXXXXXXXXXXFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGV 258
SG++TYNG+ ++E + RTSAY+SQ D H+ EMTVR+TL F+ RCQGV
Sbjct: 180 ALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGV 239
Query: 259 GPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318
G +Y++L EL+RREK A I PD D+D+ MK+ +L G E ++V +YV+KILGL+ CADT+V
Sbjct: 240 GFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLV 299
Query: 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGT 378
GDEM++GISGGQ+KRLTTGE+LVGPAR LFMDEIS GLDSSTT+QI+ +R S H L GT
Sbjct: 300 GDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGT 359
Query: 379 AVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEV 438
VISLLQP+PETYELFDD+IL+S+GQI+YQGPR+ VL+FF +GF CP+RK VADFLQEV
Sbjct: 360 TVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEV 419
Query: 439 TSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAALTTKK 498
TS+KDQ+QYW+ PY +V +F+E F+S+ G+KL +L PFDK +H AAL+T +
Sbjct: 420 TSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQ 479
Query: 499 YGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGI 558
YG K ELLK FA + LMK+N+F+Y FK Q+ A + MT+F RT MH +T++DG I
Sbjct: 480 YGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNI 539
Query: 559 YMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEV 618
Y+G+L+F+++ I+FNGF+E+ M + KLPV YK RD F+P+WAY+LP+W+L IP + IE
Sbjct: 540 YLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIES 599
Query: 619 GIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANL 678
WV +TYY +G++ RF++Q+ L ++Q + GLFR+MG+LGR++IVANTFGSFA L
Sbjct: 600 ATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAML 659
Query: 679 TVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPPNST-EPLGVV 737
V+ LGGFI+SRD + WW+WGYW SP+MY QNA +VNEFLG +W N T + LG+
Sbjct: 660 VVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLA 719
Query: 738 ILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEAL-AKKNA 796
+LK R LF YWYWIGV ALLGY +LFN LFT+ L +L+P+GK QA++S E L ++
Sbjct: 720 LLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKK 779
Query: 797 CKTEE-PVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMK 855
K +E VEL +Q S G + + RGM+LPF+P S++F +I Y +D+P +K
Sbjct: 780 RKGDEFVVELREYLQHS-GSIHG----KYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLK 834
Query: 856 AQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915
QGI +DRL+ L ++GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG + G + ISG+
Sbjct: 835 EQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGF 894
Query: 916 PKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXX 975
PK QETFARISGYCEQ D+HSP +TV ESL++SA LRLP ++DS+T++ F
Sbjct: 895 PKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVEL 954
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
+ ALVGLPGV GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN
Sbjct: 955 TSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1014
Query: 1036 TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPK 1095
V+TGRT+VCTIHQPSIDIF++FDELL MKRGGE IY GPLG+ +LIKYFE I+GV K
Sbjct: 1015 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQK 1074
Query: 1096 IKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQ 1155
IK G+NPA WML+VT +E LG++FA++Y+NS L + NKE+I+ LS P +K + F
Sbjct: 1075 IKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFP 1134
Query: 1156 TRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDL 1215
TRYSQS ++Q +ACLWKQ+LSYWRNP YTAVR F+T I+LM GTI W GSKR +Q L
Sbjct: 1135 TRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQL 1194
Query: 1216 FNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIF 1275
FNAMGSMYAA+LF+G+ NAT+ QPVV++ER V YRERAAGMYSALP+AF QV IE P++
Sbjct: 1195 FNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVL 1254
Query: 1276 IQAVIYGVIVYAMIGFDWTVSKXXXXXXXXXXXXXXXXXXGMMTVAVTPNHNIAAIIASA 1335
Q+ IY I YAM F+W+ K GMMT A+TPNHN+A+IIA+
Sbjct: 1255 AQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAP 1314
Query: 1336 FYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDT--FDSG---QK 1390
FY+LWNLFSGF+IP R+P+WWRWY W PV+WTLYGL+ SQ+GD + G
Sbjct: 1315 FYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVM 1374
Query: 1391 VGDFVKDYFGYDHDMXXXXXXXXXXXXXXXXXXXAYSIKAFNFQHR 1436
V ++D GY HD A++IKAFNFQ R
Sbjct: 1375 VKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4157 (1468.4 bits), Expect = 0., P = 0.
Identities = 793/1464 (54%), Positives = 1043/1464 (71%)
Query: 1 MDAGQASFRISSARLGSSSIWRNNTLDVFARSSR--EDTYDDDEALTWAAIEKLPTYLRV 58
+ G S R S +R S S N D+F+ SR + DD+EAL WAAIEKLPTY R+
Sbjct: 10 LGGGGVSMRRSISR--SVSRASRNIEDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRL 67
Query: 59 QRGMLT---EDE--GQ---AREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIE 110
+ ++ ED+ G ++EVD+ L +R+ I+ + K+AE+DNE+ L KL++RI+
Sbjct: 68 RTTLMNAVVEDDVYGNQLMSKEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRID 127
Query: 111 RVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTIL 170
RVG+ +PT+EVR+EHL ++A+ Y G+R+LPT+ N NM E L + + ++K LTIL
Sbjct: 128 RVGIKLPTVEVRYEHLTIKADCYTGNRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTIL 187
Query: 171 HDVSGIIKPQRLTLLLGPPSSXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMEEFVPQRTS 230
D+SG+IKP R+TLLLGPPSS SG +TYNG+ ++EFVP++TS
Sbjct: 188 KDISGVIKPGRMTLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTS 247
Query: 231 AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAA 290
AYISQNDLH+G MTV+ETL FSARCQGVG RY++L EL+RREK A I P+ D+DL MKA+
Sbjct: 248 AYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKAS 307
Query: 291 SLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMD 350
+ +G + ++VTDY LKILGL++C DT+VGD+M+RGISGGQ+KR+TTGEM+VGP + LFMD
Sbjct: 308 AAQGVKNSLVTDYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMD 367
Query: 351 EISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGP 410
EISTGLDSSTT+QIV L+Q +H+ T ++SLLQPAPET++LFDD+IL+S+GQIVYQGP
Sbjct: 368 EISTGLDSSTTFQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGP 427
Query: 411 RENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSF 470
R+N+LEFFE GFKCPERKG ADFLQEVTS+KDQEQYW N + PY ++ EF+ ++SF
Sbjct: 428 RDNILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSF 487
Query: 471 HIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMF 530
H+G K+ +ELA PFDKS+ H AAL KY SK+ELLK+C+ +E+LLM+RN+F Y FK
Sbjct: 488 HVGTKMSNELAVPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTV 547
Query: 531 QIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYK 590
QI A++ TLFLRTEM+ D +Y+GAL F +I MFNGF+E++M + +LPVFYK
Sbjct: 548 QIVIIAAITSTLFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYK 607
Query: 591 QRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQ 650
QRD LF+P+W +SLPT++L IP + +E W+ +TYY +GF + RF KQ+ L+ + Q
Sbjct: 608 QRDLLFYPSWTFSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQ 667
Query: 651 TASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQ 710
A+ LFRL+ ++ R +++ANT G+ L V +LGGF+L + + WW W YW SP+ Y
Sbjct: 668 MAASLFRLIASVCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAF 727
Query: 711 NALAVNEFLGKSWGH--VPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFL 768
N L VNE W + NST LG ++L + ++ WYWI VGALL + LFN L
Sbjct: 728 NGLVVNEMFAPRWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNIL 787
Query: 769 FTVALKYLDPFGKPQAILSEEALAKKNACKTEEPVE--LSSGVQSSYGEVR-------SF 819
FT+AL YL+P GK +L EE ++A + ++P+ LS+ + GEV S
Sbjct: 788 FTLALTYLNPLGKKAGLLPEEE--NEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSA 845
Query: 820 NEAD--QNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPG 877
EA K+GM+LPF P +++FDD++Y +DMP EM+ QG+ + RL+ LKGV+GAFRPG
Sbjct: 846 AEASGGAGNKKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPG 905
Query: 878 VLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSP 937
VLTALMGVSGAGKTTLMDVLAGRKTGGY+ G + ISG+PK QETFARISGYCEQTDIHSP
Sbjct: 906 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSP 965
Query: 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREALVGLPGVSGLSTEQRK 997
VTV ESL++SA+LRLP EV D + MF + +R+++VGLPGV+GLSTEQRK
Sbjct: 966 QVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRK 1025
Query: 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDA 1057
RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIF+A
Sbjct: 1026 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEA 1085
Query: 1058 FDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAA 1117
FDEL+LMKRGG+ IY GPLG++ ++++YFE GV KI E YNPATWMLE ++ A E
Sbjct: 1086 FDELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELK 1145
Query: 1118 LGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSY 1177
L ++FA++Y S L++ NK ++KELS+PP G+ +LYF T++SQ+ + Q +CLWKQ +Y
Sbjct: 1146 LSVDFAELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTY 1205
Query: 1178 WRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSV 1237
WR+P Y VR FT +L+ GT+FW IG R+N DL +G++YAAI+F+G+ N ++V
Sbjct: 1206 WRSPDYNLVRFIFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTV 1265
Query: 1238 QPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSK 1297
QP+VAVERTVFYRERAAGMYSA+PYA QV ELP++ IQ V Y +IVYAM+GF+W K
Sbjct: 1266 QPMVAVERTVFYRERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEK 1325
Query: 1298 XXXXXXXXXXXXXXXXXXGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWW 1357
GMMTV++TPN +A+I ASAFY ++NLFSGF IPRP++P WW
Sbjct: 1326 FFWFVFVSYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWW 1385
Query: 1358 RWYCWICPVSWTLYGLVASQFGDVNDTFD--SGQK---VGDFVKDYFGYDHDMXXXXXXX 1412
WY WICPV+WT+YGL+ SQ+GDV G V +++D++G+ D
Sbjct: 1386 IWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAV 1445
Query: 1413 XXXXXXXXXXXXAYSIKAFNFQHR 1436
A+ I+ NFQ R
Sbjct: 1446 LIAFTVFFAFIFAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4147 (1464.9 bits), Expect = 0., P = 0.
Identities = 786/1429 (55%), Positives = 1020/1429 (71%)
Query: 24 NTLDVFARSSR--EDTYDDDEALTWAAIEKLPTYLRVQRGM---LTEDE--GQA---REV 73
N D+F SSR + +D+EAL WA+IEKLPTY R++ + L ED+ G + V
Sbjct: 29 NMEDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAV 88
Query: 74 DIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAY 133
D+ L ER+ I+ + K+AE+DNE+ L KL++RI+RVG+ +PT+EVR++HL V+A+ Y
Sbjct: 89 DVTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCY 148
Query: 134 IGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSXX 193
G R+LP++ N+ NM E L + + ++K LTIL DVSGI+KP R+TLLLGPPSS
Sbjct: 149 TGDRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGK 208
Query: 194 XXXXXXXXXXXXXXXXFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSA 253
SG VTYNG+ + EFVP +TSAYISQNDLH+G MTV+ETL FSA
Sbjct: 209 TTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSA 268
Query: 254 RCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVC 313
RCQGVG RY++L EL+RREK A I P+ D+DL MKA++ +G + +++TDY LKILGL++C
Sbjct: 269 RCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDIC 328
Query: 314 ADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIH 373
DT+VGD+M+RGISGGQ+KR+TTGEM+VGP + LFMDEISTGLDSSTT+QIV L+Q +H
Sbjct: 329 KDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVH 388
Query: 374 ILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVAD 433
+ T +ISLLQPAPET++LFDD+ILLS+GQIVYQGPR+++LEFFE GFKCPERKG AD
Sbjct: 389 LTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTAD 448
Query: 434 FLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAA 493
FLQEVTS+KDQEQYW + + PY ++ EF+ F+ FH+G KL +EL+ P+DKSKSH AA
Sbjct: 449 FLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAA 508
Query: 494 LTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTV 553
L KY K ELLK+C+ +E++LMKRNSF Y FK QI A++ TL+LRTEMH
Sbjct: 509 LMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNE 568
Query: 554 EDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPI 613
D IY+G+L FA+I MFNG +E++MTI +LPVFYKQRD LF P W Y+LPT++L IPI
Sbjct: 569 IDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPI 628
Query: 614 TFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFG 673
+ E W+ +TYY +G+ + ERF KQ+ ++ + Q A+G+FR + + R + +ANT G
Sbjct: 629 SIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGG 688
Query: 674 SFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSW-GHVPPNSTE 732
L V + GGF+L R ++ WW W YW SP+ Y NA+ VNE W + NST
Sbjct: 689 VLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTT 748
Query: 733 PLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALA 792
LG +L +F + WYWIGVG LLG+ ++FN FT+AL YLDP GK QAIL +E
Sbjct: 749 RLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEE-- 806
Query: 793 KKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQ 852
+E + +G + E+ S + K+GM+LPF P +++FDD++Y +DMP
Sbjct: 807 -------DEEAKGKAG-SNKETEMESVSA-----KKGMVLPFTPLAMSFDDVKYFVDMPA 853
Query: 853 EMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI 912
EM+ QG+ + RL+ LKGV+ AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY+ G + +
Sbjct: 854 EMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRV 913
Query: 913 SGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXX 972
SG+PK QETFARISGYCEQTDIHSP VTV ESL++SA+LRL EV + + MF
Sbjct: 914 SGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMEL 973
Query: 973 XXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1032
+R+A+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 974 VELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 1033
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDG 1092
VRNTVDTGRTVVCTIHQPSIDIF+AFDELLLMKRGG IY GPLGR+ ++++YFE G
Sbjct: 1034 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPG 1093
Query: 1093 VPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNL 1152
VPKI E YNPATWMLE ++ A E LG++FA++YK S L + NK +++ELS+PP G+ +L
Sbjct: 1094 VPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDL 1153
Query: 1153 YFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANR 1212
YF T++SQ+ + Q +CLWKQ +YWR+P Y VR FT +LM G++FW IG KR+N
Sbjct: 1154 YFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNV 1213
Query: 1213 QDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELP 1272
QDL +G++YAA++F+G+ N ++VQP+VAVERTVFYRE+AAGMYSA+PYA QV ELP
Sbjct: 1214 QDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELP 1273
Query: 1273 HIFIQAVIYGVIVYAMIGFDWTVSKXXXXXXXXXXXXXXXXXXGMMTVAVTPNHNIAAII 1332
++ IQ Y +I+Y+M+GF+W SK GMMTV++TPN +A+I
Sbjct: 1274 YVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIF 1333
Query: 1333 ASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDTFD-----S 1387
ASAFY ++NLFSGF IPRP++P WW WY WICPV+WT+YGL+ SQ+GDV
Sbjct: 1334 ASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAP 1393
Query: 1388 GQKVGDFVKDYFGYDHDMXXXXXXXXXXXXXXXXXXXAYSIKAFNFQHR 1436
G V ++KD +G++ D A+ IK NFQ R
Sbjct: 1394 GLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3677 (1299.4 bits), Expect = 0., P = 0.
Identities = 709/1435 (49%), Positives = 968/1435 (67%)
Query: 11 SSARLGSSSIWRNNTLDVFARSSREDTYDDDEALTWAAIEKLPTYLRVQRGMLTE-DEGQ 69
SS R +SS ++++ + +D + AL WA IE+LPT R++ +L + DE
Sbjct: 26 SSFRRHTSSFRSSSSIYEVENDGDVNDHDAEYALQWAEIERLPTVKRMRSTLLDDGDESM 85
Query: 70 A----REVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEH 125
R VD+ LG +ER +IE+L+K E DN K L K++ RI+RVG+++PTIEVR+E
Sbjct: 86 TEKGRRVVDVTKLGAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYES 145
Query: 126 LNVEAEA-YIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTL 184
L V AE + +ALPT++N+ +L + L + + + I++DV+GIIKP RLTL
Sbjct: 146 LKVVAECEVVEGKALPTLWNTAKRVLSELVK-LTGAKTHEAKINIINDVNGIIKPGRLTL 204
Query: 185 LLGPPSSXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMT 244
LLGPPS SG ++YNGH ++EFVPQ+TSAYISQ DLHI EMT
Sbjct: 205 LLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMT 264
Query: 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYV 304
VRET+ FSARCQGVG R +++ E+S+REK I PD ++D MKA S+EG ++++ TDY+
Sbjct: 265 VRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYI 324
Query: 305 LKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQI 364
LKILGL++CA+ ++GD M RGISGGQ+KRLTT EM+VGP +ALFMDEI+ GLDSST +QI
Sbjct: 325 LKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQI 384
Query: 365 VNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFK 424
V SL+Q HI + T ++SLLQPAPE+Y+LFDD++L++ G+IVY GPR VL FFE GF+
Sbjct: 385 VKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFR 444
Query: 425 CPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPF 484
CPERKGVADFLQEV S+KDQ QYW ++D PYSFV+ + S+ F+ IG+K+ D L+ P+
Sbjct: 445 CPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPY 504
Query: 485 DKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFL 544
D+SKSH AL+ Y EL AC +REYLLMKRN FVY FK Q+ +A + MT+F+
Sbjct: 505 DRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFI 564
Query: 545 RTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSL 604
RT M + G YM ALFFA+I ++ +GF ELSMT +L VFYKQ+ F+PAWAY++
Sbjct: 565 RTRMGIDIIH-GNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAI 623
Query: 605 PTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGR 664
P +LK+P++F E +W ++YYV+G+ RF KQ+ LL V+ T+ +FR + A+ +
Sbjct: 624 PATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQ 683
Query: 665 NIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWG 724
++ + T GSF L V GF++ + W WG+W +P+ YG+ L+VNEFL W
Sbjct: 684 TVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWN 743
Query: 725 HVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQA 784
+ PN+ LG IL++RG+ N Y YW+ + ALLG+ +LFN +FT+AL +L +A
Sbjct: 744 QMQPNNFT-LGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRA 802
Query: 785 ILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDI 844
++S++ L++ TE+ E SS + + E D+ M+LPF+P ++TF D+
Sbjct: 803 MISQDKLSELQG--TEKSTEDSSVRKKTTDSPVKTEEEDK-----MVLPFKPLTVTFQDL 855
Query: 845 RYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 904
Y +DMP EM+ QG +L+ L ++GAFRPG+LTALMGVSGAGKTTL+DVLAGRKT G
Sbjct: 856 NYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSG 915
Query: 905 YVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKM 964
Y+ G I ISG+PK QETFAR+SGYCEQTDIHSP++TV ES++YSAWLRL PE+D+ T+
Sbjct: 916 YIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTK 975
Query: 965 FXXXXXXXXXXNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
F + I+++LVG+ GVSGLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDAR
Sbjct: 976 FVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1035
Query: 1025 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLI 1084
AAAIVMR V+N DTGRT+VCTIHQPSIDIF+AFDEL+L+KRGG IY GPLG+H +I
Sbjct: 1036 AAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHII 1095
Query: 1085 KYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELSI 1144
+YFE + +PKIK+ +NPATWML+V++ + E LG++FAK+Y +S LYK N E++K+LS
Sbjct: 1096 EYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQ 1155
Query: 1145 PPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWD 1204
P GS ++ F+ ++QS++ Q + LWK +LSYWR+P Y +R+ T +L+FG +FW
Sbjct: 1156 PDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWK 1215
Query: 1205 IGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAF 1264
G +Q +F G++Y +LFLG+ N S ER V YRER AGMYSA YA
Sbjct: 1216 QGQNLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYAL 1275
Query: 1265 GQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKXXXXXXXXXXXXXXXXXXGMMTVAVTP 1324
GQVV E+P+IFIQA + ++ Y MIGF + K M V++TP
Sbjct: 1276 GQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITP 1335
Query: 1325 NHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVND- 1383
N +AAI+ S FYV +NLFSGF+IP+ ++P WW W ++ P SWTL G ++SQ+GD+++
Sbjct: 1336 NFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEE 1395
Query: 1384 --TFDSGQKVGDFVKDYFGYDHDMXXXXXXXXXXXXXXXXXXXAYSIKAFNFQHR 1436
F V F+KDYFG+ HD+ A+ + NFQ R
Sbjct: 1396 INVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3622 (1280.1 bits), Expect = 0., P = 0.
Identities = 700/1417 (49%), Positives = 962/1417 (67%)
Query: 30 ARSSREDTYDDDE-ALTWAAIEKLPTYLRVQRGMLTEDEGQARE-----VDIKNLGFIER 83
+R+ ED D+ E AL WA I++LPT+ R+ R L + G+ E VD+ LG +ER
Sbjct: 10 SRNEHEDGGDEAEHALQWAEIQRLPTFKRL-RSSLVDKYGEGTEKGKKVVDVTKLGAMER 68
Query: 84 RNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEA-YIGSRALPTV 142
+IE+L+K E DN K L K++ R+ERVG++ P+IEVR+EHL VEA + +ALPT+
Sbjct: 69 HLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTL 128
Query: 143 FNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSXXXXXXXXXXX 202
+NS ++ L L + + + + IL DVSGII P RLTLLLGPP
Sbjct: 129 WNSLKHVFLDLLK-LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSG 187
Query: 203 XXXXXXXFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRY 262
G ++YNGHG+ E VPQ+TSAYISQ+DLHI EMT RET+ FSARCQGVG R
Sbjct: 188 NLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRT 247
Query: 263 EVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322
+++ E+S+REK I PDP+ID MKA S++G ++++ TDY+LKILGL++CA+T+VG+ M
Sbjct: 248 DIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAM 307
Query: 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVIS 382
RGISGGQ+KRLTT EM+VGP +ALFMDEI+ GLDSST +QI+ SL+Q HI N T +S
Sbjct: 308 KRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVS 367
Query: 383 LLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRK 442
LLQPAPE+Y+LFDD++L+++G+IVY GPR++VL+FFE GF+CPERKGVADFLQEV S+K
Sbjct: 368 LLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKK 427
Query: 443 DQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAALTTKKYGAS 502
DQ QYW +++ P+SFV+ S+ F+ IG+K+ + L+ P+D SK+H AL+ Y
Sbjct: 428 DQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLP 487
Query: 503 KKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGA 562
K EL +AC +RE+LLMKRN FVY FK FQ+ +A + MT+F+RT M + G YM
Sbjct: 488 KWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIH-GNSYMSC 546
Query: 563 LFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWV 622
LFFA + ++ +G ELSMT+ +L VFYKQ+ F+PAWAY++P +LKIP++F E +W
Sbjct: 547 LFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWT 606
Query: 623 FMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLV 682
+TYYV+G+ RF +Q+ +L V+ T+ +FR + A+ + + A T GSF L V
Sbjct: 607 CLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFV 666
Query: 683 LGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPPNSTEPLGVVILKSR 742
GF + D+ W WG+W +P+ Y + L+VNEFL W + P + LG IL+SR
Sbjct: 667 FAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNVT-LGRTILESR 725
Query: 743 GLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEEP 802
GL + Y YW+ + ALLG ++FN +FT+AL +L + ++S++ L++ K +
Sbjct: 726 GLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTK-DSS 784
Query: 803 VELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDD 862
V+ + + SS +++ NE D + MILPF+P +ITF D+ Y +D+P EMK QG +
Sbjct: 785 VKKNKPLDSS---IKT-NE-DPGK---MILPFKPLTITFQDLNYYVDVPVEMKGQGYNEK 836
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETF 922
+L+ L ++GAFRPGVLTALMG+SGAGKTTL+DVLAGRKT GY+ G I ISG+ K QETF
Sbjct: 837 KLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETF 896
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFXXXXXXXXXXNPIREAL 982
AR+SGYCEQTDIHSP +TV ESL+YSAWLRL PE++ T+ F I++AL
Sbjct: 897 ARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDAL 956
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042
VG+ GVSGLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V+N +TGRT
Sbjct: 957 VGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRT 1016
Query: 1043 VVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNP 1102
+VCTIHQPSI IF+AFDEL+L+KRGG IY GPLG+H S +I+YF+ I GV KI++ YNP
Sbjct: 1017 IVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNP 1076
Query: 1103 ATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSF 1162
ATWMLEVT+ + E L ++FAK+Y S+LYK N E++KELS P GS +L+F+ ++Q++
Sbjct: 1077 ATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNW 1136
Query: 1163 FTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSM 1222
+ Q +CLWK LSYWR+P Y +R+ T + +FG +FW+ G K +Q+LF +G++
Sbjct: 1137 WEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAI 1196
Query: 1223 YAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYG 1282
Y +LF+G+ N TS ER V YRER AGMYSA YA QVV E+P+IFIQ+ +
Sbjct: 1197 YGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFV 1256
Query: 1283 VIVYAMIGFDWTVSKXXXXXXXXXXXXXXXXXXGMMTVAVTPNHNIAAIIASAFYVLWNL 1342
+++Y MIGF + SK M +++TPN +AAI+ S F+ +N+
Sbjct: 1257 IVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNI 1316
Query: 1343 FSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVN---DTFDSGQKVGDFVKDYF 1399
F+GF+IP+P++P WW W+ +I P SWTL +SQ+GD++ + F + V F++DYF
Sbjct: 1317 FAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDYF 1376
Query: 1400 GYDHDMXXXXXXXXXXXXXXXXXXXAYSIKAFNFQHR 1436
G+ HD A+ + NFQ R
Sbjct: 1377 GFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2200 (779.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 436/888 (49%), Positives = 599/888 (67%)
Query: 9 RISSARLGSSSIWRNNTLDVFARSSREDTYD-DDEALTWAAIEKLPTYLRVQRGMLTEDE 67
R S LG + +N+ + F+R S D D+EAL WAA+EKLPT+ R++ ++ E
Sbjct: 6 RSLSKSLGE--LLASNSNNHFSRRSGSTIDDHDEEALKWAALEKLPTFARLRTTIIHPHE 63
Query: 68 GQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLN 127
VD+ LG +R+ I+ + K+ EEDNEKFL K ++RI+RV + +PT+EVRFE +
Sbjct: 64 DL---VDVTKLGVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVT 120
Query: 128 VEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLG 187
+EA +IG RALPT+ N+ N+ E L L ++ +TIL DVSGIIKP R+TLLLG
Sbjct: 121 IEANCHIGKRALPTLPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLG 180
Query: 188 PPSSXXXXXXXXXXXXXXXXXXFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247
PPSS +GRVTYNGHG+EEFVPQ+TSAYISQND+H+G MTV+E
Sbjct: 181 PPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQE 240
Query: 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKI 307
TL FSARCQGVG RY++L EL RREK A I P+P++DL MK+ + + +++TDY L+I
Sbjct: 241 TLDFSARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRI 300
Query: 308 LGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNS 367
LGL++C DT+VGDEM+RGISGGQ+KR+TTGEM+VGP + LFMDEISTGLDSSTTYQIV
Sbjct: 301 LGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKC 360
Query: 368 LRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPE 427
L++ + + T ++SLLQPAPET+ELFDD+ILLS+GQIVYQGPR++VL FFE GFKCP+
Sbjct: 361 LQEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPD 420
Query: 428 RKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKS 487
RKG ADFLQEVTSRKDQEQYWA+ +PYS+++ EFS+ F++FH+G L +L+ P+D+
Sbjct: 421 RKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRF 480
Query: 488 KSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTE 547
KSHPA+L KK+ K +L K C+ RE LLMKRN+F Y K QI A +A T++LRTE
Sbjct: 481 KSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTE 540
Query: 548 MHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTW 607
M DG +Y+GAL F++I MFNGF+EL++ I +LPVFYKQRD LF P W +SLPT+
Sbjct: 541 MGTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTF 600
Query: 608 ILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNII 667
+L IPI+ E +WV +TYY++GF + RF+K ++ Q A G+FR + A R++I
Sbjct: 601 LLGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMI 660
Query: 668 VANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVP 727
+ANT G+ L + +LGGFI+ R ++ KWW W YW SPM Y +AL VNE L W + P
Sbjct: 661 LANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQP 720
Query: 728 P--NSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAI 785
NST LG+ +L+ +F + WYWIGVG +LG+ +LFN L T+AL +L+P K QA+
Sbjct: 721 SSDNSTS-LGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAV 779
Query: 786 LSEEALAK---KNACKTEEPVELSSGVQSSYGEVR-SFNEADQNRKRGMILPFEPHSITF 841
+S+E + +N K++ +++ G+ + + SF+ N M + ++
Sbjct: 780 VSKENTEENRAENGSKSKS-IDVKRGMVLPFTPLTMSFDNV--NYYVDMPKEMKEQGVSK 836
Query: 842 DDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAG 889
D ++ ++ + G+ L L GVSGA + ++ L G G
Sbjct: 837 DKLQLLKEVTGVFRP-GV----LTALMGVSGAGKTTLMDVLAGRKTGG 879
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1968 (697.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 374/775 (48%), Positives = 527/775 (68%)
Query: 29 FARSSREDTYD-DDEALTWAAIEKLP-----TYLRVQRGMLTEDE--GQA-----REVDI 75
FAR S +T + D+E L WAAI +LP T+ + R T+ + G A + +D+
Sbjct: 22 FARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDV 81
Query: 76 KNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYIG 135
K L +R L+ + L +++DN K L +K+R++RVG+++P IEVRFE+LN+EA+ G
Sbjct: 82 KKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAG 141
Query: 136 SRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSXXXX 195
+RALPT+ N + E L+ L ++ RK L IL D+SGIIKP R+TLLLGPP S
Sbjct: 142 TRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKST 201
Query: 196 XXXXXXXXXXXXXXFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARC 255
+G +TYNG + +F +RTSAYISQ D HI E+TVRETL F+ARC
Sbjct: 202 LLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARC 261
Query: 256 QGVGPRYE-VLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCA 314
QG + +++L+R EK I+P +ID MKAAS++G++ +V TDYVLK+LGL+VC+
Sbjct: 262 QGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCS 321
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI 374
DTMVG++M+RG+SGGQRKR+TTGEM VGP + LFMDEISTGLDSSTT+QIV +R +H+
Sbjct: 322 DTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHL 381
Query: 375 LNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADF 434
++ T +++LLQPAPET++LFDDLILLS+G +VYQGPRE+V+ FFE +GF+ P RKGVADF
Sbjct: 382 MDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADF 441
Query: 435 LQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAAL 494
LQEVTS+KDQ QYWA+ +PY F+ + + F++ G +LA PFDK + P+AL
Sbjct: 442 LQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSAL 501
Query: 495 TTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVE 554
K+ S E LK CF RE LL+KR+ F+Y F+ Q+ F V T+FL+T +H ++ +
Sbjct: 502 CRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQ 561
Query: 555 DGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPIT 614
G Y+ LFF ++ +MFNGFSEL + I +LPVFYKQRD F PAW++S+ +W+L++P +
Sbjct: 562 FGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYS 621
Query: 615 FIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGS 674
+E +W + Y+ VG + RF + LL V+Q A GLFR+M +L R++++ANTFGS
Sbjct: 622 VLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGS 681
Query: 675 FANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPPNSTEPL 734
A L V +LGGF++ + D+K WW+WG+W SP+ YGQ A+AVNEF W S +
Sbjct: 682 AAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTI 741
Query: 735 GVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEE 789
G+ +LK R N YWYWIG+ L+GY +LFN + T+AL YL+P K +A++ ++
Sbjct: 742 GLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDD 796
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5929 | 0.9937 | 0.9767 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.7034 | 0.9979 | 0.9835 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6931 | 0.9867 | 0.9957 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.7038 | 0.9853 | 0.9819 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7277 | 0.9846 | 0.9860 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6970 | 0.9874 | 0.9874 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.7027 | 0.9979 | 0.9835 | N/A | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.7044 | 0.9853 | 0.9799 | no | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5235 | 0.9909 | 0.9834 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1436 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-105 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-95 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-73 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-72 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-59 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-55 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-52 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-46 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-42 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-41 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-40 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-33 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-33 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-32 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-31 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-31 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 7e-31 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-27 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-25 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-23 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-23 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-22 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-20 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-19 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 9e-19 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-18 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-17 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-17 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-15 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-15 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-15 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-14 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-14 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-14 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-14 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-14 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-14 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-14 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-14 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 7e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-14 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-13 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-13 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-13 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-13 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-13 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 8e-13 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-13 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 9e-13 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 9e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 8e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 9e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-11 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-11 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-11 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-11 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-10 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-10 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-10 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-10 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-10 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 9e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 9e-10 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-09 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-09 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-09 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-09 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-09 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-09 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 8e-09 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-08 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-08 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-08 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-08 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-08 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-08 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-08 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 6e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-08 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-08 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-08 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 8e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 8e-08 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 9e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 9e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 9e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-08 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 9e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-07 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-07 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-07 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-07 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 3e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-07 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-07 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-07 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-07 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-07 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 6e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 8e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-06 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-06 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-06 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-06 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-06 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-06 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-06 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 7e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-06 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 9e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 9e-06 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-05 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-05 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-05 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-05 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-05 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 9e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-04 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-04 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-04 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-04 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 7e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 8e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.001 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.001 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.001 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 0.001 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.001 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.001 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.001 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.001 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.001 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.001 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 0.002 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 0.002 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.002 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.002 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.002 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 0.002 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 0.002 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 0.002 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.002 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.002 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.002 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.002 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.002 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.002 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 0.003 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 0.003 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 0.003 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 0.003 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.003 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 0.003 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| COG2874 | 235 | COG2874, FlaH, Predicted ATPases involved in bioge | 0.003 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.004 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.004 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2084 bits (5400), Expect = 0.0
Identities = 879/1470 (59%), Positives = 1110/1470 (75%), Gaps = 38/1470 (2%)
Query: 3 AGQASFRISSARLGSSSIWRNNTLDVFA---RSSREDTY--DDDEALTWAAIEKLPTYLR 57
+ S R S +R S S N DVF+ +S R + +D+EAL WAAIEKLPTY R
Sbjct: 3 SRGGSMRRSISRSVSRSSR--NMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSR 60
Query: 58 VQRGML---TEDEGQA-----REVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRI 109
++ ++ E++ +EVD+ L +R+ I+ + K+AEEDNEKFL K ++RI
Sbjct: 61 LRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRI 120
Query: 110 ERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTI 169
+RVG+ +PT+EVRFEHL VEA+ YIGSRALPT+ N+ N+ E L L + ++K LTI
Sbjct: 121 DRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTI 180
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRT 229
L D SGIIKP R+TLLLGPPSSGKTTLLLALAGKL LK SG +TYNG+ + EFVP++T
Sbjct: 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKT 240
Query: 230 SAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKA 289
SAYISQND+H+G MTV+ETL FSARCQGVG RY++L EL+RREK A I P+ ++DL MKA
Sbjct: 241 SAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKA 300
Query: 290 ASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFM 349
++EG + +++TDY LKILGL++C DT+VGDEM+RGISGGQ+KR+TTGEM+VGP + LFM
Sbjct: 301 TAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFM 360
Query: 350 DEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
DEISTGLDSSTTYQIV L+Q +H+ T ++SLLQPAPET++LFDD+ILLS+GQIVYQG
Sbjct: 361 DEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQG 420
Query: 410 PRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQS 469
PR+++LEFFE GFKCPERKG ADFLQEVTS+KDQEQYWA++++PY +++ EF+E F+S
Sbjct: 421 PRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKS 480
Query: 470 FHIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKM 529
FH+G +L +EL+ PFDKS+SH AAL KY K ELLKAC+ +E+LLMKRN+FVY FK
Sbjct: 481 FHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKT 540
Query: 530 FQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFY 589
QI A++A T+FLRTEMH EDG +Y+GAL F++I MFNGF+EL++ I +LPVFY
Sbjct: 541 VQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFY 600
Query: 590 KQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVN 649
KQRD LF P W ++LPT++L IPI+ IE +WV +TYY +GF RF KQ L+ +
Sbjct: 601 KQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQ 660
Query: 650 QTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYG 709
Q A+G+FRL+ ++ R +I+ANT G+ L V +LGGFIL + ++ WW W YW SP+ YG
Sbjct: 661 QMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYG 720
Query: 710 QNALAVNEFLGKSWGHVPP-NSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFL 768
NALAVNE W + +++ LG +L +F + WYWIGVGALLG+ +LFN L
Sbjct: 721 FNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVL 780
Query: 769 FTVALKYLDPFGKPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNR-- 826
FT+AL YL+P GK QAI+SEE + + P LSS ++ EV ++
Sbjct: 781 FTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLS 840
Query: 827 ---------------KRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVS 871
KRGM+LPF P +++FDD+ Y +DMP EMK QG+ +DRL+ L+ V+
Sbjct: 841 KNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVT 900
Query: 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQ 931
GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY+ G I ISG+PK QETFARISGYCEQ
Sbjct: 901 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQ 960
Query: 932 TDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991
DIHSP VTV ESL+YSA+LRLP EV + + MFV+EVMELVEL+ +++A+VGLPGV+GL
Sbjct: 961 NDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020
Query: 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1051
STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS
Sbjct: 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080
Query: 1052 IDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTT 1111
IDIF+AFDELLLMKRGG+ IY GPLGR+ ++I+YFE I GVPKIKE YNPATWMLEV++
Sbjct: 1081 IDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSS 1140
Query: 1112 PAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLW 1171
A E LGI+FA+ YK+S LY+ NK ++KELS PPPG+ +LYF T+YSQS + Q +CLW
Sbjct: 1141 LAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLW 1200
Query: 1172 KQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGV 1231
KQ +YWR+P Y VR FFT ALM GTIFW +G+KR+N DL +G+MYAA+LF+G+
Sbjct: 1201 KQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGI 1260
Query: 1232 QNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGF 1291
N ++VQP+VAVERTVFYRERAAGMYSALPYA QVV E+P++ IQ Y +IVYAM+ F
Sbjct: 1261 NNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAF 1320
Query: 1292 DWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRP 1351
+WT +KF W+ + +FLYFT YGMMTV++TPN +AAI A+AFY L+NLFSGF IPRP
Sbjct: 1321 EWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRP 1380
Query: 1352 RMPIWWRWYCWICPVSWTLYGLVASQFGDVNDT-----FDSGQKVGDFVKDYFGYDHDML 1406
++P WW WY WICPV+WT+YGL+ SQ+GDV DT + +++D++GYD D +
Sbjct: 1381 KIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFM 1440
Query: 1407 GVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436
G VA V VG V F F FA+ I+ NFQ R
Sbjct: 1441 GPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1197 bits (3099), Expect = 0.0
Identities = 410/1443 (28%), Positives = 658/1443 (45%), Gaps = 156/1443 (10%)
Query: 95 EEDNEKFLLKLKDRIERVGLDIP--TIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEG 152
E + + ++ + I+ + + V +++L+ A S PT N+ +L
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTR 60
Query: 153 FLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL-GKDLKFS 211
L K IL + G+IKP LT++LG P SG +TLL +A G +
Sbjct: 61 GFRKLK-KFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 212 GRVTYNGHGMEEFVPQRT--SAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELS 269
G +TY+G EE Y ++ D+H +TV ETL F+ARC+ R + +
Sbjct: 120 GVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 270 RREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGG 329
+ + D + GL +T VG++ +RG+SGG
Sbjct: 180 YAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 330 QRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE 389
+RKR++ E +G A+ D + GLDS+T + + +L+ S +IL+ T ++++ Q + +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 390 TYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWA 449
YELFD +I+L +G +Y GP + ++FE+MGFKCP+R+ ADFL +TS + Q
Sbjct: 274 AYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKP 332
Query: 450 NKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKS--------------KSHP-AAL 494
++ T +EF +++ +L E+ D+
Sbjct: 333 GYEKK-VPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTR 391
Query: 495 TTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVE 554
+ Y S +K C AR +L MK N F +F A + ++F + S
Sbjct: 392 PSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS--- 448
Query: 555 DGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPIT 614
D GALFFA++ F+ E++ P+ K R + + A ++ + I +IP
Sbjct: 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFK 508
Query: 615 FIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGS 674
IE ++ + Y++V F RF +L S LFR +GA+ + + A T +
Sbjct: 509 IIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAA 568
Query: 675 FANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSW---GHVP--PN 729
L + + GF + R + W W Y+ +P+ Y +L VNEF G+ + +VP
Sbjct: 569 ILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGG 628
Query: 730 STE-PLGVVILKSRGLFP------------NAY-----WYWIGVGALLGYVLLFNFLFTV 771
+ + G P ++ W G ++G+ + F F++ +
Sbjct: 629 YDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688
Query: 772 ALKYLDPFGKPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMI 831
++ + IL + K A K E + + + G +
Sbjct: 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKN----------------DIEAGEV 732
Query: 832 LPFEPHSITFDDIRYALDMPQEMKA-----------QGIPDDRLEFLKGVSGAFRPGVLT 880
L + DD+ DM +E I ++ L V G +PG LT
Sbjct: 733 LGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLT 792
Query: 881 ALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940
ALMG SGAGKTTL++VLA R T G ++G + +F R GY +Q D+H P T
Sbjct: 793 ALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTST 852
Query: 941 VYESLVYSAWLRLPPEVDSDTRKM-FVEEVMELVELNPIREALVGLPGVSGLSTEQRKRL 999
V ESL +SA+LR P V S + KM +VEEV++L+E+ +A+VG+PG GL+ EQRKRL
Sbjct: 853 VRESLRFSAYLRQPKSV-SKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRL 910
Query: 1000 TIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAF 1058
TI VELVA P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS +F+ F
Sbjct: 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEF 970
Query: 1059 DELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAAL 1118
D LLL+++GG+ +Y G LG + +I YFE G PK E NPA WMLEV A A
Sbjct: 971 DRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGAAPGAHA 1029
Query: 1119 GINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQT---RYSQSFFTQCMACLWKQHL 1175
++ +V++NS Y+ K + L +++ +Y+ S + Q LW+
Sbjct: 1030 NQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQ 1089
Query: 1176 SYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNAT 1235
YWR P Y + F T F AL G F+ +G+ + Q L N M +++ A +
Sbjct: 1090 QYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLIQQ 1146
Query: 1236 SVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTV 1295
+ P VA RER + +S L + Q+ +E+P+ + I+ I Y +GF W
Sbjct: 1147 YLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNA 1206
Query: 1296 SK-------FLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFII 1348
SK + + L + FLYF+ G M ++ PN + AA++AS + + F G +
Sbjct: 1207 SKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLA 1266
Query: 1349 PRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDTF----------DSGQKVGDFVKDY 1398
P RMP +W + P ++ + L+++ DV T SGQ G+++K Y
Sbjct: 1267 PPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPY 1326
Query: 1399 ---------------------FGYDHDMLGVVAVVHVGLVVLFG----FTFAYSIKAFNF 1433
+ Y +D L ++ + G FG F F I F
Sbjct: 1327 LENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFNIIATVFF 1386
Query: 1434 QHR 1436
Sbjct: 1387 YWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 347 bits (893), Expect = e-105
Identities = 172/534 (32%), Positives = 272/534 (50%), Gaps = 26/534 (4%)
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-VSGSITISGYPKNQET 921
R LK VSG +PG L A+MG SGAGKTTLM+ LA R G SGS+ ++G P + +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 922 FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA 981
IS Y +Q D+ P +TV E L++ A LR+P V ++ V+EV++ + L
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 982 LVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1040
+G+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 1041 RTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGY 1100
+T++CTIHQPS ++F+ FD+++LM G Y+G Q + +F + G P E Y
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GHP-CPENY 269
Query: 1101 NPATWMLEV--TTPAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQ--- 1155
NPA + ++V P E K+ + + ++M+ ++ + L
Sbjct: 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSEN 329
Query: 1156 ---TRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANR 1212
Y+ S++TQ A L + LS R+P VRL T A++ G I+ G +
Sbjct: 330 MEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGV 389
Query: 1213 QDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELP 1272
Q N G+++ + + QN V V E VF RE +G+Y Y + + ELP
Sbjct: 390 Q---NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELP 446
Query: 1273 HIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAII 1332
I ++ I Y MIG + FL +L + L T +G + + ++A +
Sbjct: 447 LFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506
Query: 1333 ASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLY---GLVASQFGDVND 1383
F + + LF GF I +P++++W ++ SW Y GL+ +Q+ DV++
Sbjct: 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYL---SWFRYGNEGLLINQWSDVDN 557
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 305 bits (783), Expect = 1e-95
Identities = 105/239 (43%), Positives = 143/239 (59%), Gaps = 47/239 (19%)
Query: 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMD 895
+T+ ++ Y + + + + L +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 896 VLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955
VLAGRKT G ++G I I+G P + + F R +GY EQ D+HSP++TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 956 EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1015
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1016 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IF+ FD LLL+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 2e-73
Identities = 96/237 (40%), Positives = 139/237 (58%), Gaps = 45/237 (18%)
Query: 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 897
+++F ++ + + LK VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 898 AGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEV 957
AGR+TG VSG + I+G P ++ +F +I GY Q DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 958 DSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1017
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1018 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
TSGLD+ +A VM +R DTGRT++C+IHQPS +IF+ FD+LLL+ + G IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 6e-72
Identities = 164/639 (25%), Positives = 279/639 (43%), Gaps = 77/639 (12%)
Query: 158 HVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217
+ +L +VSG+ KP L ++G +GKTTL+ ALA + K +K SG V N
Sbjct: 29 GCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLN 88
Query: 218 GHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI 277
G ++ + SAY+ Q+DL I +TVRE L F A
Sbjct: 89 GMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH----------------------- 125
Query: 278 KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE-MLRGISGGQRKRLTT 336
L M + +++ V D VL+ LGL CA+T +G ++G+SGG+RKRL
Sbjct: 126 -------LRMPRRVTKKEKRERV-DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 337 GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNG--TAVISLLQPAPETYELF 394
L+ LF DE ++GLDS Y +V L+ + T + ++ QP+ E +ELF
Sbjct: 178 ASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLK---GLAQKGKTIICTIHQPSSELFELF 234
Query: 395 DDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEP 454
D +IL+++G++ Y G + + FF +G CPE ADF +V + P
Sbjct: 235 DKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLA-----------VIP 283
Query: 455 YSFVTAKE-FSEVFQSFHIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAR 513
S ++E ++ SF + D L S + + + + +
Sbjct: 284 GSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSE-NMEGIGYNASWWTQ 342
Query: 514 EYLLMKR-------NSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFA 566
Y L+KR + + ++ Q +A + ++L + + V++ GALF
Sbjct: 343 FYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN---GALFLF 399
Query: 567 VITIMF-NGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMT 625
+ + F N F +++ +LPVF ++ + AY L I ++P+ I ++ +T
Sbjct: 400 LTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSIT 459
Query: 626 YYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGG 685
Y+++G S F+ FL+ V A+ L+ + +A T G + L+ GG
Sbjct: 460 YWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGG 519
Query: 686 FILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPP------NSTEPL---GV 736
F ++ D + ++ W + S YG L +N+ W V N+T P G
Sbjct: 520 FFINSDSIPVYFKWLSYLSWFRYGNEGLLINQ-----WSDVDNIECTSANTTGPCPSSGE 574
Query: 737 VILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKY 775
VIL++ ++ + L+ + F L AL+
Sbjct: 575 VILETLSF--RNADLYLDLIGLVILIFFFRLLAYFALRI 611
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 3e-59
Identities = 70/216 (32%), Positives = 112/216 (51%), Gaps = 7/216 (3%)
Query: 1164 TQCMACLWKQHLSYWRNPPYT-AVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSM 1222
TQ A L ++ L WR+P RL +AL+FGT+F ++ N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLL 56
Query: 1223 YAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYG 1282
+ +ILF + T + PV ER V RE A+ +YS Y ++++ELP +QA+I+
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1283 VIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNL 1342
+IVY M+G S+F +LL + LT L + G+ A+ P+ A+ I + L
Sbjct: 117 LIVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1343 FSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQF 1378
SGF IP MP W +W ++ P+++ + L A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 9e-55
Identities = 83/210 (39%), Positives = 121/210 (57%), Gaps = 8/210 (3%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-VSGSITISGYPKNQETFARI 925
L VS G + A++G SG+GKTTL+D ++GR GG SG I +G P+ + F +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 926 SGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVE-EVMELVELNPIREALVG 984
Y Q DI P +TV E+L Y+A LRLP + RK VE ++ + L I LV
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV- 141
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 142 ----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 1045 CTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
TIHQP D+F FD +LL+ GE +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 1e-52
Identities = 150/542 (27%), Positives = 260/542 (47%), Gaps = 55/542 (10%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L GV+G PG + A++G SG+GK+TL++ LAGR G +G+I + ++ R
Sbjct: 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT- 142
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
G+ Q DI PH+TV E+LV+ + LRLP + + + E V+ + L ++G
Sbjct: 143 GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNS 202
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1046
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V +
Sbjct: 203 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262
Query: 1047 IHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWM 1106
+HQPS ++ FD +L++ G ++ G S + YFE + P NPA ++
Sbjct: 263 MHQPSSRVYQMFDSVLVLSE-GRCLFFGKG----SDAMAYFESVGFSPSFP--MNPADFL 315
Query: 1107 LEVTT-------------PAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLY 1153
L++ P + +L ++ N+ L K I+ P N
Sbjct: 316 LDLANGVCQTDGVSEREKPNVKQSLVASY-----NTLLAPKVKAAIEMSHFP---QANAR 367
Query: 1154 FQTRYSQ------------SFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTI 1201
F S ++F Q + L ++ L ++ + +R+F AL+ G +
Sbjct: 368 FVGSASTKEHRSSDRISISTWFNQ-FSILLQRSLKERKHESFNTLRVFQVIAAALLAGLM 426
Query: 1202 FWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALP 1261
+W ++ +D+ + +G ++ +F GV + + V ER +F +ERA+GMY+
Sbjct: 427 WW-----HSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSS 481
Query: 1262 YAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVA 1321
Y ++V +LP I I+ + Y M G + FL LL + L G+ A
Sbjct: 482 YFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGA 541
Query: 1322 VTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYG---LVASQF 1378
+ A+ I + + + L GF + ++P WI +S T Y L+ Q+
Sbjct: 542 AIMDAKKASTIVTVTMLAFVLTGGFYV--HKLP---SCMAWIKYISTTFYSYRLLINVQY 596
Query: 1379 GD 1380
G+
Sbjct: 597 GE 598
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-46
Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 17/229 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP--KNQETFAR 924
L GVS PG + L+G +GAGKTTL+ +LAG SG I + GY K R
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRR 78
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984
GY Q P +TV E+L + A L + +++ R +EE++EL L V
Sbjct: 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKKV- 134
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R G +
Sbjct: 135 ----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI 190
Query: 1045 CTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGV 1093
+ + D ++++ G+ I G +L + F G +
Sbjct: 191 LLSTHILEEAEELCDRVIILND-GKIIAEGTP----EELKEKFGGKGVI 234
|
Length = 293 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-42
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 505 ELLKACFAREYLLMKRNSFVYFF-KMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGAL 563
LKA RE+L R+ + ++ Q A V T+F + T G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLL 56
Query: 564 FFAVITIMFNGFSELSMTIMK-LPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWV 622
FF+++ F+ + +S ++ V ++ + AY L ++++PI+ ++ I++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 623 FMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLV 682
+ Y++VG + RF +LL ASGL + AL + A+ G L +L+
Sbjct: 117 LIVYFMVGL--PVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 683 LGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEF 718
L GF + D + W W Y+ +P+ Y AL NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 4e-41
Identities = 74/241 (30%), Positives = 125/241 (51%), Gaps = 36/241 (14%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR 228
IL+DVS ++ ++ +LG SGKTTLL A++G++ SG++ +NG + Q+
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 229 TSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMK 288
AY+ Q+D+ + +TVRETL ++A + L S
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILR--------LPRKSS------------------ 115
Query: 289 AASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348
+ K V D +L+ A T +G +++GISGG+R+R++ L+ + L
Sbjct: 116 ----DAIRKKRVEDVLLR-----DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLI 166
Query: 349 MDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQ 408
+DE ++GLDS T +V++L Q N ++++ QP + + LFD ++LLS G+IVY
Sbjct: 167 LDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225
Query: 409 G 409
G
Sbjct: 226 G 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 5e-40
Identities = 140/535 (26%), Positives = 260/535 (48%), Gaps = 66/535 (12%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
TIL+ V+G+ P + +LGP SGK+TLL ALAG++ + F+G + N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 228 RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIM 287
RT +++Q+D+ +TVRETL F + L+
Sbjct: 141 RT-GFVTQDDILYPHLTVRETLVFCS-------------------------------LLR 168
Query: 288 KAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG-EMLVGPARA 346
SL QEK +V + V+ LGL C +T++G+ +RGISGG+RKR++ EML+ P+
Sbjct: 169 LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-L 227
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406
L +DE ++GLD++ Y++V +L T V S+ QP+ Y++FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 407 YQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEP---YSFVTAKEF 463
+ G + + +FE +GF ADFL ++ + Q + +++P S V +
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVAS--- 343
Query: 464 SEVFQSFHIGQ-KLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKR-- 520
+ + + K E++ + + +TK++ +S + + F + +L++R
Sbjct: 344 ---YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSL 400
Query: 521 -----NSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGF 575
SF ++FQ+ +A +A ++ ++ V+D +G LFF I F G
Sbjct: 401 KERKHESF-NTLRVFQVIAAALLAGLMWWHSDFR--DVQD---RLGLLFFISI---FWGV 451
Query: 576 SELSMTIMKLP----VFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGF 631
++ P +F K+R + +Y + + +P+ I I++ +TY++ G
Sbjct: 452 FPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGL 511
Query: 632 ESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGF 686
+ + F+ +LL + GL +GA + A+T + L ++ GGF
Sbjct: 512 KPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGT 378
G+E +RGISGG+RKR++ E LV A L D + GLDSST +I+ +R +L T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 379 AVISLLQPAPETYELFDDLILLSDGQIVYQG 409
+SL Q + E Y+LFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-33
Identities = 82/288 (28%), Positives = 128/288 (44%), Gaps = 51/288 (17%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
T L VS ++P + LLGP +GKTTLL LAG L SG + G+ + + +
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAK 75
Query: 228 --RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
R Y+ Q E+TVRE L F AR G+ E+
Sbjct: 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE-------AEERI----------- 117
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
+ +L++ GLE A+ V R +SGG ++RL+ L+
Sbjct: 118 ----------------EELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPE 156
Query: 346 ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVIS--LLQPAPETYELFDDLILLSDG 403
L +DE ++GLD + +I LR+ T ++S +L+ E EL D +I+L+DG
Sbjct: 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVIILNDG 213
Query: 404 QIVYQGPRENVLEFFERMGFKC--PERKGVADFLQEVTSRKDQEQYWA 449
+I+ +G E + E F G PER +A+ L+ + K +E+
Sbjct: 214 KIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-33
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 38/213 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVS--GSITISGYP--KNQETF 922
LK SG +PG + ++G G+G +TL+ LA R T G VS G I +G P + E +
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYKEFAEKY 81
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
Y + D+H P +TV E+L ++ +
Sbjct: 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------------ 111
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1041
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R D
Sbjct: 112 -GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT 170
Query: 1042 TVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
T +++Q S +I+D FD++L++ G +IY G
Sbjct: 171 TTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 72/203 (35%), Positives = 103/203 (50%), Gaps = 15/203 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP--KNQETFAR 924
L GVS PG+ L+G +GAGKTTLM +LA SG+I I G K + R
Sbjct: 16 LDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQPQKLRR 72
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984
GY Q P+ TV E L Y AWL+ + S K V+EV+ELV L + +G
Sbjct: 73 RIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIG 129
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + + R V+
Sbjct: 130 -----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGEDRIVI 183
Query: 1045 CTIHQPSIDIFDAFDELLLMKRG 1067
+ H D+ +++ ++ +G
Sbjct: 184 LSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 149 MLEGFLNYLHVLPSRKKP-LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD 207
+ + + + IL D SG++KP + L+LG P SG +TLL ALA + +
Sbjct: 1 ASTLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN 60
Query: 208 LKFSGRVTYNGHGMEEF--VPQRTSAYISQNDLHIGEMTVRETLAFSARCQG 257
+ G + YNG +EF Y+S+ D+H +TVRETL F+ RC+G
Sbjct: 61 VSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 5e-31
Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFA- 923
+ +S G + L+G +GAGKTT + +L G R T SG+ I+GY + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 924 -RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
+ GYC Q D +TV E L + A L+ P+ K VE ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1043 VVCTIH 1048
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 7e-31
Identities = 42/65 (64%), Positives = 48/65 (73%)
Query: 723 WGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKP 782
W S E LG +LKSRGLF AYWYWIGVGALLG+ +LFN LFT+AL YL+P GK
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 783 QAILS 787
QAI+S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 23/209 (11%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET---FA 923
L +S + G ++G +G+GK+TL+ +L G G SG + + G + +
Sbjct: 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKELR 74
Query: 924 RISGYCEQTDIHSP-----HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
R G Q +P TV E + + PE + + R VEE +ELV L +
Sbjct: 75 RKVGLVFQ----NPDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEGL 127
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038
R+ LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 128 RDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA 182
Query: 1039 TGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
G+T++ H + + D +++++ G
Sbjct: 183 EGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-27
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 154 LNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGR 213
L K +L +VSG KP LT ++GP +GK+TLL ALAG+ L SG
Sbjct: 9 LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGE 67
Query: 214 VTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGV 258
V NG +++ ++ Y+ Q+D+ +TVRETL F+A+ +G+
Sbjct: 68 VLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-25
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L+ VS +PG A++G +GAGK+TL+ + G + T SGSI + G P +E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 925 ISGYCEQT---DIHSPHVTVYESLVYSAWLR----LPPEVDSDTRKMFVEEVMELVELNP 977
I GY Q D P ++V + +V +D K V+E +E V L+
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRD-VVLMGLYGHKGLFRRLSKADKAK--VDEALERVGLSE 124
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
+ + +G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 125 LADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179
Query: 1038 DTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
G T++ H + + + FD +LL+ R
Sbjct: 180 REGMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-24
Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP--KNQETF 922
L +S G + L+G +GAGKTTL+ ++ G + SG I + G K E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEV 71
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
R GY + ++TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1043 VVCTIHQPSIDIFDAFDELLLMKRG 1067
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 23/210 (10%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L+ +S + G +TAL+G +GAGK+TL+ + G SG I I G P +
Sbjct: 20 LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLRI 77
Query: 927 GYCEQT---DIHSPHVTVYESLVYS------AWLRLPPEVDSDTRKMFVEEVMELVELNP 977
GY Q D P +TV + +V W R + D ++ V+E +E V +
Sbjct: 78 GYVPQKSSVDRSFP-ITVKD-VVLLGRYGKKGWFRRLNKKD---KEK-VDEALERVGMED 131
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
+R+ +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 132 LRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186
Query: 1038 DTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
G+TV+ H + + FD ++ + R
Sbjct: 187 QEGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 4e-23
Identities = 54/213 (25%), Positives = 81/213 (38%), Gaps = 61/213 (28%)
Query: 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP-----KN 918
L VS G + AL+G SG+GK+TL+ +AG SGSI I G
Sbjct: 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD----SGSILIDGEDLTDLEDE 70
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
R G Q PH+TV E++
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------------- 99
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038
GLS Q++R+ +A L +P ++ +DEPTS LD V +++
Sbjct: 100 -----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA 148
Query: 1039 T-GRTVVCTIHQPSIDIFDAF---DELLLMKRG 1067
G TVV H D+ +A D +++++ G
Sbjct: 149 QLGITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 5e-23
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 29/214 (13%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG---YPKNQETFA 923
L +S + G +T ++G +G+GK+TL+ LAG SG + + G + + A
Sbjct: 18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELA 75
Query: 924 RISGYCEQTDIHSPHVTVYESLV------YSAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
+ Y Q+ +TVYE LV + P + D + VEE +EL+ L
Sbjct: 76 KKLAYVPQSPSAPFGLTVYE-LVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGLEH 130
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1036
+ + V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 131 LADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185
Query: 1037 VDTGRTVVCTIHQPSIDIFDAF---DELLLMKRG 1067
+ G TVV +H ++ A D L+L+K G
Sbjct: 186 REKGLTVVMVLHDLNL----AARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSITISGYPKNQETF 922
L +S PG AL+G SG GKTTL+ ++AG R G + ++G P +
Sbjct: 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER--- 71
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
R G Q PH+TV E++ + LR P+ + R V E++ELV L +
Sbjct: 72 -RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGLLNRY 127
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGR 1041
LS Q++R+ +A L PS++ +DEP S LDA+ + ++ + G
Sbjct: 128 P-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGI 182
Query: 1042 TVVCTIHQPSIDIFDAF---DELLLMKRG 1067
T + H D +A D + +M G
Sbjct: 183 TTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 3e-22
Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 30/226 (13%)
Query: 855 KAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG 914
K G ++++ LKGVS + G A++G SG+GK+TL+++L G SG + + G
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDG 65
Query: 915 YPKNQETFARIS-------GYCEQTDIHS--PHVTVYESLVYSAWLRLPPE---VDSDTR 962
++ + ++ G+ Q+ + P +T E++ LP V R
Sbjct: 66 TDISKLSEKELAAFRRRHIGFVFQS--FNLLPDLTALENV------ELPLLLAGVPKKER 117
Query: 963 KMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+ EE++E V L S LS Q++R+ IA L +P II DEPT LD
Sbjct: 118 RERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 1023 ARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ VM +R + G T+V H P ++ + D ++ ++ G
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 8e-22
Identities = 61/202 (30%), Positives = 93/202 (46%), Gaps = 16/202 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L +S G + AL G +GAGKTTL +LAG SGSI ++G P + +
Sbjct: 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG--LIKESSGSILLNGKPIKAKERRKSI 73
Query: 927 GYCEQT-DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL 985
GY Q D +V E L+ E+D+ + E V++ ++L ++E
Sbjct: 74 GYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQ--AETVLKDLDLYALKERH--- 123
Query: 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1045
P LS Q++RL IA L++ ++ DEPTSGLD + V +R G+ V+
Sbjct: 124 P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV 181
Query: 1046 TIHQPSIDIFDAFDELLLMKRG 1067
H + D +LL+ G
Sbjct: 182 ITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 9e-22
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVIS 382
LRG+SGG+RKR++ LV LF+DE ++GLDSS+ Q+++ LR+ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICS 167
Query: 383 LLQPAPETYELFDDLILLSDGQIVYQG 409
+ QP+ E +ELFD L+LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 4e-20
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 855 KAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG 914
K ++ + GVS +PG +T L+G +GAGKTT + +LAG +G T+ G
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDG 66
Query: 915 YPKNQETFA---RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVME 971
+ +E R+ + T ++ +T E+L Y A L + D +EE+ +
Sbjct: 67 FDVVKEPAEARRRLGFVSDSTGLY-DRLTARENLEYFAGLY---GLKGDELTARLEELAD 122
Query: 972 LVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
+ + + + VG G ST R+++ IA LV +P ++ +DEPT+GLD A +
Sbjct: 123 RLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
Query: 1032 TVRNTVDTGRTVVCTIH 1048
+R G+ ++ + H
Sbjct: 178 FIRQLRALGKCILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 5e-20
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 154 LNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGR 213
LNY +P + +L+++SG +KP LT L+G +GKTTLL LAG+ +G
Sbjct: 9 LNY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR-KTAGVITGE 65
Query: 214 VTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPR 261
+ NG +++ QR++ Y+ Q D+H +TVRE L FSA +G+
Sbjct: 66 ILINGRPLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 88.6 bits (221), Expect = 5e-20
Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 53/208 (25%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYVSGSITISGYPKNQETFARI 925
L +S + G + ++G +GAGK+TL+ LAG K SG I + G
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDG----------- 60
Query: 926 SGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKM-FVEEVMELVELNPIREALVG 984
D+ L P+ + RK+ +V + +EL+ L + +
Sbjct: 61 ------KDLA----------------SLSPKELA--RKIAYVPQALELLGLAHLADR--- 93
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1043
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R G+TV
Sbjct: 94 --PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTV 151
Query: 1044 VCTIHQPSIDIFDAF---DELLLMKRGG 1068
V +H ++ A D ++L+K G
Sbjct: 152 VMVLHDLNL----AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 6e-20
Identities = 58/210 (27%), Positives = 86/210 (40%), Gaps = 43/210 (20%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
LK VS + PG AL+G SGAGK+TL+ L G SGS+ I G N+ +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALR 74
Query: 927 GYCEQTD-IH-----SPHVTVYE----------SLVYSAWLRLPPEVDSDTRKMFVEEVM 970
Q I ++V E S S + P E + ++
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE---EKQRAL----- 126
Query: 971 ELVELNPIREAL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
AL VGL LS Q++R+ IA L+ P +I DEP + LD
Sbjct: 127 ---------AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP 177
Query: 1024 RAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 1052
++ VM ++ + G TV+ ++HQ +
Sbjct: 178 ASSRQVMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 7e-20
Identities = 63/256 (24%), Positives = 102/256 (39%), Gaps = 61/256 (23%)
Query: 163 RKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME 222
+K + D+S + + LLG +GKTT L L G+L SG NG+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI- 66
Query: 223 EFVPQRTSA-----YISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI 277
R +A Y Q D E+TVRE L F AR +G
Sbjct: 67 --RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG-------------------- 104
Query: 278 KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG 337
L E + +L++LGL A+ +SGG +++L+
Sbjct: 105 --------------LPKSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 338 EMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI----SLLQPAPETYEL 393
L+G L +DE ++GLD ++ I + + + G ++I S+ E L
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSMD----EAEAL 198
Query: 394 FDDLILLSDGQIVYQG 409
D + ++SDG++ G
Sbjct: 199 CDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 30/226 (13%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP--- 916
R LK VS G L+G +G+GK+TL+ +L G + T SG + + G
Sbjct: 15 GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT----SGEVLVDGLDTSS 70
Query: 917 -KNQETFARISGYCEQTDIHSPHV-----TVYESLVYSAWLRLPPEVDSDTRKMFVEEVM 970
K+ + G Q +P TV + + + L + + V E +
Sbjct: 71 EKSLLELRQKVGLVFQ----NPDDQLFGPTVEDEVAFGL-ENLGLPREEIEER--VAEAL 123
Query: 971 ELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1030
ELV L + + LS Q++R+ IA L P I+ +DEPT+GLD + ++
Sbjct: 124 ELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL 178
Query: 1031 RTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075
++ + G+T++ H + + D ++++ G+ + G
Sbjct: 179 ELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-19
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1047
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1048 HQPSIDIFDAFDELLLMKRG 1067
H P A D ++++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 2e-19
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 16/186 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP--KNQETF 922
+ GV+ R G + +G +GAGKTT + +L R T SG+ ++GY +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT----SGTARVAGYDVVREPRKV 64
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
R G Q +T E+L L P+ +++ R EE++EL EL +
Sbjct: 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGEAADRP 121
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R + G T
Sbjct: 122 VG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 1043 VVCTIH 1048
++ T H
Sbjct: 177 ILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 31/230 (13%)
Query: 855 KAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSIT 911
K G+ +++E LK V+ G A++G SG+GK+TL+++L G + T G V
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 912 ISGYPKNQ--ETFARISGYCEQTDIHS--PHVTVYESLVYSAWLRLPPEVDSDTRKMFVE 967
++ + + + + G+ Q + P +TV E++ LP + +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENV------ELPLLIAGKSAGRRKR 120
Query: 968 EVMELVELNPIREALVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021
EL+E+ +GL S LS Q++R+ IA L+ NP II DEPT L
Sbjct: 121 AAEELLEV-------LGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL 173
Query: 1022 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070
D++ A V+ +R + G+T++ H P ++ D ++ +K G E
Sbjct: 174 DSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKIE 221
|
Length = 226 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-19
Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 41/243 (16%)
Query: 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896
I F ++ ++ QE+ A L VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-NQEIPA----------LDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 897 LAGRKTGGYVSGSITISGYPKNQETFARIS---GYCEQTDIHSPHVTVYESLVYSAWLRL 953
LAG SGS+ + G Q A + GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPT--SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLP---------GVSGLSTEQRKRLTIAVE 1004
P D E ++ EL + + + P GLS QR+ + +A
Sbjct: 103 -PLADD-------ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
Query: 1005 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ D D +++M
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVM 211
Query: 1065 KRG 1067
G
Sbjct: 212 DSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 5e-19
Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 40/200 (20%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV--SGSIT-----ISGYPKNQ 919
L VS + RPG + L+G +GAGKTTL +++ +G SGS+ I+G P ++
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLI----SGFLRPTSGSVLFDGEDITGLPPHE 71
Query: 920 -------ETFARISGYCEQTDIHSPHVTVYESLV--------YSAWLRLPPEVDSDTRKM 964
TF + P +TV E+++ L + + R+
Sbjct: 72 IARLGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARER 123
Query: 965 FVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
EE++E V L + + G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 124 -AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPE 177
Query: 1025 AAAIVMRTVRNTVDTGRTVV 1044
+ +R + G TV+
Sbjct: 178 ETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 5e-19
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK---NQETFA 923
L ++ + G LTAL+G SGAGK+TL+++L G G I ++G + E +
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT--QGEIRVNGIDLRDLSPEAWR 394
Query: 924 RISGYCEQTDIHSPHV---TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
+ + Q +P++ T+ E++ L SD + ++ L
Sbjct: 395 KQISWVSQ----NPYLFAGTIRENI------LLARPDASDEE---IIAALDQAGLLEFVP 441
Query: 981 ALVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I+++ ++
Sbjct: 442 KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501
Query: 1036 TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIK 1085
+TV+ H+ D DA D ++++ G + G H K
Sbjct: 502 LAK-QKTVLVITHRLE-DAADA-DRIVVLDNGR----LVEQGTHEELSEK 544
|
Length = 559 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 6e-19
Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 823 DQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTAL 882
+ K + LP I F+++ + P L+ +S PG A+
Sbjct: 456 QEGDKTLIHLPKLQGEIEFENVSFRYG-------PDDPPV----LEDLSLEIPPGEKVAI 504
Query: 883 MGVSGAGKTTLMDVLAGRKTGGYV--SGSITISGYPKNQ---ETFARISGYCEQTDIHSP 937
+G SG+GK+TL+ +L G Y G I + G N + R GY Q D
Sbjct: 505 VGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ-DPFLF 559
Query: 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP---------GV 988
++ E++ L +D EE++E +L E + LP G
Sbjct: 560 SGSIRENI------ALGNPEATD------EEIIEAAQLAGAHEFIENLPMGYDTPVGEGG 607
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
+ LS QR+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+ H
Sbjct: 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAH 666
Query: 1049 QPSIDIFDAFDELLLMKRG 1067
+ S + D ++++ +G
Sbjct: 667 RLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 7e-19
Identities = 66/253 (26%), Positives = 101/253 (39%), Gaps = 60/253 (23%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220
P +P L D+S IK L++GP SGK+TLL L G LG SG V +G
Sbjct: 10 PDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKD 64
Query: 221 MEEFVPQ---RTSAYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAAN 276
+ + + R + QN D TV E +AF G+ P E+ +
Sbjct: 65 LTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEIEE---------- 113
Query: 277 IKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTT 336
+ L+++GLE D L SGGQ++R+
Sbjct: 114 -----------------------RVEEALELVGLEGLRDRSP--FTL---SGGQKQRVAI 145
Query: 337 GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVIS-----LLQPAPETY 391
+L L +DE + GLD + +++ L++ + T +I LL
Sbjct: 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK-LKAEGKTIIIVTHDLDLL------L 198
Query: 392 ELFDDLILLSDGQ 404
EL D +I+L DG+
Sbjct: 199 ELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 85.1 bits (212), Expect = 8e-19
Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 65/232 (28%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
I F ++ ++ P LK VS +PG A++G SG+GK+TL+ +L
Sbjct: 1 IEFKNVSFS-----------YPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49
Query: 899 GRKTGGYVSGSITISGYPK---NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955
SG I I G + E+ + Y Q +L
Sbjct: 50 RLYD--PTSGEILIDGVDLRDLDLESLRKNIAYVPQ----------------DPFLF--- 88
Query: 956 EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1015
S T IRE + LS QR+R+ IA L+ +P I+ +D
Sbjct: 89 ---SGT----------------IRENI--------LSGGQRQRIAIARALLRDPPILILD 121
Query: 1016 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
E TS LD A+++ +R + G+TV+ H+ S D ++++ G
Sbjct: 122 EATSALDPETEALILEALRA-LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 9e-19
Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 16/193 (8%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQ 919
E LKG++ A G + AL+G +GAGK+TL+ L G R G V Y +
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 920 ETFARIS-GYCEQT---DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
R G Q + + V + + + L L R+ V E + V
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAVGA 117
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
+ +RE LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 118 SGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 1036 TVDTGRTVVCTIH 1048
G TVV + H
Sbjct: 173 LRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP--KNQE 920
E ++GVS R G + L+G +GAGKTT + +L + T SG T++G+ +
Sbjct: 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT----SGRATVAGHDVVREPR 69
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
R G Q +T +E+L A L V R+ ++E+++ V L +
Sbjct: 70 EVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAAD 126
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1039
LV S R+RL IA LV P ++F+DEPT GLD + A V + +
Sbjct: 127 RLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF 181
Query: 1040 GRTVVCTIH 1048
G T++ T H
Sbjct: 182 GMTILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 4e-18
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISG--YPKNQETF 922
L +S + G + +G +GAGKTT M ++ G + SG IT G Y KN E
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD----SGEITFDGKSYQKNIEAL 71
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
RI E + P++T E+L A L + ++EV+++V L +
Sbjct: 72 RRIGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKK 123
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G T
Sbjct: 124 VK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 1043 VVCTIHQ 1049
V+ + H
Sbjct: 179 VLISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-18
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 37/227 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSITISGYPKNQETFA 923
+ +S + G L+G SG GKTTL+ ++AG + + G + I+ P +
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK---- 76
Query: 924 RISGYCEQTDIHS----PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
R G Q S PH+TV E++ + L++ ++ K VEE +ELV L
Sbjct: 77 RPIGMVFQ----SYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFA 130
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1038
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ +
Sbjct: 131 DRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE 185
Query: 1039 TGRTVVCTIHQPSIDIFDAF---DELLLMKRG-------GEEIYVGP 1075
G T V H D +A D + +M G EEIY P
Sbjct: 186 LGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228
|
Length = 352 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 6e-18
Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 22/199 (11%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP---K 917
L GVS PG A++G SG+GK+TL+ LAG + G +T+ G P
Sbjct: 345 PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSL 402
Query: 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-N 976
+Q+ R C Q D H TV E+L + P+ + + +E V L +
Sbjct: 403 DQDEVRRRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLAD 452
Query: 977 PIREALVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
+R GL G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 453 WLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLE 512
Query: 1032 TVRNTVDTGRTVVCTIHQP 1050
+ +GRTVV H
Sbjct: 513 DLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 7e-18
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 41/220 (18%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGY------PKN 918
LKGV R G + A++G SG+GK+TL+ ++ G R SG + I G
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD----SGEVLIDGEDISGLSEAE 71
Query: 919 QETFARISGYCEQ-----TDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV 973
R G Q + TV+E++ + LR + ++ EE+ E+V
Sbjct: 72 LYRLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIV 117
Query: 974 ELNPIREALVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028
+ VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ +
Sbjct: 118 LE---KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
Query: 1029 VMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ +R+ G T + H F D + ++ G
Sbjct: 175 IDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 21/207 (10%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV--SGSITISGYPKNQE---T 921
L VS RPG AL+G +GAGK+TL +L T YV G I+++G+ +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 922 FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA 981
AR+ G Q ++V ++L Y A L ++ R + E++ + L +
Sbjct: 73 LARL-GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1040
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1041 RTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+V+ H +D +A D L+++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-17
Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 28/203 (13%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK---N 918
R L+ VS PG AL+G SGAGK+TL+++L G GSI ++G P +
Sbjct: 333 GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADAD 390
Query: 919 QETFARISGYCEQTDIHSPHV---TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
+++ + Q P + T+ E++ + P+ + E +E L
Sbjct: 391 ADSWRDQIAWVPQH----PFLFAGTIAENIRLAR-----PDASDAE----IREALERAGL 437
Query: 976 NPIREAL-VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
+ AL GL G +GLS Q +RL +A + + ++ +DEPT+ LDA A V
Sbjct: 438 DEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV 497
Query: 1030 MRTVRNTVDTGRTVVCTIHQPSI 1052
+ +R + GRTV+ H+ ++
Sbjct: 498 LEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 39/230 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP------KNQE 920
LK ++ PG A++G SGAGK+TL+ + SGSI + G K
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLR 75
Query: 921 TFARISGYCEQTDIHSPHVTVYESLV---------YSAWLRLPPEVDSDTRKMFVEEVME 971
R G Q +TV E+++ + + L E D E +
Sbjct: 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDK-------ERALS 128
Query: 972 LVELNPIREALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
+E VGL LS Q++R+ IA L P +I DEP + LD + +
Sbjct: 129 ALER-------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
Query: 1027 AIVMRTVRN-TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075
VM ++ + G TV+ +HQ +D+ + + ++ + GE ++ G
Sbjct: 182 KQVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 20/174 (11%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYVSGSITISGYPKNQETFA 923
LK +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 924 RIS-----GYCEQTDIHSP---HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
+ G Q P ++Y+++ Y L + VEE + L
Sbjct: 76 VLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAAL 129
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
E L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 130 W--DEVKDRLHA-LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 4e-17
Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 18/211 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP----KNQETF 922
L +S + G L AL+G SGAGK+TL+ ++AG +T +G I ++G N
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVR 75
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRL--PPEVDSDTRKMFVEEVMELVELNPIRE 980
R G+ Q PH+TV +++ + +R P E + R VEE++ LV+L + +
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLAD 132
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-T 1039
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 133 R---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL 187
Query: 1040 GRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070
G T V H + + D ++++ +G E
Sbjct: 188 GVTTVFVTHDQE-EALELADRVVVLNQGRIE 217
|
Length = 345 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 16/192 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG-----YPKNQET 921
L G++ + G L+G SGAGK+TL+ ++ + SG+I ++G
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIP 74
Query: 922 FARIS-GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
+ R G Q P VYE++ EV + + V +EL +
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVA------FALEVTGVPPREIRKRVPAALELVGLSH 128
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1040
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G
Sbjct: 129 KHRALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 1041 RTVVCTIHQPSI 1052
TVV H +
Sbjct: 187 TTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 5e-17
Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 36/273 (13%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQ-ET 921
E LK V+ G L+G SG GK+TL+ ++AG T G + I G
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL----IDGRDVTDLPP 72
Query: 922 FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA 981
R Q PH+TVYE++ + LR P+ + D R V+EV +L+ L +
Sbjct: 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNR 129
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--T 1039
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ +
Sbjct: 130 KP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERL 183
Query: 1040 GRTVVCTIH-QPSIDIFDAFDELLLMKRGG-------EEIYVGPLGRHCSQLIKYFEGID 1091
G T + H Q D +++M G E+Y R + + F G
Sbjct: 184 GTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELY----ERPANLFVAGFIGSP 237
Query: 1092 GVPKIKEGYNPATWMLEVTTPAQEAA----LGI 1120
+ +K L + + A LGI
Sbjct: 238 PMNFLKAEVKADGNGLSIPEDKKVALEQVILGI 270
|
Length = 338 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 60/258 (23%), Positives = 98/258 (37%), Gaps = 48/258 (18%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD----LKFSGRVTYNGHGMEEF 224
L DVS I+ LL+GP SGK+TLL L G L K + G T + + E
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-LLKPTSGEVLVDGLDTSSEKSLLEL 77
Query: 225 VPQRTSAYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
+ + QN D + TV + +AF G+ R E +
Sbjct: 78 R--QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------PREEIEERVA----- 120
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
L+++GLE D + SGGQ++R+ +L
Sbjct: 121 -------------------EALELVGLEELLDRPPFNL-----SGGQKQRVAIAGVLAMG 156
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
L +DE + GLD +++ L++ + G +I + E D +++L DG
Sbjct: 157 PEILLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215
Query: 404 QIVYQGPRENVLEFFERM 421
+I+ G + E +
Sbjct: 216 KILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 17/198 (8%)
Query: 876 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS--GSITISGYPK-NQETFARISGYCE 930
+T + G SGAGK+TL+ +AG + GG + G++ K N R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 931 QTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990
Q PH+ V E+L + + E ++ V+E+++L+ L+ + +
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1049
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+ H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 1050 PSIDIFDAFDELLLMKRG 1067
S + D +++M+ G
Sbjct: 192 LS-EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 78/258 (30%), Positives = 112/258 (43%), Gaps = 56/258 (21%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
IL D+S I +T +LGP SGK+TLL LAG L SG V +G + P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 228 ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
+ AY+ Q+ +TV E + RY L R K D +
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLLG--------RYPHLGLFGRPSKE-------DEE 117
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
++ +A L++LGLE AD V + +SGG+R+R V A
Sbjct: 118 IVEEA---------------LELLGLEHLADRPVDE-----LSGGERQR-------VLIA 150
Query: 345 RAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397
RAL +DE ++ LD + +++ LR ++ G V+ +L D L
Sbjct: 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHL 209
Query: 398 ILLSDGQIVYQGPRENVL 415
ILL DG+IV QG E VL
Sbjct: 210 ILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA--- 923
++ VS G +T L+G +GAGKTTL+ ++A SG +TI G ++
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRR 75
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV 983
+I + +++ +T E+L Y A L + K + E+ + ++L + V
Sbjct: 76 KIGVLFGERGLYA-RLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRV 131
Query: 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1043
G ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V
Sbjct: 132 G-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 1044 VCTIH 1048
+ + H
Sbjct: 187 IFSSH 191
|
Length = 245 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 3e-16
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 31/215 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L GVS RPG + AL+G +GAGK+TLM +L+G SG I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 925 ISGYCEQTD-----IH-----SPHVTVYESLVYSAWLRLPPEVDSDTRKMFVE--EVMEL 972
S + +H P+++V E++ + D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGL-IDRKAMRRRARELLAR 132
Query: 973 VELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1032
+ L+ + LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 133 LGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL 187
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+R G ++ H+ ++F+ D + +++ G
Sbjct: 188 IRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 6e-16
Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
+ VS R G L+G SG+GK+TL +LAG SGSI G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRR 364
Query: 927 -------GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
+ + +P +TV + L LR+ R+ V E++ELV L P
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
E L P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 421 EFLDRYPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 14/183 (7%)
Query: 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP-KNQETFARIS- 926
G+S + G L+G +GAGKTT + +L G +GSI++ G P ++ AR
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRV 82
Query: 927 GYCEQTDIHSPHVTVYESL-VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL 985
G Q D P TV E+L V+ + L + + V ++E +L +A VG
Sbjct: 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLS----AAAARALVPPLLEFAKLENKADAKVG- 137
Query: 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1045
LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++
Sbjct: 138 ----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILL 193
Query: 1046 TIH 1048
T H
Sbjct: 194 TTH 196
|
Length = 306 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 1e-15
Identities = 51/212 (24%), Positives = 80/212 (37%), Gaps = 55/212 (25%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPK 917
P L+ VS + PG A++G SG+GK+TL ++ G R T SG + + G
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADI 66
Query: 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
+Q D + V + + EL
Sbjct: 67 SQ-------------------------------------WDPNELGDHVGYLPQDDELFS 89
Query: 978 --IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
I E + LS QR+RL +A L NP I+ +DEP S LD + + +
Sbjct: 90 GSIAENI--------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
Query: 1036 TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
G T + H+P + D +L+++ G
Sbjct: 142 LKAAGATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 71/280 (25%), Positives = 108/280 (38%), Gaps = 67/280 (23%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF----V 225
L D+S IK L LLGP +GK+TLL +AG D +GR+ NG + + V
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAV 74
Query: 226 PQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
R ++ Q+ MTV + +AF + + P E R + +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERP-----SEAEIRARVEEL-------- 121
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
L + + D +SGGQR+R V AR
Sbjct: 122 ------------------------LRLVQLEGLADRYPAQLSGGQRQR-------VALAR 150
Query: 346 A-------LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398
A L +DE LD+ ++ LR+ +H G + + E EL D ++
Sbjct: 151 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRK-LHDRLGVTTVFVTHDQEEALELADRVV 209
Query: 399 LLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEV 438
+L+ G+I GP + V + P + VA FL EV
Sbjct: 210 VLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
G+S G L G +G+GKTTL+ ++AG G TI + +
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG------TIKLDGGDID---- 67
Query: 925 ISGYCEQTDIH--------SPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN 976
E H P +TV E+L + A ++ + +E V L
Sbjct: 68 DPDVAEA--CHYLGHRNAMKPALTVAENLEFWAAFL-------GGEELDIAAALEAVGLA 118
Query: 977 PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1036
P+ LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R
Sbjct: 119 PLAH----LPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
Query: 1037 VDTGRTVVCTIHQPSIDIFDA 1057
+ G V+ H P + + A
Sbjct: 174 LAQGGIVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 39/237 (16%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
+ ++ K G + L+ +S + G AL+G SG GK+TL+ ++A
Sbjct: 1 LEVRNVS---------KTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA 51
Query: 899 GRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVD 958
G + SG + + G P R GY Q D P +TV +++ L L
Sbjct: 52 GLER--PTSGEVLVDGEPVTGPGPDR--GYVFQQDALLPWLTVLDNVALG--LELQGVPK 105
Query: 959 SDTRKMFVEEVMELVELNPIREALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIF 1013
++ R E EL+EL VGL G LS R+R+ +A L +P ++
Sbjct: 106 AEAR----ERAEELLEL-------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154
Query: 1014 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAF---DELLLMKR 1066
+DEP S LDA + + + +TG+TV+ H DI +A D ++++
Sbjct: 155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH----DIDEAVFLADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 30/213 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV--SGSITISGYPKNQETFAR 924
LK ++ + +PG A++G +GAGKTTL+++L Y G I I G +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIRDISRKS 74
Query: 925 IS---GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA 981
+ G Q D T+ E++ + V E + +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHDFIMK 124
Query: 982 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 125 LPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183
Query: 1035 NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ GRT + H+ S I +A D++L++ G
Sbjct: 184 KLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 63/275 (22%), Positives = 111/275 (40%), Gaps = 58/275 (21%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+L D+S ++ +T L+GP +GK+TLL A+ G L SG + G + + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 228 RTSAYISQNDLHIGE--MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
Y+ Q +TV++ + G + + L++++K
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKEK---------- 119
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
+ +A L+ +G+E D +G+ +SGGQ++R+ L
Sbjct: 120 VDEA---------------LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPD 159
Query: 346 ALFMDEISTGLDSSTT---YQIVNSLRQSIHILNGTAVISL---LQPAPETYELFDDLIL 399
L +DE TG+D + Y ++ LRQ G V+ + L FD +I
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQ-----EGKTVLMVTHDLGLVM---AYFDRVIC 211
Query: 400 LSDGQIVYQGPRENVL--EFFERMGFKCPERKGVA 432
L + ++ GP E VL E E+ F +A
Sbjct: 212 L-NRHLIASGPPEEVLTEENLEKA-FGGSLAHALA 244
|
Length = 254 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 9e-15
Identities = 70/264 (26%), Positives = 100/264 (37%), Gaps = 52/264 (19%)
Query: 158 HVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217
+ S + + DVS + +T LLG +GKTTLL +A L D SG+VT +
Sbjct: 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTID 62
Query: 218 GHGMEE---FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKA 274
G FV ++ + L+ +T RE L + AR L LSR+E
Sbjct: 63 GVDTVRDPSFVRRKIGVLFGERGLY-ARLTARENLKYFAR----------LNGLSRKEIK 111
Query: 275 ANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRL 334
A I + K L L D VG S G ++++
Sbjct: 112 ARI------------------------AELSKRLQLLEYLDRRVG-----EFSTGMKQKV 142
Query: 335 TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILN--GTAVISLLQPAPETYE 392
LV L +DE ++GLD T I L G AVI E
Sbjct: 143 AIARALVHDPSILVLDEPTSGLDIRTR----RKFHDFIKQLKNEGRAVIFSSHIMQEVEA 198
Query: 393 LFDDLILLSDGQIVYQGPRENVLE 416
L D +I+L G++V +G E +
Sbjct: 199 LCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 55/220 (25%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--VSGSITISG---- 914
+ + E LKGV+ + G + A+MG +G+GK+TL + G Y G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 915 -----------------YPKNQETFARISGYCEQTDIHSPHVTVYESLV--YSAWLRLPP 955
YP I G VT + L +A
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTNSDFLRAAMNARRGARG 114
Query: 956 EVDSDTRKMFVEEVMELVELNPI---REALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1012
+ +++ +E EL+ L+ R G G G ++KR I L+ P +
Sbjct: 115 ILPEFIKEL--KEKAELLGLDEEFLERYVNEGFSG--G----EKKRNEILQLLLLEPKLA 166
Query: 1013 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1052
+DEP SGLD A IV + + GR V+ H +
Sbjct: 167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 21/191 (10%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSITISGYPKNQETFA 923
+ GV PG LT L+G +G+GK+TL+ +LAG R G V + + G + A
Sbjct: 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR--A 74
Query: 924 RISGYCEQTDIHSPHVTVYESLVY------SAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
R EQ + +TV + + S W P + + EL L
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR--TELSHLAD 132
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
R+ +S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 133 -RD-------MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184
Query: 1038 DTGRTVVCTIH 1048
TG TVV +H
Sbjct: 185 ATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 33/198 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYV-SGSITISGYPKNQ---- 919
+ VS RPG + L+G +GAGKTTL +++ G + + G V I+G P ++
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 920 ---ETFARISGYCEQTDIHSPHVTVYE--------SLVYSAWLRLPPEVDSDTRKMF-VE 967
TF Q P +TV E L S L P +
Sbjct: 80 GIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR 131
Query: 968 EVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
E++E V L + + G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 132 ELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETE 186
Query: 1028 IVMRTVRNTVDT-GRTVV 1044
+ +R D G T++
Sbjct: 187 ELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 2e-14
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 62/203 (30%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L GVS + R G + AL+G +GAGK+TLM +L+G + SG I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDG---------- 61
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984
++ SP D+ R A +
Sbjct: 62 -----KEVSFASPR-------------------DA-------------------RRAGIA 78
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
+ V LS +R+ + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 79 M--VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 1045 CTIHQPSIDIFDAFDELLLMKRG 1067
H+ ++F+ D + +++ G
Sbjct: 137 FISHRLD-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-14
Identities = 81/303 (26%), Positives = 127/303 (41%), Gaps = 58/303 (19%)
Query: 785 ILSEEALAKKNACKTEEPVELS-------SGVQSSYGEVRSFNEADQNRKRGMILPFEPH 837
ILS ALA P++L+ + SY + M LP P
Sbjct: 283 ILSGRALA---------PIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLP-APQ 332
Query: 838 S-ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896
++ + + A P P + LKG+S A + G ++G SG+GK+TL +
Sbjct: 333 GALSVERLTAA---P--------PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARL 381
Query: 897 LAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953
L G SGS+ + G Q E R GY Q D+ T+ E++ R
Sbjct: 382 LVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDGTIAENIA-----RF 433
Query: 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLP---------GVSGLSTEQRKRLTIAVE 1004
E D E+V+E L + E ++ LP G + LS QR+R+ +A
Sbjct: 434 GEEADP-------EKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA 486
Query: 1005 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064
L +P ++ +DEP S LD+ A + + G TVV H+PS + D++L++
Sbjct: 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVL 544
Query: 1065 KRG 1067
+ G
Sbjct: 545 QDG 547
|
Length = 580 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-14
Identities = 68/276 (24%), Positives = 110/276 (39%), Gaps = 66/276 (23%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+L DV+ I+ +LLGP GK+TLL +AG SG + +G + + P+
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 228 -RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
R A + QN MTV E +AF + +GV E+ +R K
Sbjct: 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK-----AEIDKRVKE------------ 116
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML----RGISGGQRKRLTTGEMLVG 342
V K+LGL + +L +SGGQR+R+ LV
Sbjct: 117 -----------------VAKLLGL---------EHLLNRKPLQLSGGQRQRVALARALVR 150
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLR---QSIHILNGTAVISLLQPAPETYELFDDLIL 399
+ +DE + LD ++ +R + +H GT I + E L D +++
Sbjct: 151 KPKVFLLDEPLSNLD----AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV 206
Query: 400 LSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFL 435
++DG+I G + ++ P VA F+
Sbjct: 207 MNDGRIQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-14
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 29/213 (13%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFA 923
L+G+S + + G A++G SG+GK+TL ++ G SGS+ + G Q ETF
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFG 391
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV 983
+ GY Q D+ TV E++ R D E+++E +L + E ++
Sbjct: 392 KHIGYLPQ-DVELFPGTVAENIA-----RFGENADP-------EKIIEAAKLAGVHELIL 438
Query: 984 GLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
LP G + LS QR+R+ +A L +P ++ +DEP S LD + ++
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 1035 NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
G TVV H+PS + D++L+++ G
Sbjct: 499 ALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 65/257 (25%), Positives = 108/257 (42%), Gaps = 51/257 (19%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+L VS ++P + +LGP +GK+TLL AL+G+L D SG VT NG + + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 228 ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
R A + QN TV+E + G E + ++ +
Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ------------- 118
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML---- 340
+ A L G DY R +SGG+++R+ +L
Sbjct: 119 -ALAATDLSGLAGR---DY--------------------RTLSGGEQQRVQLARVLAQLW 154
Query: 341 --VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398
V R LF+DE ++ LD + + + RQ G AV+++L + D ++
Sbjct: 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIV 212
Query: 399 LLSDGQIVYQGPRENVL 415
LL G+++ G ++VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 62/251 (24%), Positives = 99/251 (39%), Gaps = 60/251 (23%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRT 229
L DVS ++P R LLGP +GK+TL L G+++ GH + P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 230 SAYI----SQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
A + Q L + +++VR+ L + A G LSR E A I
Sbjct: 73 LARLGVVFQQPTLDL-DLSVRQNLRYHAALHG----------LSRAEARARIAEL----- 116
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
L LGL AD V R ++GG R+R+ L+
Sbjct: 117 -------------------LARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPA 152
Query: 346 ALFMDEISTGLDSSTTYQIVNSLR-----QSIHILNGTAVISLLQPAPETYELFDDLILL 400
L +DE + GLD ++ I +R Q + +L T ++ ++ D L++L
Sbjct: 153 LLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 401 SDGQIVYQGPR 411
G+++ G
Sbjct: 206 HRGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 4e-14
Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 16/184 (8%)
Query: 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP-KNQETFARIS- 926
G+S G L+G +GAGK+T+ ++ G + +G IT+ G P + AR
Sbjct: 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARI 116
Query: 927 GYCEQTDIHSPHVTVYESL-VYSAWLRLPPEVDSDTRKMFVEEVM-ELVELNPIREALVG 984
G Q D TV E+L V+ + + TR+ +E V+ L+E + E+
Sbjct: 117 GVVPQFDNLDLEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-ESKAD 167
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++
Sbjct: 168 AR-VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTIL 226
Query: 1045 CTIH 1048
T H
Sbjct: 227 LTTH 230
|
Length = 340 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 4e-14
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 55/255 (21%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP--- 226
L +VS I+P ++G SGK+TLL L G G V +G + + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 227 QRTSAYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
+R Y+ Q+ L G T+R+ +A A P D +
Sbjct: 538 RRNIGYVPQDPRLFYG--TLRDNIALGA-------------------------PYADDEE 570
Query: 286 IMKAASLEGQEKNVVTDYV-LKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
I++AA L G VT++V GL D +G E R +SGGQR+ + L+
Sbjct: 571 ILRAAELAG-----VTEFVRRHPDGL----DMQIG-ERGRSLSGGQRQAVALARALLRDP 620
Query: 345 RALFMDEISTGLDSSTTYQIVNSLRQSIH---ILNGTAVISLLQPAPETYELFDDLILLS 401
L +DE ++ +D+ + + + L++ + ++ T SLL +L D +I++
Sbjct: 621 PILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-------DLVDRIIVMD 673
Query: 402 DGQIVYQGPRENVLE 416
+G+IV GP++ VLE
Sbjct: 674 NGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 20/205 (9%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L +S + G + L+G +GAGKTT + ++ G SG + G P + R
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD----SGEVLFDGKPLDIAARNR 71
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLR-LPPEVDSDTRKMFVEEVMELVELNPIREALV 983
I GY + P + V + LVY A L+ L E + R+ ++E +E +EL+
Sbjct: 72 I-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK-- 124
Query: 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1043
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+TV
Sbjct: 125 ---RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTV 181
Query: 1044 VCTIHQPSIDIFDAF-DELLLMKRG 1067
+ + HQ +++ + D +LL+ +G
Sbjct: 182 ILSTHQ--MELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 20/214 (9%)
Query: 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSIT-----ISGYPKNQE 920
LK VS G ++G +G+GK+ L++ +AG SG I I+ P +
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKR 71
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
Y Q PH+TVY+++ Y R + + + +V+E+ E+ I
Sbjct: 72 DI----SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIE------RKVLEIAEMLGIDH 121
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1040
L P LS +++R+ IA LV NP I+ +DEP S LD R + ++
Sbjct: 122 LLNRKPET--LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF 179
Query: 1041 RTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
V + + + D++ +M G+ I VG
Sbjct: 180 GVTVLHVTHDFEEAWALADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 6e-14
Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 47/206 (22%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGY-------PK 917
L GV G + A++G SG+GK+TL+ ++ G R G I I G +
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSEEE 79
Query: 918 NQETFARISGYCEQ-----TDIHSPHVTVYESLVYS--AWLRLPPEVDSDTRKMFVEEVM 970
E R+ G Q + + TV+E++ + +LP +
Sbjct: 80 LYEIRKRM-GVLFQQGALFSSL-----TVFENVAFPLREHTKLPES-----------LIR 122
Query: 971 ELVELNPIREALVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
ELV + LVGL G S LS RKR+ +A + +P ++F+DEPTSGLD
Sbjct: 123 ELVLMKL---ELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 1025 AAAIVMRTVRNTVDT-GRTVVCTIHQ 1049
+A ++ +R D G TV+ H
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 6e-14
Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 30/210 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L+ ++ + G A++G SG GK+TL+ ++AG + SG + + G P
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVTGPGPDI-- 74
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
GY Q D P +TV +++ L E+ ++ E EL+E LVGL
Sbjct: 75 GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLE-------LVGLA 121
Query: 987 GVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1040
G LS R+R+ IA L P ++ +DEP LDA + + +T
Sbjct: 122 GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR 181
Query: 1041 RTVVCTIHQPSIDIFDAF---DELLLMKRG 1067
+TV+ H D+ +A D ++++
Sbjct: 182 KTVLLVTH----DVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 6e-14
Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 21/159 (13%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
+ +S + L+G +GAGK+TL+ ++ G R T SG I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 925 ISGYCEQTDIHSPHVTVYESL-VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV 983
I E ++ ++T E+L V++ L LP D+R ++EV+ +V+L
Sbjct: 72 IGSLIESPPLYE-NLTARENLKVHTTLLGLP-----DSR---IDEVLNIVDLTNT----- 117
Query: 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
G S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 118 GKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-14
Identities = 66/251 (26%), Positives = 106/251 (42%), Gaps = 62/251 (24%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLM---- 894
I F+++ +A D LK VS G A++G SG+GK+T++
Sbjct: 1 IEFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48
Query: 895 ---DVLAGRKTGGYVSGSITISGYP---KNQETFARISGYCEQTDIHSPHVTVYESLVY- 947
DV SGSI I G ++ R G Q D + T+ ++ Y
Sbjct: 49 RFYDVS---------SGSILIDGQDIREVTLDSLRRAIGVVPQ-DTVLFNDTIGYNIRYG 98
Query: 948 --SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP-------GVSG--LSTEQR 996
A +D EEV+E + I + ++ P G G LS ++
Sbjct: 99 RPDA---------TD------EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEK 143
Query: 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFD 1056
+R+ IA ++ NP I+ +DE TS LD + +R V GRT + H+ S I +
Sbjct: 144 QRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR-DVSKGRTTIVIAHRLS-TIVN 201
Query: 1057 AFDELLLMKRG 1067
A D+++++K G
Sbjct: 202 A-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 7e-14
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 21/185 (11%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP-KNQETFA 923
L GVS G + AL+G +GAGKTTL+ + G SGSI G
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR----SGSIRFDGRDITGLPPHE 71
Query: 924 RIS---GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV-ELNPIR 979
R GY + P +TV E+L+ A+ R + + +E V EL L R
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKERR 126
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R D
Sbjct: 127 KQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 1040 GRTVV 1044
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 9e-14
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 32/219 (14%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ET 921
L GVS RPG + A++G +GAGK+TL+ L+G + SG +T++G P N E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEE 72
Query: 922 FARISGYCEQTDIHSPHVTVYESLVYSAW-LRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
AR Q + TV E + R E + D R + +
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDER--IAAQAL---------- 120
Query: 981 ALVGLPGVSG-----LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIV 1029
A L G++G LS +++R+ +A L V + +F+DEPTS LD
Sbjct: 121 AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180
Query: 1030 MRTVRNTVDTGRTVVCTIHQPSIDIFDAF-DELLLMKRG 1067
+R R G V+ +H +++ + D ++L+ +G
Sbjct: 181 LRLARQLAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 9e-14
Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 858 GIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI----- 912
G R + L ++ PG + L G SG+GKTTL+ ++ G ++ GS+ +
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQEL 69
Query: 913 SGYPKNQETFARIS-GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVME 971
G + + R + GY Q +T +++ + L L P + + ++E
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLE 127
Query: 972 LVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
V L + L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+
Sbjct: 128 AVGLG---DHLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
Query: 1032 TVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
++ + G T++ H I D D ++ M+ G
Sbjct: 183 LMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI- 381
LRG+S QRKRLT G L LF+DE ++GLDS Y IV L++ +G A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL--ADSGQAILC 163
Query: 382 SLLQPAPETYELFDDLILL-SDGQIVYQG 409
++ QP+ +E FD L+LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 20/222 (9%)
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETF 922
+ L V+ G L AL+G SG+GK+TL+ ++AG + SG I ++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 923 A-RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA 981
R G+ Q H+TV +++ + +R P+ R VEE++ELV+L + +
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDR 126
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1041
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D
Sbjct: 127 ---YP--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 1042 -TVVCTIHQPSIDIFDAFDELLLMKRG-------GEEIYVGP 1075
T V H + + D +++M G +E+Y P
Sbjct: 182 VTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 26/223 (11%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA-RI 925
L VS G L AL+G SG+GKTTL+ ++AG + SG+I G R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD--SGTILFGGEDATDVPVQERN 75
Query: 926 SGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL 985
G+ Q H+TV++++ + LR+ P + +V EL++ LV L
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLK-------LVQL 126
Query: 986 PGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-T 1039
+ + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 127 DWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186
Query: 1040 GRTVVCTIHQPSIDIFDAFDELLLMKRG-------GEEIYVGP 1075
T V H + + D +++M +G +E+Y P
Sbjct: 187 HVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSIT-----ISGYPKNQET 921
LK V+ G + A++G SGAGK+TL+ L G SG I I+ +
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG--LVDPTSGEILFNGVQITKLKGKELR 77
Query: 922 FARIS-GYCEQTDIHSPHVTVYE-----SLVYSAWLR----LPPEVDSDTRKMFVEEVME 971
R G Q P ++V E L Y++ R L + D + ++
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKED---KAQALDA--- 131
Query: 972 LVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
L + + +A S LS Q++R+ IA LV P II DEP + LD +A VM
Sbjct: 132 LERVGILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 1032 TVR--NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075
++ N D G TV+ +HQ +D+ + + ++ + G ++ GP
Sbjct: 189 ILKDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 51/246 (20%)
Query: 839 ITFDDI--RYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896
ITF+ + RY D P L +S +PG + ++G SG+GK+TL +
Sbjct: 1 ITFEHVRFRYKPDGP-------------VILDNISLRIKPGEVVGIVGRSGSGKSTLTKL 47
Query: 897 LAGRKTGGYV--SGSITISGYP---KNQETFARISGYCEQTDIHSPHVTVYESLVYSAWL 951
+ YV +G + + G+ + R G Q E+++++ +
Sbjct: 48 IQRF----YVPENGRVLVDGHDLALADPAWLRRQVGVVLQ-----------ENVLFNRSI 92
Query: 952 RLPPEVDSDTRKMFVEEVME----------LVELNPIREALVGLPGVSGLSTEQRKRLTI 1001
R + M +E V+E + EL + +VG G GLS QR+R+ I
Sbjct: 93 R--DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAI 149
Query: 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061
A L+ NP I+ DE TS LD + +MR + + GRTV+ H+ S + +A D +
Sbjct: 150 ARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-VKNA-DRI 206
Query: 1062 LLMKRG 1067
++M++G
Sbjct: 207 IVMEKG 212
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 16/192 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG-----YPKNQET 921
L VS R G L G SGAGKTTL+ +L G T G + I+G Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLP 75
Query: 922 FARIS-GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
R G Q P TVYE++ +R E + R V + V L +
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEHKAD 132
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1040
A P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 133 AF---PEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1041 RTVVCTIHQPSI 1052
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 28/214 (13%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET---FA 923
L +S + G +TAL+G +G GK+TL+ A T SG++ + P + + A
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQLA 75
Query: 924 RISGYCEQTDIHSPHVTVYESLVY------SAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
R Q + +TV E + Y S W RL S V + ME +N
Sbjct: 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNARVNQAMEQTRINH 130
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
+ + + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 131 LADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 1038 DTGRTVVCTIHQPSIDIFDA---FDELLLMKRGG 1068
G+TVV +H D+ A D L+++ G
Sbjct: 186 TQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGY-P-KNQE 920
E LKG+S G + +G +GAGKTT + +L+G + T SG + ++G P K ++
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRK 90
Query: 921 TF-ARISGYCEQTDIHSPHVTVYESL-VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
F RI Q + V +S + +A LPP F + + EL EL +
Sbjct: 91 KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA-------RFKKRLDELSELLDL 143
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1037
E L+ P V LS QR R IA L+ P I+F+DEPT GLD A + ++
Sbjct: 144 -EELLDTP-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 1038 DTGRTVVCTIH 1048
+ G TV+ T H
Sbjct: 202 ERGTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 24/200 (12%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP---KNQE 920
L LKGV + G A++G SG+GK+TL+ VLAG SG + + G P +++
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKLDED 80
Query: 921 TFARIS----GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN 976
A + G+ Q+ P++T E++ LP E+ ++ L+E
Sbjct: 81 ARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRAGAKALLEAV 134
Query: 977 PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRT 1032
+ + L P LS +++R+ +A P ++F DEPT LD + A ++
Sbjct: 135 GLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL 192
Query: 1033 VRNTVDTGRTVVCTIHQPSI 1052
R + G T+V H P +
Sbjct: 193 NR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 57/250 (22%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE---- 223
+L DVS +KP ++GP +GK+TLL A+ G L SG + G +E+
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKR 69
Query: 224 --FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
+VPQR S D I +VR+ + G+ + + LS+ +KA
Sbjct: 70 IGYVPQRRSI---DRDFPI---SVRDVVLM-----GLYGHKGLFRRLSKADKAK------ 112
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
D L+ +GL AD +G+ +SGGQ++R+ LV
Sbjct: 113 -------------------VDEALERVGLSELADRQIGE-----LSGGQQQRVLLARALV 148
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISL--LQPAPETYELFDDLIL 399
L +DE G+D T I LR+ + T ++ L E FD ++L
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLL 204
Query: 400 LSDGQIVYQG 409
L + +V G
Sbjct: 205 L-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 3e-13
Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 53/256 (20%)
Query: 158 HVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217
+ + L VS I+ ++GP SGK+T LL + G L D SG V +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKST-LLNILGGL--DRPTSGEVRVD 64
Query: 218 GHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI 277
G + + + +A+ R + F V + +L +L+ E N+
Sbjct: 65 GTDISKLSEKELAAF------------RRRHIGF------VFQSFNLLPDLTALE---NV 103
Query: 278 KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG 337
+ L + A + +E+ + +L+ +GL + E+ SGGQ++R
Sbjct: 104 E------LPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS-EL----SGGQQQR---- 148
Query: 338 EMLVGPARAL-------FMDEISTG-LDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE 389
V ARAL DE TG LDS T +++ LR+ ++ GT ++ ++ PE
Sbjct: 149 ---VAIARALANDPKIILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPE 202
Query: 390 TYELFDDLILLSDGQI 405
E D +I L DG+I
Sbjct: 203 LAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 3e-13
Identities = 64/258 (24%), Positives = 97/258 (37%), Gaps = 62/258 (24%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH------GM 221
T+L V ++ + ++GP SGK+TLL + G L D SG V +G
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 222 EEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
E + +R + Q+ +TV E +AF R + L E RE
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR------EHTRLSEEEIREIVL------ 118
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
K L+ +GL D + +SGG +KR V
Sbjct: 119 -----EK----------------LEAVGLRGAEDLYPAE-----LSGGMKKR-------V 145
Query: 342 GPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF 394
ARAL DE + GLD + I + +R S+ G I + + +
Sbjct: 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIR-SLKKELGLTSIMVTHDLDTAFAIA 204
Query: 395 DDLILLSDGQIVYQGPRE 412
D + +L DG+IV +G E
Sbjct: 205 DRIAVLYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 53/247 (21%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-- 227
L +VS I+ ++G SGK+TLL LAG SG V +G + + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 228 -RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
R Y+ Q D+ + T+R+ + A P D + I
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA-------------------------PLADDERI 110
Query: 287 MKAASLEGQEKNVVTDYVLKI-LGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
++AA L G VTD+V K GL D +G E RG+SGGQR+ + L+
Sbjct: 111 LRAAELAG-----VTDFVNKHPNGL----DLQIG-ERGRGLSGGQRQAVALARALLNDPP 160
Query: 346 ALFMDEISTGLDSSTTYQIVNSLRQSIH---ILNGTAVISLLQPAPETYELFDDLILLSD 402
L +DE ++ +D ++ ++ LRQ + ++ T SLL L D +I++
Sbjct: 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD-------LVDRIIVMDS 213
Query: 403 GQIVYQG 409
G+IV G
Sbjct: 214 GRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP-KNQETFARI 925
L GVS + G L+G SG GKTTL+ ++AG +T SG I + G N R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHKRP 73
Query: 926 SGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL 985
Q PH+TV+E++ + LRL ++ K V E ++LV+L
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYANRKP-- 128
Query: 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 ---SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 5e-13
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 12/204 (5%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP-KNQETFARI 925
L +S G L AL+G SG GKTTL+ +AG ++G I I+ + R
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80
Query: 926 SGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL 985
Q PH+ V +++ + + P+ D R V + ++LV L +A L
Sbjct: 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLG---DAAAHL 134
Query: 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTV 1043
P + LS ++R+ IA + P ++ +DEP S LDA A + + + T+
Sbjct: 135 P--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI 192
Query: 1044 VCTIHQPSIDIFDAFDELLLMKRG 1067
+C H D D+ +MK G
Sbjct: 193 LCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 6e-13
Identities = 68/252 (26%), Positives = 107/252 (42%), Gaps = 47/252 (18%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ- 227
+L D+S I P ++G SGK+TLL L G GR+ +G + +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 228 --RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
R Y+ Q+ + ++RE +A P+ +
Sbjct: 545 LRRQVGYVLQDP-FLFSGSIRENIALGN-------------------------PEATDEE 578
Query: 286 IMKAASLEGQEKNVVTDYVLKI-LGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
I++AA L G +++ + +G DT VG E +SGGQR+RL L+
Sbjct: 579 IIEAAQLAG-----AHEFIENLPMGY----DTPVG-EGGANLSGGQRQRLALARALLSKP 628
Query: 345 RALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404
+ L +DE ++ LD T I+ +L Q IL G VI ++ T D +I+L G+
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGK 684
Query: 405 IVYQGPRENVLE 416
IV QG E +L
Sbjct: 685 IVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 6e-13
Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 39/247 (15%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR 228
IL ++S IKP + ++G SGK+TL KL + +VP+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRF---------------YVPEN 56
Query: 229 TSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMK 288
+ +DL + + A+ R GV + VL S R+ A P ++ +++
Sbjct: 57 GRVLVDGHDLALAD------PAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIE 110
Query: 289 AASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348
AA L G D++ + L DT+VG E G+SGGQR+R+ L+ R L
Sbjct: 111 AAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRILI 161
Query: 349 MDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQ 408
DE ++ LD + + I+ ++ I G VI ++ T + D +I++ G+IV Q
Sbjct: 162 FDEATSALDYESEHAIMRNMHD---ICAGRTVI-IIAHRLSTVKNADRIIVMEKGRIVEQ 217
Query: 409 GPRENVL 415
G + +L
Sbjct: 218 GSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 6e-13
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-VSGSITISG-----YPKNQE 920
L V+ G + LMG SG GK+TL+ + G G + +G + ++ P Q
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ- 76
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
R G Q + PH++V ++L+++ LP + + R+ +E L+
Sbjct: 77 ---RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLD---G 126
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
A P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 127 AFHQDP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 7e-13
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 876 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YVSGSITISGYPKNQ-ETFARISGYC 929
PG +TA+ G SG+GKTTL+ ++AG R G ++G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 930 EQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989
Q PH++V +L Y R++ E V+EL+ + + L LPG
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHL---LGRLPG-- 130
Query: 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-13
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 13/208 (6%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YVSGSITISGYPKNQETF 922
L VS + + G L+G SG+GK+TL + G + T G G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 923 ARISGYCEQTDIHS--PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
+ Q + S P +T+ E + + RK V ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA-RKEAVLLLLVGVGLPEEVL 139
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1039
P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++ +
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL 195
Query: 1040 GRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
G T++ H + A D + +M G
Sbjct: 196 GLTLLFITHDLGVVAKIA-DRVAVMYAG 222
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 8e-13
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYV---SGSITISGYPKNQETFARISGYC---E 930
G + AL+GV+G+GK+TL L G +V SG I+I G P Q + Y E
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMG-----FVRLASGKISILGQPTRQALQKNLVAYVPQSE 87
Query: 931 QTDIHSPHVTVYESLV------YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984
+ D P + E +V + WLR + D + V + V++ R +G
Sbjct: 88 EVDWSFP--VLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEFRHRQIG 141
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++
Sbjct: 142 -----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTML 196
Query: 1045 CTIH 1048
+ H
Sbjct: 197 VSTH 200
|
Length = 272 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 9e-13
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 42/206 (20%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP- 226
L D++ IK +LT L+G +GK+TLL L G L G + NG + + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 227 --QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
++ +++SQN ++ T+RE + + +PD +
Sbjct: 392 AWRKQISWVSQNP-YLFAGTIRENILLA-------------------------RPDASDE 425
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
I+ A G + ++V K GL DT++G+ G+SGGQ +RL L+ PA
Sbjct: 426 EIIAALDQAG-----LLEFVPKPDGL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 345 RALFMDEISTGLDSSTTYQIVNSLRQ 370
L +DE + LD+ T I+ +L++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQE 501
|
Length = 559 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 9e-13
Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 25/167 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP----KNQE 920
L VS G ++G SG+GK+TL +LAG + + SGSI + G P K +
Sbjct: 23 LNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRAK 78
Query: 921 TFARISGYCEQTDIHS---PHVTVYESLVYSAWLRLPPEVDS-DTRKMFVEEVMELVELN 976
F R Q D +S P TV L P + + E+++ V L
Sbjct: 79 AFYRPVQMVFQ-DPYSSLNPRRTVGRIL------SEPLRPHGLSKSQQRIAELLDQVGLP 131
Query: 977 PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
P L P LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 132 P--SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-13
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 891 TTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS----GYCEQTDIHSPHVTVYESLV 946
+TL+ ++ G SG+I + G + ++ G Q P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 947 YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV 1006
+ EE +E V L + V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPD----FLDREPVGTLSGGQKQRVAIARALL 106
Query: 1007 ANPSIIFMDEPTS 1019
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 9e-13
Identities = 65/242 (26%), Positives = 103/242 (42%), Gaps = 41/242 (16%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
+ F ++ + P D L+ +S G AL+G SG+GK+TL++++
Sbjct: 1 VEFKNVTF-----------RYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP 49
Query: 899 GRKTGGYVSGSITISGYPKNQETFA---RISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955
+ SG I I G+ T A R G Q D+ + TV E++ Y P
Sbjct: 50 --RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----P 101
Query: 956 EVDSDTRKMFVEEVMELVELNPIREALVGLP-------GVSG--LSTEQRKRLTIAVELV 1006
EEV E E ++ LP G G LS QR+R+ IA L+
Sbjct: 102 GATR-------EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154
Query: 1007 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066
+P I+ +DE TS LD + +V + + RT H+ S I +A D +++++
Sbjct: 155 KDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLED 211
Query: 1067 GG 1068
G
Sbjct: 212 GK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 46/235 (19%)
Query: 179 PQRLTLLLGPPSSGKTTLLLALAGKLGKD---LKFSGRVTYNGHGMEEFVPQ-RTSAYIS 234
+ +T + G +GK+TLL +AG D + +G V ++ PQ R +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 235 QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEG 294
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 295 QEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEIST 354
L +LGL+ + +SGG+++R+ L L +DE +
Sbjct: 116 ----------LDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 355 GLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
LD + Q++ L+Q LN VI + E L D ++++ DG++ Y G
Sbjct: 161 ALDRALRLQLLPELKQIKKNLNIP-VIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 67/272 (24%), Positives = 110/272 (40%), Gaps = 52/272 (19%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
L DV+ + L LLGP SGK+TLL +AG D SGR+ NG +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHAR 70
Query: 228 -RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
R ++ Q+ +TVR+ +AF E+ + KA
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFGL-------------EIRKHPKA------------ 105
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
+ + +L+++ LE +GD +SGGQR+R+ L +
Sbjct: 106 ---------KIKARVEELLELVQLE-----GLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406
L +DE LD+ ++ + LR+ ++ T V + E E+ D ++++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 407 YQGPRENVLEFFERMGFKCPERKGVADFLQEV 438
G + V + P V FL EV
Sbjct: 211 QIGSPDEV--------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 64/264 (24%), Positives = 101/264 (38%), Gaps = 63/264 (23%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
L DVS I P L+GP +GK+TLL L G + SG V +G + + +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 228 ------RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
R I Q I ++V E + G R + L +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLS-----GRLGRRSTWRSLFGLFPKEEKQ--- 123
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
+A + L+ +GL A D++ SGGQ++R V
Sbjct: 124 ------RALAA------------LERVGLLDKAYQRA-DQL----SGGQQQR-------V 153
Query: 342 GPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL- 393
ARAL DE LD +++ Q+++ L++ T ++SL Q +L
Sbjct: 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-----DLA 208
Query: 394 ---FDDLILLSDGQIVYQGPRENV 414
D ++ L DG+IV+ GP +
Sbjct: 209 REYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 27/215 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYVSGSITI-SGYPKNQE-- 920
L G+ +PG + A++G SG+GKTTL +++L + G G ITI + +Q+
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKG 78
Query: 921 ---TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
+ G+ Q PH TV E+++ P V + ++ EL+
Sbjct: 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELL---- 129
Query: 978 IREALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1032
A VGL G LS Q++R+ IA L P +I DEPTS LD V+ T
Sbjct: 130 ---AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+R RT+V H+ S D D + M +G
Sbjct: 187 IRQLAQEKRTMVIVTHEMSF-ARDVADRAIFMDQG 220
|
Length = 250 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 2e-12
Identities = 54/171 (31%), Positives = 94/171 (54%), Gaps = 16/171 (9%)
Query: 882 LMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK-NQETFARIS-GYCEQTDIHSPHV 939
L+G +GAGK+T+ +L G + G IT+ G P ++ AR++ G Q D P
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92
Query: 940 TVYESL-VYSAWLRLPPEVDSDTRKMFVEEVM-ELVELNPIREALVGLPGVSGLSTEQRK 997
TV E+L V+ + + TR+ +E V+ L+E + E+ + V+ LS ++
Sbjct: 93 TVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-ESKADVR-VALLSGGMKR 142
Query: 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H
Sbjct: 143 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 2e-12
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 39/203 (19%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG----YPKNQ 919
E LKG+S + G + ++G SG+GK+TL+ L G + SGSIT+ G K+
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDI 72
Query: 920 ETFARISGYCEQTDIHS----PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEV----ME 971
R G Q PH+TV E++ L P +K+ E +E
Sbjct: 73 LKLRRKVGMVFQ----QFNLFPHLTVLENVT------LAPVK---VKKLSKAEAREKALE 119
Query: 972 LVELNPIREALVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
L+E VGL + LS Q++R+ IA L +P ++ DEPTS LD
Sbjct: 120 LLEK-------VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELV 172
Query: 1027 AIVMRTVRNTVDTGRTVVCTIHQ 1049
V+ +++ + G T++ H+
Sbjct: 173 GEVLDVMKDLAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-12
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 40/220 (18%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP----KNQETF 922
L GV + R G L L+G +GAGKTTL+ + G T +G++ ++G +
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAAS 76
Query: 923 ARISGYCEQTDI-------------HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEV 969
R++ + T + +PH + R ++D VE
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRS-----------RFDTWTETDRAA--VERA 123
Query: 970 MELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
ME + P V+ LS +R+R+ +A L ++ +DEPT+ LD
Sbjct: 124 MERTGV----AQFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRT 178
Query: 1030 MRTVRNTVDTGRTVVCTIHQPSIDIFDAF-DELLLMKRGG 1068
+ VR VD G+T V IH +D+ + DEL+L+ G
Sbjct: 179 LELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
Query: 870 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYVSGSITISGYPKNQETFARIS 926
VS G + L+G +GAGKTT ++ G R G + IS P + I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
GY Q ++VY++L+ A L++ ++ ++ R+ E+ME + +R+++
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1046
G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 135 GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 1047 IH 1048
H
Sbjct: 194 DH 195
|
Length = 241 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 31/200 (15%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG--YPKNQETFAR 924
L ++ G + A++G SG+GK+TL++++ + + SG + ++G P A
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE--KFDSGQVYLNGQETPPLNSKKAS 71
Query: 925 IS-----GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
GY Q + TV E+L L + ++K E E +
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENL------DLGLKYKKLSKK----EKREK-----KK 116
Query: 980 EAL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1032
EAL VGL + LS +++R+ +A ++ P +I DEPT LD + V+
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 1033 VRNTVDTGRTVVCTIHQPSI 1052
+ D G+T++ H P +
Sbjct: 177 LLELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 16/191 (8%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQ 919
+G+S G + G +G GKTTL+ +LAG R G V + T + +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 920 ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
+ R Y P ++ E+L + W + +E+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+ LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1040 GRTVVCTIHQP 1050
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 31/214 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY---PKNQETFA 923
L VS G +T+++G +GAGK+TL+ + R SG ITI G + A
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKELA 74
Query: 924 RISGYCEQTDIHSPHVTVYESLV------YSAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
+ +Q + + +TV LV YS RL E D R + E +E + L
Sbjct: 75 KKLSILKQENHINSRLTV-RDLVGFGRFPYSQG-RLTKE---DRRI--INEAIEYLHLED 127
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
+ + + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 128 LSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 1038 DT-GRTVVCTIHQPSIDIFDA---FDELLLMKRG 1067
D G+T+V +H DI A D ++ +K G
Sbjct: 183 DELGKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L+ VS G L ++G SG GKTTL++++AG T GSI ++G R
Sbjct: 21 LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER-- 76
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
G Q + P + V +++ + LR ++ R+ +++ ALVGL
Sbjct: 77 GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQML----------ALVGLE 123
Query: 987 G-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
G + LS R+R+ IA L P ++ +DEP LDA
Sbjct: 124 GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 4e-12
Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 18/204 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
+ +S PG + L+G +GAGKTT ++ G G IT +G P +QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 927 GYC-EQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL--NPIREALV 983
GY E+ ++ P +TV + L Y A L+ P+ + + E +E+V I+E
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKE--- 130
Query: 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1043
LS ++++ ++ P ++ +DEP SGLD ++ + + G T+
Sbjct: 131 -------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 1044 VCTIHQPSIDIFDAFDELLLMKRG 1067
+ + H+ + + D LL++K+G
Sbjct: 184 IFSSHRME-HVEELCDRLLMLKKG 206
|
Length = 300 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 4e-12
Identities = 57/223 (25%), Positives = 91/223 (40%), Gaps = 45/223 (20%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFA 923
L VS RPG + A++G +GAGK+TL+ L+G + SG + ++G P A
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLNGRPLADWSPAELA 75
Query: 924 RISGYCEQTDIHSPHV----TVYE--SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
R Q + TV E ++ + E D+ V + V+L
Sbjct: 76 RRRAVLPQ----HSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQVDLAH 126
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMR 1031
+ P +SG EQ +R+ +A L P + +DEPTS LD V+R
Sbjct: 127 LAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR 181
Query: 1032 TVRN-TVDTGRTVVCTIHQPSIDIFD-----AF-DELLLMKRG 1067
R + G V+ +H D + D ++L+ +G
Sbjct: 182 LARQLAHERGLAVIVVLH-------DLNLAARYADRIVLLHQG 217
|
Length = 258 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 4e-12
Identities = 60/212 (28%), Positives = 92/212 (43%), Gaps = 27/212 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQE---T 921
+ V+ G L+G SG+GKTT + ++ T SG I I G +
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT----SGEILIDGEDISDLDPVE 72
Query: 922 FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA 981
R GY Q PH+TV E++ L + R +E+++LV L+P E
Sbjct: 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR---ADELLDLVGLDP-SEY 128
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNTVD 1038
P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 129 ADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE-- 184
Query: 1039 TGRTVVCTIHQPSIDIFDAF---DELLLMKRG 1067
G+T+V H DI +A D + +M G
Sbjct: 185 LGKTIVFVTH----DIDEALKLADRIAVMDAG 212
|
Length = 309 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 28/220 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYVS------GSITISGYPKN 918
L +S PG A++G +GAGKTTL+ +L G + G V+ G
Sbjct: 47 LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGET-----I 101
Query: 919 QETFARISGYC--EQTDIHSPHVTVYESLVYSAW---LRLPPEVDSDTRKMFVEEVMELV 973
E RI G E + TV + +V S + + + E + + ++EL+
Sbjct: 102 FELRKRI-GLVSSELHERFRVRETVRD-VVLSGFFASIGIYQEDLTAEDLAAAQWLLELL 159
Query: 974 ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1033
+ L P LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 160 GA----KHLADRP-FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRL 214
Query: 1034 R--NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071
++ H +I F LL+K G
Sbjct: 215 EELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253
|
Length = 257 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-12
Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 24/239 (10%)
Query: 832 LPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKT 891
L SI F+++ ++ + LK +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 892 TLMDVLAGRKTGGYVSGSITISGYPKNQETFA---RISGYCEQTDIHSPHVTVYESLVYS 948
TL+ +L SG I I G + + G Q D T+ E++
Sbjct: 370 TLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQ-DPLLFSGTIRENIALG 426
Query: 949 AWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVAN 1008
E++ + E + L + +VG GV LS QR+RL IA L+ N
Sbjct: 427 RPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV-NLSGGQRQRLAIARALLRN 483
Query: 1009 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
P I+ +DE TS LD A++ ++ + GRT + H+ S D ++++ G
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLSTIKN--ADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 75/308 (24%), Positives = 115/308 (37%), Gaps = 74/308 (24%)
Query: 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF 224
KP + L DVS I L ++LGP GKTTLL +AG + G + NG +E
Sbjct: 16 KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG- 71
Query: 225 VPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
P + QN+ + + V + +AF + +G+ RRE A
Sbjct: 72 -PGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREIAHQ-------- 115
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
+L ++GLE + +SGG R+R+ L
Sbjct: 116 -------------------MLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEP 151
Query: 345 RALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS--D 402
+ L +DE LD+ T Q+ L + G V+ + E L L++LS
Sbjct: 152 QLLLLDEPFGALDALTREQM-QELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGP 210
Query: 403 GQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKE 462
G++V + P L+F R P R A K +P F+ +E
Sbjct: 211 GRVVERLP----LDFARRYAAGEPSR--------------------AIKSDP-EFIAMRE 245
Query: 463 --FSEVFQ 468
EVF+
Sbjct: 246 EVLDEVFE 253
|
Length = 259 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 7e-12
Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP--KNQETFARISGYCEQT 932
RPG L+GV+GAGKTT +L G T SG T++G N + GYC Q
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQF 2020
Query: 933 DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEV----MELVELNPIREALVGLPGV 988
D +T E L A LR P + +E+V ++ + L+ + L G
Sbjct: 2021 DAIDDLLTGREHLYLYARLRGVPAEE-------IEKVANWSIQSLGLSLYADRLAGT--- 2070
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-12
Identities = 66/209 (31%), Positives = 99/209 (47%), Gaps = 20/209 (9%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN-QETFARI 925
L +S R G + ALMG +GAGK+TL+ +L+G +GSI I G T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 926 -SG----YCEQTDIH-SPHVTVYESLVYSAWL-RLPPEVDSDTRKMFVEEVMELVELNPI 978
+G Y E +H P +TV E+L +L +LP + R++ E E +L +
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEARE--QLEHL 128
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038
+ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 1039 TGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
GR ++ H+ +IF D + + K G
Sbjct: 189 EGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 23/165 (13%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YVSGSITISGYPKNQET- 921
L ++ G L+G SG GKTT + ++AG T G Y+ G PK+++
Sbjct: 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA 75
Query: 922 --FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
F + Y PH+TVY+++ + LR P+ + D R V EV EL++ I
Sbjct: 76 MVFQNYALY--------PHMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQ---IE 121
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
L P LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 122 HLLDRKP--KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YVSGSITISGYPKNQETF 922
L +S + PG L L+G +GAGKTTLMDV+ G R G G ++ P+++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 923 ARISGYCE--QTDIHSPHVTVYESLVY------SAWLRLPPEVDSDTRKMFVEEVMELVE 974
AR G Q ++TV E+L S + L + ++ R+ ++E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 975 LNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021
L R+ L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 31/199 (15%)
Query: 863 RLEF--LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKN 918
R E +S G + G +GAGKTTL+ +LAG R G V
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY--WQGEPIQNV 69
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
+E++ + Y +T E+L + W R ++ T I
Sbjct: 70 RESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----------------I 111
Query: 979 REAL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
EAL VGL G V LS Q++R+ +A ++ + +DEP + LD A++
Sbjct: 112 WEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTA 171
Query: 1032 TVRNTVDTGRTVVCTIHQP 1050
+ G V+ T HQP
Sbjct: 172 LMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 14/186 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSITISGYPKNQETFA 923
+ GVS + + G + L+G +GAGKTT ++ G + G + I+ P ++ A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 924 RIS-GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
R+ GY Q +TV E++ A L + + R+ +EE++E + +R++
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENI--LAVLEIR-GLSKKEREEKLEELLEEFHITHLRKSK 130
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042
S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 131 A-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 1043 VVCTIH 1048
V+ T H
Sbjct: 186 VLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 36/227 (15%)
Query: 876 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGY-P-KNQETFARISGYC-- 929
G + +G +GAGK+T + +L G T G V ++G P + +E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLVMG 104
Query: 930 --EQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPG 987
Q P +SL L+L E+ D ++ + E+++L + P
Sbjct: 105 QKLQLWWDLP---ALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGF----LKWP- 153
Query: 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCT 1046
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ + TV+ T
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT 213
Query: 1047 IHQPSIDIFDAFDEL---LLMKRGGEEIYVGPLGRHCSQLIKYFEGI 1090
H IFD L +L+ G+ ++ G L +QL + F
Sbjct: 214 TH-----IFDDIATLCDRVLLIDQGQLVFDGTL----AQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 20/190 (10%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISG-----YPKNQ 919
L+ VS G L G SGAGK+TL+ ++ G R T G I ++G +
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT----RGKILVNGHDLSRLKGRE 73
Query: 920 ETFARIS-GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
F R G Q P TVYE++ LP V + V E+++L +
Sbjct: 74 IPFLRRQIGVVFQDFRLLPDRTVYENVA------LPLRVIGKPPREIRRRVSEVLDLVGL 127
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038
+ LP S LS +++R+ IA +V P+++ DEPT LD + +MR
Sbjct: 128 KHKARALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR 185
Query: 1039 TGRTVVCTIH 1048
G TV+ H
Sbjct: 186 LGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 48/227 (21%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
I F ++ + ++ LKG+S PG AL+G SG GK+T++ +L
Sbjct: 1 IEFKNVSFRYPSRPDVPI----------LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE 50
Query: 899 GRKTGGY--VSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHV---TVYESLVYSAW 950
R Y SG I + G G Q P + T+ E++ Y
Sbjct: 51 -RF---YDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQ----EPVLFDGTIAENIRYGK- 101
Query: 951 LRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP-------GVSG--LSTEQRKRLTI 1001
P D EEV E + I + ++ LP G G LS Q++R+ I
Sbjct: 102 ---PDATD--------EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAI 150
Query: 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
A L+ NP I+ +DE TS LDA + +V + + GRT + H
Sbjct: 151 ARALLRNPKILLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 16/220 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGS-ITISGYPKNQETFARI 925
L V G + AL+G SG+GK+TL+ L+G TG +GS I + G +E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRL 77
Query: 926 SGYCEQTDIHSPHV----------TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
+ ++ ++ ++ +V E+++ A P + ++ L L
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
+ VS LS Q++R+ IA L+ +I DEP + LD +A IVM T+R+
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 1036 TVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074
G TVV T+HQ +D + E ++ R G Y G
Sbjct: 198 INQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 47/217 (21%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR 924
E LKGV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 925 ISGYCEQTDIHSPHVTVYESL---VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA 981
DI + E ++ A+ PPE+ F+ V E
Sbjct: 64 -------EDI--TDLPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE---------- 103
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1041
G S ++KR I L+ P + +DEP SGLD A +V + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1042 TVVCTIHQPSIDIFDAFDELLLM------KRGGEEIY 1072
+V+ H + + D + ++ K G +E+
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 69/250 (27%), Positives = 102/250 (40%), Gaps = 50/250 (20%)
Query: 164 KKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM-- 221
KK + + VS +KP +T LLGP +GKTT L LAG L D +G T +G +
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 222 EEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
E +R ++S + +T RE L + A G
Sbjct: 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG------------------------ 107
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
L+G E + + LG+E D VG G S G R+++ LV
Sbjct: 108 ----------LKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALV 152
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILN--GTAVISLLQPAPETYELFDDLIL 399
L +DE +TGLD T +LR+ I L G ++ E L D +++
Sbjct: 153 HDPPVLLLDEPTTGLDVMAT----RALREFIRQLRALGKCILFSTHIMQEVERLCDRVVV 208
Query: 400 LSDGQIVYQG 409
L G++VY+G
Sbjct: 209 LHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 69/251 (27%), Positives = 100/251 (39%), Gaps = 48/251 (19%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-R 228
L DVS I L LLGP SGKTTLL +AG D SG + + G + Q R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQER 74
Query: 229 TSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMK 288
++ Q+ MTV + +AF R V PR E E R K +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKVHEL----------- 120
Query: 289 AASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348
LK++ L+ AD +SGGQR+R+ L + L
Sbjct: 121 ----------------LKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 349 MDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI--- 405
+DE LD+ ++ LR+ L+ T V + E E+ D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 406 -----VYQGPR 411
VY P
Sbjct: 219 GTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 49/254 (19%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLK-FSGRVTYNGHGMEEFVP 226
IL+D+S + ++T L+GP GK+TLL A + L SG V +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA----RLLTPQSGTVFLGDKPISMLSS 71
Query: 227 QRTSAYIS---QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
++ + ++ Q+ L +TVRE +A+ G P + LS + A
Sbjct: 72 RQLARRLALLPQHHLTPEGITVRELVAY-----GRSPWLSLWGRLSAEDNA--------- 117
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+ +A ++ + AD + D +SGGQR+R +L
Sbjct: 118 -RVNQA---------------MEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQD 156
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILN--GTAVISLLQPAPETYELFDDLILLS 401
+ +DE +T LD + +++ +R+ LN G V+++L + D L++L+
Sbjct: 157 TPVVLLDEPTTYLDINHQVELMRLMRE----LNTQGKTVVTVLHDLNQASRYCDHLVVLA 212
Query: 402 DGQIVYQGPRENVL 415
+G ++ QG E V+
Sbjct: 213 NGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 15/196 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYVSGSITISG---YPKNQE 920
+K V+ + G + AL+G SG GKTT + + + G V+G I + G Y +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 921 TFA--RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NP 977
A R G Q P ++V++++V A L+L D D E + L +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDE 137
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MRTVRN 1035
+++ L P +GLS Q++RL IA L P I+ MDEPTS LD + A + + T
Sbjct: 138 VKDRL-KTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK 195
Query: 1036 TVDTGRTVVCTIHQPS 1051
V T V +HQ +
Sbjct: 196 KVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-11
Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 40/209 (19%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV--SGSITISGYPKNQETFARISG---YC 929
+PG AL+G SG+GK+T+ ++AG Y SG I G P+ + ++
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGL----YQPWSGEILFDGIPREEIPREVLANSVAMV 558
Query: 930 EQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV- 988
+Q DI TV ++L + W P+ +++ + I + + PG
Sbjct: 559 DQ-DIFLFEGTVRDNL--TLWDPTIPD----------ADLVRACKDAAIHDVITSRPGGY 605
Query: 989 --------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1040
+ LS QR+RL IA LV NPSI+ +DE TS LD I+ +R
Sbjct: 606 DAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----- 660
Query: 1041 RTVVCTI--HQPSIDIFDAFDELLLMKRG 1067
R C I H+ S I D DE+++++RG
Sbjct: 661 RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 22/215 (10%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP----- 916
D LKG++ + G +TA++G +GAGK+TL L G SG I G P
Sbjct: 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSR 74
Query: 917 KNQETFARISGYCEQTDIHSP-HVTVYESLVYSAW-LRLPPEVDSDTRKMFVEEVMELVE 974
K G Q + +VY+ + + A L+LP D + V+ ++
Sbjct: 75 KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP----EDEVRKRVDNALKRTG 130
Query: 975 LNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
+ +++ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 131 IEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLV 185
Query: 1035 NTV-DTGRTVVCTIHQPSIDIFDAF-DELLLMKRG 1067
+ G T++ H IDI + D + +MK G
Sbjct: 186 EMQKELGLTIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 51/202 (25%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
VS + + G + AL+G +GAGK+TLM +L G + SG I + G
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKEVR------ 69
Query: 925 ISGYCEQTDIHSPH-------------------VTVYESLVYSAWLRLPPEVD-SDTRKM 964
I SP +TV E+++ +D R
Sbjct: 70 ---------IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120
Query: 965 FVEEVMEL--VELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
++E+ E + ++P +A V LS +++R+ I L ++ +DEPT+ L
Sbjct: 121 -IKELSERYGLPVDP--DAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLT 172
Query: 1023 ARAAAIVMRTVRNTVDTGRTVV 1044
+ A + +R G+T++
Sbjct: 173 PQEADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 24/164 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV---SGSITISGYP--KNQET 921
L VS + G + +G +GAGK+T M ++ G Y+ SGS+ + G +N +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 922 FARISGYCEQTDIHSP---HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
R GY + H+P + V E L + A + + K VEE++ELV L P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPE 126
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 3e-11
Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP-KNQETFA 923
L+GVS G + AL+G +GAGKTTL+ + G R SG I G
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR----SGRIIFDGEDITGLPPHE 74
Query: 924 RIS---GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTR--KMFVEEVMELV-ELNP 977
R Y + P +TV E+ L L D + +EEV EL L
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEEN------LLLGAYARRDKEAQERDLEEVYELFPRLKE 128
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 1038 DTGRTVVCTIHQ 1049
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 62/213 (29%), Positives = 94/213 (44%), Gaps = 29/213 (13%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET---FA 923
+ ++ G L+G SG+GKTT M ++ + SG I I G ++
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI--NRLIEPTSGEIFIDGEDIREQDPVELR 74
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV 983
R GY Q PH+TV E++ L P+ R +E++ LV L+P E
Sbjct: 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRER---ADELLALVGLDP-AEFAD 130
Query: 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRNTV 1037
P LS Q++R+ +A L A+P ++ MDEP LD + R R
Sbjct: 131 RYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEFKRLQQ 183
Query: 1038 DTGRTVVCTIHQPSIDIFDAF---DELLLMKRG 1067
+ G+T+V H DI +AF D + +MK G
Sbjct: 184 ELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 48/208 (23%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA 923
LKG+ + G + ++G SG+GK+TL+ + + SG+I I G +
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDK-- 68
Query: 924 RISGYCEQTDIHS---------------PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEE 968
+I+ PH+TV E++ + P +V + M E
Sbjct: 69 --------KNINELRQKVGMVFQQFNLFPHLTVLENITLA-----PIKV----KGMSKAE 111
Query: 969 VMELVELNPIREAL--VGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021
E E L VGL + LS Q++R+ IA L NP ++ DEPTS L
Sbjct: 112 AEERA-----LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSAL 166
Query: 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049
D V+ +++ + G T+V H+
Sbjct: 167 DPELVGEVLDVMKDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 27/174 (15%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA- 923
+ L VS + G + A++G SG+GK+TL+ +L G T SG + +G P ++ + A
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAA 80
Query: 924 ------RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
+ G+ Q P T E++ +P + +E++
Sbjct: 81 KAELRNQKLGFIYQFHHLLPDFTALENVA------MPLLIGKKKPAEINSRALEML---- 130
Query: 978 IREALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
A VGL S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 131 ---AAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 855 KAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG 914
K+ G + L L GV + G AL+G SG+GK+TL+ +LAG G SG +++ G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 915 YP---KNQETFARIS----GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVE 967
P ++E A++ G+ Q+ + P + E++ A LR E +R
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----N 125
Query: 968 EVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
L+E + + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 45/209 (21%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPK 917
PD E LKG++ G + AL+G +GAGK+TL G + T SG + I G P
Sbjct: 12 PDGT-EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPI 66
Query: 918 NQETFARISGYCEQT----------DIHSPHVTVYESLVYSAW-LRLPPEVDSDTRKMFV 966
+ + + +T + +P TV E + + L L E
Sbjct: 67 KYDKKSLLE--VRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE---------- 112
Query: 967 EEVMELVELNPIREAL--VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTS 1019
EV + V +EAL VG+ G LS Q+KR+ IA L P II +DEPTS
Sbjct: 113 -EVEKRV-----KEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
Query: 1020 GLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
GLD A+ +M+ + + G T++ + H
Sbjct: 167 GLDPMGASQIMKLLYDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-11
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP----KNQETF 922
LK + G A++G SG+GK+TL+ +LAG GSIT++G Q
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALR 411
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NPIREA 981
IS ++ + S T+ ++L RL SD + ++ V L + A
Sbjct: 412 ETISVLTQRVHLFSG--TLRDNL------RLANPDASDEE---LWAALQQVGLEKLLESA 460
Query: 982 LVGLP-----GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1036
GL G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 461 PDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520
Query: 1037 VDTGRTVV-CTIHQPSIDIFD 1056
+ G+T++ T ++ D
Sbjct: 521 AE-GKTLLMVTHRLRGLERMD 540
|
Length = 573 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 5e-11
Identities = 56/169 (33%), Positives = 81/169 (47%), Gaps = 31/169 (18%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YVSGSITISGYPKNQETF 922
LK +S + + G L+G SG GKTTL+ ++AG R+T G Y G I+ P + +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD-ITRLPPQKRDY 78
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE-- 980
G Q+ P++TV +++ Y R M EV E V E
Sbjct: 79 ----GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERV-----AELL 119
Query: 981 ALVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
LVGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 120 DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 74/240 (30%), Positives = 110/240 (45%), Gaps = 30/240 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK---NQETFA 923
L +S F G +T L+G +G+GK+TL+ +L GR G I + P + + FA
Sbjct: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPP-SEGEILLDAQPLESWSSKAFA 84
Query: 924 RISGYCEQTDIHSPHVTVYESLV-------YSAWLRLPPEVDSDTRKMFVEEVMELVELN 976
R Y Q + +TV E LV + A R D K VEE + LV L
Sbjct: 85 RKVAYLPQQLPAAEGMTVRE-LVAIGRYPWHGALGRFGAA---DREK--VEEAISLVGLK 138
Query: 977 PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1035
P+ LV LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1036 TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG-PLGRHCSQLIKYFEGIDGVP 1094
+ + G TV+ +H I++ + + L+ RGGE I G P + + E I G+P
Sbjct: 194 SQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGTPAELMRGETL---EQIYGIP 248
|
Length = 265 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 24/215 (11%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA 923
LKGVS + G + A++G SG+GK+TL+ +L G SG + +G ++ +
Sbjct: 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSN 75
Query: 924 RIS-------GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN 976
+ G+ Q P T E++ + ++ K E++E V L
Sbjct: 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEA---KERAYEMLEKVGL- 131
Query: 977 PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTV 1033
+ P S LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 --EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 1034 RNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068
++T VV H ++ D +L MK G
Sbjct: 188 NRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 6e-11
Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 48/264 (18%)
Query: 820 NEADQNRKRGMI-LPFEPHSITFDDI--RYALDMPQEMKAQGIPDDRLEFLKGVSGAFRP 876
N + R G+ LP +ITF++I RYA D P E L ++ +P
Sbjct: 436 NSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP-------------EVLSNLNLDIKP 482
Query: 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTD 933
G ++G SG+GK+TL +L T + G + + G R G
Sbjct: 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIADPAWLRRQMG------ 534
Query: 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP------- 986
V + E++++S +R + E V+ +L + + LP
Sbjct: 535 -----VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587
Query: 987 ---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1043
G LS QR+R+ IA LV NP I+ DE TS LD + A++MR +R + GRTV
Sbjct: 588 GEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICRGRTV 645
Query: 1044 VCTIHQPSIDIFDAFDELLLMKRG 1067
+ H+ + A D ++++++G
Sbjct: 646 IIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 6e-11
Identities = 64/257 (24%), Positives = 103/257 (40%), Gaps = 93/257 (36%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR 228
L D++ + L ++GP SGK++LL AL G+L K SG V+ G +V Q
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPGS--IAYVSQ- 73
Query: 229 TSAYISQNDLHIGEMTVRETLAFSARCQGVGP----RYE-VLQELSRREKAANIKPDPDI 283
+I QN T+RE + F P RYE V+ KA ++PD
Sbjct: 74 -EPWI-QNG------TIRENILFGK------PFDEERYEKVI-------KACALEPD--- 109
Query: 284 DLIMKAASLEGQEKNVVTDYVLKIL--GLEVCADTMVGDEMLRGI--SGGQRKRLTTGEM 339
L+IL G T +G+ +GI SGGQ++R
Sbjct: 110 ---------------------LEILPDGDL----TEIGE---KGINLSGGQKQR------ 135
Query: 340 LVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAV-----ISLLQPA 387
+ ARA+ +D+ + +D+ I + + + N T + + LL A
Sbjct: 136 -ISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHA 194
Query: 388 PETYELFDDLILLSDGQ 404
D +++L +G+
Sbjct: 195 -------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-11
Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 18/213 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSIT-----ISGYPKNQ 919
++ VS PG + ++G SG+GK+TL L G + G SG + + G + +
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84
Query: 920 ET--FARISGYCEQTDIHS--PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
+ Q + S P +T+ + + + L ++ E++E V L
Sbjct: 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKR--AVELLEQVGL 142
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
P E P LS R+R+ IA+ L P ++ DEPT+ LD A ++ +++
Sbjct: 143 -PDPERRDRYPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKD 199
Query: 1036 -TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ G V+ H + + + D +++M +G
Sbjct: 200 LQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 7e-11
Identities = 59/263 (22%), Positives = 92/263 (34%), Gaps = 67/263 (25%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
IL VS + + LLG +GKTTLL + G L SG + ++G + P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPP 69
Query: 227 QRTS----AYISQNDLHIGEMTVRETL--AFSARCQGVGPR-----YEVLQELSRREKAA 275
+ Y+ + E+TV E L AR + YE+ L R K
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQ- 128
Query: 276 NIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLT 335
A +L SGG+++ L
Sbjct: 129 ------------LAGTL----------------------------------SGGEQQMLA 142
Query: 336 TGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILN--GTAVISLLQPAPETYEL 393
L+ + L +DE S GL IV + ++I L G ++ + Q A E+
Sbjct: 143 IARALMSRPKLLLLDEPSEGLAPK----IVEEIFEAIRELRDEGVTILLVEQNARFALEI 198
Query: 394 FDDLILLSDGQIVYQGPRENVLE 416
D +L G++V +G +L
Sbjct: 199 ADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 7e-11
Identities = 66/270 (24%), Positives = 113/270 (41%), Gaps = 71/270 (26%)
Query: 163 RKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL--KF----SGRVTY 216
+L D+S I L+GP SGK+TL+ +L +F SGR+
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV---------NLIPRFYDVDSGRILI 61
Query: 217 NGHGMEEFVPQ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREK 273
+GH + ++ R +SQ D+ + TV E +A+ G +E+ +
Sbjct: 62 DGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAY-------GRPGATREEVEEAAR 113
Query: 274 AANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI--SGGQR 331
AAN + IM+ L DT++G+ RG+ SGGQR
Sbjct: 114 AANAH-----EFIME---------------------LPEGYDTVIGE---RGVKLSGGQR 144
Query: 332 KRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI-----SLLQP 386
+R+ L+ L +DE ++ LD+ + + +L + + N T + S ++
Sbjct: 145 QRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIEN 202
Query: 387 APETYELFDDLILLSDGQIVYQGPRENVLE 416
A D +++L DG+IV +G E +L
Sbjct: 203 A-------DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-11
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 882 LMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP-KNQETFARISGYCEQTDIHSPHVT 940
L+G SG GKTTL+ +LAG + SGSI + G N R Q+ PH+T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLT 1000
V E++ + +R +V K V E + LV+L LS Q++R+
Sbjct: 59 VEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEF-----ADRKPHQLSGGQQQRVA 110
Query: 1001 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFD 1059
+A LV P I+ +DEP S LD + + ++ + G T V H + + D
Sbjct: 111 LARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS-D 169
Query: 1060 ELLLMKRG-------GEEIYVGPLGRHCSQLI 1084
+ +M++G EEIY P ++ I
Sbjct: 170 RIAIMRKGKIAQIGTPEEIYEEPANLFVARFI 201
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 8e-11
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY------PKNQE 920
L VS G + ++G SGAGK+TL+ ++ + SGS+ + G
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELR 79
Query: 921 TFARISGYCEQTDIHSPHV----TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN 976
+ G Q H ++ TV+E++ + P E+ + + V EL+EL
Sbjct: 80 QLRQKIGMIFQ---H-FNLLSSRTVFENVAF------PLELAGVPKAEIKQRVAELLEL- 128
Query: 977 PIREALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVM 1030
VGL + LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 129 ------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 1031 RTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ G T+V H+ + + D + ++ +G
Sbjct: 183 LLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-10
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 34/215 (15%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--VSGSITISGYPKNQ---ET 921
L VS RPG A++G G+GK+TL+ +L G Y GS+ + G Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 922 FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEE---VMELVELNP- 977
R GY Q D + T+ +++ A P D D + E V E V +P
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYAD-DEEILRAAELAGVTEFVRRHPD 589
Query: 978 -----IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1032
I E LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 590 GLDMQIGE------RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
++ + G+T+V H+ S + D D +++M G
Sbjct: 644 LKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-10
Identities = 80/319 (25%), Positives = 135/319 (42%), Gaps = 73/319 (22%)
Query: 123 FEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHV---LPSRKKPLTILHDVSGIIKP 179
F L+ E G+RA+ G + + +V P R +P L +S +I+P
Sbjct: 308 FTLLDSPPEKDTGTRAIERA--------RGDVEFRNVTFRYPGRDRP--ALDSISLVIEP 357
Query: 180 QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQN 236
L+G SGK+TL+ + D SG++ +GH + ++ R A +SQ
Sbjct: 358 GETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQ- 413
Query: 237 DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQE 296
D+ + T+ +A+ Q R E+ + L AA +
Sbjct: 414 DVVLFNDTIANNIAYGRTEQA--DRAEIERAL----AAAYAQ------------------ 449
Query: 297 KNVVTDYVLKI-LGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTG 355
D+V K+ LGL DT +G+ + +SGGQR+RL L+ A L +DE ++
Sbjct: 450 -----DFVDKLPLGL----DTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSA 499
Query: 356 LDSSTTYQIVNSLRQSIHILNG--TAVIS--LLQPAPETYELFDDLILLSDGQIVYQGPR 411
LD+ + + +L ++ G T VI+ L T E D ++++ DG+IV +G
Sbjct: 500 LDNESERLVQAALE---RLMQGRTTLVIAHRL-----STIEKADRIVVMDDGRIVERGTH 551
Query: 412 ENVLE------FFERMGFK 424
+L M F+
Sbjct: 552 NELLARNGLYAQLHNMQFR 570
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 11/196 (5%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ET 921
E LKGV+ + G + A+MG +G+GK+TL +AG + SG+I G + +
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE 73
Query: 922 FARISGYCE-QTDIHSPHVTVYESL--VYSAWLRLPPEVDSDTRKMF--VEEVMELVELN 976
AR + Q P V+ E L +A E D ++ + L+ ++
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMD 133
Query: 977 PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1036
E + G S ++KR I + P + +DE SGLD A IV +
Sbjct: 134 ---EEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190
Query: 1037 VDTGRTVVCTIHQPSI 1052
+ R+ + H +
Sbjct: 191 REPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 44/243 (18%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
L D+S ++P LLGP GKTTLL +AG D SG + +G + P+
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 228 RTS-AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
R + + Q+ +TV E +AF + +GV P+ E+ R +
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGV-PK----AEIRARVREL----------- 114
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
L+++GLE + +SGGQ++R+ L
Sbjct: 115 ------------------LELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSL 151
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406
L +DE + LD+ ++ L++ L T + E L D + ++++G+IV
Sbjct: 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIV 210
Query: 407 YQG 409
G
Sbjct: 211 QVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 65/251 (25%), Positives = 94/251 (37%), Gaps = 43/251 (17%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG---HGMEEF 224
I+ V P LT LLGP SGK+TLL LAG L D +G V G HG+
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 225 VPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
R A + Q+ +TVR+ +A L R + D D
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVA-----------------LGRIPHRSLWAGDSPHD 114
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
V D L L A D + +SGG+R+R+ L
Sbjct: 115 -------------AAVVDRALARTELSHLA-----DRDMSTLSGGERQRVHVARALAQEP 156
Query: 345 RALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404
+ L +DE + LD + + +R+ G V++ L D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 405 IVYQGPRENVL 415
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 67/273 (24%), Positives = 104/273 (38%), Gaps = 84/273 (30%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
T+L DVS ++P + +LGP +GK+TLL AL+G+L D SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 228 ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
R A + Q+ ++ + F+ EV+
Sbjct: 73 ELARRRAVLPQH------SSL--SFPFTVE--------EVVA------------------ 98
Query: 285 LIMKAA--SLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKR------LTT 336
M A L E + + L + L + +SGG+++R L
Sbjct: 99 --MGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRVQLARVLAQ 151
Query: 337 GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHIL---------NGTAVISLL--- 384
GP R L +DE ++ LD L H+L G AVI +L
Sbjct: 152 LWEPDGPPRWLLLDEPTSALD----------LAHQHHVLRLARQLAHERGLAVIVVLHDL 201
Query: 385 -QPAPETYELF-DDLILLSDGQIVYQGPRENVL 415
A + D ++LL G++V G VL
Sbjct: 202 NLAA-----RYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 876 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY-----------PKNQETFAR 924
G+ TAL G SG+GKT+L++++AG G I ++G P + R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKR---R 77
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984
I GY Q PH TV +L Y W + + D +LV L I L
Sbjct: 78 I-GYVFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDR 124
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
PG LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 125 YPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 27/169 (15%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG--YPKNQETFAR 924
LK V+ PG + AL+G +GAGK+TLM VL+G G+ITI+ Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYNKLDHKLAA 78
Query: 925 ISG----YCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
G Y E + I +TV E+L R T+K+ +++ E+
Sbjct: 79 QLGIGIIYQELSVID--ELTVLENLYIG---RHL------TKKVCGVNIIDWREMRVRAA 127
Query: 981 AL---VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021
+ VGL V+ LS ++ L IA L+ + +I MDEPTS L
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 20/208 (9%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYVSGSITISGYPKNQETFA 923
L+GVS G +T ++G +G GKTTL+ L G K+G I+ P ++ A
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV-ELNPIREAL 982
I Y Q P +TV E+L ++ + + EL P+ + +
Sbjct: 76 GI-AYVPQGREIFPRLTVEENL----------LTGLAALPRRSRKIPDEIYELFPVLKEM 124
Query: 983 VGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1041
+G G G LS Q+++L IA LV P ++ +DEPT G+ + R +R G
Sbjct: 125 LGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGG 182
Query: 1042 TVVCTIHQPSIDI-FDAFDELLLMKRGG 1068
+ + Q +D + D +M+RG
Sbjct: 183 MAILLVEQ-YLDFARELADRYYVMERGR 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 38/170 (22%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE 920
D LK +S G A++G +GAGK+TL+ +LAG G +SG++ + G
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
GY +Q T + E + +R
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTVLEELSEGFPDGDEQEVRA 421
Query: 981 AL--VGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
L G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 45/234 (19%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP--- 226
L VS + P L+GP +GK+TLL L G + G + NG + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 227 QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
+ A++ Q+ + T+ E + + +PD I
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRLA-------------------------RPDASDAEI 428
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
+A G D + L + DT +G+ G+SGGQ +RL + A
Sbjct: 429 REALERAG------LDEFVAALPQGL--DTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400
L +DE + LD+ T +++ +LR + G V+ L+ L D +++L
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRA---LAQGRTVL-LVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 60/256 (23%)
Query: 185 LLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEM 243
+LGP SGK+ LL +AG + D SG++ NG + P+ R +Y+ QN M
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHM 86
Query: 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDY 303
TV + +A+ + +++ ++E +
Sbjct: 87 TVYKNIAYGLK----------KRKVDKKEIERKVLE------------------------ 112
Query: 304 VLKILGLEVCADTMVGDEML----RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSS 359
+ ++LG+ D +L +SGG+++R+ LV + L +DE + LD
Sbjct: 113 IAEMLGI---------DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163
Query: 360 TTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFE 419
T ++ L++ I G V+ + E + L D + ++ +G+++ G E V
Sbjct: 164 TKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV----- 217
Query: 420 RMGFKCPERKGVADFL 435
FK P+ + VA+FL
Sbjct: 218 ---FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 61/279 (21%), Positives = 99/279 (35%), Gaps = 86/279 (30%)
Query: 158 HVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217
P+ + L DVS IK L+G SGK+TL A+ G L K SG + ++
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK--PTSGSIIFD 65
Query: 218 GHGMEE--------------FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYE 263
G + + V Q S N MT+ E +A E
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQ--DPMSSLNPR----MTIGEQIA------------E 107
Query: 264 VLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323
L+ + K + +L +GL V +
Sbjct: 108 PLRIHGKLSKKE--------------------ARKEAVLLLLVGVGL----PEEVLNRYP 143
Query: 324 RGISGGQRKRLTTGEMLVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILN 376
+SGGQR+R V ARAL DE ++ LD S QI++ L++ +
Sbjct: 144 HELSGGQRQR-------VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEEL 195
Query: 377 GTAVI------SLLQPAPETYELFDDLILLSDGQIVYQG 409
G ++ ++ ++ D + ++ G+IV +G
Sbjct: 196 GLTLLFITHDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 22/199 (11%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYVSGSITISG---YPK 917
L VS F P +TAL+G SG+GK+TL M+ L T ++GSI +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 918 NQET--FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
+T + G Q P +++YE++VY LRL D VE+ ++ +
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 976 -NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
+ +++ L GLS Q++R+ IA L +P II +DEPTS LD +A + T+
Sbjct: 135 WDEVKDRL--HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLL 192
Query: 1035 NTVD--TGRTVVCTIHQPS 1051
D T V ++ Q S
Sbjct: 193 GLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 60/254 (23%), Positives = 95/254 (37%), Gaps = 70/254 (27%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH----GMEEF 224
L VS + + LLGP +GKTTL+ LA SG + +G ++
Sbjct: 15 ALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL 70
Query: 225 VPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
+R Y+ Q TVRE L + A +G+ S+ KA
Sbjct: 71 --RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP---------SKEVKAR--------- 110
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
D VL+++ L A +G +SGG R+R+ + LVG
Sbjct: 111 ----------------VDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDP 149
Query: 345 RALFMDEISTGLDSSTTYQIVNSLRQ---------SIHILNGTAVISLLQPAPETYELFD 395
L +DE + GLD + N L + S HI+ L +
Sbjct: 150 SILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE------------SLCN 197
Query: 396 DLILLSDGQIVYQG 409
+ +L+ G++V++G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-10
Identities = 59/215 (27%), Positives = 87/215 (40%), Gaps = 42/215 (19%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR 228
+L VS + P +LGP SGK+TLL LAG L G VT +G +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 229 TSAYIS--QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
+S D H+ + TVRE L + E+ L R A ++ PD
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLAR---PDATDEELWAALERVGLADWLRALPD---- 459
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
GL DT++G E +SGG+R+RL L+ A
Sbjct: 460 ----------------------GL----DTVLG-EGGARLSGGERQRLALARALLADAPI 492
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI 381
L +DE + LD+ T +++ L + L+G V+
Sbjct: 493 LLLDEPTEHLDAETADELLEDLLAA---LSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 4e-10
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 39/201 (19%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY------PKNQE 920
LK VS + G + ++G SGAGK+TL+ + G + SGS+ + G K
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELR 78
Query: 921 TFARISGYCEQTDIHSPHV------TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE 974
R G Q H TV+E++ P E+ + E V+EL+E
Sbjct: 79 KARRRIGMIFQ------HFNLLSSRTVFENVAL------PLEIAGVPKAEIEERVLELLE 126
Query: 975 LNPIREALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
L VGL + LS Q++R+ IA L NP ++ DE TS LD +
Sbjct: 127 L-------VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
Query: 1030 MRTVRNT-VDTGRTVVCTIHQ 1049
+ +R+ + G T+V H+
Sbjct: 180 LALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 29/206 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L+ ++ G L ++G SG GKTTL++++AG Y GSIT+ G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
G Q + P V +++ + L V+ R +++ VGL
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQML----------KKVGLE 119
Query: 987 G-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV-- 1037
G + LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ +
Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQ 176
Query: 1038 DTGRTVVCTIHQPSIDIFDAFDELLL 1063
+TG+ V+ H +F A + +LL
Sbjct: 177 ETGKQVLLITHDIEEAVFMATELVLL 202
|
Length = 255 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 49/214 (22%), Positives = 77/214 (35%), Gaps = 53/214 (24%)
Query: 148 NMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD 207
MLEG L + + +S + +L GP SGKTTLL +AG L
Sbjct: 1 MMLEG-----EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL--- 52
Query: 208 LKFSGRVTYNGHGMEEFVPQRTSAYIS-QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQ 266
+G + +G +++ Y+ +N + +TV E L F A G
Sbjct: 53 PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMK-PALTVAENLEFWAAFLG--------- 102
Query: 267 ELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326
+ DI AA L+ +GL A G +
Sbjct: 103 -----------GEELDIA----AA--------------LEAVGLAPLAHLPFGY-----L 128
Query: 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
S GQ++R+ +LV +DE + LD++
Sbjct: 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 10/189 (5%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET 921
D + LKG+S + G TAL+G +GAGK+TL+ L G G + + G N E
Sbjct: 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAEN 73
Query: 922 FARISGYCEQTDIHSPHVTVYESLVYS--AWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
+ P V+ S V+ A+ + +D D + VEE ++ V + R
Sbjct: 74 EKWVRSKVGLV-FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFR 132
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+ LS Q+KR+ IA L +P +I +DEP + LD R +M + +
Sbjct: 133 DK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187
Query: 1040 GRTVVCTIH 1048
G+TV+ H
Sbjct: 188 GKTVIVATH 196
|
Length = 274 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-10
Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 32/231 (13%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY---- 915
D R L G+S G A++G SGAGK+T++ +L SGSITI G
Sbjct: 272 YDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRD 329
Query: 916 PKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
Q I + T + + T+ ++ Y P+ ++ V E ++
Sbjct: 330 VTQQSLRRAIGIVPQDTVLFND--TIAYNIKYGR-----PDATAEE----VGAAAEAAQI 378
Query: 976 NPIREAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028
+ ++L VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 379 HDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437
Query: 1029 VMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRH 1079
+ +R V GRT + H+ S I DA DE++++ G + G H
Sbjct: 438 IQAALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 50/255 (19%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+L DVS I +T ++GP +GK+TLL ++ L KD SG +T +G + +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSK 71
Query: 228 RTSAYIS----QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
+ +S +N ++ +TVR+ + F R+ Q +E D
Sbjct: 72 ELAKKLSILKQENHINS-RLTVRDLVGFG--------RFPYSQGRLTKE---------DR 113
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+I +A ++ L LE + D L +SGGQR+R +L
Sbjct: 114 RIINEA---------------IEYLHLE-----DLSDRYLDELSGGQRQRAFIAMVLAQD 153
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISL--LQPAPETYELFDDLILLS 401
+ +DE LD + QI+ LR+ L T V+ L + A Y D ++ L
Sbjct: 154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA-SCYS--DHIVALK 210
Query: 402 DGQIVYQGPRENVLE 416
+G++V QG + +++
Sbjct: 211 NGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 7e-10
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 73/194 (37%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITISGYPKNQ 919
LK ++ +TAL+G SG GK+TL+ D++ G + V G + + G
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG----- 73
Query: 920 ETFARISGYCEQTDIHSPHV---------------------TVYESLVYSAWLRLPPEVD 958
+I+ P V ++Y+++ Y LRL D
Sbjct: 74 ------------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG--LRLHGIKD 119
Query: 959 SDTRKMFVEEVMELVELNPIREALVGL----------PGVSGLSTEQRKRLTIAVELVAN 1008
E+ E+VE + +++A L + GLS Q++RL IA L
Sbjct: 120 K--------ELDEIVE-SSLKKA--ALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVK 167
Query: 1009 PSIIFMDEPTSGLD 1022
P ++ MDEPTS LD
Sbjct: 168 PEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 7e-10
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 30/171 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSITISGYPKNQ---- 919
L +S PG L ++G +GAGKTT+MDV+ G R G V G ++G P++Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 920 ---ETFARISGYCEQT-----DIHSP-HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVM 970
F + + + T ++ P +V+ SL + RL E K +EEV+
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFF----RLSAEE-----KDRIEEVL 128
Query: 971 ELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021
E + L + L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 129 ETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 8e-10
Identities = 68/264 (25%), Positives = 105/264 (39%), Gaps = 76/264 (28%)
Query: 162 SRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221
+ + L DV+ I+ ++GP SGK+T LL L G L D SG V NG +
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGL--DKPTSGEVLINGKDL 69
Query: 222 EEFVPQRTSA-------YISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREK 273
+ + + ++ QN +L + ++TV E + G RR++
Sbjct: 70 TKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENVELPLLIAGKSAG--------RRKR 120
Query: 274 AANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKR 333
AA + +L++LGLE E+ SGGQ++R
Sbjct: 121 AA--------------------------EELLEVLGLEDRLLKKKPSEL----SGGQQQR 150
Query: 334 LTTGEMLVGPARAL-------FMDEISTG-LDSSTTYQIVNSLRQSIHILNGTAVI---- 381
V ARAL DE TG LDS T +++ LR+ ++ G +I
Sbjct: 151 -------VAIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMVTH 201
Query: 382 SLLQPAPETYELFDDLILLSDGQI 405
PE + D +I L DG+I
Sbjct: 202 D-----PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 8e-10
Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 39/209 (18%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYVSGSITISGYPKNQ---ETFARISG 927
G AL+G SGAGKT+L++ L G + GS+ I+G + E++ +
Sbjct: 374 PAGQRIALVGPSGAGKTSLLNALLGFLPYQ-------GSLKINGIELRELDPESWRKHLS 426
Query: 928 YCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP- 986
+ Q + PH T+ ++++ P+ E++ + +E + E L LP
Sbjct: 427 WVGQ-NPQLPHGTLRDNVLLGN-----PDASD-------EQLQQALENAWVSEFLPLLPQ 473
Query: 987 --------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038
+GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N
Sbjct: 474 GLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAAS 532
Query: 1039 TGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+T + HQ ++ +D++ +M+ G
Sbjct: 533 RRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 8e-10
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 24/236 (10%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
I F+ + Y ++ + D LE KG TAL+G +G+GK+TL+ L
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGS--------YTALIGHTGSGKSTLLQHLN 53
Query: 899 G--RKTGGYVS-GSITISGYPKNQETFARISGYCEQTDI--HSPHVTVYESLVYSAWLRL 953
G + T G V+ G I +S K +E I ++ + P ++E V
Sbjct: 54 GLLQPTEGKVTVGDIVVSSTSKQKE----IKPVRKKVGVVFQFPESQLFEETVLKDVAFG 109
Query: 954 PPE--VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSI 1011
P + + + E +E+V L E P LS Q +R+ IA L P +
Sbjct: 110 PQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP--FELSGGQMRRVAIAGILAMEPEV 165
Query: 1012 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ +DEPT+GLD +A +M+ + +G+TVV H D+ D D + L+++G
Sbjct: 166 LVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 70/265 (26%), Positives = 115/265 (43%), Gaps = 53/265 (20%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL-----GKDLKFSGRVTYNGHGME 222
IL D+S I+P R+T LLG +GK+TLL ALAG L + + +G VT NG +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 223 EFVPQRTS---AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKP 279
R + A + Q + AFSAR + RY +RR A +
Sbjct: 75 AIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRY----PHARRAGALTHR- 121
Query: 280 DPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEM 339
D ++ +A +L G A +VG ++ +SGG+ R+ +
Sbjct: 122 --DGEIAWQALALAG-------------------ATALVGRDVTT-LSGGELARVQFARV 159
Query: 340 L---------VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPET 390
L P R L +DE + LD + +++++++R+ N V++++
Sbjct: 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLA 218
Query: 391 YELFDDLILLSDGQIVYQGPRENVL 415
D + +L+DG IV G +VL
Sbjct: 219 ARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 9e-10
Identities = 62/206 (30%), Positives = 85/206 (41%), Gaps = 46/206 (22%)
Query: 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 897
+TF RY D P L VS PG A++G SG+GK+TL+ +L
Sbjct: 456 RVTF---RYRPDGPL-------------ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL 499
Query: 898 AGRKTGGYVSGSITISGYP---KNQETFARISGYCEQT-DIHSPHVTVYESLVYSAWLRL 953
G +T SGS+ G + + R G Q + S +++E++ A L L
Sbjct: 500 LGFETPE--SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL 555
Query: 954 PPEVDSDTRKMFVEEVMELVEL----NPIREALVGL-----PGVSGLSTEQRKRLTIAVE 1004
+E E + IR +G+ G LS QR+RL IA
Sbjct: 556 -------------DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARA 602
Query: 1005 LVANPSIIFMDEPTSGLDARAAAIVM 1030
LV P I+ DE TS LD R AIV
Sbjct: 603 LVRKPRILLFDEATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 24/192 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSITISGYPKNQETFA 923
+ VS G + L+G +GAGKTT ++ G R G + I+ P ++ A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 924 RIS-GYCEQTDIHSPHV----TVYESLVYSAWLRLPPEVDSDT--RKMFVEEVMELVELN 976
R+ GY Q + TV ++++ +R E D RK ++ ++E +
Sbjct: 78 RLGIGYLPQ----EASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALLEEFHIT 130
Query: 977 PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1036
+R++ S LS +R+R+ IA L ANP I +DEP +G+D A + R +++
Sbjct: 131 HLRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL 185
Query: 1037 VDTGRTVVCTIH 1048
D G V+ T H
Sbjct: 186 KDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 9e-10
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 54/252 (21%)
Query: 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 897
SI F+++ Y M+ +G L +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQHF 53
Query: 898 AGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEV 957
SG+ITI+GY ET + ++ V SLV+ PE
Sbjct: 54 NALLKPS--SGTITIAGYHITPETGNK--------NLKKLRKKV--SLVFQF-----PEA 96
Query: 958 DSDTRKMFVEEVMELVELNPIR----------EALVGLPGVSGLSTE------------Q 995
++F V++ VE P +AL L V GLS + Q
Sbjct: 97 -----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSGGQ 150
Query: 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1055
+R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D+
Sbjct: 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVA 209
Query: 1056 DAFDELLLMKRG 1067
+ D++L+++ G
Sbjct: 210 EYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 47/201 (23%), Positives = 70/201 (34%), Gaps = 58/201 (28%)
Query: 158 HVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217
+T L D+S ++ L+GP GK+TLL +AG SG V +
Sbjct: 8 KTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVD 64
Query: 218 GHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI 277
G + P R Y+ Q D + +TV + +A QGV RE+A +
Sbjct: 65 GEPVTGPGPDR--GYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARERAEEL 115
Query: 278 KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG 337
L+++GL + +SGG R+R
Sbjct: 116 ---------------------------LELVGLSGFENAYPHQ-----LSGGMRQR---- 139
Query: 338 EMLVGPARA-------LFMDE 351
V ARA L +DE
Sbjct: 140 ---VALARALAVDPDVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 66/284 (23%), Positives = 105/284 (36%), Gaps = 66/284 (23%)
Query: 150 LEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLK 209
L+G LN H +++ + + D+S I + LG +GK+T L L G L L
Sbjct: 22 LKGSLN--HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LP 76
Query: 210 FSGRVTYNGHGMEEFVPQRTSAYISQNDLHIG-EMTVRETLAFSARCQGVGPRYEVLQEL 268
SG+V NG P R + IG M + L + EVL+ +
Sbjct: 77 TSGKVRVNG-----KDPFRRREEYLR---SIGLVMGQKLQLWW---DLPALDSLEVLKLI 125
Query: 269 SRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328
+ E D++ +IL L + + + R +S
Sbjct: 126 ---------------------YEIPDDEFAERLDFLTEILDL----EGFLKWPV-RKLSL 159
Query: 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQ-----------SIHILNG 377
GQR R L+ P + LF+DE + GLD + I L++ + HI +
Sbjct: 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDD 219
Query: 378 TAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERM 421
A L D ++L+ GQ+V+ G + E F
Sbjct: 220 IA------------TLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 1e-09
Identities = 57/264 (21%), Positives = 94/264 (35%), Gaps = 65/264 (24%)
Query: 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV 225
+ L VS ++ + LLG +GKTTLL + G + SGR+ ++G +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLP 71
Query: 226 PQRTS----AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
P + AY+ + +TV E L +G R + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENLL-------LG--------AYARRDKEAQERDL 116
Query: 282 DIDLIMKAASLEGQEKNVVTDY--VLKILGLEVCADTMVGDEMLRG----ISGGQRKRLT 335
+ V + LK E +SGG+++ L
Sbjct: 117 EE----------------VYELFPRLK--------------ERRNQRAGTLSGGEQQMLA 146
Query: 336 TGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLL---QPAPETYE 392
L+ + L +DE S GL IV + ++I L +++L Q A E
Sbjct: 147 IARALMSRPKLLLLDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALE 202
Query: 393 LFDDLILLSDGQIVYQGPRENVLE 416
+ D +L +G+IV G +L
Sbjct: 203 IADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-09
Identities = 74/253 (29%), Positives = 106/253 (41%), Gaps = 51/253 (20%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR 228
+L +++ IKP ++GP SGK+TL KL + L + PQ
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTL-----TKLLQRL---------------YTPQH 511
Query: 229 TSAYISQNDLHIGE-MTVRETLAFSARCQGVGPRYEVLQE---LSR--REKAANIKPDPD 282
+ DL I + +R R GV VLQE SR R+ A P
Sbjct: 512 GQVLVDGVDLAIADPAWLR-------RQMGV-----VLQENVLFSRSIRDNIALCNPGAP 559
Query: 283 IDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG 342
+ ++ AA L G D+ I L +T VG E +SGGQR+R+ LVG
Sbjct: 560 FEHVIHAAKLAGAH-----DF---ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVG 610
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402
R L DE ++ LD + I+ ++R+ I G VI + T D +I+L
Sbjct: 611 NPRILIFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEK 666
Query: 403 GQIVYQGPRENVL 415
GQI G E +L
Sbjct: 667 GQIAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR--ISGYCE 930
F G +TA++G SG+GK+TL++++AG +T SG + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 931 QTDIHSPHVTVYES--LVYSAWLRLPPE----VDSDTRKMFVEEVMELVELNPIREALVG 984
+ ++ H+TV ++ L S L+L E ++ ++ + + +
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR------------ 124
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1041
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1042 TVVCTIHQPSIDIFDAFDELLLMKRG 1067
TV+ HQP D ++ + G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 29/213 (13%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKN-----Q 919
LKG++ F +T L+G +G GK+TL L+G R G V Y K +
Sbjct: 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR 76
Query: 920 ETFARISGYCEQ----TDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
+ A + EQ TDI S + +S PE + R V+E + LV+
Sbjct: 77 QQVATVFQDPEQQIFYTDIDS-------DIAFSLRNLGVPEAEITRR---VDEALTLVDA 126
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
R + LS Q+KR+ IA LV + +DEPT+GLD ++ +R
Sbjct: 127 QHFRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
Query: 1036 TVDTGRTVVCTIHQPSID-IFDAFDELLLMKRG 1067
V G V+ + H ID I++ D + ++++G
Sbjct: 182 IVAQGNHVIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-09
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 40/210 (19%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH---GMEE 223
L L DVS ++P + L+GP +GKTTL ++G L SG V ++G G+
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 224 FVPQRTSAYIS---QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPD 280
+ I Q E+TV E + +A+ + +L +RRE+
Sbjct: 70 H--EIARLGIGRTFQIPRLFPELTVLENVMVAAQART---GSGLLLARARREERE----- 119
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
+ A + +L+ +GL AD G+ +S GQ++RL L
Sbjct: 120 -----ARERA-----------EELLERVGLADLADRPAGE-----LSYGQQRRLEIARAL 158
Query: 341 VGPARALFMDEISTGLDSSTTYQIVNSLRQ 370
+ L +DE + GL+ T ++ +R+
Sbjct: 159 ATDPKLLLLDEPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 63/271 (23%), Positives = 101/271 (37%), Gaps = 81/271 (29%)
Query: 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAG--KLGKDLKFSGRVTYNGH---- 219
L D+S I +T L+GP GK+TLL L L G V +G
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 220 ------------GMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQE 267
GM V Q+ + + ++ + +A+ R G+ + +E
Sbjct: 72 LDVDVLELRRRVGM---VFQKPNPF---------PGSIYDNVAYGLRLHGIKLK----EE 115
Query: 268 LSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327
L R + A ++ A+L + K+ L LGL S
Sbjct: 116 LDERVEEA-----------LRKAALWDEVKD-----RLHALGL----------------S 143
Query: 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQI---VNSLRQSIHILNGTAVI--- 381
GGQ++RL L L +DE ++ LD +T +I + L++ T VI
Sbjct: 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIVTH 198
Query: 382 SLLQPAPETYELFDDLILLSDGQIVYQGPRE 412
++ Q A + D L +G++V GP E
Sbjct: 199 NMQQAA----RVADRTAFLLNGRLVEFGPTE 225
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 2e-09
Identities = 55/269 (20%), Positives = 99/269 (36%), Gaps = 49/269 (18%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP- 226
T+L D+S I+ L L+G GKTTLL A+AG + +GR+ + P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 227 QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
+R A + QN + V + +AF R +++ A+I
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR--------------AQKMPKADI--------- 114
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
V D LK++GL + +SGG ++R+ +
Sbjct: 115 ----------AERVAD-ALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406
L +DE + LD++ + + L ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 407 YQGPRENVLEFFERMGFKCPERKGVADFL 435
G + + + P A+FL
Sbjct: 219 AHGEPQAL--------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 61/240 (25%), Positives = 97/240 (40%), Gaps = 44/240 (18%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP- 226
T L D++ I +LLGP GKTT L +AG SGR+ G + + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 227 QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
R A + QN MTV + +AF + + V E+ R
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD-----EIDER--------------- 110
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
V + V ++L +E + D + +SGGQR+R+ G +V +
Sbjct: 111 -------------VRE-VAELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406
MDE + LD+ Q+ L++ + GT I + E + D + +++DGQI
Sbjct: 152 FLMDEPLSNLDAKLRVQMRAELKR-LQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 63/241 (26%), Positives = 113/241 (46%), Gaps = 31/241 (12%)
Query: 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 897
+I FD++ Y +G P + + + V+ F G A++G +G+GK+TL+ +
Sbjct: 2 TIRFDNVSYTYQ-------KGTPYEH-QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNI 53
Query: 898 AG--RKTGGYVS-GSITISGYPKNQE--TFARISGYCEQTDIHSPHVTVYESLVYSAWLR 952
+ T G V+ ITI+ K++ + G Q P ++E V +
Sbjct: 54 NALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQF----PESQLFEDTVEREIIF 109
Query: 953 LPPEVDSDTRKMFVEEVME-----LVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVA 1007
P KM ++EV L++L R+ + P +S Q +++ I L
Sbjct: 110 GPKNF-----KMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSILAM 162
Query: 1008 NPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066
NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+++MK
Sbjct: 163 NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221
Query: 1067 G 1067
G
Sbjct: 222 G 222
|
Length = 286 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA---RISGYCEQTD 933
G + A+MG SGAGK+TL++++AG SGSI ++ ++ A R Q +
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVND--QSHTGLAPYQRPVSMLFQEN 79
Query: 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993
H+TV +++ L L P + + + E+V++ + I + L LP LS
Sbjct: 80 NLFAHLTVRQNIG----LGLHPGLKLNAEQQ--EKVVDAAQQVGIADYLDRLPE--QLSG 131
Query: 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1051
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQ 919
D G+S G + G +G+GKTTL+ +LAG +G + ++G P +
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRVLLNGGPLDF 66
Query: 920 E--TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
+ + AR Y ++V E+L + + + VEE + V LN
Sbjct: 67 QRDSIARGLLYLGHAPGIKTTLSVLENL---RFWH--ADHSDEQ----VEEALARVGLNG 117
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
+ V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 118 FEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 1038 DTGRTVVCTIHQP 1050
G VV T HQ
Sbjct: 173 ARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 67/279 (24%), Positives = 108/279 (38%), Gaps = 73/279 (26%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLK-FSGRVTYNG- 218
+ + + DVS ++P + ++G SGK+TL LAL G L + + SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 219 -------HGMEEFVPQRTSAYISQ------NDLHIGEMTVRETLAFSARCQGVGPRYEVL 265
M + +R A I Q N + MT+ + + + R G G R E
Sbjct: 76 DLLGLSEREMRKLRGKRI-AMIFQDPMTSLNPV----MTIGDQIREALRLHGKGSRAE-- 128
Query: 266 QELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325
R++A + L+ +GL D D
Sbjct: 129 ----ARKRAVEL---------------------------LEQVGLP---DPERRDRYPHQ 154
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGT------- 378
+SGG R+R+ L + L DE +T LD +T QI++ L+ L
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214
Query: 379 -AVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416
V++ EL D ++++ G+IV GP E +L
Sbjct: 215 LGVVA---------ELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 31/180 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L+ VS PG L+G +GAGK+TL+ +LAG SG +T PK R+
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD--SGEVTR---PKG----LRV- 68
Query: 927 GYCEQTDIHSPHVTVYESLV--YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL-- 982
GY Q P TV + ++ + L E++ + + L EL + E L
Sbjct: 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDG 128
Query: 983 -------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD +
Sbjct: 129 WTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 30/209 (14%)
Query: 881 ALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP---KNQETFARISGYCEQT---DI 934
A++G +GAGK+TL G SGS+ I G P +N + G Q I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 935 HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994
SP TV + + + + +D +T V + ++ L +R+ + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1053
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ---- 197
Query: 1054 IFDAFDELLLMKRGGEEIYVGPLGRHCSQ 1082
L L+ + IYV GR +
Sbjct: 198 -------LDLVPEMADYIYVMDKGRIVAY 219
|
Length = 277 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 63/244 (25%), Positives = 95/244 (38%), Gaps = 45/244 (18%)
Query: 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM--EEFVPQRT 229
VS ++ + LLGP +GKTT + L L SGR T GH + E +R
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRR 74
Query: 230 SAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKA 289
+ Q+ E+T E L AR GV P E RRE+
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGV-PGAE------RRERI--------------- 112
Query: 290 ASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFM 349
D +L +GL D +++ SGG R+RL LV LF+
Sbjct: 113 ------------DELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFL 155
Query: 350 DEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
DE + GLD T + + + + G ++ E +L D + ++ G+I+ +G
Sbjct: 156 DEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
Query: 410 PREN 413
E
Sbjct: 215 TPEE 218
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 61/249 (24%), Positives = 98/249 (39%), Gaps = 45/249 (18%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH--GMEEFV 225
IL D+S + P ++GP +GKTTLL L G+ SG VT G G E +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETI 101
Query: 226 P--QRTSAYIS---QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPD 280
++ +S + E TVR+ + S +G Y+
Sbjct: 102 FELRKRIGLVSSELHERFRVRE-TVRDVVL-SGFFASIG-IYQ----------------- 141
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
L ++ L++LG + AD G +S G+++R+ L
Sbjct: 142 ---------EDLTAEDLAAAQWL-LELLGAKHLADRPFGS-----LSQGEQRRVLIARAL 186
Query: 341 VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400
V L +DE + GLD Q++N L + A++ + A E F +LL
Sbjct: 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246
Query: 401 SDGQIVYQG 409
+G++V QG
Sbjct: 247 KEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 62/266 (23%), Positives = 101/266 (37%), Gaps = 69/266 (25%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF--- 224
IL V + + +LG SGK+TLL + G L D G + +G + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 225 ----VPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPD 280
+ +R Q L +TV E +AF P E + L +
Sbjct: 79 ELYEIRKRMGVLFQQGAL-FSSLTVFENVAF--------PLREHTK-LPESLIRELV--- 125
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
+MK L+++GL D +SGG RKR
Sbjct: 126 -----LMK----------------LELVGL----RGAAADLYPSELSGGMRKR------- 153
Query: 341 VGPARA-------LFMDEISTGLD--SSTTY-QIVNSLRQSIHILNGTAVISLLQPAPET 390
V ARA LF+DE ++GLD S+ +++ L ++ G VI +
Sbjct: 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL----GLTVIMVTHDLDSL 209
Query: 391 YELFDDLILLSDGQIVYQGPRENVLE 416
+ D + +L+DG+++ +G E +L
Sbjct: 210 LTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 6e-09
Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 60/222 (27%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
LK ++ G L A++G G+GK++L+ L G K SGS+++ G
Sbjct: 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL----SGSVSVPG---------S 67
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDT-----------RKMFVEEVMELV 973
I+ Y Q W++ + T + E+V++
Sbjct: 68 IA-YVSQE----------------PWIQ------NGTIRENILFGKPFDEERYEKVIKAC 104
Query: 974 ELNPIREAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-A 1025
L P E L +G G++ LS Q++R+++A + ++ I +D+P S +DA
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 1026 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
I + + +T + HQ + + D+++++ G
Sbjct: 164 RHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-09
Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 25/221 (11%)
Query: 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSI-------TISGYPKNQ 919
VS + G + ++G SGAGKTTL ++AG T G V+ + T G P +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PDGR 360
Query: 920 ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
R G Q PH TV ++L + L LP E+ K + M +
Sbjct: 361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA--RMKAVITLKMVGFDEEKAE 418
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-- 1037
E L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 419 EILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSILK 472
Query: 1038 ---DTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075
+ +T + H + D D LM R G+ + +G
Sbjct: 473 AREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 6e-09
Identities = 49/214 (22%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYVSGSITISG---YPKNQE 920
+ GVS + G + ++G SG+GK+ L + G + V G I G +++
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80
Query: 921 TFARISG----YCEQTDIHS--PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE 974
+I G Q + S P +T+ + + L + ++ E++ELV
Sbjct: 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKER-AIELLELVG 139
Query: 975 LNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
+ L P LS R+R+ IA+ L NP ++ DEPT+ LD A ++ ++
Sbjct: 140 IPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLK 197
Query: 1035 NTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ G ++ H + + + D + +M G
Sbjct: 198 ELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-09
Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 45/213 (21%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV----SGSITISGY- 915
++++E LKG+S G + A++G SG+GK+TLM++L G + SG+ ++G
Sbjct: 18 EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL------GCLDKPTSGTYRVAGQD 71
Query: 916 --PKNQETFARIS----GYCEQTDIHSPHVTVYESL----VYSAWLRLPPEVDSDTRKMF 965
+ + A++ G+ Q H+T +++ VY+ ++ R +
Sbjct: 72 VATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG-------LERKQRLLR 124
Query: 966 VEEVM------ELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019
+E++ + VE P S LS Q++R++IA L+ +I DEPT
Sbjct: 125 AQELLQRLGLEDRVEYQP-----------SQLSGGQQQRVSIARALMNGGQVILADEPTG 173
Query: 1020 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1052
LD+ + VM + D G TV+ H P +
Sbjct: 174 ALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 7e-09
Identities = 66/281 (23%), Positives = 100/281 (35%), Gaps = 76/281 (27%)
Query: 158 HVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217
+ + + + DVS ++ L+G SGK+TL LAG L SG + ++
Sbjct: 295 GLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFD 351
Query: 218 GHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGV--------GPRYEVLQELS 269
G ++T E R Q V PR V L+
Sbjct: 352 GQ--------------------DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILA 391
Query: 270 RREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGG 329
+ G E+ +L+++GL D +SGG
Sbjct: 392 EP--------------LRIHGGGSGAERRARVAELLELVGL----PPEFLDRYPHELSGG 433
Query: 330 QRKRLTTGEMLVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAV-I 381
QR+R V ARAL +DE + LD S Q++N L+ L T + I
Sbjct: 434 QRQR-------VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI 486
Query: 382 S-----LLQPAPETYELFDDLILLSDGQIVYQGPRENVLEF 417
S + A D + ++ DG+IV +GP E V E
Sbjct: 487 SHDLAVVRYIA-------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-09
Identities = 74/272 (27%), Positives = 111/272 (40%), Gaps = 74/272 (27%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220
P +KKP IL +S ++ ++GP SGK+TL L G SG V +G
Sbjct: 345 PGQKKP--ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW---PPTSGSVRLDGAD 399
Query: 221 MEEFVPQRTSAYISQNDL--HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI- 277
+ ++ + L HIG + Q V EL A NI
Sbjct: 400 LRQW---------DREQLGRHIGYLP-----------QDV--------ELFDGTIAENIA 431
Query: 278 --KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLT 335
+ D + +++AA L G V + IL L DT +G+ +SGGQR+R
Sbjct: 432 RFGEEADPEKVIEAARLAG-----VHEL---ILRLPQGYDTRIGEGG-ATLSGGQRQR-- 480
Query: 336 TGEMLVGPARALF-------MDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI-----SL 383
+ ARAL+ +DE ++ LDS + ++ + GT V+ S
Sbjct: 481 -----IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAI-LAAKARGGTVVVIAHRPSA 534
Query: 384 LQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
L D +++L DG+I GPRE VL
Sbjct: 535 LASV-------DKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-09
Identities = 72/297 (24%), Positives = 118/297 (39%), Gaps = 53/297 (17%)
Query: 123 FEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRL 182
FE L+ E E L G + + +V S +L D+S I+P
Sbjct: 306 FELLDEEPEVEDPPDPLKDT--------IGSIEFENVSFSYPGKKPVLKDISFSIEPGEK 357
Query: 183 TLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH---GMEEFVPQRTSAYISQNDLH 239
++GP SGK+TL+ L SG + +G + ++ +SQ+ L
Sbjct: 358 VAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414
Query: 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNV 299
T+RE +A G +E+ K AN + I
Sbjct: 415 FSG-TIRENIAL-------GRPDATDEEIEEALKLANAH-----EFIAN----------- 450
Query: 300 VTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSS 359
L DT+VG E +SGGQR+RL L+ L +DE ++ LD+
Sbjct: 451 ----------LPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE 499
Query: 360 TTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416
T I ++L++ + T +I + + T + D +I+L +G+IV +G E +L
Sbjct: 500 TEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLDNGRIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 61/249 (24%), Positives = 99/249 (39%), Gaps = 61/249 (24%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM--EEFV 225
+L D+S +K + LGP +GKTT + + G + D SG +T++G
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 226 PQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
+R A I + +T RE L AR G+
Sbjct: 71 LRRIGALIEAPGFY-PNLTARENLRLLARLLGIR-------------------------- 103
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
+K + D VL ++GL+ A V G S G ++RL L+G
Sbjct: 104 ----------KKRI--DEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPD 146
Query: 346 ALFMDEISTGLDSSTTYQIVNSLRQSIHILN---GTAVIS--LLQPAPETYELFDDLILL 400
L +DE + GLD + LR+ I L T +IS LL E ++ D + ++
Sbjct: 147 LLILDEPTNGLDP----DGIKELRELILSLRDQGITVLISSHLLS---EIQKVADRIGII 199
Query: 401 SDGQIVYQG 409
+ G+++ +G
Sbjct: 200 NKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 8e-09
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 25/202 (12%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG--------- 914
E LKGVS G + +++G SG+GK+T + + + +GSI ++G
Sbjct: 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEIRLKRDK 76
Query: 915 ----YPKNQETFARIS---GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVE 967
P ++ R+ G Q H+TV E+++ P V ++ +E
Sbjct: 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVI-----EAPVHVLGVSKAEAIE 131
Query: 968 EVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
+ + I E P + LS Q++R+ IA L P ++ DEPTS LD
Sbjct: 132 RAEKYLAKVGIAEKADAYP--AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVG 189
Query: 1028 IVMRTVRNTVDTGRTVVCTIHQ 1049
V++ +++ + GRT+V H+
Sbjct: 190 EVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 54/242 (22%), Positives = 85/242 (35%), Gaps = 68/242 (28%)
Query: 185 LLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE----------FVPQRTSAYIS 234
LGP +GKTT + L L SG G+ + VPQ S
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE- 79
Query: 235 QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEG 294
++T RE L R G+ P+ E E+A
Sbjct: 80 -------DLTGRENLEMMGRLYGL-PKDE------AEERAEE------------------ 107
Query: 295 QEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEIST 354
+L++ L D + SGG R+RL L+ LF+DE +T
Sbjct: 108 ---------LLELFEL-----GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 355 GLDSST---TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPR 411
GLD T + + +L++ G ++ E +L D + ++ G+I+ +G
Sbjct: 154 GLDPRTRRAIWDYIRALKEE-----GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTP 208
Query: 412 EN 413
E
Sbjct: 209 EE 210
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 64/255 (25%), Positives = 93/255 (36%), Gaps = 52/255 (20%)
Query: 185 LLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTS-AYISQNDLHIGEM 243
LLGP GKTTLL LAG D SG + +G + P + Q+ M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDY 303
TV E +AF + + V A IKP
Sbjct: 58 TVEENVAFGLKMRKVP--------------RAEIKPR----------------------- 80
Query: 304 VLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQ 363
VL+ L L V + D +SGGQ++R+ LV + L +DE + LD Q
Sbjct: 81 VLEALRL-VQLEEF-ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQ 138
Query: 364 IVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGF 423
+ L+ L G + + E + D + ++ G+I G E + E
Sbjct: 139 MQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE------- 190
Query: 424 KCPERKGVADFLQEV 438
P VA F+ E+
Sbjct: 191 -EPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFA 923
L VS + G + AL+G +G+GK+TL+ +AG SG I I G + E
Sbjct: 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEELR 72
Query: 924 RISGYCEQ 931
R GY Q
Sbjct: 73 RRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 69/268 (25%)
Query: 163 RKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME 222
KKP +L D++ IKP ++GP +GKTTL+ L ++F Y+
Sbjct: 14 EKKP--VLKDINFSIKPGETVAIVGPTGAGKTTLINLL-------MRF-----YD----- 54
Query: 223 EFVPQRTSAYISQNDLH-IGEMTVRETLAFSARCQGVGPRYEVLQE--LSRREKAANIK- 278
PQ+ I D+ I ++R + VLQ+ L NI+
Sbjct: 55 ---PQKGQILIDGIDIRDISRKSLRSMIGV------------VLQDTFLFSGTIMENIRL 99
Query: 279 --PDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG--ISGGQRKRL 334
P+ + +++AA G D+++K L DT++G+ G +S G+R+ L
Sbjct: 100 GRPNATDEEVIEAAKEAG-----AHDFIMK---LPNGYDTVLGE---NGGNLSQGERQLL 148
Query: 335 TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI------SLLQPAP 388
++ + L +DE ++ +D+ T I +L + ++ G I S ++ A
Sbjct: 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSIIIAHRLSTIKNA- 204
Query: 389 ETYELFDDLILLSDGQIVYQGPRENVLE 416
D +++L DG+I+ +G + +L
Sbjct: 205 ------DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 47/243 (19%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK----DLKFSGRVTYNGHGMEEF 224
+L D++ I P + +L GP SGKTT LL L G L LK G+ G +E
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQ-ELYGASEKEL 77
Query: 225 VPQRTS-AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
V R + YI Q +G +T R+ + + E+ LS +E
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------ELQPNLSYQEARE-------- 120
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+A + +L+ +GL D + D +SGGQ++R+ LV
Sbjct: 121 ----RARA------------MLEAVGLG---DHL--DYYPHNLSGGQKQRVAIARALVHR 159
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
+ + DE + LDS + +V +++ G ++ ++ ++ D ++ + DG
Sbjct: 160 PKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVADRIVHMEDG 217
Query: 404 QIV 406
+++
Sbjct: 218 KLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 2e-08
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG--YPKNQETFARISGYCEQ 931
F +TA +G +GAGKTT + +L G SG++ + G N + + G C Q
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKDIETNLDAVRQSLGMCPQ 1010
Query: 932 TDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991
+I H+TV E +++ A L+ + ++ +E ++E L+ R L
Sbjct: 1011 HNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE-----EAQDL 1062
Query: 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCTIH 1048
S +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ + H
Sbjct: 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMSTH 1118
Query: 1049 Q 1049
Sbjct: 1119 H 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
LKGV+ + G +L+G SG GK+TL+++++G SG + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPGPDRMV 58
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
+ Q P +TV E+ + A R+ P++ R+ VEE + LV L EA P
Sbjct: 59 VF--QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVGL---TEAADKRP 112
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
G LS ++R+ IA L P ++ +DEP LDA
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-08
Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 50/246 (20%)
Query: 838 SITFDDI--RYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMD 895
I F ++ RY ++P LK +S + +PG ++G +G+GK++L
Sbjct: 2 DIEFKNVSLRYRPNLPPV-------------LKNISFSIKPGEKVGIVGRTGSGKSSL-- 46
Query: 896 VLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY--ESLVYSAWLRL 953
+LA + SGSI I G IS D+ S +++ + +++S +R
Sbjct: 47 LLALFRLVELSSGSILIDGVD--------ISKIGLH-DLRS-RISIIPQDPVLFSGTIRS 96
Query: 954 ---PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV---------SGLSTEQRKRLTI 1001
P SD EE+ + +E ++E + LPG LS QR+ L +
Sbjct: 97 NLDPFGEYSD------EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCL 150
Query: 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061
A L+ I+ +DE T+ +D A++ +T+R TV+ H+ +D D +
Sbjct: 151 ARALLRKSKILVLDEATASVDPETDALIQKTIR-EAFKDCTVLTIAHR--LDTIIDSDRI 207
Query: 1062 LLMKRG 1067
L++ +G
Sbjct: 208 LVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITISG---YP 916
LKG+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 917 KNQET--FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE 974
K + + G Q P +++E++ Y LR+ D+ + VEE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 975 L-----NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
L + ++E+ L G Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 132 LWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 61/250 (24%), Positives = 95/250 (38%), Gaps = 57/250 (22%)
Query: 162 SRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221
S KK IL D+S + + L G +GKTTL LAG L K + SG + NG +
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIK--ESSGSILLNGKPI 64
Query: 222 EEFVPQRTSAYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPD 280
+ +++ Y+ Q+ D + +VRE L +
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLK-------------------------- 98
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
E N + VLK L L + +SGGQ++RL L
Sbjct: 99 ------------ELDAGNEQAETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAAL 141
Query: 341 VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF----DD 396
+ L DE ++GLD Y+ + + + I L ++ YE D
Sbjct: 142 LSGKDLLIFDEPTSGLD----YKNMERVGELIRELAAQGKAVIV--ITHDYEFLAKVCDR 195
Query: 397 LILLSDGQIV 406
++LL++G IV
Sbjct: 196 VLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 53/270 (19%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP- 226
T + D+S IK LLGP GKTTLL +AG SG + +G + + VP
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD-VPP 74
Query: 227 -QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
+R + Q+ MTV E +AF + + + E+ +
Sbjct: 75 EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEE--------------- 119
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
L+++GLE AD +SGGQ++R+ LV +
Sbjct: 120 ------------------ALELVGLEGFADRKPHQ-----LSGGQQQRVALARALVPEPK 156
Query: 346 ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405
L +DE + LD+ Q+ L++ L T V + E + D + +++DG+I
Sbjct: 157 VLLLDEPLSALDAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDGRI 215
Query: 406 VYQGPRENVLEFFERMGFKCPERKGVADFL 435
G E + ++ P + VADF+
Sbjct: 216 EQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 18/177 (10%)
Query: 882 LMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG-------YPKNQETFA--RISGYCEQT 932
L+G SGAGK++L+ VL + SG++ I+G P ++ R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
Query: 933 DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992
PH+TV E+L+ + P V ++ + +L++ ++ P LS
Sbjct: 91 YNLWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLS 143
Query: 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI 381
+ +SGGQR+R+ L+ L +DE ++GLD ++ +++ LR+ G VI
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE--LAEEGRTVI 134
Query: 382 SLLQPAPETYELFDDLILLSDGQ 404
+ D +I+L DG+
Sbjct: 135 IVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 4e-08
Identities = 62/263 (23%), Positives = 110/263 (41%), Gaps = 68/263 (25%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKF----SGRVTY 216
PSR + IL +S I P + L+G GK+T++ L +F SG +
Sbjct: 11 PSRPD-VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL-------ERFYDPTSGEILL 62
Query: 217 NGHGMEEFVPQRTS---AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREK 273
+G + + + +SQ + + + T+ E + + G +E+ K
Sbjct: 63 DGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRY-------GKPDATDEEVEEAAK 114
Query: 274 AANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG--ISGGQR 331
ANI D IM SL Y DT+VG+ RG +SGGQ+
Sbjct: 115 KANIH-----DFIM---SLPDG-------Y-----------DTLVGE---RGSQLSGGQK 145
Query: 332 KRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI-----SLLQP 386
+R+ L+ + L +DE ++ LD+ + + +L ++ + T ++ S ++
Sbjct: 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAHRLSTIRN 203
Query: 387 APETYELFDDLILLSDGQIVYQG 409
A D + +L +GQ+V QG
Sbjct: 204 A-------DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 48/180 (26%), Positives = 74/180 (41%), Gaps = 20/180 (11%)
Query: 876 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTD-- 933
G L L+G +GAGKTTL+ + G G++ ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGKGW--RHIGYVPQRHEF 60
Query: 934 -----IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988
I H + + WLR P D V + + V L + + VG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPVG---- 112
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++ T H
Sbjct: 113 -ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 25/217 (11%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPK 917
PD LK VS + G A++G +G+GK+TL +L G +G+IT+ G
Sbjct: 16 PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVL 71
Query: 918 NQETF----ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV 973
++ET ++ + D TV + + + E R+ VE V + +
Sbjct: 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQAL 125
Query: 974 ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1033
+ + L P LS Q++R+ IA L P II +DE TS LD R V+ TV
Sbjct: 126 RQVGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV 183
Query: 1034 RNTVDTGR-TVVCTIHQPSIDIFDAF--DELLLMKRG 1067
R + TV+ H D+ +A D +++M +G
Sbjct: 184 RQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYVSGSITISGYPKN 918
LK ++ +TAL+G SG GK+TL+ D++ G R G + I +
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NP 977
R G Q P +++Y+++ Y RL D VEE ++ L +
Sbjct: 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAALWDE 133
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
+++ L GLS Q++RL IA L P ++ +DEPTS LD A
Sbjct: 134 VKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 63/257 (24%), Positives = 100/257 (38%), Gaps = 51/257 (19%)
Query: 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTS- 230
DVS + P + ++G SGK+TLL LAG+L D G TY E + S
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSE 77
Query: 231 -----------AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKP 279
++ QN M V R +G R+
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHY---------------- 121
Query: 280 DPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEM 339
G + D++ ++ E+ + D++ R SGG ++RL
Sbjct: 122 --------------GNIRATAQDWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIARN 162
Query: 340 LVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399
LV R +FMDE + GLD S ++++ LR + L G AVI + L L++
Sbjct: 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL-GLAVIIVTHDLGVARLLAQRLLV 221
Query: 400 LSDGQIVYQGPRENVLE 416
+ G++V G + VL+
Sbjct: 222 MQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 59/250 (23%), Positives = 97/250 (38%), Gaps = 66/250 (26%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRT 229
L ++ I L+GP +GK+TLL + ++L SG + NG + + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLI---YKEELPTSGTIRVNGQDVSDL-RGRA 72
Query: 230 SAYISQNDLHIG----------EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKP 279
Y+ + IG + V E +AF+ GV PR E+ +R AA
Sbjct: 73 IPYLRR---KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA---- 120
Query: 280 DPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEM 339
L+++GL + +SGG+++R+
Sbjct: 121 -------------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARA 150
Query: 340 LVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD--- 396
+V L DE + LD TT++I+N L + I+ T V+ A EL D
Sbjct: 151 IVNSPTILIADEPTGNLDPDTTWEIMN-LLKKINKAGTTVVV-----ATHAKELVDTTRH 204
Query: 397 -LILLSDGQI 405
+I L G++
Sbjct: 205 RVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 71/300 (23%), Positives = 117/300 (39%), Gaps = 79/300 (26%)
Query: 147 ANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK 206
MLE + LHV KK IL V+ +K + ++GP SGK+TL + G
Sbjct: 1 MMMLE--IKDLHVEVEGKKE--ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56
Query: 207 DLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE------TLAFS--ARCQGV 258
++ G + ++G ++ I E++ E LAF GV
Sbjct: 57 EVT-EGEILFDG----------------ED---ILELSPDERARAGIFLAFQYPVEIPGV 96
Query: 259 GPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318
+ ++ R A I P+ I + + A ++LGL+
Sbjct: 97 TNSDFLRAAMNARRGARGILPE-FIKELKEKA---------------ELLGLD------- 133
Query: 319 GDEMLR-----GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQI---VNSLRQ 370
+E L G SGG++KR ++L+ + +DE +GLD + +N+LR+
Sbjct: 134 -EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE 192
Query: 371 SIHILNGTAVISLLQPAPETYELFDDLI-----LLSDGQIVYQGPRENVLEFFERMGFKC 425
G +I+ Q L D + +L DG+IV G E + E E G+
Sbjct: 193 EG---RGVLIITHYQ------RLLDYIKPDKVHVLYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 43/193 (22%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-- 226
+L +V+ I + L+GP GK+TLL + G L +G + N ++ +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 227 QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
QR + Q+ L ++V + L F+
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFAL--------------------------------- 102
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
A+L+G + + L+ GL + +SGGQR R+ L+ +A
Sbjct: 103 --PATLKGNARRNAANAALERSGL-----DGAFHQDPATLSGGQRARVALLRALLAQPKA 155
Query: 347 LFMDEISTGLDSS 359
L +DE + LD +
Sbjct: 156 LLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-08
Identities = 58/264 (21%), Positives = 97/264 (36%), Gaps = 63/264 (23%)
Query: 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF 224
+ L + + + +LG SGK+TLL LAG G +T NG +
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASL 405
Query: 225 VPQ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
Q T + ++Q +H+ T+R+ L R + D
Sbjct: 406 DEQALRETISVLTQ-RVHLFSGTLRDNL---------------------RLANPDAS-DE 442
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
++ ++ LE + +T +G E R +SGG+R+RL L+
Sbjct: 443 ELWAALQQVGLEKL-----------LESAPDGLNTWLG-EGGRRLSGGERRRLALARALL 490
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSI---------HILNGTAVISLLQPAPETYE 392
A +DE + GLD T Q++ L + H L G E
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGL-------------E 537
Query: 393 LFDDLILLSDGQIVYQGPRENVLE 416
D +I+L +G+I+ +G +L
Sbjct: 538 RMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 5e-08
Identities = 57/283 (20%), Positives = 103/283 (36%), Gaps = 69/283 (24%)
Query: 157 LHV-LPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKF--SGR 213
L V P+ + + VS +K + ++G SGK+ L A+ G L K G
Sbjct: 7 LSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 214 VTYNGHGMEEFVPQRTS-------AYISQNDLH-------IGEMTVRETLAFSARCQGVG 259
+ ++G + + A I Q+ + IG+ + E L
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGD-QIAEVLR---LHGKGL 122
Query: 260 PRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319
+ E + + I PD + +K+ E
Sbjct: 123 SKKEAKERAIELLELVGI---PDPERRLKSYPHE-------------------------- 153
Query: 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTA 379
+SGG R+R+ L + L DE +T LD + QI++ L++ + GTA
Sbjct: 154 ------LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQREKGTA 206
Query: 380 VI------SLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416
+I ++ E+ D + ++ G+IV +GP E + +
Sbjct: 207 LILITHDLGVV------AEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 870 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYVSGSITISG---YPKNQETFA 923
V+ P +TA +G SG GK+T++ L G V G + + G Y + A
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 924 --RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NPIRE 980
R G Q P +++ +++V A L+L + VE+ + L N +++
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD 140
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 141 RL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYVSGSITISGYPKN 918
L ++ + +TAL+G SG GK+TL+ D++ G R TG + I +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NP 977
R G Q P ++YE++ Y R+ E + T VE+ ++ L +
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALWDE 138
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
+++ L LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 139 VKDRL--HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 34/207 (16%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
LT ++DVS ++P + L+GP +GKTTL + G SG V + G + P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 227 -QRTSAYIS---QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD 282
+ I+ Q +TV E +A A + + E+ A
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR------ 127
Query: 283 IDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG 342
+A L L+ +GL AD G+ +S GQ++RL L
Sbjct: 128 ----ERAREL------------LEFVGLGELADRPAGN-----LSYGQQRRLEIARALAT 166
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLR 369
+ L +DE + GL+ T ++ +R
Sbjct: 167 QPKLLLLDEPAAGLNPEETEELAELIR 193
|
Length = 250 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 55/258 (21%), Positives = 97/258 (37%), Gaps = 53/258 (20%)
Query: 157 LHVLPSRK--KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRV 214
L V K +T L D+S ++ + LLGP +GKTT + + G + D SG V
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEV 57
Query: 215 TYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKA 274
++G ++ + Y+ + +M V + L + A+ +G L + E
Sbjct: 58 LFDGKPLD-IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG----------LKKEEAR 106
Query: 275 ANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRL 334
I D L+ L L A+ + + +S G ++++
Sbjct: 107 RRI------------------------DEWLERLELSEYAN-----KRVEELSKGNQQKV 137
Query: 335 TTGEMLVGPARALFMDEISTGLDSSTT---YQIVNSLRQSIHILNGTAVISLLQPAPETY 391
++ L +DE +GLD ++ L + G VI
Sbjct: 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-----AGKTVILSTHQMELVE 192
Query: 392 ELFDDLILLSDGQIVYQG 409
EL D ++LL+ G+ V G
Sbjct: 193 ELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-08
Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 39/225 (17%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ 919
P L +S PG AL+G SG+GK+TL++++ + SG I + G+
Sbjct: 341 PGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLAD 398
Query: 920 ETFARISGYCEQTDIHSPHV-----TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE 974
T A + Q + S V T+ ++ Y + D E+ +
Sbjct: 399 YTLASLR---RQVALVSQDVVLFNDTIANNIAYGR----TEQADR-------AEIERALA 444
Query: 975 LNPIREALVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025
++ + LP G +G LS QR+RL IA L+ + I+ +DE TS LD +
Sbjct: 445 AAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504
Query: 1026 AAIVMRTVRNTVD---TGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
R V+ ++ GRT + H+ S I A D +++M G
Sbjct: 505 E----RLVQAALERLMQGRTTLVIAHRLST-IEKA-DRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 31/228 (13%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYVSGSITISG---YPKN 918
+KGV + ALMG SG GK+TL+ + L V G + + G Y +
Sbjct: 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 919 QETFA--RISGYCEQTDIHSPHVTVYES----LVYSAWLRLPPEVDSDTRKMFVEEVMEL 972
+ R G Q PH+T+Y++ + + ++ E+D VE ++
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDE-----RVEWALKK 132
Query: 973 VEL-NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
L + +++ L P S LS QR+RL IA L P I+ MDEPT+ +D A +
Sbjct: 133 AALWDEVKDRLNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190
Query: 1032 TVRNTVDTGRTVVCTIHQPS----IDIFDAFDELLLMKRGGEEIYVGP 1075
+ + T+V H P+ + + AF L G+ I VGP
Sbjct: 191 LLFE-LKKEYTIVLVTHSPAQAARVSDYVAFLYL------GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 56/213 (26%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV--SGSITISGYPK 917
P+ + LK +S + G AL+G SG+GK+TL+ +L TG G IT+ G P
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL----TGDLKPQQGEITLDGVP- 65
Query: 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP--PEVDSDTRKMFVEEVMELVEL 975
V+ E + S L P + T
Sbjct: 66 ---------------------VSDLEKALSSLISVLNQRPYLFDTT-------------- 90
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
+R L G S +R+RL +A L+ + I+ +DEPT GLD ++ +
Sbjct: 91 --LRNNL-GRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143
Query: 1036 TVDTGRTVV-CTIHQPSIDIFDAFDELLLMKRG 1067
V +T++ T H I + D++L ++ G
Sbjct: 144 -VLKDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 7e-08
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM---EEF 224
T L D+S ++ + LLGP +GKTTL+ + G L D SG + G + E
Sbjct: 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEE 70
Query: 225 VPQRTSAYISQNDLHIGEMTVRETLAFS 252
V +R Y+ + +TVRE L S
Sbjct: 71 VKRRI-GYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 25/203 (12%)
Query: 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR--ISGYCE 930
G + A++G SGAGK+TL++++AG +T SG I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 931 QTDIHSPHVTVYES--LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988
+ ++ + H+TV ++ L S L+L E ++ VE V L L LPG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNAE-----QREKVEAAAAQVGLA---GFLKRLPGE 129
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVV 1044
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLL 184
Query: 1045 CTIHQPSIDIFDAFDELLLMKRG 1067
H P D D ++ + G
Sbjct: 185 MVTHHPE-DAARIADRVVFLDNG 206
|
Length = 231 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 12/178 (6%)
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS--GSITISGYPKN 918
R L VS + G L+G SG GK+TL +L G + G VS G K
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82
Query: 919 QETFARISGYCEQTDIHS--PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN 976
+ F R Q + P +TV + + LR +D +K + E++++V L
Sbjct: 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLR 140
Query: 977 PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
E LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 141 S--EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 60/233 (25%), Positives = 95/233 (40%), Gaps = 56/233 (24%)
Query: 844 IRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 903
+RYA D+P LK VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 904 GYVSGSITISGYPKNQETFARISGYCEQTDI-HSPHVTVYESL--------VYSAWLRLP 954
G I I G DI P + SL ++S +R
Sbjct: 59 EAEEGKIEIDG-----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRS- 100
Query: 955 PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1014
+ D + +E I AL G LS QR+ L +A L+ P ++ +
Sbjct: 101 ---NLDPFDEYSDE--------EIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVL 149
Query: 1015 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
DE T+ +D A++ +T+R T T++ H+ I D +D++L+M G
Sbjct: 150 DEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 7e-08
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 36/205 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFA 923
L +S + R G A+ G SG GK+TL+ ++A + SG++ G + E +
Sbjct: 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYR 76
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV 983
+ YC QT TV ++L++ +R R ++ + A
Sbjct: 77 QQVSYCAQTPALFGD-TVEDNLIFPWQIR----NRRPDRAAALDLL-----------ARF 120
Query: 984 GLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRTV 1033
LP ++ LS +++R+ + L P I+ +DE TS LD ++ R V
Sbjct: 121 ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180
Query: 1034 RNTVDTGRTVVCTIHQP--SIDIFD 1056
R + V+ H +I D
Sbjct: 181 R---EQNVAVLWITHDKDQAIRHAD 202
|
Length = 223 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYVSGSITISG---YP 916
+ E LKG+ F +TAL+G SG GK+T + L G ++G++++ G Y
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 917 KNQET--FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE 974
N++ + G Q P ++YE+++Y LRL D VE ++
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAA 133
Query: 975 L-NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+ + +++ L LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 134 IWDEVKDHL--HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 59/261 (22%), Positives = 97/261 (37%), Gaps = 65/261 (24%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH------GM 221
L +++ I P ++GP +GK+TLL + + SG + G G
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 222 EEFVPQRTSAYISQNDLHIGEMTVRET-----LAFSARCQGVGPRYEVLQELSRREKAAN 276
+ +R I Q+ I +TV E L + + + L S +K
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSL------LGRFSEEDK--- 123
Query: 277 IKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTT 336
+A S L+ +GL A D++ SGGQ++R
Sbjct: 124 ----------ERALSA------------LERVGLADKAYQRA-DQL----SGGQQQR--- 153
Query: 337 GEMLVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE 389
V ARAL DE LD T+ Q+++ L++ T +I+L Q
Sbjct: 154 ----VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA 209
Query: 390 TYELFDDLILLSDGQIVYQGP 410
+ D ++ L G+IV+ G
Sbjct: 210 K-KYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 870 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP---KNQETFARIS 926
+S R G + L+G +GAGK+TL+ +AG G SGSI +G P + AR
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHR 71
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
Y Q + V++ L L P + ++ + EV E + L+ +G
Sbjct: 72 AYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDD----KLGRS 123
Query: 987 GVSGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVD 1038
V+ LS E QR RL AV L NP+ ++ +DEP + LD A + R +
Sbjct: 124 -VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ 181
Query: 1039 TGRTVVCTIH 1048
G VV + H
Sbjct: 182 QGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 8e-08
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 46/188 (24%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR 924
E L GV+ +TALMG SG+GK+TL+ V + I YP+ AR
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----AR 60
Query: 925 ISG--YCEQTDIHS--------------------PHVTVYESLVYSAWLRLPPEVDSDTR 962
+SG Y + DI P+++++E++ L+L V S +
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKS--K 116
Query: 963 KMFVEEVMELVELNPIREAL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019
K E V +E + + + + P LS Q++RL IA L P ++ DEPT+
Sbjct: 117 KELQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTA 175
Query: 1020 GLDARAAA 1027
LD A
Sbjct: 176 NLDPENTA 183
|
Length = 250 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 9e-08
Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 79/268 (29%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKF----SGRVTYNGHGMEEF 224
+L DVS I + ++GP SGK+T+L L +F SG + +G + E
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL-------FRFYDVSSGSILIDGQDIREV 68
Query: 225 -----------VPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREK 273
VPQ T + ND T+ + + R
Sbjct: 69 TLDSLRRAIGVVPQDTVLF---ND------TIGYNIRYG------------------RPD 101
Query: 274 AANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKR 333
A D ++ KAA + KI+ DT+VG+ L+ +SGG+++R
Sbjct: 102 AT----DEEVIEAAKAAQIHD-----------KIMRFPDGYDTIVGERGLK-LSGGEKQR 145
Query: 334 LTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL 393
+ ++ L +DE ++ LD+ T +I +LR + G I + + L
Sbjct: 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRD---VSKGRTTIVI------AHRL 196
Query: 394 F-----DDLILLSDGQIVYQGPRENVLE 416
D +I+L DG+IV +G E +L
Sbjct: 197 STIVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 9e-08
Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 47/240 (19%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR 228
L D++ ++ L ++LGP GKTTLL +AG + G +T +G +E P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 229 TSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMK 288
+ QN+ + V++ +AF + GV + + R E A ++K
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGV-EKMQ------RLEIAHQ---------MLK 114
Query: 289 AASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348
LEG EK + +SGGQR+R+ L + L
Sbjct: 115 KVGLEGAEKRYIWQ-----------------------LSGGQRQRVGIARALAANPQLLL 151
Query: 349 MDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS--DGQIV 406
+DE LD+ T Q+ L + G V+ + E + +L+LLS G++V
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 9e-08
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 26/217 (11%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
I F+ + +A + A L G++ RPG AL+G SGAGK+TL +L
Sbjct: 338 IEFEQVNFAYPARPDQPA----------LDGLNLTVRPGETVALVGPSGAGKSTLFQLLL 387
Query: 899 GRKTGGYV--SGSITISGYP----KNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLR 952
Y SG I + G E AR++ + + + +V E++ Y
Sbjct: 388 RF----YDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFA--ASVMENIRYGRPDA 441
Query: 953 LPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1012
EV++ R E + L + +G GV+ LS QR+R+ IA ++ + I+
Sbjct: 442 TDEEVEAAARAAHAHEFIS--ALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPIL 498
Query: 1013 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049
+DE TS LDA + +V + + T+ GRT + H+
Sbjct: 499 LLDEATSALDAESEQLVQQAL-ETLMKGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 9e-08
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 35/204 (17%)
Query: 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDI-- 934
G + L+G SG GKTT++ ++AG + G I I G E S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 935 --HS----PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988
S PH+++ E++ Y L++ V + RK V+E +ELV+L + V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1043
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1044 VCTIHQPSIDIFDAFDELLLMKRG 1067
+ H S + F D +++M +G
Sbjct: 191 LYVTHDQS-EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 9e-08
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 26/202 (12%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG---------- 914
E LKGVS G + +++G SG+GK+T + + + GSI ++G
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGSIVVNGQTINLVRDKD 76
Query: 915 -----YPKNQETF--ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVE 967
KNQ R++ + ++ S H+TV E++ + P +V +++ E
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENV-----MEAPIQVLGLSKQEARE 130
Query: 968 EVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
++ + I E G V LS Q++R++IA L P ++ DEPTS LD
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 1028 IVMRTVRNTVDTGRTVVCTIHQ 1049
V+R ++ + G+T+V H+
Sbjct: 190 EVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
T L +VS +K + L+GP SGK+TLL A+AG L SG + +G + + +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLE 69
Query: 228 ---RTSAYISQ 235
R Y+ Q
Sbjct: 70 ELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 61/261 (23%), Positives = 99/261 (37%), Gaps = 57/261 (21%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH------GM 221
L DV+ I + ++GP +GK+TLL +L G + SG + +NG G
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 222 EEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVL-QELSRREKAANIKPD 280
E +R I Q + ++V E + G + L S+ +KA
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKA------ 126
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
+ A L+ +G+ A +SGGQ++R
Sbjct: 127 ----QALDA---------------LERVGILDKAYQRAST-----LSGGQQQR------- 155
Query: 341 VGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL 393
V ARAL DE LD + ++++ L+ I+ +G VI L +
Sbjct: 156 VAIARALVQQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLHQVDLAKKY 214
Query: 394 FDDLILLSDGQIVYQGPRENV 414
D +I L G+IV+ GP +
Sbjct: 215 ADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 47/192 (24%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF--V 225
T+ D+S + + GP +GKTTLL LAG L D +G V + G ++
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 226 PQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
+ Y+ E+T E L F R G G + + L
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEAL----------------- 115
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
V + GLE D + +S GQ++R+ + + PA
Sbjct: 116 ----------------AQV-GLAGLE--------DLPVGQLSAGQQRRVALARLWLSPAP 150
Query: 346 ALFMDEISTGLD 357
+DE T LD
Sbjct: 151 LWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 80/280 (28%), Positives = 128/280 (45%), Gaps = 47/280 (16%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETF--ARISGYCE 930
RP + ALMG +GAGK+TL+ L G +K SGSI G + ++ A +G
Sbjct: 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKEIDFKSSKEALENGI-- 75
Query: 931 QTDIHSPHVTVYE-SLVYSAWL-RLPPE---VD-----SDTRKMFVEEVMEL-VELNPIR 979
+ +H V + S++ + WL R P + VD DT+ +F EL ++++P R
Sbjct: 76 -SMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF----DELDIDIDP-R 129
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
V+ LS Q + + IA N I+ MDEPTS L + + +R +
Sbjct: 130 AK------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER 183
Query: 1040 GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL-GRHCSQLIKYFEGIDGVPKIKE 1098
G +V H+ +IF DE+ ++ R G+ I PL G ++I G + +
Sbjct: 184 GCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPLAGLTMDKIIAMMVGRSLTQRFPD 241
Query: 1099 GYN-PATWMLEV---TTPAQEAALGINFAKVYKNSELYKG 1134
N P +LEV T+ Q + ++F +L+KG
Sbjct: 242 KENKPGEVILEVRNLTSLRQPSIRDVSF-------DLHKG 274
|
Length = 491 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-07
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 38/215 (17%)
Query: 877 GVLTALMGVSGAGKTTLMDVL-------AGRKTGGYVSG-SITISGYPKNQETFARISGY 928
G + +MG+SG+GK+T + +L AG+ ++ G +I + +E + G
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVELREVRRKKIGM 75
Query: 929 CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988
Q PH+T+ ++ L RK E+ +EL++L VGL
Sbjct: 76 VFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL-------VGLEEY 122
Query: 989 SG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1042
LS ++R+ +A L A P I+ MDE S LD + ++ T +T
Sbjct: 123 EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT 182
Query: 1043 VVCTIHQPSIDIFDAF---DELLLMKRGGEEIYVG 1074
+V H D+ +A D +++MK GE + VG
Sbjct: 183 IVFITH----DLDEAIRIGDRIVIMK-AGEIVQVG 212
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 53/212 (25%), Positives = 80/212 (37%), Gaps = 43/212 (20%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG---------- 914
L+G++ RPG + A+MG +G+GK+TL LAGR+ G++ G
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 915 -----------YPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRK 963
YP I G Q + + V R +D +
Sbjct: 75 RAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLDRFDFQ 121
Query: 964 MFVEEVMELVELNP---IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020
+EE + L+++ R VG G ++KR I V P + +DE SG
Sbjct: 122 DLMEEKIALLKMPEDLLTRSVNVGFSG------GEKKRNDILQMAVLEPELCILDESDSG 175
Query: 1021 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1052
LD A IV V + D R+ + H I
Sbjct: 176 LDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 38/160 (23%)
Query: 879 LTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS-- 936
LT L+G SG GKTT++ ++AG +T SG I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 937 ------PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL------NPIREALVG 984
PH+TV+E++ + ++ P + R V E + +V+L P +
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEFAQRKPHQ----- 144
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 ------LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 30/196 (15%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L+ VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP-------- 77
Query: 925 ISGYCEQTDIHSPHVTV-YESLVYSAWLR------LPP----EVDSDTRKMFVEEVMELV 973
IS Y E +HS V E ++++ L+ L V +K + +
Sbjct: 78 ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISEL 136
Query: 974 ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1033
E VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA + V + +
Sbjct: 137 ASGYDTE--VGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193
Query: 1034 RNTVDTGRTVVCTIHQ 1049
+ RTV+ H+
Sbjct: 194 YDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049
GLS Q++R+ IA L P I+ DEPT+GLD + +M+ + + +TV H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 1050 PSIDIFDAFDELLLMKRG 1067
+ + DE+++M +G
Sbjct: 236 ME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 12/162 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSIT-ISGYPKNQ-ETF 922
L VS + + G AL+G SG GK+TL +L G + G VS ++ + Q + F
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 923 ARISGYCEQTDIHS--PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
R Q I + P TV E + LR +D R E++ V+L+
Sbjct: 88 RRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLDD--S 143
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 144 VLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 66/216 (30%)
Query: 848 LDMPQEMKAQGIPDDRLEF-------LKGVSGAFRPGVLTALMGVSGAGKTTLM------ 894
+ P +M+A+G L F L +S F +TAL+G SG GK+T +
Sbjct: 1 MASPPKMEARG-----LSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55
Query: 895 -DVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHV-------------- 939
D++ G + V G I + G +I+ PHV
Sbjct: 56 NDLIPGAR----VEGEILLDG-----------------ENIYDPHVDVVELRRRVGMVFQ 94
Query: 940 -------TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NPIREALVGLPGVSGL 991
+++E++ Y LR+ D VE + L + +++ L GL
Sbjct: 95 KPNPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWDEVKDRLH--ESALGL 150
Query: 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
S Q++RL IA L P ++ MDEP S LD A
Sbjct: 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 970 MELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
+E VE++ R + LP S ++RL IA LV P ++FMDEPT GLD A +
Sbjct: 135 LEEVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 190
Query: 1030 MRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068
+ +R V + G VV H ++ A D L++MK+G
Sbjct: 191 LDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1258 SALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGM 1317
S L Y G+++ +L IQ +I ++++ G L LL L L + G
Sbjct: 135 SPLKYLLGKILGDLLVGLIQLLIILLLLF---GLGIPFGNLLLLLLLFLLYGLAYIALGA 191
Query: 1318 MTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQ 1377
+ ++ N A ++ S +L + F G + P P MP + +W I P + GL+
Sbjct: 192 LLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRII 251
Query: 1378 FG 1379
+G
Sbjct: 252 YG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 34/195 (17%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAGR------KTGGYVSGSITISGYPKN--QETFARIS 926
R G + L+G +G GK+T + +LAG+ K + + + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 927 GYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVDSDTRKM--------FVEEVMELVELNP 977
I P Y L +P V ++ ++E+++ +EL
Sbjct: 84 E--GDVKVIVKPQ---YVDL-------IPKAVKGKVGELLKKKDERGKLDELVDQLELRH 131
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
+ + + LS + +R+ IA L + F DEP+S LD + R +R
Sbjct: 132 VLDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA 186
Query: 1038 DTGRTVVCTIHQPSI 1052
+ V+ H ++
Sbjct: 187 EDDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 48/207 (23%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG----HGMEEF 224
+L ++ + + LLG +GK+TLLL L G L SG V +G + +
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 225 VPQRTS-AYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD 282
+ +R + Q+ D + V + +AF G+ E+ RR + A
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 283 IDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG 342
L + GL + +SGG++KR+ +
Sbjct: 112 ---------LT----------AVGASGLR--------ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLR 369
L +DE + GLD + Q++ LR
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAILR 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 60/247 (24%), Positives = 94/247 (38%), Gaps = 62/247 (25%)
Query: 180 QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG---HGME--EFVP--QRTSAY 232
+ +T L GP SGKT+L+ +AG D GR+ NG E F+P +R Y
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 233 ISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASL 292
+ Q+ TVR L + S+
Sbjct: 81 VFQDARLFPHYTVRGNLRY-----------------------------------GMWKSM 105
Query: 293 EGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEI 352
Q D ++ +LG+E D G +SGG+++R+ G L+ L MDE
Sbjct: 106 RAQ-----FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPELLLMDEP 155
Query: 353 STGLDSSTTYQI---VNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
LD +I + LR I+I ++ + E L D +++L +G++ G
Sbjct: 156 LASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVKASG 211
Query: 410 PRENVLE 416
P E V
Sbjct: 212 PLEEVWG 218
|
Length = 352 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-07
Identities = 70/258 (27%), Positives = 98/258 (37%), Gaps = 70/258 (27%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR 228
IL DVS I+P ++GP SGK+TLL L LG + SG V Y+G +
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQDLA------ 518
Query: 229 TSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMK 288
L + VR L GV VLQ + + I
Sbjct: 519 --------GLDVQA--VRRQL-------GV-----VLQN-------GRLMSGSIFENIAG 549
Query: 289 AASL---EGQEKNVVTDYVLKILGLEVCADTM------VGDEMLRGISGGQRKRLTTGEM 339
A L E E ++ GL M V E +SGGQR+RL
Sbjct: 550 GAPLTLDEAWE-------AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARA 602
Query: 340 LVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI-----SLLQPAPETYELF 394
LV R L DE ++ LD+ T + SL + L T ++ S ++ A
Sbjct: 603 LVRKPRILLFDEATSALDNRTQAIVSESLER----LKVTRIVIAHRLSTIRNA------- 651
Query: 395 DDLILLSDGQIVYQGPRE 412
D + +L G++V QG +
Sbjct: 652 DRIYVLDAGRVVQQGTYD 669
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 60/217 (27%), Positives = 89/217 (41%), Gaps = 52/217 (23%)
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV--SGSITISGYPKNQE 920
RL LK VS G AL G SGAGK+TL+ L Y+ SG I +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSL----YANYLPDSGRILV-------- 67
Query: 921 TFARISGYCEQTDI--HSPHVTVY---ESLVY-SAWLRLPPEVDSDTRKMFVEEVME--- 971
R G D+ SP + +++ Y S +LR+ P V + +E V E
Sbjct: 68 ---RHEG--AWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSA------LEVVAEPLL 116
Query: 972 ----------------LVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1015
L LN I E L LP + S +++R+ IA +A+ I+ +D
Sbjct: 117 ERGVPREAARARARELLARLN-IPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLD 174
Query: 1016 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1052
EPT+ LDA +V+ + G ++ H +
Sbjct: 175 EPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 23/233 (9%)
Query: 870 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARISGY 928
VS G + AL+G SG GK+TL+ +LAG + +G I + G + + R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRPINM 95
Query: 929 CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988
Q+ PH+TV +++ + P+ + +R V E++ LV + +E P
Sbjct: 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASR---VNEMLGLVHM---QEFAKRKP-- 147
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTI 1047
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVT 207
Query: 1048 HQPSIDIFDAFDELLLMKRGG-------EEIYVGPLGRHCSQLI---KYFEGI 1090
H + A + +M RG EEIY P R+ ++ I FEG+
Sbjct: 208 HDQEEAMTMA-GRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGV 259
|
Length = 377 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 32/237 (13%)
Query: 820 NEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVL 879
+ + +R H IT +++ PD + L ++ RPG
Sbjct: 374 EKPARTGRRIDFDDNADHGITLENLSLR-----------TPDGQT-LLSELNFEVRPGER 421
Query: 880 TALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHV 939
+ G SGAGKT+L+ LAG + GS I P + + Q + P
Sbjct: 422 LLITGESGAGKTSLLRALAGL----WPWGSGRI-SMPADSALL-----FLPQRP-YLPQG 470
Query: 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL-PGVSGLSTEQRKR 998
T+ E+L Y P D + V+ V L + E L LS +++R
Sbjct: 471 TLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQR 523
Query: 999 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1055
L A L+ P +F+DE TS LD + + ++ + TV+ H+P++ F
Sbjct: 524 LAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNF 579
|
Length = 604 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 3/197 (1%)
Query: 1180 NPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQP 1239
+ + L+FG G + + + ++ + V +
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 1240 VVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMI---GFDWTVS 1296
A+ R + + S + F + +P++ + ++I G+++ + G + S
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1297 KFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIW 1356
L LL + L L +++ A+ + + + SG P +P W
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAW 227
Query: 1357 WRWYCWICPVSWTLYGL 1373
+ +I P+++ + L
Sbjct: 228 LQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 35/183 (19%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITISG---YP 916
L V +TA +G SG GK+T + D + G + V+G IT+ G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV 973
E AR+ G Q P ++YE++ Y P + R E+ E+V
Sbjct: 91 PRLDVVELRARV-GMVFQKPNPFPK-SIYENVAYG------PRIHGLARSK--AELDEIV 140
Query: 974 ELNPIREAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
E + + L + PG +GLS Q++RL IA + +P +I MDEP S LD A
Sbjct: 141 ETSLRKAGLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT 199
Query: 1027 AIV 1029
A V
Sbjct: 200 AKV 202
|
Length = 267 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 55/258 (21%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYVSGSITISGYPKNQETFA 923
L V+ G TA +G +G+GK+T+M +L G G I+ KN+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK---- 78
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP------ 977
DI V LV+ PE ++F E V++ V P
Sbjct: 79 ---------DIKQIRKKV--GLVFQF-----PE-----SQLFEETVLKDVAFGPQNFGVS 117
Query: 978 -------IREALVGLPGVSG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021
RE L L G+S LS Q +R+ IA L P I+ +DEPT+GL
Sbjct: 118 QEEAEALAREKLA-LVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCS 1081
D + +M + +G T+V H D+ + D + ++++G ++ + +
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG--KLVLSGKPKDIF 233
Query: 1082 QLIKYFEGID-GVPKIKE 1098
Q + + E GVPKI +
Sbjct: 234 QDVDFLEEKQLGVPKITK 251
|
Length = 280 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 25/210 (11%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFA 923
L +SG R G + L+G +GAGK+TL+ +AG +G SGSI +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NPIREAL 982
R Y Q + V+ L TR + +V + L + + +
Sbjct: 72 RHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLNDVAGALALDDKLGRST 123
Query: 983 VGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 1037
L G QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 124 NQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 1038 DTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
G +V + H + + A L+KRG
Sbjct: 180 QQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
T+L D+S I+ + +LGP +GK+TLL LAG L SG + +G + P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 228 ---RTSAYISQ 235
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 51.2 bits (124), Expect = 4e-07
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220
P R KP +L DVS IKP ++GP SGK+TLL L SG + +G
Sbjct: 11 PGRPKP--VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVD 65
Query: 221 MEEFVPQ---RTSAYISQNDLHIGEMTVRE 247
+ + + + AY+ Q+ + T+RE
Sbjct: 66 LRDLDLESLRKNIAYVPQDP-FLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 67/257 (26%), Positives = 104/257 (40%), Gaps = 58/257 (22%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
T ++++S + + LLGP +GK+TLL + G L SG + ++GH
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW------ 64
Query: 228 RTSAYISQNDLH-IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
++ DLH IG + E+ P YE L+ RE N+K
Sbjct: 65 ------TRKDLHKIGSLI--ES----------PPLYE---NLTARE---NLK-------- 92
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
+L G + + D VL I+ L S G ++RL L+ +
Sbjct: 93 -VHTTLLGLPDSRI-DEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALLNHPKL 145
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQSIHIL--NGTAVISLLQPAPETYELFDDLILLSDGQ 404
L +DE + GLD I LR+ I G VI E +L D + ++S+G
Sbjct: 146 LILDEPTNGLDP---IGI-QELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGV 201
Query: 405 IVYQG---PRENVLEFF 418
+ YQG EN+ + F
Sbjct: 202 LGYQGKINKSENLEKLF 218
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 56/254 (22%), Positives = 96/254 (37%), Gaps = 58/254 (22%)
Query: 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE-----FVP 226
D + Q +T + G SGKTTL+ +AG D G + NG + + F+P
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLP 71
Query: 227 --QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
+R Y+ Q ++VR L + + + P
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMK-----------------------RARPS-- 106
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
E+ + + V+++LG+ + G +SGG+++R+ G L+
Sbjct: 107 -----------ERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSP 150
Query: 345 RALFMDEISTGLDSSTTYQIV---NSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401
R L MDE LD Y+I+ L I ++ + E L D +++L
Sbjct: 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGI----PILYVSHSLQEVLRLADRVVVLE 206
Query: 402 DGQIVYQGPRENVL 415
DG++ GP V
Sbjct: 207 DGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 58/281 (20%), Positives = 96/281 (34%), Gaps = 78/281 (27%)
Query: 158 HVLPSRKKPLTILHDVS-GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY 216
V K L++VS I + + L ++ G SGK+TL LAG SG +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIV-GESGSGKSTLARLLAGLEKPS---SGSILL 66
Query: 217 NGHGMEEFVPQRTSAYISQ-------NDLHIGEMTVRETLAFSARCQGVGPRYEVLQELS 269
+G + + Q + L+ TV L+ E L+
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLN-PRRTVGRILS------------EPLRPHG 113
Query: 270 RREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGG 329
+ I + G + + ++ SGG
Sbjct: 114 LSKSQQRIA---------ELLDQVGLPPSFLDRRPHEL-------------------SGG 145
Query: 330 QRKRLTTGEMLVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAV-- 380
QR+R + ARAL +DE ++ LD S QI+N L + T +
Sbjct: 146 QRQR-------IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFI 198
Query: 381 ---ISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFF 418
++L+ + D + ++ +GQIV GP E +L
Sbjct: 199 SHDLALV------EHMCDRIAVMDNGQIVEIGPTEELLSHP 233
|
Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 67/260 (25%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
IL VS + +T +LG GKTTLL L G L +K SG + +G + + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL--PVK-SGSIRLDGEDITKLPPH 70
Query: 228 RTS----AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
+ AY+ Q +TV E N+
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEE----------------------------NLL----- 97
Query: 284 DLIMKAASLEGQEKNVVTD-Y----VLKILGLEVCADTMVGDEML--RG--ISGGQRKRL 334
A+L + + + + Y VLK EML RG +SGGQ+++L
Sbjct: 98 ---TGLAALPRRSRKIPDEIYELFPVLK--------------EMLGRRGGDLSGGQQQQL 140
Query: 335 TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF 394
LV + L +DE + G+ S I +R+ + G A++ + Q EL
Sbjct: 141 AIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR-LRAEGGMAILLVEQYLDFARELA 199
Query: 395 DDLILLSDGQIVYQGPRENV 414
D ++ G++V G + +
Sbjct: 200 DRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 53/223 (23%)
Query: 157 LHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLAL--AGKLGKDLKFSGRV 214
L V ++KK L + VS P +T L+GP SGK+TLL ++ L ++ +G +
Sbjct: 11 LSVYYNKKKAL---NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 215 TYNGHGMEEFVPQRTSAYISQNDLHIG---------EMTVRETLAFSARCQGVGPRYEVL 265
YNGH + + P+ + + + IG M++ E + + R +G+
Sbjct: 68 VYNGHNI--YSPRTDTVDLRK---EIGMVFQQPNPFPMSIYENVVYGLRLKGI------- 115
Query: 266 QELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325
++K D ++ +K AS+ + K+ + D L G
Sbjct: 116 -----KDKQ---VLDEAVEKSLKGASIWDEVKDRLHDSAL-------------------G 148
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSL 368
+SGGQ++R+ +L + + +DE ++ LD + +I +L
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL 191
|
Length = 252 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 970 MELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
+E VE++P R + LP S ++RL IA LV P ++FMDEPT GLD A +
Sbjct: 132 LEEVEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187
Query: 1030 MRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ +R V D G V+ H + A LL+M++G
Sbjct: 188 LDLLRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 21/162 (12%)
Query: 870 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFARIS- 926
VS R G + +MG+SG+GK+TL+ + T SG + I G + +
Sbjct: 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT----SGKVLIDGQDIAAMSRKELRE 98
Query: 927 ------GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
Q+ PH TV E++ + ++ V R+ E +ELV L
Sbjct: 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEH 155
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 156 KYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 29/164 (17%)
Query: 883 MGVSGAGKTTLMDVLAGR--KTGGYVS-GSITISGYPKNQ--ETFARI-----SGYCEQT 932
+G +GAGK+TL++ +AG T G + + ++ + AR+ +G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA--- 94
Query: 933 DIHSPHVTVYESLVYSAWLR-----LPPEVDSDTRKMFVEEVMELVE-LNPIREALVGLP 986
P +T+ E+L A R L ++ R F E + L L +GL
Sbjct: 95 ----PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL- 148
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1030
LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 149 ----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYVSGSITISGYPKN 918
++ L VS G + ++G SGAGK+TL+ L R T SGS+ + G
Sbjct: 15 TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----SGSVIVDGQDLT 70
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
+ + ++ Q + H + S + LP E+D+ + +V EL+ L +
Sbjct: 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGL 130
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+ P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 131 GDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 5e-07
Identities = 52/251 (20%), Positives = 99/251 (39%), Gaps = 53/251 (21%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+ ++S + P + LLGP +GKTT + G L G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 228 RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIM 287
R + L+ +MTV + L + A +G+ P+ E+ ++ + +
Sbjct: 73 RIGYLPEERGLY-PKMTVEDQLKYLAELKGM-PKAEIQKK---------------LQAWL 115
Query: 288 KAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARAL 347
+ + G++ + + +S G ++++ ++ L
Sbjct: 116 ERLEIVGKKTKKIKE-----------------------LSKGNQQKIQFISAVIHEPELL 152
Query: 348 FMDEISTGLDSSTTYQIVNS--LRQSIHILN--GTAVISLLQPAPETYELFDDLILLSDG 403
+DE +GLD VN L+ +I L G +I EL D L++L G
Sbjct: 153 ILDEPFSGLDP------VNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKG 206
Query: 404 QIVYQGPRENV 414
Q V G E++
Sbjct: 207 QTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 5e-07
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 40/204 (19%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSITISGYPK 917
D+R+ F G+S G L + G +GAGKT+L+ +LAG R G V I +
Sbjct: 12 DERILF-SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR---R 67
Query: 918 NQETFARISGYCEQTDIHSPHV----TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV 973
++ + + Y H P + T E+L + RL D +
Sbjct: 68 QRDEYHQDLLYLG----HQPGIKTELTALENL--RFYQRLHGPGDDEA------------ 109
Query: 974 ELNPIREAL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
+ EAL VGL G V LS Q++R+ +A + + +DEP + +D +
Sbjct: 110 ----LWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165
Query: 1027 AIVMRTVRNTVDTGRTVVCTIHQP 1050
A + + + G V+ T HQ
Sbjct: 166 ARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-07
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 26/169 (15%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYVSGSITISGYPKNQETF 922
+K +S RPG L+G SG+GK+T L+ ++ + G I G P +
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 923 ARISGYCEQT-----DIHS---PHVTVYESLVYSAWLRL-PPEVDSDTRKMFVEEVMELV 973
++ + D +S P + V + + LR+ P + + R+ V VME V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 974 ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
L+P E P + S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 413 GLDP--ETRHRYP--AEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-07
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 40/220 (18%)
Query: 868 KGVSGA---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YVSGSITISGYPKNQ 919
K +SGA PG + AL+G +GAGK+T+M VL G + G Y+ +T +G +Q
Sbjct: 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77
Query: 920 ETFARISGYCEQTDIHS-----PHVTVYESL-----VYSAWLRLPPEVDSDTRKMFVEEV 969
E A I IH P +T+ E++ + + R+ D +KM+ E
Sbjct: 78 E--AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEAD 123
Query: 970 MELVELNPIREA--LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
L LN + LVG LS +++ + IA L +I MDEPT L
Sbjct: 124 KLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE 178
Query: 1028 IVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ R +R GR +V H+ +IF+ D++ + + G
Sbjct: 179 SLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 853 EMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI 912
E K E LK +S F G + ++G SGAGK+TL+ ++ + GSI I
Sbjct: 5 EFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILI 62
Query: 913 SGYP-KNQET--FARISGYCEQTDIHSPHV---TVYESLVYSAWLRLPPEVDSDTRKMFV 966
G K + R G Q PH+ TV +++ Y L+ VD V
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQ----QPHLFEGTVKDNIEYGPMLKGEKNVD-------V 111
Query: 967 EEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
E + +V LN +E V LS + +R++IA L NP ++ +DEPTS LD +
Sbjct: 112 EYYLSIVGLN--KEYAT--RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167
Query: 1027 AIVMRTVRN 1035
I+ +
Sbjct: 168 EIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 46/159 (28%), Positives = 62/159 (38%), Gaps = 47/159 (29%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
+ GVS + + G L+G SG GK+TL ++ G T SG I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT----SGEILFEG---------- 74
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984
DI ++ + R+ V E++E V L E L
Sbjct: 75 -------KDIT--------------------KLSKEERRERVLELLEKVGLPE--EFLYR 105
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
P LS QR+R+ IA L NP +I DEP S LD
Sbjct: 106 YP--HELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 12/102 (11%)
Query: 970 MELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
+E VE++ R + LP + S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 1030 MRTVRNTV-DTGRTVVCTIHQPSIDIFDA---FDELLLMKRG 1067
+ +R V + G VV H D+ A LL+MK+G
Sbjct: 191 LDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 6e-07
Identities = 54/180 (30%), Positives = 80/180 (44%), Gaps = 40/180 (22%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
+KG+ G L+G SG GK+TL+ ++AG + SG I I G N+ A
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPA--- 74
Query: 927 GYCEQTDIHS--------PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
DI PH++V E++ Y +R P+ + + R V E ++EL P+
Sbjct: 75 ----DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILELEPL 127
Query: 979 -----REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMR 1031
RE LS QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 128 LDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 7e-07
Identities = 54/194 (27%), Positives = 78/194 (40%), Gaps = 29/194 (14%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+L +VS + P L+G +GK+TLL LAG+L D SG VT ++ Q
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGLRVGYLSQ 73
Query: 228 RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI---- 283
E TV + + +G G E+L EL E+A + DPD
Sbjct: 74 EPPLD--------PEKTVLDYVI-----EGFGELRELLAEL---EEAYALLADPDDELLA 117
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+L L+G + L LG D V +SGG R+R+ L+
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEE 171
Query: 344 ARALFMDEISTGLD 357
L +DE + LD
Sbjct: 172 PDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-07
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR 924
E LKG+ G + AL+G +GAGK+TLM ++AG SG++ I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 925 ISGY----CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMEL-VELNPIR 979
Q + P+++V E++++ LP +KM + + L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQA-SMQKM-KQLLAALGCQLDLDS 136
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021
A L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 41/218 (18%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYVSGSITISGYPKNQ 919
LK V +PG + G +G+GK++L +D+ G+ V I IS P
Sbjct: 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL-H 91
Query: 920 ETFARISGYCEQTDIHSPHVTVYESLVYSAWLR--LPPEVDSDTRKMFVEEVMELVELNP 977
+R+S + + + +++S +R L PE +++ E +E+ +L
Sbjct: 92 TLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLKN 137
Query: 978 IREALVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
+ ++L G G+ + TE QR+ +A V SI+ MDE T+ +D I+
Sbjct: 138 MVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195
Query: 1030 MRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ V T RTVV H+ S I DA D +L++ RG
Sbjct: 196 QKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 48/197 (24%), Positives = 68/197 (34%), Gaps = 50/197 (25%)
Query: 187 GPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG--HGMEEFVPQRTSAYISQNDLHIGEMT 244
GP GKTTLL LAG L D SG V +NG + P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYV 304
E L F A + G + + D
Sbjct: 90 ALENLHFWAA-------------------------------------IHGGAQRTIED-A 111
Query: 305 LKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQI 364
L +GL D +S GQ++RL + + A +DE +T LD + +
Sbjct: 112 LAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 365 VNSLRQSIHILNGTAVI 381
LR H+ G V+
Sbjct: 167 AGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG-YPKNQETFARI 925
L+ +S PG +TAL+G +GAGK+TL+ LAG TGG ++G N E A I
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
|
Length = 272 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-06
Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 46/243 (18%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
+ FDD+ ++ D QG+ D VS +PG A++G +GAGK+TL+++L
Sbjct: 335 VEFDDVSFSYDN----SRQGVED--------VSFEAKPGQTVAIVGPTGAGKSTLINLL- 381
Query: 899 GRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVY----SAWLRLP 954
++ SG I I G I + + V ++ ++ +R+
Sbjct: 382 -QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432
Query: 955 PEVDSDTRKMFVEEVME---------LVELNPIR-EALVGLPGVSGLSTEQRKRLTIAVE 1004
+D EE+ +E P + +VG G LS +R+RL IA
Sbjct: 433 RPDATD------EEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARA 485
Query: 1005 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064
L+ +P I+ +DE TS LD A V + + + GRT H+ S + +A D +L+
Sbjct: 486 LLKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVF 542
Query: 1065 KRG 1067
G
Sbjct: 543 DNG 545
|
Length = 588 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYVSGSITISGYPKN 918
+K VS F +TA++G SG GK+T++ + + R TG + I +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NP 977
+ R G Q P +++Y++++ A +L V+ VE ++ V L +
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+++ L LS Q++RL IA + P +I MDEP S LD
Sbjct: 138 VKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 7/164 (4%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-E 920
R + L +S G + AL+G SG+GKTTL+ ++AG + SG I G ++
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLH 70
Query: 921 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
R G+ Q H+TV++++ + L + P + +V +L+E+ +
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAH 128
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 129 LADRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 13/178 (7%)
Query: 881 ALMGVSGAGKTTLMDVLAGRKTGGY-----VSGSITISG---YPKNQETFARISGYCEQT 932
+MG SG+GK+TL+ VL R Y V G + G + + + G Q
Sbjct: 40 GIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQ 98
Query: 933 DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992
PH+++Y+++ Y L+ + K VEE + V L + P S LS
Sbjct: 99 PNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA-SQLS 155
Query: 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1050
Q++RLTIA L P ++ MDEPTS +D + + + + + +V H P
Sbjct: 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 25/167 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV---SGSITISG---YPKNQE 920
+ S G + +MG+SG+GK+TL+ R + G I + G +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 921 TFA-----RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
+IS + + PH TV E++ + ++ V R+ E +ELV L
Sbjct: 99 ELRELRRKKISMVFQSFALL-PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGL 154
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+ LS ++R+ +A L +P I+ MDE S LD
Sbjct: 155 EGYADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 21/239 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGY-VSGSITISGYP----KNQ 919
L VS F +T+LMG +G+GKTT + L K GY SG + + G ++
Sbjct: 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96
Query: 920 ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
F R G Q P + L +L P + R + + E+ + ++
Sbjct: 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDAVK 154
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+ D
Sbjct: 155 DRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR 212
Query: 1040 GRTVVCTIHQ--PSIDIFDA----FDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDG 1092
TV+ H + I D FD L+ + E+++ P +H ++ +Y G+ G
Sbjct: 213 -LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP--KH-AETARYVAGLSG 267
|
Length = 276 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 49/191 (25%), Positives = 70/191 (36%), Gaps = 43/191 (22%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP- 226
L VS IK LLGP GKTTLL +AG SG + +G + P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 227 QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
+R + QN +TV E +AF R + + E+ R A
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
L ++ LE A+ ++ SGGQ++R+ LV +
Sbjct: 115 ------------------LDLVQLEGYANRKP-SQL----SGGQQQRVAIARALVNEPKV 151
Query: 347 LFMDEISTGLD 357
L +DE LD
Sbjct: 152 LLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 68/264 (25%), Positives = 103/264 (39%), Gaps = 58/264 (21%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR 228
+++D+S I LLGP +GK+T+ L G + D G++T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 229 TSA------YISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD 282
+ Q D E TVRE L R G +S RE A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 283 IDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG 342
+L+ LE AD V +SGG ++RLT L+
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402
+ L +DE +TGLD + I LR + G ++ E L D L +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLAR--GKTILLTTHFMEEAERLCDRLCVLES 210
Query: 403 GQIVYQGPRENVLEFFERMGFKCP 426
G+ + +G +++ E++G C
Sbjct: 211 GRKIAEGRPHALID--EQIG--CN 230
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 46/254 (18%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFS-GRVTYNGHGMEEFVP 226
T+LH +S ++T L+G SGK+TLL LG+ S G + + +E +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLL----KMLGRHQPPSEGEILLDAQPLESWSS 80
Query: 227 Q---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
+ R AY+ Q MTVRE +A +G RY L R A K + I
Sbjct: 81 KAFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRFGAADREKVEEAI 132
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
L+ GL+ A +V +SGG+R+R ++
Sbjct: 133 SLV----------------------GLKPLAHRLVDS-----LSGGERQRAWIAMLVAQD 165
Query: 344 ARALFMDEISTGLDSSTTYQI-VNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402
+R L +DE ++ LD +Q+ V +L + G VI++L D L+ L
Sbjct: 166 SRCLLLDEPTSALD--IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG 223
Query: 403 GQIVYQGPRENVLE 416
G+++ QG ++
Sbjct: 224 GEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 63/288 (21%), Positives = 113/288 (39%), Gaps = 83/288 (28%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLAL--AGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
L +++ I ++T L+GP GK+TLL +L L ++ G+V ++G
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ-------- 68
Query: 228 RTSAYISQNDL-----HIG---------EMTVRETLAFSARCQGVGPRYEVLQELSRREK 273
Y + D+ +G M++ + +A+ R G+ + +EL +
Sbjct: 69 --DIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDK----KELDEIVE 122
Query: 274 AANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKR 333
+ +K A+L + K+ + D L G+SGGQ++R
Sbjct: 123 ES-----------LKKAALWDEVKDRLHDSAL-------------------GLSGGQQQR 152
Query: 334 LTTGEMLVGPARALFMDEISTGLDSSTTYQI---VNSLRQSIHILNGTAVI---SLLQPA 387
L L L +DE ++ LD T +I + L++ T VI ++ Q A
Sbjct: 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKY-----TIVIVTHNMQQAA 207
Query: 388 PETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFL 435
+ D DG++V GP E + F P+ K D++
Sbjct: 208 ----RISDRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 56/247 (22%), Positives = 83/247 (33%), Gaps = 72/247 (29%)
Query: 185 LLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIG 241
L+GP +GK+TLL +AG SG + + G +E + R AY+SQ
Sbjct: 30 LVGPNGAGKSTLLARMAGM----TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPF 85
Query: 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVT 301
M V L P + L
Sbjct: 86 AMPVWHYLTLHQ------PDKTRTELL--------------------------------- 106
Query: 302 DYVLKILGLEVCADTMVGDEMLRGI---SGG--QRKRLTTGEMLVGP-----ARALFMDE 351
+ V L L D++ R SGG QR RL + + P + L +DE
Sbjct: 107 NDVAGALAL--------DDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158
Query: 352 ISTGLD---SSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQ 408
LD S +++++L Q G A++ T LL G+++
Sbjct: 159 PMNSLDVAQQSALDRLLSALCQQ-----GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLAS 213
Query: 409 GPRENVL 415
G RE VL
Sbjct: 214 GRREEVL 220
|
Length = 248 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYVSGSITISGYPKNQETFA 923
L + G + ++G SG+GK+TL+ + L +G + + ++ ++
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIR 76
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV 983
+ +G Q PH+T E++++ P V +++ ++ EL+ A V
Sbjct: 77 QEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELL-------AKV 124
Query: 984 GL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1036
GL P S LS Q++R+ IA L P ++ DEPTS LD V++ +++
Sbjct: 125 GLAERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182
Query: 1037 VDTGRTVVCTIHQ 1049
+ G T+V H+
Sbjct: 183 AEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 61/264 (23%), Positives = 112/264 (42%), Gaps = 45/264 (17%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
T+ +++ I T ++GP GK+TLL L+ + G V +G ++ + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM---TPAHGHVWLDGEHIQHYASK 77
Query: 228 ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
R ++QN G++TV+E +A +G P + + ++ A +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVA-----RGRYPHQPLFTRWRKEDEEA-------VT 125
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
M+A + T + D+ + +SGGQR+R +L
Sbjct: 126 KAMQATGI-----------------------THLADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 345 RALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404
+ +DE +T LD S ++ L + ++ G + ++L + LI L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 405 IVYQG-PRENVL-EFFERM-GFKC 425
IV QG P+E V E ER+ G +C
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 884 GVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVY 942
G SG GK+TL+ ++AG + SG + I N R G Q+ PH++V
Sbjct: 36 GPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93
Query: 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA 1002
E++ S L+L + V +V E+++L + + P LS QR+R+ I
Sbjct: 94 ENM--SFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRK---P--KALSGGQRQRVAIG 145
Query: 1003 VELVANPSIIFMDEPTSGLDARAAAIVMR 1031
LVA PS+ +DEP S LDA A + MR
Sbjct: 146 RTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 879 LTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITISG---YPKNQETFARIS-G 927
+TAL+G SG GK+TL+ D++ G K ++G +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 928 YCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NPIREALVGLP 986
Q P +++YE++ Y LR D VE + L + +++ L
Sbjct: 87 MVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH- 142
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 -AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 39/180 (21%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
++ VS R G + + G+ G G+T L + L G + SG IT+ G
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDG------------ 61
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
+ SP + + Y PE D ++ + V++L + E + L
Sbjct: 62 ---KPVTRRSPRDAIRAGIAYV------PE---DRKREGL--VLDL----SVAENIA-LS 102
Query: 987 GVSGLS--TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
S LS +Q+ + +A L +P ++ +DEPT G+D A A + R +R D G+ V+
Sbjct: 103 --SLLSGGNQQK--VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 64/227 (28%)
Query: 859 IPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918
+ + L+ + + VL + GVSG+GK+TL+ G Y SG + +
Sbjct: 3 VSGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK 56
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-- 976
S + + F++++ L+++
Sbjct: 57 ----------------FSRNKLI-----------------------FIDQLQFLIDVGLG 77
Query: 977 --PIREALVGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRT 1032
+ + L S LS + +R+ +A EL + P ++ +DEP++GL + ++
Sbjct: 78 YLTLGQKL------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEV 131
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM-----KRGGEEIYVG 1074
++ +D G TV+ H D+ + D ++ K GG+ ++ G
Sbjct: 132 IKGLIDLGNTVILIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITISG 914
D LK V+ +TAL+G SG GK+T + D++ G + G I + G
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH----EGHIYLDG 69
Query: 915 ---YPKNQET--FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEV 969
Y + + G Q P ++++++ Y LR+ E D D + VEE
Sbjct: 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDEDFIEERVEES 126
Query: 970 MELVEL-NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
++ L + +++ L GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 127 LKAAALWDEVKDKLD--KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-06
Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 58/242 (23%)
Query: 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYI 233
+ + L+GP +GKT+LL AL G L + G + NG + E P+ + +++
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 234 SQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLE 293
QN + T+R+ + PD + + +A
Sbjct: 429 GQNP-QLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL--- 459
Query: 294 GQEKNVVTDYVLKI-LGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEI 352
E V++++ + GL DT +GD+ G+S GQ +RL L+ P + L +DE
Sbjct: 460 --ENAWVSEFLPLLPQGL----DTPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEP 512
Query: 353 STGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL-----FDDLILLSDGQIVY 407
+ LD+ + ++ +L + + + T++L +D + ++ DGQIV
Sbjct: 513 TASLDAHSEQLVMQALNAASR---RQTTLMV------THQLEDLAQWDQIWVMQDGQIVQ 563
Query: 408 QG 409
QG
Sbjct: 564 QG 565
|
Length = 588 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 72/271 (26%), Positives = 114/271 (42%), Gaps = 48/271 (17%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-VPQ 227
+L+D+S I ++ LLGP SGKTTLL +A G + + SG + ++G +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA---GLEHQTSGHIRFHGTDVSRLHARD 73
Query: 228 RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIM 287
R ++ Q+ MTV + +AF V PR E R AA IK
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFGLT---VLPRRE-------RPNAAAIK--------A 115
Query: 288 KAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARAL 347
K L L+++ L AD +SGGQ++R+ L + L
Sbjct: 116 KVTQL------------LEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQIL 158
Query: 348 FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407
+DE LD+ ++ LRQ L T+V + E E+ D ++++S G I
Sbjct: 159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNIEQ 217
Query: 408 QGPRENVLEFFERMGFKCPERKGVADFLQEV 438
G + V ++ P + V +F+ EV
Sbjct: 218 AGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK--NQ 919
D + L+GVS +TA++G SG GK+T + L + + + G + NQ
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 920 ETFAR---ISGYCEQTDIHSPH-----VTVYESLVYSAWL-RLPPEVDSDTRKMFVEEVM 970
+ R ++ Q + P ++VY+++ Y + P+++ D VE +
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD---IVESAL 131
Query: 971 ELVEL-----NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025
+ +L + I ++ + L G Q++RL IA L P ++ MDEP GLD A
Sbjct: 132 KDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185
Query: 1026 AAIVMRTVRN 1035
+ V +++
Sbjct: 186 SMKVESLIQS 195
|
Length = 261 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-06
Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 40/217 (18%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
LKG++ PG + AL+G SG+GK+T+ +L + TGG + + G P
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVP-------- 544
Query: 925 ISGYCEQTDIHSPHVTV----YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
Q D H H V E +++S +R EE+M + +
Sbjct: 545 ----LVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD--EEIMAAAKAANAHD 598
Query: 981 ALVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
++ P G G LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQ 654
Query: 1032 TVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
++ + RTV+ H+ S + A D++L++K+G
Sbjct: 655 LLQESRSRASRTVLLIAHRLST-VERA-DQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 27/180 (15%)
Query: 876 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIH 935
G + G +GAGKTTL+ VLAG SG I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 936 SPHVTVYESLVYSAWL--RLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPG-----V 988
++ E+L + L R ++ A+VGL G V
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSAL------------------AIVGLAGYEDTLV 135
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 136 RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 24/173 (13%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQ 919
D L + G+S R G L+G SG+GK+TL L G I G + +
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 920 ETFARISGYCEQTDIH----------SPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEV 969
R + SP +TV ++ P++ + R V E
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTV-GQIIEEGLRVHEPKLSAAERDQRVIEA 409
Query: 970 MELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+E V L+P P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 410 LEEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 24/180 (13%)
Query: 882 LMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY---------PKNQETFARISGYCEQT 932
L+G SGAGK++L+ VL + SG++ I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 933 DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE---LNPIREALVGLPGVS 989
PH+TV ++L+ + P V ++ + +L+E L P + P
Sbjct: 91 YNLWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKLLERLRLKPYADRF---P--L 140
Query: 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+
Sbjct: 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L VS R G + +L G +GAGK+TLM VL+G G G I G + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL---QASNIR 77
Query: 927 GYCEQTD---IHS-----PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
E+ IH ++V E++ + +D D + ++++ ++L+ I
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-I 135
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
P V L Q++ + IA L ++ +DEPT+ L A+++ +R+
Sbjct: 136 N---PATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188
|
Length = 506 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 26/203 (12%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG--------- 914
L L G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 915 ----YPKNQETFARIS---GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVE 967
P +++ ++ G Q+ PH TV +++ + P V R +
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA-----PVLVLGMARAEAEK 125
Query: 968 EVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
MEL+++ + + +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 126 RAMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
Query: 1028 IVMRTVRN-TVDTGRTVVCTIHQ 1049
V+ +R + T++ H+
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 11/210 (5%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN----QETF 922
L G+ RPG L G +GAGK+TLM +L+G G G I SG P ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREA 981
Q P ++V E++ + LP + + + + ++ ++L+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1041
V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 R----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL--KAH 190
Query: 1042 TVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071
V C ++ A + + + R G+ +
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 61/232 (26%), Positives = 88/232 (37%), Gaps = 55/232 (23%)
Query: 185 LLGPPSSGKTTLL---LALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTS-AYISQNDLHI 240
LLGP +GKTTLL L L +K +G G +VPQR A+ D I
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAW----DFPI 66
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
+V T+ S R +G RR A+
Sbjct: 67 ---SVAHTV-MSGRTGHIGW--------LRRPCVADF---------------------AA 93
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
L+ +GL AD VG+ +SGGQR+R+ L L +DE TGLD T
Sbjct: 94 VRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148
Query: 361 TYQIVN---SLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
+ L + GTA++ + D ++LL +G+++ G
Sbjct: 149 QELLTELFIELAGA-----GTAILMTTHDLAQAMATCDRVVLL-NGRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 61/266 (22%), Positives = 98/266 (36%), Gaps = 82/266 (30%)
Query: 173 VSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RT 229
+S ++ + L+GP +GK+TLL +AG L SG + + G +E + R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELARH 70
Query: 230 SAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKA 289
AY+SQ M V + L L + +K
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLT-----------------LHQPDKTR-------------- 99
Query: 290 ASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI---SGG--QRKRLTTGEMLVGP- 343
+ + EV + D++ R + SGG QR RL + V P
Sbjct: 100 ---TEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 344 ----ARALFMDEISTGLD---SSTTYQIVNSL-RQSI------HILNGTAVISLLQPAPE 389
+ L +DE LD + ++++ L +Q I H LN T L+ A
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHT-----LRHA-- 200
Query: 390 TYELFDDLILLSDGQIVYQGPRENVL 415
D + LL G+++ G R+ VL
Sbjct: 201 -----DRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 30/206 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
LK VS G L+G +GAGK+TL+ +LAG SG++T+ G R
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD----SGTVTVRG---------R 84
Query: 925 ISGYCE-QTDIHSPHVTVYESLVYSAWL--RLPPEVDSDTRKMFVEEVMELVELNPIREA 981
+S + P +T E++ + L E+D ++E++E EL
Sbjct: 85 VSSLLGLGGGFN-PELTGRENIYLNGRLLGLSRKEIDE-----KIDEIIEFSEL----GD 134
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1041
+ LP V S+ + RL A+ P I+ +DE + DA R +R + G+
Sbjct: 135 FIDLP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193
Query: 1042 TVVCTIHQPSIDIFDAFDELLLMKRG 1067
TV+ H PS I D L++++G
Sbjct: 194 TVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-06
Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 46/197 (23%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYVSGSITISGYPKNQETFARISGYCEQ 931
RPG + ++G +G GK+T + +LAG G Y P E R G
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRY-------EDPPSWDEVIKRFRG---- 146
Query: 932 TDIHSPHVTVYESLVYSAWLR----------LPPEVDSDTRKM--------FVEEVMELV 973
T++ + Y +Y LR +P V ++ +EV+E +
Sbjct: 147 TELQN-----YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL 201
Query: 974 ELNPI--REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
L + R+ VS LS + +R+ IA L+ + + F DEP+S LD R R
Sbjct: 202 GLENVLDRD-------VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR 254
Query: 1032 TVRNTVDTGRTVVCTIH 1048
+R + G+ V+ H
Sbjct: 255 VIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 54/200 (27%), Positives = 75/200 (37%), Gaps = 52/200 (26%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYVSGSITISGYPK 917
DD LKGVS +TAL+G SG GK+T + L R + GS+ + G
Sbjct: 57 DDHA--LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG--- 111
Query: 918 NQETFARISGYCEQTDIHSPHVTVYE-----SLVYSAWLRLP----------PEVDSDTR 962
DI+ V + E +V+ + P P D
Sbjct: 112 --------------QDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDIN 157
Query: 963 KMFV---------EEVMELVELNPIREALVGL------PGVSGLSTEQRKRLTIAVELVA 1007
+ + ELVE + + AL GLS Q++RL IA L
Sbjct: 158 TGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV 217
Query: 1008 NPSIIFMDEPTSGLDARAAA 1027
+P +I MDEP S LD A +
Sbjct: 218 DPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 62/262 (23%), Positives = 110/262 (41%), Gaps = 54/262 (20%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF---V 225
IL D+S IK T ++G SGK+TL L G SG + NG +++
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 226 PQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
++ Y+ Q + +I ++ E L A K + D
Sbjct: 546 LRQFINYLPQ-EPYIFSGSILENLLLGA------------------------KENVSQDE 580
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
I A + + + I + + T + +E ISGGQ++R+ L+ ++
Sbjct: 581 IWAACEIAEIKDD--------IENMPLGYQTELSEEG-SSISGGQKQRIALARALLTDSK 631
Query: 346 ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISL---LQPAPETYELFDDLILLSD 402
L +DE ++ LD+ T +IVN+L L +I + L A ++ D +I+L
Sbjct: 632 VLILDESTSNLDTITEKKIVNNLLN----LQDKTIIFVAHRLSVAKQS----DKIIVLDH 683
Query: 403 GQIVYQGPRENVLE---FFERM 421
G+I+ QG + +L+ F+ +
Sbjct: 684 GKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 66/262 (25%), Positives = 109/262 (41%), Gaps = 54/262 (20%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220
P KKP L +S ++ ++GP SGK+TL + +G SG V +G
Sbjct: 327 PGGKKP--TLRGISFSLQAGEALAIIGPSGSGKSTLARLI---VGIWPPTSGSVRLDGAD 381
Query: 221 MEEFVPQRTSAYISQNDL--HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI- 277
++++ + HIG + Q V EL A NI
Sbjct: 382 LKQW---------DRETFGKHIGYLP-----------QDV--------ELFPGTVAENIA 413
Query: 278 --KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI--SGGQRKR 333
+ D + I++AA L G + IL L DT++G G SGGQR+R
Sbjct: 414 RFGENADPEKIIEAAKLAGVHE--------LILRLPDGYDTVIGP---GGATLSGGQRQR 462
Query: 334 LTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL 393
+ L G + + +DE ++ LD + N++ +++ T V+ +P+
Sbjct: 463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAI-KALKARGITVVVITHRPS--LLGC 519
Query: 394 FDDLILLSDGQIVYQGPRENVL 415
D +++L DG+I G R+ VL
Sbjct: 520 VDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTA 379
D++ R SGG ++RL LV R +FMDE + GLD S ++++ LR + L G A
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLA 204
Query: 380 VISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416
V+ + L D L+++ GQ+V G + VL+
Sbjct: 205 VVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 70/257 (27%), Positives = 108/257 (42%), Gaps = 42/257 (16%)
Query: 839 ITFDDI--RYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896
ITF + RY P E +A L V+ + G A++G +G+GK+TL+
Sbjct: 3 ITFQKVEHRYQYKTPFERRA----------LYDVNVSIPSGSYVAIIGHTGSGKSTLLQH 52
Query: 897 LAG--RKTGGYVS-GSITISGYPKNQE--TFARISGYCEQTDIHSPHVTVYESLVYSAWL 951
L G + T G V+ G I+ KN++ + G Q P ++E V
Sbjct: 53 LNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQF----PEHQLFEETVEKDIC 108
Query: 952 RLP-----PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV 1006
P E D+ + E++ELV L E L P LS Q +R+ IA L
Sbjct: 109 FGPMNFGVSEEDAKQK---AREMIELVGLPE--ELLARSP--FELSGGQMRRVAIAGVLA 161
Query: 1007 ANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065
P ++ +DEPT+GLD + +M + + G T V H D D++++M
Sbjct: 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH 220
Query: 1066 RGG-------EEIYVGP 1075
+G EI+ P
Sbjct: 221 KGTVFLQGTPREIFADP 237
|
Length = 290 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 58/187 (31%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITISGYPKNQ 919
LK ++ +TAL+G SG GK+T + D++ K + G + + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 920 ETFARISGYCEQTDI-----------HSPH---VTVYESLVYSAWLRLPPEVDSDTRKMF 965
+ Y D+ P+ +++Y+++ Y P K
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKK 118
Query: 966 VEEVMEL----------VELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1015
++E++E V+ + AL GLS Q++RL IA L P ++ MD
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSAL-------GLSGGQQQRLCIARALAVEPEVLLMD 171
Query: 1016 EPTSGLD 1022
EPTS LD
Sbjct: 172 EPTSALD 178
|
Length = 250 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 37/242 (15%)
Query: 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL-KFSGRVTYNGHGMEE-FVPQR 228
D++ +K + L+G SGK+ LA+ G L L + SG + +G + + R
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR 62
Query: 229 TSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMK 288
A I QN T L F+ + E L+ L + K + I ++
Sbjct: 63 HIATIMQN-----PRTAFNPL-FTMGNHAI----ETLRSLGKLSK----QARALILEALE 108
Query: 289 AASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348
A L E+ VLK + +SGG +R+ L+ L
Sbjct: 109 AVGLPDPEE------VLKKYPFQ--------------LSGGMLQRVMIALALLLEPPFLI 148
Query: 349 MDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQ 408
DE +T LD +++ LR + L GT ++ + + D++ ++ DG+IV +
Sbjct: 149 ADEPTTDLDVVNQARVLKLLR-ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER 207
Query: 409 GP 410
G
Sbjct: 208 GT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 6e-06
Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 26/204 (12%)
Query: 857 QGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYVSGSITISGY 915
+ +K VS R G + + GV+G G++ L++ ++G RK SG I ++G
Sbjct: 264 SVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNG- 319
Query: 916 PKNQETFARISGYCEQ------TDIH----SPHVTVYESLVYSAWLRLPPE-----VDSD 960
K+ D H +++ E+LV P +D
Sbjct: 320 -KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHDKKPFSRGGFLDRR 377
Query: 961 TRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020
+ F E++E + +R P LS +++L +A EL P ++ +PT G
Sbjct: 378 AIRKFARELIEEFD---VRAPSPDAP-ARSLSGGNQQKLILARELARRPDLLIAAQPTRG 433
Query: 1021 LDARAAAIVMRTVRNTVDTGRTVV 1044
LD A + + D G+ V+
Sbjct: 434 LDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 16/207 (7%)
Query: 869 GVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYVSGSITISGYPKNQETF-A 923
++ + + G + AL+G SG+GK+ ++ +L T SG I + G P +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLSIRG 61
Query: 924 RISGYCEQTDIHS--PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA 981
R Q + P T+ + + R + +E +E V L E
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLS--KQARALILE-ALEAVGLPDPEEV 118
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1040
L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R G
Sbjct: 119 LKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG 176
Query: 1041 RTVVCTIHQPSIDIFDAFDELLLMKRG 1067
++ H + + DE+ +M G
Sbjct: 177 TGILLITHDLGV-VARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 879 LTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITISGY----PKNQETFARIS- 926
+TA++G SG GKTTL+ D + G + V G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NPIREALVGL 985
G Q P +++Y+++ + R+ VEE ++ L + ++ L
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NK 142
Query: 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025
PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 143 PGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 68/328 (20%), Positives = 111/328 (33%), Gaps = 75/328 (22%)
Query: 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF 224
+ DV+ I+ +L+GP SGKTT L + + SG + +G + +
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDL 68
Query: 225 VP---QRTSAYISQNDLHIG---EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIK 278
P +R Y+ Q IG +TV E +A + G R +K A
Sbjct: 69 DPVELRRKIGYVIQQ---IGLFPHLTVAENIATVPKLLGWDKE--------RIKKRA--- 114
Query: 279 PDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGE 338
D +L ++GL+ D +SGGQ++R
Sbjct: 115 -----------------------DELLDLVGLDPSE---YADRYPHELSGGQQQR----- 143
Query: 339 MLVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETY 391
VG ARAL MDE LD T Q+ ++ + G ++ + E
Sbjct: 144 --VGVARALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEAL 200
Query: 392 ELFDDLILLSDGQIVYQGPRENVL-----EFFE------RMGFKCPERKGVADFLQEVTS 440
+L D + ++ G+IV + +L +F E G + VAD ++
Sbjct: 201 KLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEP 260
Query: 441 RKDQEQYWANKDEPYSFVTAKEFSEVFQ 468
+ D V
Sbjct: 261 ADGEPLLEGFVDRDALSDFLARGRSVLP 288
|
Length = 309 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-06
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 31/154 (20%)
Query: 880 TALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY-----------PKNQETFARISGY 928
TA+ G SGAGKT+L++ ++G G I ++G P + RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKR---RI-GY 80
Query: 929 CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988
Q PH V +L Y + + D +V L I L P
Sbjct: 81 VFQDARLFPHYKVRGNLRYGMAKSMVAQFDK------------IVALLGIEPLLDRYP-- 126
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 28/248 (11%)
Query: 833 PFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTT 892
P EPH I D I A + + + + + + VS + R G + + G+ GAG+T
Sbjct: 247 PHEPHEIG-DVILEA----RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 893 LMDVLAGRKTGGYVSGSITISGYPKN-----QETFARISGYCEQTDIHS--PHVTVYESL 945
L+ L G G + G++ I+G P + Q A I+ E H P + V +++
Sbjct: 302 LVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 946 VYSAWLRLPPEVDSDTRKMFVEEVMEL------VELNPIREALVGLPGVSGLSTEQRKRL 999
S + S KM ++ EL ++ ++ A LP + LS +++
Sbjct: 361 TLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKA 412
Query: 1000 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1059
+A L+ NP ++ +DEPT G+D A + + + G ++ + ++ D
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII-VVSSELAEVLGLSD 471
Query: 1060 ELLLMKRG 1067
+L++ G
Sbjct: 472 RVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 25/156 (16%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR--ISGYCEQT 932
G A++G SGAGK+TL++++AG T SGS+T++G +R +S ++
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 933 DIHSPHVTVYE--SLVYSAWLRLPPE----VDSDTRKMFVEEVMELVELNPIREALVGLP 986
++ H+TV + L + L+L + + R+M +E+++ R LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-06
Identities = 64/252 (25%), Positives = 95/252 (37%), Gaps = 55/252 (21%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
++ +S ++ LLGP +GKTT L L G D +G ++ G E VP
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCG----EPVPS 73
Query: 228 RTS------AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
R + Q D + TVRE L R G LS A + P
Sbjct: 74 RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG----------LSAAAARALVPP-- 121
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
+L+ LE AD VG+ +SGG ++RLT LV
Sbjct: 122 ----------------------LLEFAKLENKADAKVGE-----LSGGMKRRLTLARALV 154
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401
L +DE +TGLD + + LR + G ++ E L D L ++
Sbjct: 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIE 212
Query: 402 DGQIVYQG-PRE 412
+G+ + +G P
Sbjct: 213 EGRKIAEGAPHA 224
|
Length = 306 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 9e-06
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 879 LTALMGVSGAGKTTLMDVLAGRKTG-GYVSGSITISGYP-KNQETFA---RISGYCEQTD 933
+TAL+G SG GK+T + + G + I G KNQ+ A + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NPIREALVGLPGVSGLS 992
+ ++YE++ Y+ L + + D + V + ++ V L +++ L LS
Sbjct: 90 VFVK--SIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLK--QNALALS 144
Query: 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 145 GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 9e-06
Identities = 59/209 (28%), Positives = 88/209 (42%), Gaps = 59/209 (28%)
Query: 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 897
S+T +++ + PD LKG+S + G AL+G +G GK+TL+ +L
Sbjct: 338 SLTLNNVSF-----------TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL 386
Query: 898 AGRKTGGYV--SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVY--SAWLR- 952
T + G I ++G P I+ Y E + ++V V+ SA LR
Sbjct: 387 ----TRAWDPQQGEILLNGQP--------IADYSEAALRQA--ISVVSQRVHLFSATLRD 432
Query: 953 -----LPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST------------EQ 995
P D + EV++ V L E L L GL+ EQ
Sbjct: 433 NLLLAAPNASDE---AL--IEVLQQVGL----EKL--LEDDKGLNAWLGEGGRQLSGGEQ 481
Query: 996 RKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
R RL IA L+ + ++ +DEPT GLDA
Sbjct: 482 R-RLGIARALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 71/304 (23%), Positives = 127/304 (41%), Gaps = 62/304 (20%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220
P KKP L+D+S I T L+G SGK+T+ + G L D + ++T +G
Sbjct: 16 PDSKKP--ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73
Query: 221 MEEF----VPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAAN 276
+ + ++ D TV + +AF + V PR E+
Sbjct: 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEM------------ 120
Query: 277 IKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLT- 335
I ++ + G + DY+ D +SGGQ++R+
Sbjct: 121 ------IKIVRDVLADVG-----MLDYI---------------DSEPANLSGGQKQRVAI 154
Query: 336 TGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFD 395
G + V P + + +DE ++ LD + QI+ +R+ + N VIS+ E + D
Sbjct: 155 AGILAVEP-KIIILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMAD 211
Query: 396 DLILLSDGQIVYQG-PRE--NVLEFFERMGFKCP---------ERKGVADFLQEVTSRKD 443
+++L DG+++ QG P E + +E + +G P + KG++ QE+ + +
Sbjct: 212 QVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEK 270
Query: 444 QEQY 447
QY
Sbjct: 271 LVQY 274
|
Length = 282 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 9e-06
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARI 925
L+ +S G L L G +GAGKTTL+ ++AG G I ++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 926 SGYC---EQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
C ++ I +P++T+ E+ +Y ++ + + E+ L L + +
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1043 VVCTIHQ 1049
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 43/192 (22%), Positives = 67/192 (34%), Gaps = 58/192 (30%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
+ +L D++ ++ +LGP GK+TLL +AG SG V + G P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLD--GRPVTGP 70
Query: 227 QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
Y+ Q D + +TV + +A +G RE+A +
Sbjct: 71 GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKA-------EARERAKEL--------- 114
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
L+++GL D +SGG R+R V ARA
Sbjct: 115 ------------------LELVGLAGFEDKYPHQ-----LSGGMRQR-------VAIARA 144
Query: 347 -------LFMDE 351
L +DE
Sbjct: 145 LATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 51/220 (23%), Positives = 82/220 (37%), Gaps = 55/220 (25%)
Query: 159 VLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG 218
+ + L+IL V ++K ++GP SGK+TLL LA G D SG V G
Sbjct: 15 TVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLA---GLDDPSSGEVRLLG 71
Query: 219 ---HGMEE----FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRR 271
H ++E + R ++ Q+ I +T E +A +G E S
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---------ESSAD 122
Query: 272 EKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML---RGISG 328
+A +L+ +GL G + +SG
Sbjct: 123 SRAGAKA-------------------------LLEAVGL--------GKRLTHYPAQLSG 149
Query: 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSL 368
G+++R+ G LF DE + LD +T +I + L
Sbjct: 150 GEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 66/308 (21%), Positives = 111/308 (36%), Gaps = 91/308 (29%)
Query: 163 RKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLAL-------AGKL---GKDLKFSG 212
+T L DVS I + ++G +GK+TLL + +G + G+DL
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLT--- 71
Query: 213 RVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRRE 272
+ + + ++ I Q+ + TV E +AF GV + E
Sbjct: 72 --ALSEAELRQL--RQKIGMIFQHFNLLSSRTVFENVAFPLELAGV----------PKAE 117
Query: 273 KAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRK 332
+ A L L+++GL AD +SGGQ++
Sbjct: 118 IKQ------------RVAEL------------LELVGLSDKADRYPAQ-----LSGGQKQ 148
Query: 333 RLTTGEMLVGPARA-------LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
R V ARA L DE ++ LD TT I+ L+ I+ G ++ +
Sbjct: 149 R-------VAIARALANNPKILLCDEATSALDPETTQSILELLKD-INRELGLTIVLI-- 198
Query: 386 PAPETYEL------FDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVT 439
T+E+ D + +L G++V +G V F P+ +F+ E
Sbjct: 199 ----THEMEVVKRICDRVAVLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246
Query: 440 SRKDQEQY 447
E+
Sbjct: 247 EIDLPEEL 254
|
Length = 339 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 68/289 (23%), Positives = 116/289 (40%), Gaps = 68/289 (23%)
Query: 154 LNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGR 213
+ LHV K+ IL V+ +K + ++GP SGK+TL +AG ++ SG
Sbjct: 3 IKDLHVSVEDKE---ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT-SGT 58
Query: 214 VTYNGHGMEEFVPQ---RTSAYIS-QNDLHIGEMTVRETL--AFSARCQGVGPRYEVLQE 267
+ + G + E P R +++ Q I ++ E L A +AR
Sbjct: 59 ILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNAR------------- 105
Query: 268 LSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR--- 324
R + D ++KA L +LG++ +E L
Sbjct: 106 --RSARGEEPLDLLDFLKLLKAK--------------LALLGMD--------EEFLNRSV 141
Query: 325 --GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQI---VNSLRQS----IHIL 375
G SGG++KR +M + + +DEI +GLD + +N LR+ + I
Sbjct: 142 NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIIT 201
Query: 376 NGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFK 424
+ +++ ++P D + +L DG+IV G E E E G+
Sbjct: 202 HYQRLLNYIKP--------DYVHVLLDGRIVKSGDVELAKE-LEEKGYD 241
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 47/251 (18%)
Query: 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV 225
P+ L V+ + P + LLG +GK+TL+ L+G G +T N +
Sbjct: 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLD 73
Query: 226 PQRTS----AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
+ + I Q I E+TV E L + R L+++ NI
Sbjct: 74 HKLAAQLGIGIIYQELSVIDELTVLENL-YIGR------------HLTKKVCGVNI---- 116
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
ID +E V +L +GL+V D V + +S ++ L + L+
Sbjct: 117 -IDW---------REMRVRAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLM 161
Query: 342 GPARALFMDEISTGLDSSTT---YQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398
A+ + MDE ++ L + + I+N LR+ GTA++ + E + D
Sbjct: 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-----EGTAIVYISHKLAEIRRICDRYT 216
Query: 399 LLSDGQIVYQG 409
++ DG V G
Sbjct: 217 VMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 42/199 (21%), Positives = 66/199 (33%), Gaps = 52/199 (26%)
Query: 185 LLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP--QRTSAYISQNDLHIGE 242
+ GP SGKTTLL LAG +GRV NG ++ R Y+
Sbjct: 31 VTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTT 87
Query: 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTD 302
++V E L F +V + L+R L G
Sbjct: 88 LSVLENLRFWHA---DHSDEQVEEALAR-------------------VGLNG-------- 117
Query: 303 YVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTY 362
D + +S GQ++R+ +L+ +DE +T LD +
Sbjct: 118 ---------------FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVA 162
Query: 363 QIVNSLRQSIHILNGTAVI 381
+ ++ H G V+
Sbjct: 163 RFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 44/181 (24%), Positives = 65/181 (35%), Gaps = 45/181 (24%)
Query: 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQN 236
+ L+ G +GKTTLL LAG L + SG++ +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 237 DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQE 296
H+ + +LS E + L G+
Sbjct: 89 --HLPGLK---------------------ADLSTLEN------------LHFLCGLHGRR 113
Query: 297 KNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGL 356
+ L I+GL DT+V R +S GQ+KRL + + PA +DE L
Sbjct: 114 AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168
Query: 357 D 357
D
Sbjct: 169 D 169
|
Length = 214 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 35/176 (19%)
Query: 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSIT-----ISGYPKNQ-- 919
V+ R + +L+G +GAGKTT+ + L G + TGG +I I G P +Q
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG----TILLRGQHIEGLPGHQIA 78
Query: 920 -----ETFARISGYCEQTDIHSPHVTVYESL---VYSAWLRLP----PEVDSDTRKMFVE 967
TF + + E T I + V ++ L ++S L+ P E ++ R
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL 138
Query: 968 EVMELVEL-NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
E + L+E N R+A L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 139 ERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 32/186 (17%)
Query: 879 LTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITISG---YPKNQETFA--RIS 926
+TAL+G SG GK+T + D++ G K + G++ G Y N + R
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYSNNFDILELRRKI 90
Query: 927 GYCEQTDIHSPHV-TVYESLVYSAWLRLPPEVDSDTRKMFVEEVME--LVE---LNPIRE 980
G QT +P + ++Y+++ Y P++ K ++E++E L + N +++
Sbjct: 91 GMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1040
L LS Q++RL IA L P++I MDEPTS LD + + + N ++
Sbjct: 143 KLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESY 200
Query: 1041 RTVVCT 1046
++ T
Sbjct: 201 TIIIVT 206
|
Length = 254 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 62/231 (26%), Positives = 88/231 (38%), Gaps = 54/231 (23%)
Query: 185 LLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSA------YISQNDL 238
LLGP +GK+T+ + G D +G++T G VP R + Q D
Sbjct: 72 LLGPNGAGKSTIARMILGMTSPD---AGKITVLG----VPVPARARLARARIGVVPQFDN 124
Query: 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKN 298
E TVRE L R G +S RE A I
Sbjct: 125 LDLEFTVRENLLVFGRYFG----------MSTREIEAVIPS------------------- 155
Query: 299 VVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDS 358
+L+ LE AD V D +SGG ++RLT L+ + L +DE +TGLD
Sbjct: 156 -----LLEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDP 205
Query: 359 STTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
+ I LR + G ++ E L D L +L G+ + +G
Sbjct: 206 HARHLIWERLRSL--LARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254
|
Length = 340 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 50/162 (30%)
Query: 194 TTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTS----AYISQNDLHIGEMTVRETL 249
+TLL + G L SG + +G ++ + Q+ E+TVRE L
Sbjct: 1 STLLKLITGLL---QPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 250 AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILG 309
F R +A L+ +G
Sbjct: 58 FFGLR------------------------DKEADARAEEA---------------LERVG 78
Query: 310 LEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDE 351
L D + SGGQ++R+ L+ + L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 58/260 (22%), Positives = 102/260 (39%), Gaps = 67/260 (25%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE--FVPQ 227
L +VS + R+ LGP +GK+T + + G L D SG V G + + Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 228 RTSAYISQ-NDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
R Y+ + N L++ +M VRE L F A G+
Sbjct: 75 RNIGYLPEHNPLYL-DMYVREYLQFIAGIYGM---------------------------- 105
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
+GQ + +++++GL +G +S G R+R+ + L+ +
Sbjct: 106 ------KGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKV 154
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQ---------SIHILNGTAVISLLQPAPETYELFDDL 397
L +DE +TGLD + +I N ++ S HI+ E + D +
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQ------------EVEAICDRV 202
Query: 398 ILLSDGQIVYQGPRENVLEF 417
I+++ G+IV + +
Sbjct: 203 IIINKGKIVADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-05
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 69/216 (31%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLL--LALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
L D++ I ++T L+GP GK+TLL L L + G V +G +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI----- 76
Query: 227 QRTSAYISQNDL--HIG---------EMTVRETLAFSARCQGVGPRYEVLQELSRREKAA 275
+ +L +G M++ + +A+ R G+ + + L E E +
Sbjct: 77 --YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI--KDKELDE--IVESS- 129
Query: 276 NIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLT 335
+K A+L + K+ + L G+SGGQ++RL
Sbjct: 130 -----------LKKAALWDEVKDRLHKSAL-------------------GLSGGQQQRLC 159
Query: 336 TGEMLVGPARA-------LFMDEISTGLDSSTTYQI 364
ARA L MDE ++ LD +T +I
Sbjct: 160 I-------ARALAVKPEVLLMDEPTSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 2e-05
Identities = 58/256 (22%), Positives = 96/256 (37%), Gaps = 48/256 (18%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLAL--------AGKLGKDLKFSGRVTYNGH 219
T+L VS + +T L+GP SGKTT L L + D+ GR +N
Sbjct: 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94
Query: 220 GMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKP 279
+ EF + + N M++ + + R + PR E
Sbjct: 95 DVLEFRRRVGMLFQRPNPF---PMSIMDNVLAGVRAHKLVPRKE---------------- 135
Query: 280 DPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEM 339
G + +T+ +GL + D R +SGGQ++ L
Sbjct: 136 ------------FRGVAQARLTE-----VGLWDAVKDRLSDSPFR-LSGGQQQLLCLART 177
Query: 340 LVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399
L L +DE ++ LD +TT +I +R + + VI + + + D L
Sbjct: 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRS---LADRLTVIIVTHNLAQAARISDRAAL 234
Query: 400 LSDGQIVYQGPRENVL 415
DG++V +GP E +
Sbjct: 235 FFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 63/285 (22%), Positives = 117/285 (41%), Gaps = 52/285 (18%)
Query: 163 RKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLL---LALAGKLGKDLKFSGRVTYNGH 219
R LT+L ++ + L+GP SGK+T+L + L ++ G Y+
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH-- 66
Query: 220 GMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKP 279
+P R + ++ H+ +M R + + + P VL N+
Sbjct: 67 -----MPGRNGPLVPADEKHLRQM--RNKIGMVFQSFNLFPHKTVLD---------NVTE 110
Query: 280 DPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEM 339
P + L M A E + + L ++GL AD M +SGGQ++R+
Sbjct: 111 APVLVLGMARAEAEKRAMEL-----LDMVGLADKADHMPAQ-----LSGGQQQRVAIARA 160
Query: 340 LVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL-----F 394
L + + DE+++ LD +++N +R+ + T ++ T+E+ F
Sbjct: 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV-------THEMGFAREF 213
Query: 395 DDLILLSD-GQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEV 438
D + D G+IV QG + + F+ P+ + +FL +V
Sbjct: 214 ADRVCFFDKGRIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 26/184 (14%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YVSGSITISG---YPK 917
E L G+S F LTAL+G SG GK+T + L R ++G I G Y
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGS 76
Query: 918 NQETFA--RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
+ + G Q P +VY+++ Y L++ D + VEE ++ +
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAI 133
Query: 976 ------NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
N R A S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 134 WKETKDNLDRNA-------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI 186
Query: 1030 MRTV 1033
T+
Sbjct: 187 EETL 190
|
Length = 251 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 57/222 (25%), Positives = 89/222 (40%), Gaps = 47/222 (21%)
Query: 837 HSITFDDIRY--ALDMPQEMKAQGIPDDRLEF-----LKGVSGAFRPGVLTALMGVSGAG 889
H IT + L++ E A + + L + L +S +TA +G SG G
Sbjct: 4 HGITLMALPLLDVLNLSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCG 63
Query: 890 KTTLM-------DVLAGRKTGGYVSGSITISG---YPKNQE--TFARISGYCEQTDIHSP 937
K+TL+ D++ + + G I + G Y K + R G Q P
Sbjct: 64 KSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFP 119
Query: 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVE----------EVMELVELNPIREALVGLPG 987
++YE++VY LRL + VE EV + + N A
Sbjct: 120 K-SIYENVVYG--LRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHEN----AF----- 167
Query: 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
GLS Q++RL IA + P ++ +DEPTS LD + +
Sbjct: 168 --GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYVS--GSITISGYPK 917
LK ++ + +TA++G SG GK+T + L K G ++ GS + G
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-N 976
E I G Q P ++++++ Y R+ + + VE+ ++ V L +
Sbjct: 88 LVELRKNI-GMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWD 143
Query: 977 PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+++ L LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 144 EVKDRLHT--QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 879 LTALMGVSGAGKTTLMDVLAGRK---TGGYVSGSITISG---YPKNQETFA--RISGYCE 930
+TAL+G SG GK+T + L + + G + + G Y K+ + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 931 QTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NPIREALVGLPGVS 989
Q P +++Y+++ Y R+ D VE ++ L + +++ L
Sbjct: 92 QKPNPFP-MSIYDNVAYGP--RIHGIKDKKELDKIVEWALKKAALWDEVKDDLK--KSAL 146
Query: 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
LS Q++RL IA + P +I MDEPTS LD
Sbjct: 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 27/193 (13%)
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQE 920
+++ L VS G + L+G +GAGKTTL+ L G R T SG I G
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT----SGRIVFDGKDITDW 72
Query: 921 TFARI-----SGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
A+I + E + S +TV E+L + R F E + + EL
Sbjct: 73 QTAKIMREAVAIVPEGRRVFS-RMTVEENLAMGGFFA--------ERDQFQERIKWVYEL 123
Query: 976 NP-IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
P + E + G +S +++ L I L++ P ++ +DEP+ GL A I+++ +
Sbjct: 124 FPRLHERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIF 177
Query: 1035 NTVDTGRTVVCTI 1047
+T++ R TI
Sbjct: 178 DTIEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 45/235 (19%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLAL--AGKLGKDLKFSGRVTYNGHGMEEF-- 224
IL VS I ++T ++GP GK+T L L +L +++ GRV + + E
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 225 ----VPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPD 280
+ ++ S + +L M+V + +A+ + G P+ E+ D
Sbjct: 82 NLNRLRRQVSMVHPKPNLF--PMSVYDNVAYGVKIVGWRPKLEI---------------D 124
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
++ +K A L + K+ + L + SGGQ++RL L
Sbjct: 125 DIVESALKDADLWDEIKHKIHKSALDL-------------------SGGQQQRLCIARAL 165
Query: 341 VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFD 395
+ L MDE GLD + ++ SL QS+ + + ++ + + L D
Sbjct: 166 AVKPKVLLMDEPCFGLDPIASMKV-ESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219
|
Length = 261 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP----KNQET- 921
L+GV+ RPG + L G SGAGK+TL+ ++ G + +G I SG+ KN+E
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS--AGKIWFSGHDITRLKNREVP 75
Query: 922 -FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
R G Q TVY+++ L + D R+ + ++ L+ +
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIP--LIIAGASGDDIRRRVSAALDKVGLLDKAKN 133
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1040
+ L G +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 134 FPIQLSG------GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1041 RTVVCTIH 1048
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 49/186 (26%), Positives = 73/186 (39%), Gaps = 52/186 (27%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYVSGSITISGYPKNQET 921
E +KG+ F +TAL+G SG+GK+T + L V+G I G
Sbjct: 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRG------- 86
Query: 922 FARISGYCEQTDIHSPHVTVYE-----SLVYSAWLRLPP-------------EVDSDTRK 963
DI+ + VYE +V+ R P E K
Sbjct: 87 ----------IDINRKEINVYEMRKHIGMVFQ---RPNPFAKSIYENITFALERAGVKDK 133
Query: 964 MFVEEVMELVELNPIREAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016
+ + E+VE + + AL + ++ LS Q++RL IA + P I+ MDE
Sbjct: 134 ---KVLDEIVETSLKQAALWDQVKDDLHKSALT-LSGGQQQRLCIARAIAVKPDILLMDE 189
Query: 1017 PTSGLD 1022
P S LD
Sbjct: 190 PASALD 195
|
Length = 267 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 6e-05
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 304 VLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQ 363
L++LGL AD + +SGG+R+R+ L L +DE ++ LD + +
Sbjct: 81 ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135
Query: 364 IVNSLRQSIHILNGTAVISL--LQPAPETYELFDDLILLSDGQIVYQG 409
++ LR+ T V+ L L A D +ILL DG+IV QG
Sbjct: 136 LLELLRRLARERGKTVVMVLHDLNLA---ARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 56/219 (25%), Positives = 84/219 (38%), Gaps = 50/219 (22%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF---- 224
LHDVS I+ L GP +GKTTLL L G G+V G +
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLL---YGALTPSRGQVRIAGEDVNRLRGRQ 73
Query: 225 VPQ--RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD 282
+P R + Q+ + + TV E +A +G R E+ RR AA
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------- 121
Query: 283 IDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG 342
L+ +GLE AD +SGG+++R+ +V
Sbjct: 122 ----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVN 154
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI 381
L DE + LD + +I++ L++ + GT VI
Sbjct: 155 SPPLLLADEPTGNLDPDLSERILDLLKRL-NKR-GTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-05
Identities = 50/264 (18%), Positives = 97/264 (36%), Gaps = 70/264 (26%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG-----ME 222
+++ VS +K + LLGP +GKTT + G + D SG++ +G M
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMH 70
Query: 223 E-------FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAA 275
+ ++PQ S + +TV E
Sbjct: 71 KRARLGIGYLPQEASIFRK--------LTVEE---------------------------- 94
Query: 276 NIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLT 335
+I +++ L +E+ + +L+ + + +SGG+R+R+
Sbjct: 95 ------NILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVE 143
Query: 336 TGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLL---QPAPETYE 392
L + L +DE G+D V +++ I IL I +L ET
Sbjct: 144 IARALATNPKFLLLDEPFAGVDPIA----VQDIQKIIKILKDRG-IGVLITDHNVRETLS 198
Query: 393 LFDDLILLSDGQIVYQGPRENVLE 416
+ D ++ +G+++ +G E +
Sbjct: 199 ITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 61/276 (22%), Positives = 114/276 (41%), Gaps = 59/276 (21%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL---KFSGRVTYNGHGMEEFVP 226
LH +S + + LT L+GP GK+T L L ++ D+ K +G + + G +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNI----- 73
Query: 227 QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
Y S+ DL + +R+ + + P + V ++ K A +K D +LI
Sbjct: 74 -----YGSKMDL----VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVK---DKELI 120
Query: 287 -------MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEM 339
+K A++ + K+ + D + SGGQ++R+
Sbjct: 121 DQRVEESLKQAAIWKETKDNL-------------------DRNAQAFSGGQQQRICIARA 161
Query: 340 LVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399
L + + +DE ++ LD ++ +I +L + H V LQ A + D
Sbjct: 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG---RISDQTAF 218
Query: 400 LSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFL 435
L +G ++ GP E + F P+++ +D+L
Sbjct: 219 LMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 6e-05
Identities = 35/204 (17%), Positives = 59/204 (28%), Gaps = 69/204 (33%)
Query: 876 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIH 935
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 936 SPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ 995
E + + + L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 996 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1047
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1048 HQPSI----DIFDAFDELLLMKRG 1067
+ + FD +++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 6e-05
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
E LVG S LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N
Sbjct: 570 ETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 52/242 (21%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD---LKFSGRVTYNGHGMEEFV 225
IL+++S ++ + GP GK+TLL +A + L F G + E +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DVSTLKPEAY- 75
Query: 226 PQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD--I 283
Q+ S Y +Q G+ TV + L F + N +PD +
Sbjct: 76 RQQVS-YCAQTPALFGD-TVEDNLIFPWQ-------------------IRNRRPDRAAAL 114
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
DL+ + A + +T+ +SGG+++R+ L
Sbjct: 115 DLLARFALPDSILTKNITE-----------------------LSGGEKQRIALIRNLQFM 151
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
+ L +DEI++ LD S I + + + N AV+ + + D +I L G
Sbjct: 152 PKILLLDEITSALDESNKRNIEEMIHRYVREQN-VAVLWITHDKDQAIRHADKVITLQPG 210
Query: 404 QI 405
Sbjct: 211 HA 212
|
Length = 223 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 64/273 (23%), Positives = 102/273 (37%), Gaps = 67/273 (24%)
Query: 151 EGFLNYLHVLPSRK-KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLK 209
G + L L RK + + L +S I+ + +GP +GKTT L L+G L
Sbjct: 17 PGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-- 74
Query: 210 FSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMT-------VRETLAFSARCQGVGP- 260
SG V G VP +R ++ + + G+ T V ++ A + P
Sbjct: 75 -SGEVRVAG-----LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA 128
Query: 261 RY-EVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319
R+ + L ELS ++L LE DT V
Sbjct: 129 RFKKRLDELS------------------------------------ELLDLEELLDTPV- 151
Query: 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILN--- 376
R +S GQR R L+ LF+DE + GLD ++R + N
Sbjct: 152 ----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQ----ENIRNFLKEYNRER 203
Query: 377 GTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
GT V+ + L ++++ G+++Y G
Sbjct: 204 GTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-05
Identities = 65/240 (27%), Positives = 101/240 (42%), Gaps = 61/240 (25%)
Query: 185 LLGPPSSGKTTLLLALAGKL----GKDLKFSGRVTYNGHGMEEFVPQRTSAYISQN-DLH 239
LLGP +GK+TL L G L G+ L + Y+ + E ++T + QN D
Sbjct: 33 LLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV--RKTVGIVFQNPDDQ 90
Query: 240 IGEMTVRETLAFSARCQGVGPRYEVL--QELSRREKAANIKPDPDIDLIMKAASLEGQEK 297
+ TV E +AF GP L +E+ +R K A +KA +EG E
Sbjct: 91 LFAPTVEEDVAF-------GPLNLGLSKEEVEKRVKEA-----------LKAVGMEGFEN 132
Query: 298 NVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLD 357
+SGGQ+KR+ +L + +DE ++GLD
Sbjct: 133 KPP-----------------------HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 358 SSTTYQIVNSL----RQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG-PRE 412
QI+ L ++ I I+ T + L P Y D + ++SDG+I+ +G P+E
Sbjct: 170 PMGASQIMKLLYDLNKEGITIIISTHDVDL---VP-VYA--DKVYVMSDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 46/229 (20%)
Query: 183 TLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR--TSAYISQNDLHI 240
T ++GP SGK+TLL +AG + SGRV NG + P S +N+L
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGF---ETPQSGRVLINGVDVTAAPPADRPVSMLFQENNL-F 82
Query: 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVV 300
+TV + + G+ P ++ E R+ I++ + L G EK
Sbjct: 83 AHLTVEQNVGL-----GLSPGLKLTAE--DRQA---------IEVALARVGLAGLEK--- 123
Query: 301 TDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSST 360
+ +SGG+R+R+ +LV L +DE LD +
Sbjct: 124 --------------------RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 361 TYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
+++ L +H V+ + + L ++ L +G+I QG
Sbjct: 164 RAEML-DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 73/292 (25%), Positives = 114/292 (39%), Gaps = 61/292 (20%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP- 226
++ ++ I LLGP GKTT+L +AG D SGR+ +G +
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84
Query: 227 QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
R + Q+ MTV E +AF R Q AA I P +
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP--------------AAEITP-----RV 125
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346
M+A L+++ LE A +SGGQ++R+ +V +
Sbjct: 126 MEA---------------LRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKV 165
Query: 347 LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406
L +DE + LD Q+ N L+ L T + + E + D ++++ DG+I
Sbjct: 166 LLLDESLSALDYKLRKQMQNELKALQRKLGIT-FVFVTHDQEEALTMSDRIVVMRDGRIE 224
Query: 407 YQG-PRENVLEFFERMGFKCPERKGVADFLQE-------VTSRKDQEQYWAN 450
G PRE + E P+ VA F+ E V R D+++ AN
Sbjct: 225 QDGTPRE-IYE--------EPKNLFVARFIGEINIFDATVIERLDEQRVRAN 267
|
Length = 375 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 59/242 (24%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
IL+++S ++ L+ GP GK+TLL +A + SG + + G + P+
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 228 R---TSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI- 283
+Y +Q G+ TV + L F +++ N +PDP I
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDPAIF 117
Query: 284 --DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
DL A KN+ +SGG+++R++ L
Sbjct: 118 LDDLERFALPDTILTKNI------------------------AELSGGEKQRISLIRNLQ 153
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL--FDDLIL 399
+ L +DEI++ LD S VN + IH I++L + E+ D +I
Sbjct: 154 FMPKVLLLDEITSALDESNK-HNVNEI---IHRYVREQNIAVLWVTHDKDEINHADKVIT 209
Query: 400 LS 401
L
Sbjct: 210 LQ 211
|
Length = 225 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-05
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 21/193 (10%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYVSGSITISG---YPKNQE 920
L VS +TA++G SG GK+T + + + V G +T G Y + +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 921 TFA--RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NP 977
A R G Q P ++Y+++ Y ++ D D R VEE + L +
Sbjct: 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDER---VEESLRRAALWDE 169
Query: 978 IREALVGLPGVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
+++ L SG LS Q++RL IA + +P +I MDEP S LD A + + +
Sbjct: 170 VKDQL----DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEE 225
Query: 1036 TVDTGRTVVCTIH 1048
+ TVV H
Sbjct: 226 LAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 64/225 (28%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH----GMEEFV 225
L+D+S + P L +L+GP +GKTTL+ + GK G V ++G + E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEH- 76
Query: 226 PQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYE---VLQELSRREKAANIKPDPD 282
I G+G +++ V + L+ RE +
Sbjct: 77 -------------RIARA-------------GIGRKFQKPTVFENLTVRE---------N 101
Query: 283 IDLIMKA---------ASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKR 333
++L + A L +E+ + D +L +GL D + +S GQ++
Sbjct: 102 LELALNRDKSVFASLFARLRAEERRRI-DELLATIGLGDERDRLAAL-----LSHGQKQW 155
Query: 334 LTTGEMLVGPARALFMDEISTGLDSSTTYQ---IVNSLRQSIHIL 375
L G +L + L +DE G+ + T + ++ SL IL
Sbjct: 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSIL 200
|
Length = 249 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 65/293 (22%), Positives = 110/293 (37%), Gaps = 72/293 (24%)
Query: 158 HVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217
+V +++++ I +L+GP SGKTT + + + SG + +
Sbjct: 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFID 61
Query: 218 GHGMEEFVP---QRTSAYISQNDLHIG---EMTVRETLAFSARCQGVGPRYEVLQELSRR 271
G + E P +R Y+ Q IG MTV E +A P+ + R
Sbjct: 62 GEDIREQDPVELRRKIGYVIQQ---IGLFPHMTVEENIALV-------PKLLKWPKEKIR 111
Query: 272 EKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQR 331
E+A D +L ++GL+ D +SGGQ+
Sbjct: 112 ERA---------------------------DELLALVGLD---PAEFADRYPHELSGGQQ 141
Query: 332 KRLTTGEMLVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLL 384
+R VG ARAL MDE LD T Q+ ++ + G ++ +
Sbjct: 142 QR-------VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR-LQQELGKTIVFVT 193
Query: 385 QPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQE 437
E + L D + ++ +G+IV G + +L + P VA+F+
Sbjct: 194 HDIDEAFRLADRIAIMKNGEIVQVGTPDEIL--------RSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 57/269 (21%), Positives = 96/269 (35%), Gaps = 51/269 (18%)
Query: 158 HVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTL---LLALAGKLGKDLKFSGRV 214
L K+ +L +VS I+ LLG GK+TL LL L + F G+
Sbjct: 15 GGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQD 74
Query: 215 TY--NGHGMEEFVPQRTSAYISQNDLHIG----EMTVRETLAFSARCQGVGPRYEVLQEL 268
Y + F +R + Q+ MTVR+ + R L E
Sbjct: 75 LYQLDRKQRRAF--RRDVQLVFQDS--PSAVNPRMTVRQIIGEPLR------HLTSLDES 124
Query: 269 SRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328
++ + A + L ++GL + D++ R +SG
Sbjct: 125 EQKARIAEL---------------------------LDMVGL----RSEDADKLPRQLSG 153
Query: 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP 388
GQ +R+ L + + +DE + LD I+ LR+ + GTA + +
Sbjct: 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHDLR 212
Query: 389 ETYELFDDLILLSDGQIVYQGPRENVLEF 417
+ ++ GQIV + +L F
Sbjct: 213 LVQSFCQRVAVMDKGQIVEECDVAQLLSF 241
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 28/205 (13%)
Query: 877 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFARISGYCEQTDI 934
G LT ++G G GK++L+ + G + G V S P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 935 HSP---HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL-------VG 984
P + TV E++ + S K + V + L P + L +G
Sbjct: 86 QKPWLLNATVEENITF----------GSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRT 1042
G++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT
Sbjct: 136 ERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRT 194
Query: 1043 VVCTIHQPSIDIFDAFDELLLMKRG 1067
+V H+ + D ++ MK G
Sbjct: 195 LVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR 924
E +K VS R G A++G +G+GK+TL +LAG SG I I+ +P + ++
Sbjct: 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGEILINDHPLHFGDYSF 84
Query: 925 ISG-----YCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
S + + +P + + + L LRL +++ + R+ + E + +V L P
Sbjct: 85 RSKRIRMIFQDPNTSLNPRLRIGQIL--DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDH 142
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 143 ANYY----PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1050
LS +++RL A L+ P +F+DE TS LD + + + ++ + G TV+ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRP 148
Query: 1051 SIDIFDAFDELLLMKRGG 1068
S+ F D +L + G
Sbjct: 149 SLWKF--HDRVLDLDGEG 164
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 27/200 (13%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR 924
E LKG++ + G + A+MG +G+GK+TL V+AG + G I G
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 925 IS------GYCEQTDIHSPHVTVYE--SLVYSAWLRL--PPEVDSDTRKMFVEEVMELVE 974
+ + Q I P V+ + L Y++ + PE+D + E ++LV
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG 138
Query: 975 LNP------IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028
++P + E G S ++KR I + + + +DE SGLD A I
Sbjct: 139 MDPSFLSRNVNE---------GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKI 189
Query: 1029 VMRTVRNTVDTGRTVVCTIH 1048
+ + + + +++ H
Sbjct: 190 IAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG-----HGME 222
T+L+DVS I+ + LLGP SGK+TLL +AG D SG + +G E
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDE 70
Query: 223 EFVPQRTSAYISQNDLHIGEMTVRETLAF 251
+R + Q+ +TV E +A
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 2e-04
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
+SGGQR+R+ L+ L +DE ++ LD T I+ +LR + G VI ++
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA---LAKGKTVI-VIA 152
Query: 386 PAPETYELFDDLILLSDGQ 404
T D +I+L DG+
Sbjct: 153 HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 42/246 (17%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRT 229
L ++ IK +T +LG +GK+TL L G L SGR+ ++G P
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGK------PIDY 72
Query: 230 SAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI-MK 288
S G M +RE++ V Q+ + +A++ D + +K
Sbjct: 73 SRK--------GLMKLRESVGM------------VFQDPDNQLFSASVYQDVSFGAVNLK 112
Query: 289 AASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348
E +++ D LK G+E + D+ +S GQ+KR+ +LV + L
Sbjct: 113 LPEDEVRKR---VDNALKRTGIE-----HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV 164
Query: 349 MDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF-DDLILLSDGQIVY 407
+DE + GLD +I+ L + L T +I+ + L+ D++ ++ +G+++
Sbjct: 165 LDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD--IDIVPLYCDNVFVMKEGRVIL 222
Query: 408 QG-PRE 412
QG P+E
Sbjct: 223 QGNPKE 228
|
Length = 283 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 64/265 (24%), Positives = 101/265 (38%), Gaps = 69/265 (26%)
Query: 179 PQRLTLLLGPPSSGKTTLLLALAGKL----------GKDLKFSGRVTYNGHGMEEFVPQR 228
+T L+G GK+TL + L+G L GK L +S R G+ + Q+
Sbjct: 26 LSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR------GLLA-LRQQ 78
Query: 229 TSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMK 288
+ + I + +AFS R GV E++RR A ++
Sbjct: 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRRVDEALT--------LVD 125
Query: 289 AASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348
A Q ++ +S GQ+KR+ LV AR L
Sbjct: 126 AQHFRHQP--------------------------IQCLSHGQKKRVAIAGALVLQARYLL 159
Query: 349 MDEISTGLDSSTTYQIVNSLR----QSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404
+DE + GLD + Q++ +R Q H++ + I L+ YE+ D + +L GQ
Sbjct: 160 LDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVYVLRQGQ 213
Query: 405 IVYQGPRENVL---EFFERMGFKCP 426
I+ G V E E+ G P
Sbjct: 214 ILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1049
LS +++R+ +A +L P + DEPT LD + A +V + V +G ++V T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 1050 PSIDIFDAFDELLLMKRG 1067
P + I D D+ + ++ G
Sbjct: 229 PEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 46/240 (19%), Positives = 88/240 (36%), Gaps = 44/240 (18%)
Query: 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQ 235
+ + +LGP +GK+TLL +AG SG + NG P +R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 236 NDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQ 295
+ +TV + + G+ P L +
Sbjct: 79 ENNLFAHLTVAQNIGL-----GLSP----------------------------GLKLNAE 105
Query: 296 EKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTG 355
++ V +GL + +SGGQR+R+ LV L +DE +
Sbjct: 106 QREKVEA-AAAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 356 LDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
LD + +++ + Q + ++ + + + D ++ L +G+I QG + +L
Sbjct: 160 LDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 58/222 (26%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLAL--AGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
L ++ I +++T L+GP GK+TLL L L + +K +G++T +G +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG--------E 70
Query: 228 RTSAYISQNDLHIG-----------EMTVRETLAFSARCQGVGPRYEVLQELSRREKAAN 276
I DL I M++ E +A+ R QG+ + +VL E+ R
Sbjct: 71 DIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDK-KVLDEVVERS---- 125
Query: 277 IKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTT 336
++ A+L + K+ LK G+SGGQ++RL
Sbjct: 126 ----------LRGAALWDEVKD-----RLKSHAF--------------GLSGGQQQRLCI 156
Query: 337 GEMLVGPARALFMDEISTGLDSSTTYQI---VNSLRQSIHIL 375
+ + MDE ++ LD T++I + L+++ I+
Sbjct: 157 ARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIV 198
|
Length = 249 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 52/189 (27%), Positives = 77/189 (40%), Gaps = 40/189 (21%)
Query: 858 GIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYVSGSITIS 913
+E +KG+S G AL+G SG+GK+ +++ +L + SGSI
Sbjct: 17 HQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFD 75
Query: 914 GYPKNQETFARISGYCEQT-------DIH----------SPHVTVYESLVYSAWLRLPPE 956
G E S E+ I +P T+ + L LRL
Sbjct: 76 G-----EDLLAAS---ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV--LRLHRG 125
Query: 957 VDSDTRKMFVEEVMELVELNPIREA---LVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1013
+ +R +EL+EL I E L P LS QR+R+ IA+ L P ++
Sbjct: 126 L---SRAAARARALELLELVGIPEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLI 180
Query: 1014 MDEPTSGLD 1022
DEPT+ LD
Sbjct: 181 ADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 16/214 (7%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGS-ITISGYPKN 918
PD + L +S + G TAL+G +G+GK+T+ ++ G S IT+ G
Sbjct: 16 PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT 75
Query: 919 QETF----ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE 974
+T ++ + D TV + + + R V V +V+ V
Sbjct: 76 AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVG 132
Query: 975 LNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
+ ++ + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 1035 N-TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
TV+ H ID + D++L++ G
Sbjct: 188 KLKKKNNLTVISITH--DIDEANMADQVLVLDDG 219
|
Length = 282 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 32/238 (13%)
Query: 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896
I F ++ + + Q D LK VS G T+++G +G+GK+T+ +
Sbjct: 6 SIIVFKNVSF--------QYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKL 54
Query: 897 LAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDI--HSPHVTVYESLV-YSAWLRL 953
+ G + SG I + + F ++ + I +P S+V Y L
Sbjct: 55 MIGIEK--VKSGEIFYNNQAITDDNFEKLR---KHIGIVFQNPDNQFVGSIVKYDVAFGL 109
Query: 954 PPE-VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1012
V D V E ++ V++ + + LS Q++R+ IA L NPS+I
Sbjct: 110 ENHAVPYDEMHRRVSEALKQVDMLERADY-----EPNALSGGQKQRVAIAGVLALNPSVI 164
Query: 1013 FMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFDAF--DELLLMKRG 1067
+DE TS LD A ++ VR + T++ H D+ +A D +++M +G
Sbjct: 165 ILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 49/221 (22%)
Query: 859 IPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918
+P + E LK +S +F PG ++G++GAGK+TL+ ++AG +G +
Sbjct: 14 VPPKK-EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--------EFNGEARP 64
Query: 919 QETFARISGYCEQTDIHSPHVTVYESL----------------VYSAWLRLPPEVDSDTR 962
GY Q P TV E++ + + + E D+D
Sbjct: 65 APGIKV--GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKF----AEPDADMD 118
Query: 963 KMFVE--EVMELVE----------LNPIREALVGLPG---VSGLSTEQRKRLTIAVELVA 1007
+ E E+ E+++ L +AL P V+ LS +R+R+ + L++
Sbjct: 119 ALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLS 178
Query: 1008 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
P ++ +DEPT+ LDA + A + + ++ G TVV H
Sbjct: 179 KPDMLLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 30/161 (18%)
Query: 879 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YVSGSITISGYPKNQETFARISGY 928
+TA++G SG GK+T +++++ KT G Y +I Y E G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV--EELRTNVGM 109
Query: 929 CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG---- 984
Q P ++Y+++ Y P++ K ++E++E +R A +
Sbjct: 110 VFQKPNPFPK-SIYDNVTYG------PKIHGIKDKKTLDEIVE----KSLRGAAIWDELK 158
Query: 985 ---LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 15/205 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L+ ++ + G ++G +G+GK+TL L G R G V S +G + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 925 ISGYCEQT-DIHSPHVTVYESLVYSAW-LRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
+ G Q + TV E L + L LPP + RK V+ + + L R
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPP---IEIRKR-VDRALAEIGLEKYRHR- 132
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042
LS Q + + +A L P + DE TS LD + V+ ++ + G+T
Sbjct: 133 ----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKT 188
Query: 1043 VVCTIHQPSIDIFDAFDELLLMKRG 1067
+V H +++ D +++M RG
Sbjct: 189 IVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 988 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1043
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1044 VCTIHQPSIDIFDAFDELLLMKR 1066
+ H P ++ + D+L+ +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-04
Identities = 66/281 (23%), Positives = 103/281 (36%), Gaps = 102/281 (36%)
Query: 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF- 224
P +L +S IK LLG GK+TLL L G + NG + ++
Sbjct: 352 PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYS 408
Query: 225 ----------VPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKA 274
V QR +H+ T+R+ L +
Sbjct: 409 EAALRQAISVVSQR---------VHLFSATLRDNLLLA---------------------- 437
Query: 275 ANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML--------RGI 326
P+ D + VL+ +GLE + D+ L R +
Sbjct: 438 ---APNAS-DEALIE--------------VLQQVGLEKLLE---DDKGLNAWLGEGGRQL 476
Query: 327 SGGQRKRLTTGEMLVGPARALF-------MDEISTGLDSSTTYQIVNSLRQSIHILNGTA 379
SGG+++RL G ARAL +DE + GLD+ T QI+ L + H N T
Sbjct: 477 SGGEQRRL-------GIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTV 527
Query: 380 VISLLQPAPETYEL-----FDDLILLSDGQIVYQGPRENVL 415
++ T+ L FD + ++ +GQI+ QG + +L
Sbjct: 528 LMI-------THRLTGLEQFDRICVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYVSGSITISGYPKNQ---- 919
LK ++ +TAL+G SG GK+T + + + G + G I + +P N
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNILS 89
Query: 920 ------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV 973
E RIS ++ + +++E++ Y +R R+ +EE +E
Sbjct: 90 PEVDPIEVRMRISMVFQKPNPFPK--SIFENVAYGLRIR------GVKRRSILEERVENA 141
Query: 974 ELNP-----IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
N +++ L L LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 142 LRNAALWDEVKDRLGDL--AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 38/157 (24%)
Query: 274 AANI---KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI--SG 328
A NI +PD I A L +V D IL L DT VG+ RG+ SG
Sbjct: 406 ANNIALGRPDATQQEIEHVARL----ASVHDD----ILRLPQGYDTEVGE---RGVMLSG 454
Query: 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQ---------SIHILNGTA 379
GQ++R++ L+ A L +D+ + +D T +QI+++LRQ S H L
Sbjct: 455 GQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRL---- 510
Query: 380 VISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416
S L A +++++ G I +G + + +
Sbjct: 511 --SALTEA-------SEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 59/259 (22%), Positives = 98/259 (37%), Gaps = 59/259 (22%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF--- 224
T+L V ++ L L+GP +GKTTLL A+ G L +G V G +E
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSAR 73
Query: 225 --------VPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAAN 276
VPQ TS E VR+ + E+ R +
Sbjct: 74 AASRRVASVPQDTSLSF--------EFDVRQVV-----------------EMGRTPHRSR 108
Query: 277 IKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTT 336
+ D +AA E+ V + D + +SGG+R+R+
Sbjct: 109 FDTWTETD---RAAVERAMERTGVAQFA---------------DRPVTSLSGGERQRVLL 150
Query: 337 GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396
L L +DE + LD + + + +R+ + +G ++ + D+
Sbjct: 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCDE 208
Query: 397 LILLSDGQIVYQGPRENVL 415
L+LL+DG++ GP +VL
Sbjct: 209 LVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 65/276 (23%), Positives = 102/276 (36%), Gaps = 75/276 (27%)
Query: 159 VLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG 218
V +T L DVS + + ++G +GK+TL+ + G + SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL---ERPTSGSVLVDG 66
Query: 219 HGMEEFVP------QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRRE 272
+ +R I Q+ + TV E +A GV P+ E E
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV-PKAE------IEE 119
Query: 273 KAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRK 332
+ +L+++GLE AD +SGGQ++
Sbjct: 120 RV---------------------------LELLELVGLEDKADAYPAQ-----LSGGQKQ 147
Query: 333 RLTTGEMLVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
R VG ARAL DE ++ LD TT I+ LR L T V+
Sbjct: 148 R-------VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLI--- 197
Query: 386 PAPETYE------LFDDLILLSDGQIVYQGPRENVL 415
T+E + D + ++ G++V +G E V
Sbjct: 198 ----THEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 52/209 (24%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLAL--AGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
L+D++ I R+T L+GP GK+TLL L + +G + YNG + +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD---- 77
Query: 228 RTSAYISQNDLHIGEM---------TVRETLAFSARCQGVGPRYEVLQELSRREKAANIK 278
+ A + IG + ++ E +A+ R G + K
Sbjct: 78 -SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGE------------KNKKT--- 121
Query: 279 PDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGE 338
D ++ +K A+L + K+ + D L +SGGQ++RL
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSAL-------------------SLSGGQQQRLCIAR 162
Query: 339 ML-VGPARALFMDEISTGLDSSTTYQIVN 366
L V P + MDE + LD T +I +
Sbjct: 163 TLAVNP-EVILMDEPCSALDPIATAKIED 190
|
Length = 253 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI 374
DT + + + R SGG+R+RL +L+ A + +DE + GLD T Q+ L +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL---LSLIFEV 144
Query: 375 LNGTAVISLLQPAPETYEL-----FDDLILLSDGQIVYQG 409
L +I + T+ L D ++ L +G+I+ QG
Sbjct: 145 LKDKTLIWI------THHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTD 933
G TA++G +G GK+TL+ L+ T G + + G + AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993
+TV E + + P + + RK E V + ++ I + V LS
Sbjct: 91 TTPGDITVQELVARGRYPHQP--LFTRWRKEDEEAVTKAMQATGITH--LADQSVDTLSG 146
Query: 994 EQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-04
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 880 TALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHS 936
T ++G+SG+GK+TL +L G SG I ++G+ T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQ----E 556
Query: 937 PHV---TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP------- 986
P++ ++ E+L+ A + +E+ E+ I++ + +P
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 987 --GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 40/224 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
LK VS G A++G +G+GK+T+ +L G + SG I I G ++E
Sbjct: 25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEIKIDGITISKENLKE 80
Query: 925 IS---GYCEQT-DIHSPHVTVYESLVYSAWL---RLPPEVDSDTRKM--FVEEVMELVEL 975
I G Q D TV + + + L ++PP+ KM ++++ + V
Sbjct: 81 IRKKIGIIFQNPDNQFIGATVEDDIAFG--LENKKVPPK------KMKDIIDDLAKKVG- 131
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRT 1032
+ + L P LS Q++R+ IA L NP II DE TS LD + + M
Sbjct: 132 --MEDYLDKEP--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187
Query: 1033 VRNTVDTGRTVVCTIHQPSIDIFDAF--DELLLMKRGGEEIYVG 1074
+R T +T++ H D+ +A D++++ G+ I G
Sbjct: 188 LRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 982 LVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
LVGL LS Q++R+ +A L P + DEPT+GLD + ++ N
Sbjct: 151 LVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDN 210
Query: 1036 TVDTGRTVVCTIH 1048
G+T++ H
Sbjct: 211 LNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 59/256 (23%)
Query: 165 KPLTILHDVSGIIKP-QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE 223
PL + + S ++P QR+ L+ G SGK+T+ +AG +SG + ++G EE
Sbjct: 492 PPL--IENFSLTLQPGQRVALV-GGSGSGKSTIAKLVAGLY---QPWSGEILFDGIPREE 545
Query: 224 FVPQRTSAYIS--QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
+ + ++ D+ + E TVR+ L PD
Sbjct: 546 IPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTI----------------------PDA 583
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
D+ K A++ I D + E +SGGQR+RL LV
Sbjct: 584 DLVRACKDAAIHDV-----------ITSRPGGYDAELA-EGGANLSGGQRQRLEIARALV 631
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI-----SLLQPAPETYELFDD 396
L +DE ++ LD T I ++LR+ T +I S ++ D+
Sbjct: 632 RNPSILILDEATSALDPETEKIIDDNLRRR----GCTCIIVAHRLSTIRDC-------DE 680
Query: 397 LILLSDGQIVYQGPRE 412
+I+L G++V +G E
Sbjct: 681 IIVLERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLR--QSIH------ILNGT 378
SGGQR+R+ L+ + +DE ++ LD S Q+++ LR Q H I +
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL 487
Query: 379 AVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416
AV+ L +I++ DG+IV QGP E V
Sbjct: 488 AVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-04
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 966 VEEVMELVELNPI--REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
V E +ELV + RE + LS Q++R+ IA + P II +DE TS LD
Sbjct: 121 VNEALELVGMQDFKEREP-------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1024 RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070
+++T++ D TV+ H +D D +L+MK G E
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 21/209 (10%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--VSGSITISGYPKNQETFAR 924
L+ ++ G AL+G SG+GK+T+ ++L T Y G I + G+ T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 925 ISGYCE--QTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE-LNPIREA 981
+ ++H + T+ ++ Y+ + E + +M M+ + ++ +
Sbjct: 415 LRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFINKMDNGLDT 472
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-- 1039
++G GV LS QR+R+ IA L+ + I+ +DE TS LD + R ++ +D
Sbjct: 473 VIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDELQ 527
Query: 1040 -GRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
RT + H+ S I A DE+L+++ G
Sbjct: 528 KNRTSLVIAHRLST-IEKA-DEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-04
Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 54/248 (21%)
Query: 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 897
++ F I + + +QG+ D VS + G A++G +GAGKTTL+++L
Sbjct: 334 AVEFRHITF--EFAN--SSQGVFD--------VSFEAKAGQTVAIVGPTGAGKTTLINLL 381
Query: 898 AGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESL-----VYSAWLR 952
++ G I I G + T R S + TV++ +R
Sbjct: 382 --QRVYDPTVGQILIDGI--DINTVTRES-------LRKSIATVFQDAGLFNRSIRENIR 430
Query: 953 LPPEVDSDTRKMFVEEVMELVELNPIRE----------ALVGLPGVSGLSTEQRKRLTIA 1002
L E +D EEV E + + LVG G + LS +R+RL IA
Sbjct: 431 LGREGATD------EEVYEAAKAAAAHDFILKRSNGYDTLVGERG-NRLSGGERQRLAIA 483
Query: 1003 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT---GRTVVCTIHQPSIDIFDAFD 1059
++ N I+ +DE TS LD A V+N +D RT H+ S + +A D
Sbjct: 484 RAILKNAPILVLDEATSALDVETEA----RVKNAIDALRKNRTTFIIAHRLST-VRNA-D 537
Query: 1060 ELLLMKRG 1067
+L + +G
Sbjct: 538 LVLFLDQG 545
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 52/188 (27%)
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETF 922
+ + LK ++ F +TA++G SG GK+TL+ L + VSG
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIVSG-------------- 59
Query: 923 ARISG--YCEQTDIHSPHVTVYE-----SLVYSAWLRLP----------PEVDSDTRKMF 965
AR+ G + +I+SP++ V +V+ P P + T +
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSR 119
Query: 966 VEEVMELVELNPIREALV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1014
++EV+E +R+A + GL LS Q++RL IA L P +I M
Sbjct: 120 LDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAIEPEVILM 171
Query: 1015 DEPTSGLD 1022
DEP S LD
Sbjct: 172 DEPCSALD 179
|
Length = 251 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 6e-04
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 24/163 (14%)
Query: 879 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YVSGSITISGYPKNQETFARISGYC 929
+TA +G SG GK+T + D++ G G Y G+ T S + E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 930 EQTDIHSP-HVTVYESLVYSAWLRLPPEVDSDTRKMF---VEEVMELVEL-NPIREALVG 984
++ +P +++++++ Y P + RK+ VE+ ++ L + +++ L
Sbjct: 170 QKP---TPFEMSIFDNVAYG-----PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD- 220
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
+ LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 221 -KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 40/179 (22%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITISG--- 914
E +K V G +TAL+G SG GK+T++ D++ G + G + G
Sbjct: 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDL 82
Query: 915 YPKN---QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVME 971
Y E RI +Q + ++YE++ + A + + ++ E
Sbjct: 83 YDPRVDPVEVRRRIGMVFQQPNPFPK--SIYENIAFGARI-----------NGYTGDMDE 129
Query: 972 LVELNPIREALV--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
LVE +R+A V G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 130 LVE-RSLRKAAVWDECKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L VS +PG + L+G +GAGK+TL+ V+ G V+ G K RI
Sbjct: 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG-----LVAPD---EGVIKRNGKL-RI- 69
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
GY Q ++ L + +LRL P +K + ++ V+ + +A P
Sbjct: 70 GYVPQ----KLYLDTTLPLTVNRFLRLRPGT----KKEDILPALKRVQAGHLIDA----P 117
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+ LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 118 -MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 9e-04
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 29/166 (17%)
Query: 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFARISGY 928
G G + ++G +G GKTT + +LAG + G + +S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEED-LKVS-Y-KPQYISPDYDG- 416
Query: 929 CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988
TV + L + S F E+++ + L + E V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV----- 453
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 318 VGDEMLRGISGGQRKRLTTGEMLVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQ 370
V + + G+SGGQ++R V ARAL +DE ++ LD T ++ L+
Sbjct: 93 VLENIALGLSGGQQQR-------VALARALAMDPDVLLLDEPTSALDPITRREVRALLKS 145
Query: 371 SIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404
+ G V+ + E L D +++L DG+
Sbjct: 146 -LQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 45/202 (22%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
++ VS R G + + G+ GAG+T L L G + SG I + G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDG------------ 320
Query: 927 GYCEQTDIHSPH---------VT-------------VYESLVYSAWLRLPPEVDSDTRKM 964
+ I SP V + E++ ++ R D RK
Sbjct: 321 ---KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKE 377
Query: 965 --FVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
E + + I+ P + LS ++++ +A L +P ++ +DEPT G+D
Sbjct: 378 RALAERYIRRLR---IKTPSPEQP-IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433
Query: 1023 ARAAAIVMRTVRNTVDTGRTVV 1044
A A + R +R G+ ++
Sbjct: 434 VGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 42/200 (21%), Positives = 73/200 (36%), Gaps = 54/200 (27%)
Query: 158 HVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217
+V +L D+S I ++GP +GK+TLL LAG+LG SG V
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKV- 381
Query: 218 GHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI 277
G ++ Y Q H E+ +T+
Sbjct: 382 GETVK-------IGYFDQ---HRDELDPDKTV---------------------------- 403
Query: 278 KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG 337
++ + + ++ V Y L G + ++ + +SGG++ RL
Sbjct: 404 -----LEELSEGFPDGDEQ--EVRAY-LGRFGF--TGEDQ--EKPVGVLSGGEKARLLLA 451
Query: 338 EMLVGPARALFMDEISTGLD 357
++L+ P L +DE + LD
Sbjct: 452 KLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 283 IDLIMKAASLE-----GQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG 337
+D + +A LE + K V LK++G + + D+ +S G+R R+
Sbjct: 383 LDNLTEAIGLELPDELARMKAV---ITLKMVGFDEEKAEEILDKYPDELSEGERHRVALA 439
Query: 338 EMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397
++L+ R + +DE + +D T + +S+ ++ + T +I + ++ D
Sbjct: 440 QVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII-VSHDMDFVLDVCDRA 498
Query: 398 ILLSDGQIVYQGPRENVLE 416
L+ DG+IV G E ++E
Sbjct: 499 ALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 45/196 (22%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRT 229
+ DVS KP + ++GP +GK+TL+ L RV F PQ
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ-----------RV---------FDPQ-- 388
Query: 230 SAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQE--LSRREKAANI---KPDPDID 284
S I + I +T R +L R V V Q+ L R NI +PD +
Sbjct: 389 SGRILIDGTDIRTVT-RASLR---RNIAV-----VFQDAGLFNRSIEDNIRVGRPDATDE 439
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
+ AA E+ D++ + DT+VG E R +SGG+R+RL L+
Sbjct: 440 EMRAAA-----ERAQAHDFIERKPD---GYDTVVG-ERGRQLSGGERQRLAIARALLKDP 490
Query: 345 RALFMDEISTGLDSST 360
L +DE ++ LD T
Sbjct: 491 PILILDEATSALDVET 506
|
Length = 588 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
LK +S G ++G +GAGK+TL+ ++AG + T SG + ++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984
++ E P +T E++ + + D + V+E++E EL +
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEK---VDEIIEFAELGDFID---- 142
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
P V S+ RL +V P I+ +DE + DA + + V+ +T+V
Sbjct: 143 QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201
Query: 1045 CTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEG 1089
H I D + ++ G + P ++I +E
Sbjct: 202 LVSHDLGA-IKQYCDRAIWLEHGQIRMEGSP-----EEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 42/208 (20%)
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV--SGSITISGYPKNQE 920
RL L+ VS + G L G SG+GK+TL+ L Y+ G I + +++
Sbjct: 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSL----YANYLPDEGQILV----RHEG 74
Query: 921 TFARISGYCEQTDIHSPHVTV-YESLVYSAWLRLPPEVDSDTRKMFVEEVME-------- 971
+ + + + T+ Y S +LR+ P V + ++ V E
Sbjct: 75 EWVDLVTAEPREVLEVRRTTIGY----VSQFLRVIPRVSA------LDVVAEPLLARGVP 124
Query: 972 -----------LVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020
L LN + E L L + S +++R+ IA + + I+ +DEPT+
Sbjct: 125 REVARAKAADLLTRLN-LPERLWSLAP-ATFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182
Query: 1021 LDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
LDA A+V+ +R G +V H
Sbjct: 183 LDATNRAVVVELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 33/206 (16%)
Query: 838 SITFDDI--RYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMD 895
SI F+D+ RY +P L G+S P ++G +GAGK+++++
Sbjct: 1234 SIKFEDVHLRYRPGLP-------------PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLN 1280
Query: 896 VLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLV-YSAWLRLP 954
L + G I I + TD+ + +S V +S +R
Sbjct: 1281 ALF--RIVELEKGRIMIDDCDVAKFGL---------TDLRRVLSIIPQSPVLFSGTVRFN 1329
Query: 955 PEVDSDTRKMFVEEVMELVEL-NPIREALVGL-----PGVSGLSTEQRKRLTIAVELVAN 1008
+ S+ + E +E + + I GL G S QR+ L++A L+
Sbjct: 1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389
Query: 1009 PSIIFMDEPTSGLDARAAAIVMRTVR 1034
I+ +DE T+ +D R +++ RT+R
Sbjct: 1390 SKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 56/200 (28%), Positives = 79/200 (39%), Gaps = 34/200 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
LK VS +TAL+G SG GK+T + L ++ KN ++S
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN------------RMNDLIKNCRIEGKVS 75
Query: 927 GYCEQTDIHSPHVTVYE-----SLVYSAWLRLP----------PEVDSDTRKMF---VEE 968
E DI+ P V V E +V+ P P + +K VE
Sbjct: 76 --IEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVEN 133
Query: 969 VMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028
+ L + P +S LS Q++RL IA L P II DEPTS LD + A
Sbjct: 134 ALRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR 192
Query: 1029 VMRTVRNTVDTGRTVVCTIH 1048
+ + N + T+V H
Sbjct: 193 IEDLIMN-LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 33/169 (19%)
Query: 871 SGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYVSGSITISGYPKNQETFARISG 927
G G V+ + G +G GKTT +LAG G V + IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 928 YCEQTDIHSPHVTVYESLVYSAWLR-LPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
TV + LR + ++ S + E+++ ++L + + V
Sbjct: 412 --------DYDGTVED------LLRSITDDLGS---SYYKSEIIKPLQLERLLDKNV--- 451
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 --KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 65/320 (20%), Positives = 122/320 (38%), Gaps = 56/320 (17%)
Query: 771 VALKYL--DPFGKPQAI--LSEEALAKKNACKTEEPVELSSGV-QSSYGEVRSFNEADQN 825
V KYL G+P L+EEA + E+P+ + Y V +
Sbjct: 301 VGFKYLWDTASGRPVLPTPLTEEAKRYIDRFVGEDPMAYPHLLLAPRYRMVEKLEGPIKF 360
Query: 826 RKRGMILPFEPHSITFDDIRYALDMPQEM-KAQGIPDDRLE--FLKGVSGAFRPGVLTAL 882
+ + DI+ + Q++ ++ G+ +E L+ ++ +PG + A+
Sbjct: 361 KNVTKTF------ASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAV 414
Query: 883 MGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942
+G SGAGKTTL+ ++ G + G + + P
Sbjct: 415 VGQSGAGKTTLLRMILG----------------------AQKGRG----EEKYRPDSGKV 448
Query: 943 ESLVYSAWLRLPPEVDSDTR-KMFVEEVMELVELNPIREALVGLPGVSG----------L 991
E + +P E + + +E + ++ G+S L
Sbjct: 449 EVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSEL 508
Query: 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQP 1050
ST Q++R +A L P+++ +DE + LD A V R + + G T++ H+P
Sbjct: 509 STGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568
Query: 1051 SIDIFDAF--DELLLMKRGG 1068
++ +A D L+L+ G
Sbjct: 569 --EVGNALRPDTLILVGYGK 586
|
Length = 593 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP 386
SGGQR+RL L G R L +DE ++ LD + +N ++ T ++ +
Sbjct: 98 SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAIAALKAAGATRIV--IAH 154
Query: 387 APETYELFDDLILLSDGQI 405
PET D +++L DG++
Sbjct: 155 RPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 46/214 (21%), Positives = 79/214 (36%), Gaps = 57/214 (26%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
IL D++ I+ ++ ++G SGK+TLL + D SG+V NG + P
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNG----QETPP 64
Query: 228 RTS-----------AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAAN 276
S Y+ QN I TV E L
Sbjct: 65 LNSKKASKFRREKLGYLFQNFALIENETVEENL--------------------------- 97
Query: 277 IKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTT 336
DL +K L +EK L+ +GL + + + +SGG+++R+
Sbjct: 98 -------DLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYE-----LSGGEQQRVAL 145
Query: 337 GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQ 370
++ P + DE + LD ++++ L +
Sbjct: 146 ARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 54/207 (26%), Positives = 81/207 (39%), Gaps = 46/207 (22%)
Query: 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ--RTSAYIS 234
++P LLG +GKTT L G SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 235 QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEG 294
Q D +T RE L AR +GV P E+ EK AN
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV-PAEEI-------EKVAN------------------ 2052
Query: 295 QEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEIST 354
+ ++ LGL + AD + G SGG +++L+T L+G + +DE +T
Sbjct: 2053 --------WSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 355 GLDSSTTYQIVNSLRQSIHILNGTAVI 381
G+D + N++ I G AV+
Sbjct: 2100 GMDPQARRMLWNTIVSIIR--EGRAVV 2124
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 42/249 (16%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME------- 222
LH V I + LLGP SGK+TLL L+G + D + G ++
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 223 EFVPQRT-SAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEV-LQELSRREKAANIKPD 280
+ R + YI Q + ++V E + A G P + +R +K ++
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGA--LGSTPFWRTCFSWFTREQKQRALQ-- 135
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
L +G+ A V +SGGQ++R+ L
Sbjct: 136 -----------------------ALTRVGMVHFAHQRVST-----LSGGQQQRVAIARAL 167
Query: 341 VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400
+ A+ + DE LD + ++++LR I+ +G V+ L + ++ L
Sbjct: 168 MQQAKVILADEPIASLDPESARIVMDTLR-DINQNDGITVVVTLHQVDYALRYCERIVAL 226
Query: 401 SDGQIVYQG 409
G + Y G
Sbjct: 227 RQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 46/247 (18%), Positives = 91/247 (36%), Gaps = 44/247 (17%)
Query: 177 IKPQRLTLLLGPPSSGKTTLLLAL--AGKLGKDLKFSGRVTYNGH-----GMEEFVPQRT 229
++ + L+GP GKTT L A+ L + +GR+ +G ++ +R
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86
Query: 230 SAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKA 289
+ Q M+V + + + G+ R +++ R ++
Sbjct: 87 VGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS---------------LRG 131
Query: 290 ASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFM 349
A+L + K+ + G+SGGQ++RL L L M
Sbjct: 132 AALWDEVKDRLKTPA-------------------TGLSGGQQQRLCIARALAVEPEILLM 172
Query: 350 DEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
DE ++ LD ++T +I + + + T +I + + + D G +V G
Sbjct: 173 DEPTSALDPASTARIEDLMTDLKKV---TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229
Query: 410 PRENVLE 416
P + +
Sbjct: 230 PTDQLFT 236
|
Length = 252 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 43/234 (18%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRT 229
L V+ I+ L+G GK+TLL ++ G SG V G + E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLIS---GLAQPTSGGVILEGKQITEPGPDRM 57
Query: 230 SAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKA 289
+ QN + +TVRE +A + VL +LS+ E+ A + + I L+
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRAIV--EEHIALV--- 102
Query: 290 ASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFM 349
GL AD G +SGG ++R+ L + L +
Sbjct: 103 -------------------GLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 350 DEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
DE LD+ T + L Q I + V+ + E L D +++L++G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 56/252 (22%), Positives = 94/252 (37%), Gaps = 41/252 (16%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAG--KLGKDLKFSGRVTYNGHG---MEE 223
+L V+ I +T L+GP SGK+TLL +L + + SG V +G M+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 224 FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
+R + Q I +++ E +A +G + L + S++E ++
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVA-------LGLKLNRLVK-SKKELQERVR----- 124
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
EK + D V L +SGGQ++RL L
Sbjct: 125 ---------WALEKAQLWDEVKDRLDAPAGK-----------LSGGQQQRLCIARALAFQ 164
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
L DE + LD T +I + + + ++ + + + D + L G
Sbjct: 165 PEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 404 QIVYQGPRENVL 415
QIV GP V
Sbjct: 222 QIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 55/229 (24%), Positives = 90/229 (39%), Gaps = 47/229 (20%)
Query: 150 LEGFLNYLHVLPS-RKKPLT-ILHDVSGIIKPQRLTLLLGPPSSGKTT---LLLALAGKL 204
L+G + + +V + +P T +L DVS + P +T L+GP SGK+T LL
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 205 GKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEV 264
G G+V +G + Q Y LH V + AR
Sbjct: 68 G------GQVLLDGKP----ISQYEHKY-----LHSKVSLVGQEPVLFAR---------- 102
Query: 265 LQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324
S ++ A + + +AA I L DT VG+ +
Sbjct: 103 ----SLQDNIAYGLQSCSFECVKEAAQKAHAHSF--------ISELASGYDTEVGE---K 147
Query: 325 G--ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQS 371
G +SGGQ++R+ L+ + L +DE ++ LD+ + Q+ +L
Sbjct: 148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDW 196
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 34/204 (16%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLAL--------AGKLGKDLKFSGRVTY-NGHG 220
L VS I + +T L+GP GK+T L L A ++ ++ G+ Y +G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 221 MEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPD 280
+ E + + S N ++RE +++ R G + + L R +K A D
Sbjct: 121 LVELRKRVGMVFQSPNPF---PKSIRENISYGPRKHGDINTGLLARLLGRDDKDAE---D 174
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
++ ++ A+L + + + D L G+SGGQ++RL L
Sbjct: 175 ELVERSLRQAALWDEVNDRLDDNAL-------------------GLSGGQQQRLCIARCL 215
Query: 341 VGPARALFMDEISTGLDSSTTYQI 364
+ MDE ++ LD T +I
Sbjct: 216 AVDPEVILMDEPASALDPIATSKI 239
|
Length = 305 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 40/201 (19%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLAL--AGKLGKDLKFSGRVTYNGHGMEE---- 223
L+D++ I ++T L+GP GK+T L L L ++K G V +G + +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 224 FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
V R + + M++ + +A+ R G+ + E+ D +
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKEL---------------DKIV 124
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
+ +K A+L + K+ + LK +SGGQ++RL +
Sbjct: 125 EWALKKAALWDEVKDDLKKSALK-------------------LSGGQQQRLCIARTIAVK 165
Query: 344 ARALFMDEISTGLDSSTTYQI 364
+ MDE ++ LD +T +I
Sbjct: 166 PDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 60/246 (24%), Positives = 93/246 (37%), Gaps = 55/246 (22%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRT 229
LH+VS I + L+G +GKTTLL L G SGR+ ++G + ++ +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD---PRATSGRIVFDGKDITDWQTAKI 77
Query: 230 S----AYISQNDLHIGEMTVRETLA---FSARCQGVGPRYEVLQELSRREKAANIKPDPD 282
A + + MTV E LA F A R + + EL R
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL---------- 127
Query: 283 IDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG 342
E+ + A TM SGG+++ L G L+
Sbjct: 128 ------------HERRIQR------------AGTM---------SGGEQQMLAIGRALMS 154
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402
R L +DE S GL QI +++ Q G + + Q A + +L D +L +
Sbjct: 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKLADRGYVLEN 212
Query: 403 GQIVYQ 408
G +V +
Sbjct: 213 GHVVLE 218
|
Length = 237 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 179 PQRLTLLLGPPSSGKTTLLLALAGKLGKD 207
P + L++GPP SGKTTL ALA +LG
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 42/206 (20%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRT 229
+ DVS K + ++GP +GKTTL+ L + V T
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLL----------------------QRVYDPT 388
Query: 230 SAYISQNDLHIGEMTVRETL--AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIM 287
I + + I +T RE+L + + Q G L S RE + + +
Sbjct: 389 VGQILIDGIDINTVT-RESLRKSIATVFQDAG-----LFNRSIRENIRLGREGATDEEVY 442
Query: 288 KAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARAL 347
+AA + D++LK DT+VG+ R +SGG+R+RL ++ A L
Sbjct: 443 EAA-----KAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPIL 493
Query: 348 FMDEISTGLDSSTTYQI---VNSLRQ 370
+DE ++ LD T ++ +++LR+
Sbjct: 494 VLDEATSALDVETEARVKNAIDALRK 519
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 57/280 (20%), Positives = 109/280 (38%), Gaps = 65/280 (23%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLL--LALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
+LHD++ IK ++T +GP GK+T L L L + G + + G
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR---- 152
Query: 227 QRTSAYISQNDLH--IG---------EMTVRETLAFSARCQGVGPRYEVLQELSRREKAA 275
S IS +L IG EM++ + +A+ R G+ R ++L+++ +
Sbjct: 153 ---SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDR-KILEKIVEKS--- 205
Query: 276 NIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLT 335
+K+A+L + K+ + D+ +SGGQ++RL
Sbjct: 206 -----------LKSAALWDEVKDDL-------------------DKAGNALSGGQQQRLC 235
Query: 336 TGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFD 395
+ L MDE ++ LD T +I + + + ++I + + + D
Sbjct: 236 IARAIALEPEVLLMDEPTSALDPIATAKIEELI---LELKKKYSIIIVTHSMAQAQRISD 292
Query: 396 DLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFL 435
+ + G I G + + F P+ K D++
Sbjct: 293 ETVFFYQGWIEEAGETKTI--------FIHPKNKRTKDYI 324
|
Length = 329 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 65/290 (22%), Positives = 110/290 (37%), Gaps = 75/290 (25%)
Query: 162 SRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221
+R P T L+ ++ I L ++G GK++LL AL ++ K G V G
Sbjct: 647 ARDLPPT-LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGS-- 700
Query: 222 EEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
+VPQ+ A+I QND ++RE + F Y+ E A + P
Sbjct: 701 VAYVPQQ--AWI-QND------SLRENILFG--KALNEKYYQ-----QVLEACALL---P 741
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
D++++ E EK V +SGGQ++R++ +
Sbjct: 742 DLEILPSGDRTEIGEKGV-------------------------NLSGGQKQRVSLARAVY 776
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNG------TAVISLLQPAPETYELFD 395
A D+ + +D+ I + +L T IS L P+ D
Sbjct: 777 SNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYL---PQV----D 829
Query: 396 DLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGV-ADFLQEVTSRKDQ 444
+I++S G+I G + +L +R G A+FL+ + Q
Sbjct: 830 VIIVMSGGKISEMGSYQELL-----------QRDGAFAEFLRTYAPDEQQ 868
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 14/172 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVL---AGRKTGGYVSGSITISGY----PK-N 918
++G+S +TA++G SG GK+T + L + + V G + G P+ N
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NP 977
R G Q P +++YE++ Y +R+ ++ VE ++ L
Sbjct: 83 INRLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQE 139
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
+++ L GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 140 VKDKLN--KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETF 922
+E +K +S R G A++G +G+GK+TL +LAG SG + I +P + +
Sbjct: 25 TVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTSGELLIDDHPLHFGDY 82
Query: 923 A----RISG-YCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
+ RI + + + +P + + L + LRL +++ + R+ + E + V L P
Sbjct: 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLP 140
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+ P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 141 --DHASYYPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 23/101 (22%)
Query: 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQ---- 370
+ + E L+ +SGG ++RL + L+ L +DE ++GLD + + LR+
Sbjct: 86 ENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE 144
Query: 371 ------SIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405
S HIL E L D + +L++G+I
Sbjct: 145 GKTILLSSHILE------------EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 39/221 (17%)
Query: 164 KKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE 223
K +L VS I + ++G SGK+TLL L G D SG V +NG
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLG---GLDNPTSGEVLFNG----- 66
Query: 224 FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI 283
Q S +S N+ ++ + L F + + P + L+ ++ P
Sbjct: 67 ---QSLSK-LSSNER--AKLR-NKKLGFIYQFHHLLPDFTALENVA--------MP---- 107
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
LI K + E +E+ +L+ +GLE + + +SGG+R+R+ LV
Sbjct: 108 LLIGKKSVKEAKER---AYEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALVNQ 159
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLL 384
+ DE + LD++ I + + + LN S L
Sbjct: 160 PSLVLADEPTGNLDNNNAKIIFDLMLE----LNRELNTSFL 196
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 59/257 (22%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKF----SGRVTYNGHGMEEF 224
IL+ +S I + ++G +GK+T+L L +F SG +T +G + +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLL-------FRFYDVNSGSITIDGQDIRDV 330
Query: 225 VPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIK-PDPDI 283
Q S R G+ P+ VL + A NIK PD
Sbjct: 331 TQQ--SLR---------------------RAIGIVPQDTVLFNDTI---AYNIKYGRPDA 364
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
A+ E + + I L DT VG+ L+ +SGG+++R+ ++
Sbjct: 365 TAEEVGAAAEAAQIHDF------IQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKN 417
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI-----SLLQPAPETYELFDDLI 398
L +DE ++ LD+ T I +LR+ T ++ S + A D++I
Sbjct: 418 PPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTIIDA-------DEII 468
Query: 399 LLSDGQIVYQGPRENVL 415
+L +G+IV +G E +L
Sbjct: 469 VLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 284 DLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGP 343
D I L+G EKNV +Y L I+GL + ++ +SGG+ +R++ L
Sbjct: 95 DNIEYGPMLKG-EKNVDVEYYLSIVGL----NKEYATRDVKNLSGGEAQRVSIARTLANN 149
Query: 344 ARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403
L +DE ++ LD ++T +I+ L + VI + + + D L+ G
Sbjct: 150 PEVLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208
Query: 404 QIVYQGPRENVLEFFE 419
+V +FF
Sbjct: 209 ILVEYA---KTYDFFT 221
|
Length = 241 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTA 379
D++ SGG ++RL LV R +FMDE + GLD S ++++ LR + L
Sbjct: 146 DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 380 VISLLQPAPETYE------LFDDLILLSDGQIVYQGPRENVL 415
VI T++ L L+++ G++V G + VL
Sbjct: 206 VIV-------THDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240
|
Length = 258 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 69/288 (23%), Positives = 114/288 (39%), Gaps = 82/288 (28%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLAL-------AGKL---GKDLKFSGRVTYNGH 219
++D S ++ + +++G SGK+TL+ L G++ GKD+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDI-----AKLSAA 98
Query: 220 GMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKP 279
+ E ++ + + Q+ + TV E +AF QGV P+ E R E+A
Sbjct: 99 ELREL-RRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PKAE------REERAL---- 146
Query: 280 DPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEM 339
L+++GLE AD + +SGG ++R
Sbjct: 147 -----------------------EALELVGLEGYADKYPNE-----LSGGMQQR------ 172
Query: 340 LVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAV-ISLLQPAPETY 391
VG ARAL MDE + LD ++ + L + L T V I+ E
Sbjct: 173 -VGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT--HDLDEAL 229
Query: 392 ELFDDLILLSDGQIVYQG-PRENVLEFFERMGFKCPERKGVADFLQEV 438
+ D + ++ DG+IV G P E +L P V DF++ V
Sbjct: 230 RIGDRIAIMKDGEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-R 1041
VG G S LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +
Sbjct: 1352 VGPYGKS-LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410
Query: 1042 TVVCTIHQ 1049
T++ H+
Sbjct: 1411 TIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 50/200 (25%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
L L +++ I +LT+++G GK++LLLA+ LG+ G+V ++ E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAI---LGEMQTLEGKVHWSNKNESEPSF 70
Query: 227 QRTS-------AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKP 279
+ T AY +Q + TV E + F + RY+ + + A +++P
Sbjct: 71 EATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 280 DPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI--SGGQRKRLTTG 337
D D+ L T +G+ RGI SGGQR+R+
Sbjct: 122 DIDL--------------------------LPFGDQTEIGE---RGINLSGGQRQRICVA 152
Query: 338 EMLVGPARALFMDEISTGLD 357
L +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 26/176 (14%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG----- 914
P+ ++ L GVS G A++G SG GK+TL +L +T G + G
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLLK 81
Query: 915 YPKNQETFARISGYCEQTDIHSPHVTVYESL----VYSAWLRLPPEVDSD----TRKMFV 966
+ R Q +P Y SL L P +++ R+
Sbjct: 82 ADPEAQKLLRQK---IQIVFQNP----YGSLNPRKKVGQILEEPLLINTSLSAAERREKA 134
Query: 967 EEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
+M V L P E P + S QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 135 LAMMAKVGLRP--EHYDRYPHM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|225429 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 39/219 (17%), Positives = 70/219 (31%), Gaps = 49/219 (22%)
Query: 850 MPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-----GRKTGG 904
M E + I E K + G G L + G +G GK+ L A
Sbjct: 1 MMVEELKKIIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVT 60
Query: 905 YVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKM 964
YVS +T+ + K E+ Y D+ S + + L++ P + +
Sbjct: 61 YVSTELTVREFIKQMESL----SY----DV-SDFL-LSGRLLFFPVNLEPVNWGRRSARK 110
Query: 965 FVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
++ ++E +R + + + + E
Sbjct: 111 LLDLLLE---------------------FIKRWEKDVIIIDSLSAFATYDSE-------D 142
Query: 1025 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL 1063
A M +R D G+ ++ T+H A DE +L
Sbjct: 143 AVLNFMTFLRKLSDLGKVIILTVHP------SALDEDVL 175
|
Length = 235 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 50/239 (20%), Positives = 103/239 (43%), Gaps = 28/239 (11%)
Query: 839 ITFDDIRY--ALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896
I D++ Y A P E KA L S F+ +T ++G +G+GK+T++ +
Sbjct: 7 IILDNVSYTYAKKTPFEFKA----------LNNTSLTFKKNKVTCVIGTTGSGKSTMIQL 56
Query: 897 LAG---RKTGGYVSGSITISGYPKNQETFARISGYCEQTDI--HSPHVTVYESLVYSAWL 951
G +TG + G I P N + + ++ + P +++ +
Sbjct: 57 TNGLIISETGQTIVGDYAI---PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIA 113
Query: 952 RLPPEVDSDTRKMF--VEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANP 1009
P + + ++ + V E+++LV+L + + P LS Q++R+ +A + +
Sbjct: 114 FGPVNLGENKQEAYKKVPELLKLVQLP--EDYVKRSP--FELSGGQKRRVALAGIIAMDG 169
Query: 1010 SIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ + +DEPT GLD + + R + + ++ H + DE+++M G
Sbjct: 170 NTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 36/211 (17%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR 228
+LH+VS I + ++G SGK+TLL L G D SG V +NG M +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLG---GLDTPTSGDVIFNGQPMS----KL 76
Query: 229 TSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMK 288
+SA + E+ ++ L F + + P + L+ ++ LI K
Sbjct: 77 SSAAKA-------ELRNQK-LGFIYQFHHLLPDFTALENVAMPL------------LIGK 116
Query: 289 AASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348
E + +L +GLE A+ + +SGG+R+R+ LV R +
Sbjct: 117 KKPAEINSR---ALEMLAAVGLEHRANHRPSE-----LSGGERQRVAIARALVNNPRLVL 168
Query: 349 MDEISTGLDSSTTYQIVNSLRQSIHILNGTA 379
DE + LD+ I L ++ L GTA
Sbjct: 169 ADEPTGNLDARNADSIFQ-LLGELNRLQGTA 198
|
Length = 233 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 58/221 (26%)
Query: 848 LDMP--QEMKAQGIPDDRLEFLKG-----VSGAFRPGVLTALMGVSGAGKTTLMDVLAG- 899
L++P + +A G P +E L G +S R G + L GV GAG+T L + L G
Sbjct: 253 LELPGNRRQQAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL 312
Query: 900 RKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDS 959
R G I + +E I+ S + LVY LP D
Sbjct: 313 RPA---RGGRIML----NGKE----INAL-------STAQRLARGLVY-----LPE--DR 347
Query: 960 DTRKMFVE-----EVMELVE------LNPIREALV--------------GLPGVSGLSTE 994
+ ++++ V L + P RE V LS
Sbjct: 348 QSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGG 407
Query: 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
++++ IA L A+P ++ +DEPT G+D A + + +R+
Sbjct: 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS 448
|
Length = 510 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025
LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.004
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 999 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1052
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.004
Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 41/246 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY-------PKNQ 919
+K S A G + +MG+SG+GK+T++ +L + G + I G + +
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 920 ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
E + Q+ PH+TV ++ + L ++++ R+ E+ ++ + +
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMEL---AGINAEERR---EKALDALRQVGLE 155
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------V 1033
P LS R+R+ +A L NP I+ MDE S LD ++RT V
Sbjct: 156 NYAHSYP--DELSGGMRQRVGLARALAINPDILLMDEAFSALDP-----LIRTEMQDELV 208
Query: 1034 RNTVDTGRTVVCTIHQPSIDIFDAF---DELLLMKRGGEEIYVGP----LGRHCSQLIK- 1085
+ RT+V H D+ +A D + +M+ GE + VG L + ++
Sbjct: 209 KLQAKHQRTIVFISH----DLDEAMRIGDRIAIMQ-NGEVVQVGTPDEILNNPANDYVRT 263
Query: 1086 YFEGID 1091
+F G+D
Sbjct: 264 FFRGVD 269
|
Length = 400 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1436 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-251 Score=2311.85 Aligned_cols=1339 Identities=53% Similarity=0.918 Sum_probs=1254.7
Q ss_pred CchhhhhHHHHhhCCchhhhhhccccccCCCcceeccCCCChhhhHHHHHHHHHhcccchHHHHHHHHHHHHhcCCCCCc
Q 046196 39 DDDEALTWAAIEKLPTYLRVQRGMLTEDEGQAREVDIKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPT 118 (1436)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1436)
||||+|+|||+|||||++| +++.+... .++|+.++++.+++.++++..+..++|+++++.++++|.+++ +.|.
T Consensus 13 ~~e~~~~~a~~~~~pt~~~---~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~p~ 85 (1391)
T KOG0065|consen 13 EDEEALRWAAIERLPTFDR---SLLRSIFE--SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--ELPT 85 (1391)
T ss_pred hhHHHHHHHHHhcCccccc---hhhhhhcc--CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cCCc
Confidence 4999999999999999999 55543211 179999999999999999999999999999999999999998 8899
Q ss_pred eeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHH
Q 046196 119 IEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLL 198 (1436)
Q Consensus 119 ~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~ 198 (1436)
++++++++.+++++..| ||+.|...+..+..+...+.. +++..+||+|+|+.++|||+++++|||||||||||+
T Consensus 86 ~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllk 159 (1391)
T KOG0065|consen 86 IEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLK 159 (1391)
T ss_pred eEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHHHH
Confidence 99999999999998765 999999999888877766654 455578999999999999999999999999999999
Q ss_pred HHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCC
Q 046196 199 ALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIK 278 (1436)
Q Consensus 199 ~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (1436)
+|+|.++...+..|+|+|||++.+++.+++.++|++|+|.|++.|||||+|+|+++|++++.|++ +..|+++..
T Consensus 160 al~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~--- 233 (1391)
T KOG0065|consen 160 ALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA--- 233 (1391)
T ss_pred HHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH---
Confidence 99999998877889999999999999999999999999999999999999999999999999887 666766542
Q ss_pred CCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCCh
Q 046196 279 PDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDS 358 (1436)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~ 358 (1436)
.++|++++++||++|+||+|||++.||+||||||||+||+++++++++++|||+|+|||+
T Consensus 234 --------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDS 293 (1391)
T KOG0065|consen 234 --------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDS 293 (1391)
T ss_pred --------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccH
Confidence 268999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 046196 359 STTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEV 438 (1436)
Q Consensus 359 ~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 438 (1436)
+|+.+++++|+++++..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||++++
T Consensus 294 sTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~v 373 (1391)
T KOG0065|consen 294 STAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEV 373 (1391)
T ss_pred HHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHH
Q 046196 439 TSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLM 518 (1436)
Q Consensus 439 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~ 518 (1436)
++++++.++|..+..++.+.++.||.+.|.+++.++++..+++.++++.+.++.++..++|..+.|+|++.|+.|+++++
T Consensus 374 ts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~ 453 (1391)
T KOG0065|consen 374 TSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLM 453 (1391)
T ss_pred hcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccc
Q 046196 519 KRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFP 598 (1436)
Q Consensus 519 ~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~ 598 (1436)
+||.+++.+++++.+++|+++|++|+++.+ ++..++..+.|++||++++.+|++++|+.++++++|||+|||+..|||
T Consensus 454 k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~ 531 (1391)
T KOG0065|consen 454 KRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYP 531 (1391)
T ss_pred hCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccC
Confidence 999999999999999999999999999985 556677889999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 046196 599 AWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANL 678 (1436)
Q Consensus 599 ~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l 678 (1436)
+||+.++.+++++|.+++++++|.+|+||++|+.+++++||++++++++++++++++||+++++++++..|++++++..+
T Consensus 532 p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L 611 (1391)
T KOG0065|consen 532 PWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLL 611 (1391)
T ss_pred hHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCCccccCCCCC---------------CCchhHHHHhhcC
Q 046196 679 TVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPPNS---------------TEPLGVVILKSRG 743 (1436)
Q Consensus 679 ~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~~~---------------~~~~g~~~l~~~g 743 (1436)
++.+++||+|+..+||+||+|++|++|++|+++++++|||++++|.|.|.++ ....|..+++.++
T Consensus 612 ~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~ 691 (1391)
T KOG0065|consen 612 VLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRD 691 (1391)
T ss_pred HHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEeccc
Confidence 9999999999999999999999999999999999999999999999984321 3567899999999
Q ss_pred CC-----CCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCCCCccccccccccccccccc
Q 046196 744 LF-----PNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRS 818 (1436)
Q Consensus 744 ~~-----~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1436)
+. ...+|+|+++|+++||+++|++++.+++.|+++....+.++..+...++..... .+.. .+.+.
T Consensus 692 ~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~-------~~~~---~~~~~ 761 (1391)
T KOG0065|consen 692 YLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS-------AGSS---SEIEK 761 (1391)
T ss_pred ccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh-------cccc---ccccc
Confidence 88 778899999999999999999999999999999888877765433222111100 0000 00000
Q ss_pred ccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHc
Q 046196 819 FNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
..+.....++++..|+.+..++++||.|.+++|.+++.++ +++++|+|||+.++||.++||||+||||||||||+|+
T Consensus 762 ~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA 838 (1391)
T KOG0065|consen 762 LDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLA 838 (1391)
T ss_pred cccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHh
Confidence 0111111355778888899999999999999998887665 6788999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 046196 899 GRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978 (1436)
Q Consensus 899 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~ 978 (1436)
||++.|.++|+|+|||+|.++..++|.+|||+|+|.|.|.+||+|.|.|+|+||+|.+++.+++.++||+|++.+||.++
T Consensus 839 ~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~ 918 (1391)
T KOG0065|consen 839 GRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY 918 (1391)
T ss_pred cCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Q 046196 979 REALVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDA 1057 (1436)
Q Consensus 979 ~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p-~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~ 1057 (1436)
+|.+||.|| +|||.+|||||+||++|++|| .||||||||||||++++..|++.+|+++++|+|||||+||||.++++.
T Consensus 919 ~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~ 997 (1391)
T KOG0065|consen 919 ADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEA 997 (1391)
T ss_pred hhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHH
Confidence 999999998 999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred hCeEEEEecCcEEEEEcCCCcchhHHHHHhhhCCCCCCCCCCCCcccceeeccCchhhhhhhhcHHHHHhhcHhhHhHHH
Q 046196 1058 FDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKE 1137 (1436)
Q Consensus 1058 ~D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 1137 (1436)
||++++|++||++||+||+|++++++++||++++|++ |++..|||||||||++.+.+.+.+.||+++|++|++|+++++
T Consensus 998 FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e 1076 (1391)
T KOG0065|consen 998 FDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKE 1076 (1391)
T ss_pred HhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHH
Confidence 9999999999999999999999999999999999886 555559999999999998888888999999999999999999
Q ss_pred HHHhhCCCCCC-CCCCcccccccCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHH
Q 046196 1138 MIKELSIPPPG-SKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLF 1216 (1436)
Q Consensus 1138 ~~~~~~~~~~~-~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~ 1216 (1436)
++++++.|+++ +.+..++++|++|+|.|++.|+|||+++|||+|+|+++|++++++.||++|++||++|+ ++|+++
T Consensus 1077 ~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lq 1153 (1391)
T KOG0065|consen 1077 LVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQ 1153 (1391)
T ss_pred HHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHH
Confidence 99999999998 77888899999999999999999999999999999999999999999999999999995 689999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcccchH
Q 046196 1217 NAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVS 1296 (1436)
Q Consensus 1217 ~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~m~g~~~~~~ 1296 (1436)
|.+|++|+++++.+..++..++|.+..||.++|||+++||||+.+|++||+++|+||+++++++|.+|+|+|+||++++.
T Consensus 1154 n~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~ 1233 (1391)
T KOG0065|consen 1154 NAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTAS 1233 (1391)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHH
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhcHHHHHHHHHHHH
Q 046196 1297 KFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVAS 1376 (1436)
Q Consensus 1297 ~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~ 1376 (1436)
+|+||+++++++.+|++++|||+.+++||.++|+++++++++++++||||++|++.||.||+||||+||++|.++|++..
T Consensus 1234 ~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~ 1313 (1391)
T KOG0065|consen 1234 KFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISS 1313 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcccccC----------CCCCHHHHHHhhcC----CcccchhHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046196 1377 QFGDVNDTFD----------SGQKVGDFVKDYFG----YDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436 (1436)
Q Consensus 1377 ~~~~~~~~~~----------~~~~~~~~~~~~~g----~~~~~~~~~~~~l~~~~~~f~~~~~~~l~~~~~~~r 1436 (1436)
+++|.+..|. +|.||++|++++|| |.++.......+..+|.+.+.+++.+++|+.|||||
T Consensus 1314 ~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1314 QLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 9999998884 34699999999999 999999998899999999999999999999999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-233 Score=2318.31 Aligned_cols=1418 Identities=61% Similarity=1.074 Sum_probs=1272.4
Q ss_pred CCcccccCcccccccc--C-C--CCCCCchhhhhHHHHhhCCchhhhhhcccccc-----CCC---cceeccCCCChhhh
Q 046196 17 SSSIWRNNTLDVFARS--S-R--EDTYDDDEALTWAAIEKLPTYLRVQRGMLTED-----EGQ---AREVDIKNLGFIER 83 (1436)
Q Consensus 17 ~~~~~~~~~~~~~~~~--~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~ 83 (1436)
+.+.|. .+++|++. + + .+.|||||+|+|||+||||||+|+|++++.+. .|+ .+|+|+++|+.+|+
T Consensus 17 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1470)
T PLN03140 17 SRSSRN--MEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDR 94 (1470)
T ss_pred hhhhhh--hhhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHH
Confidence 344463 36888552 2 2 13458999999999999999999999999652 122 23699999999999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhcCCCCCceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCC
Q 046196 84 RNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSR 163 (1436)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1436)
+.+++|++++.++|++++++++++|.+++|+++|++||+|+||++++++.++++.+||++|...+.++.+....+...++
T Consensus 95 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k 174 (1470)
T PLN03140 95 QKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAK 174 (1470)
T ss_pred HHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777655544444
Q ss_pred CCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCC
Q 046196 164 KKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 164 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~l 243 (1436)
+.+++||+|||+.++|||+++|+|||||||||||++|+|+++|+.+++|+|.+||+++++..+++.++||+|+|.|++++
T Consensus 175 ~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 175 KTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred CccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcC
Confidence 45678999999999999999999999999999999999999887778999999999988776678899999999999999
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+|||.|+++|++.+.++++..+..+++++.++.|+.+.++++++...++.+.+..++++|+.+||++|+||.||++++
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999999999988777766666777888888888888888999999888888888899999999999999999999999
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
++|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 99999999999999999999999999999999999999999999999987667788888899999999999999999999
Q ss_pred eEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcCC
Q 046196 404 QIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATP 483 (1436)
Q Consensus 404 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1436)
+++|+||++++.+||+++||+||+++++|||+++++++++++++|.....|+++.++++|++.|++++.++++.++++.+
T Consensus 415 ~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 494 (1470)
T PLN03140 415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVP 494 (1470)
T ss_pred eEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999988888877777888889999999999999988888887777
Q ss_pred CCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhhHHH
Q 046196 484 FDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGAL 563 (1436)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g~l 563 (1436)
.++++.++.....++|..++++|++.|++|++++++||+..++.++++.+++|+++|++|++++++.....++..+.|++
T Consensus 495 ~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~l 574 (1470)
T PLN03140 495 FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGAL 574 (1470)
T ss_pred hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH
Confidence 66665566666667899999999999999999999999999999999999999999999999987765556677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHHHHH
Q 046196 564 FFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYF 643 (1436)
Q Consensus 564 ff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l 643 (1436)
||++++.++++++++..++.++|||+|||+..||++|+|+++++++++|+.++++++|++|+|||+|+.+++++||.+++
T Consensus 575 ff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l 654 (1470)
T PLN03140 575 LFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLL 654 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCCcc
Q 046196 644 LLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSW 723 (1436)
Q Consensus 644 ~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~ 723 (1436)
+++++++++++++++++++++++.+|++++++..+++++|+||++++++||+||+|++|+||+.|+++++++|||.+.+|
T Consensus 655 ~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~ 734 (1470)
T PLN03140 655 LVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRW 734 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccC-CCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCCCC-
Q 046196 724 GHV-PPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEE- 801 (1436)
Q Consensus 724 ~~~-~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 801 (1436)
.+. +.+...+.|..+|+.+|+..++.|+|+++|++++|+++|++++++++++.++......++..+............
T Consensus 735 ~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1470)
T PLN03140 735 MNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIP 814 (1470)
T ss_pred cCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccc
Confidence 643 223345789999999999998999999999999999999999999999998765555443221111000000000
Q ss_pred ---cccc--c---ccc--cccccc----cccc-c-ccccccccCcccCCCCceeEEecccceeecchhhhccCCCCcccc
Q 046196 802 ---PVEL--S---SGV--QSSYGE----VRSF-N-EADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLE 865 (1436)
Q Consensus 802 ---~~~~--~---~~~--~~~~~~----~~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1436)
..+. . ... +..... .... . ......++++.+|+.|..++|+|++|.++.+.+.++.+...+++.
T Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~ 894 (1470)
T PLN03140 815 RSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQ 894 (1470)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCce
Confidence 0000 0 000 000000 0000 0 001122345667888899999999999998877666555556678
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESL 945 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l 945 (1436)
+|+|||++++||+++|||||||||||||||+|+|+.++++.+|+|.+||.+.+...+++.+|||+|+|.+++.+||+|+|
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 99999999999999999999999999999999999876678999999999876555667899999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHH
Q 046196 946 VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025 (1436)
Q Consensus 946 ~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~ 1025 (1436)
.|++.++.|...+.+++.++++++++.++|.+++|+.+|.+++++|||||||||+||++|+.+|+||||||||||||+.+
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 99998887766666677788999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHhhhCCCCCCCCCCCCcccc
Q 046196 1026 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATW 1105 (1436)
Q Consensus 1026 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~ 1105 (1436)
+..+++.|++++++|+|||||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|+|+||+++|||||
T Consensus 1055 a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~ 1134 (1470)
T PLN03140 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATW 1134 (1470)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhh
Confidence 99999999999988999999999999778999999999998899999999998889999999999888889999999999
Q ss_pred eeeccCchhhhhhhhcHHHHHhhcHhhHhHHHHHHhhCCCCCCCCCCcccccccCcHHHHHHHHHHHHHHHhhcChhHHH
Q 046196 1106 MLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTA 1185 (1436)
Q Consensus 1106 ~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~ 1185 (1436)
|||+++.+.+...+.||++.|++|++++++++.+++++.++++.++..++++|++|+|+|+++|+||+++++||||.|+.
T Consensus 1135 ~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~ 1214 (1470)
T PLN03140 1135 MLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNL 1214 (1470)
T ss_pred hhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHH
Confidence 99999876665566799999999999999888888887776666666667889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHH
Q 046196 1186 VRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFG 1265 (1436)
Q Consensus 1186 ~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a 1265 (1436)
+|+++++++|+++|++||+++++..+++++++++|++|++++|+++.++++++|.+..||+||+|||++|+|++.+|++|
T Consensus 1215 ~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la 1294 (1470)
T PLN03140 1215 VRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIA 1294 (1470)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 99999999999999999999988777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcc
Q 046196 1266 QVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSG 1345 (1436)
Q Consensus 1266 ~~l~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G 1345 (1436)
++++|+|+.++++++|++|+|||+||++++.+||||+++++++.++++++|+++++++||.++|+.+++++++++++|||
T Consensus 1295 ~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~G 1374 (1470)
T PLN03140 1295 QVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSG 1374 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCcccccCC-----CCCHHHHHHhhcCCcccchhHHHHHHHHHHHHH
Q 046196 1346 FIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDTFDS-----GQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLF 1420 (1436)
Q Consensus 1346 ~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~f 1420 (1436)
|++|+++||+||+|+||+||++|+++|+++|||+|.+..|++ ++++++|++++|||+++++|++++++++|+++|
T Consensus 1375 f~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f 1454 (1470)
T PLN03140 1375 FFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFF 1454 (1470)
T ss_pred eccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHH
Confidence 999999999999999999999999999999999998876542 357899999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCC
Q 046196 1421 GFTFAYSIKAFNFQHR 1436 (1436)
Q Consensus 1421 ~~~~~~~l~~~~~~~r 1436 (1436)
++++++++|++|||||
T Consensus 1455 ~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1455 AFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHHHHHHhhcccC
Confidence 9999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-182 Score=1834.50 Aligned_cols=1284 Identities=30% Similarity=0.522 Sum_probs=1052.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCC--ceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecc
Q 046196 96 EDNEKFLLKLKDRIERVGLDIP--TIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDV 173 (1436)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 173 (1436)
.|++++++.+.++.++.+...| +++|+|+||++++ ...+....||+.|...+.......... ..+++++++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4566666554444445554444 9999999999999 444566789999988776553332221 12334557799999
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-CCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCCHHHHHH
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD-LKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
|+.++|||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++.+.. .++.++||+|+|.|++.+||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 9999999999999999999999999999997421 124999999999875432 2346999999999999999999999
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
|+++++....+.+ ...+.+ ..+..++.+|+.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 9987654211100 000100 01123466899999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecC
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGP 410 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~ 410 (1436)
||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+|+++||++++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999875567888888888899999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcCCCCCC---
Q 046196 411 RENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKS--- 487 (1436)
Q Consensus 411 ~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 487 (1436)
++++.+||+++||+||++.+++||+.+++++.++ +++.... .....+.+++++.|++++.++++.++...+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYE-KKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hcccccc-ccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987642 2322111 1123578899999999887766655543221110
Q ss_pred ------------CCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccc
Q 046196 488 ------------KSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVED 555 (1436)
Q Consensus 488 ------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~ 555 (1436)
...+.....+.|..++++|++.|++|+++.++||+..++.++++.+++|+++|++|++.+.+.. .
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---D 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---h
Confidence 0001122334688899999999999999999999999999999999999999999999875432 3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccH
Q 046196 556 GGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNI 635 (1436)
Q Consensus 556 ~~~~~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 635 (1436)
.....|++||++++.++.++.++...+.++|+|+|||...+|++++|++++.+.++|+.++.+++|++|+|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 45678999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHH
Q 046196 636 ERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAV 715 (1436)
Q Consensus 636 ~~f~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~ 715 (1436)
++||.+++++++...+++++++++++++++..+|+.++++..+++++++||+++.++||+||+|++|+||+.|++++++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCccccC---CCC---------------------CCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 046196 716 NEFLGKSWGHV---PPN---------------------STEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTV 771 (1436)
Q Consensus 716 nef~~~~~~~~---~~~---------------------~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~ 771 (1436)
|||.+..+.|. +.+ .....|..+|+. ++.....|+|.++|++++|+++|.+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999998874 211 113468888884 33334568999999999999999999999
Q ss_pred HHHhcCCCCCccccchHHHHhh---hhccCCCCcccccccccccccccccccccccccccCcccC--CCCceeEEecccc
Q 046196 772 ALKYLDPFGKPQAILSEEALAK---KNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILP--FEPHSITFDDIRY 846 (1436)
Q Consensus 772 ~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~ 846 (1436)
++++.++.......+....... .......+....+......+...+...+.+ ........| .....++|+|++|
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~nl~~ 767 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESD-DVNDEKDMEKESGEDIFHWRNLTY 767 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccc-cccccccccccCCCceEEEEeeEE
Confidence 9999885543322211111000 000000000000000000000000000000 000000001 1123478999998
Q ss_pred eeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC-ceeEEEEECCccCCcccccce
Q 046196 847 ALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YVSGSITISGYPKNQETFARI 925 (1436)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~ 925 (1436)
.++.+ .+++.+|+|||++++|||++||||||||||||||++|+|+.+++ +.+|+|.+||++... .+++.
T Consensus 768 ~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~ 837 (1394)
T TIGR00956 768 EVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRS 837 (1394)
T ss_pred EecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcc
Confidence 87421 13457999999999999999999999999999999999998644 467999999998753 46778
Q ss_pred EEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 046196 926 SGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVEL 1005 (1436)
Q Consensus 926 ~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL 1005 (1436)
+|||+|+|.+++.+||+|+|.|++.++.|...+.+++.++++++++.++|.++.|+.+|.++ .+|||||||||+||+||
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVEL 916 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHHH
Confidence 99999999999999999999999998877666666777889999999999999999998654 48999999999999999
Q ss_pred hhCCC-cceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHH
Q 046196 1006 VANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLI 1084 (1436)
Q Consensus 1006 ~~~p~-illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~~~~~~~~ 1084 (1436)
+.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||++++|++||+++|+||.++++++++
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 99997 99999999999999999999999999888999999999999777889999999999889999999998889999
Q ss_pred HHhhhCCCCCCCCCCCCcccceeeccCchhhhhhhhcHHHHHhhcHhhHhHHHHHHhhCCCCCCCC---CCcccccccCc
Q 046196 1085 KYFEGIDGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKNSELYKGNKEMIKELSIPPPGSK---NLYFQTRYSQS 1161 (1436)
Q Consensus 1085 ~yf~~~~~~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s 1161 (1436)
+||+++ |.++||+++|||||+||+++...+.....+|.+.|++|+++++..+.++++..+..... +.....+|+.|
T Consensus 997 ~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1075 (1394)
T TIGR00956 997 NYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAAS 1075 (1394)
T ss_pred HHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCC
Confidence 999986 55679999999999999988654443446899999999988877666555443321111 11122468999
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 046196 1162 FFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVV 1241 (1436)
Q Consensus 1162 ~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~ 1241 (1436)
|++|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++.+ .+++|.|
T Consensus 1076 ~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~-~~~~~~f 1151 (1394)
T TIGR00956 1076 LWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI-QQYLPPF 1151 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-HHhhhhH
Confidence 9999999999999999999999999999999999999999999987 47889999999999988887764 4566888
Q ss_pred HHhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcccchHH-------HHHHHHHHHHHHHHHH
Q 046196 1242 AVERTVF-YRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSK-------FLWYLLFMYLTFLYFT 1313 (1436)
Q Consensus 1242 ~~er~v~-~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~-------f~~~~~~~~~~~~~~~ 1313 (1436)
..||.+| +||+++|+|++.+|++|++++|+|+.++++++|++|+|||+||++++.+ |++|+++++++.++++
T Consensus 1152 ~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 1231 (1394)
T TIGR00956 1152 VAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFS 1231 (1394)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHH
Confidence 8888885 8999999999999999999999999999999999999999999988876 9999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCcccccCC------
Q 046196 1314 LYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDTFDS------ 1387 (1436)
Q Consensus 1314 ~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~~~~------ 1387 (1436)
++|+++++++|+..+|+.+++++++++++||||++|+++||.||+|++|+||++|+++|++.|||+|.+..|.+
T Consensus 1232 s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f 1311 (1394)
T TIGR00956 1232 TLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTF 1311 (1394)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877742
Q ss_pred ----CCCHHHHH-------------------------------HhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 046196 1388 ----GQKVGDFV-------------------------------KDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAF 1431 (1436)
Q Consensus 1388 ----~~~~~~~~-------------------------------~~~~g~~~~~~~~~~~~l~~~~~~f~~~~~~~l~~~ 1431 (1436)
|.||++|+ ...+|++.++.|++++++++|++++ ++.++++.+.
T Consensus 1312 ~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1312 NPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred cCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheE
Confidence 33444332 2366899999999999999999988 6777777765
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-93 Score=901.88 Aligned_cols=581 Identities=25% Similarity=0.420 Sum_probs=485.8
Q ss_pred CCceeEEecccceeecch----------------hhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHc
Q 046196 835 EPHSITFDDIRYALDMPQ----------------EMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 835 ~~~~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
.+..+.|.|++|.+.... ..++.....+++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 356899999999886542 0111222344577999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 046196 899 GRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978 (1436)
Q Consensus 899 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~ 978 (1436)
|+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.+++.++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9976544689999999987533 345689999999999999999999999888766555556667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Q 046196 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAF 1058 (1436)
Q Consensus 979 ~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1058 (1436)
.|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred CeEEEEecCcEEEEEcCCCcchhHHHHHhhhCCCCCCCCCCCCcccceeeccCchhhh---------hhhhcHHHHHhhc
Q 046196 1059 DELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQEA---------ALGINFAKVYKNS 1129 (1436)
Q Consensus 1059 D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~~~~---------~~~~~~~~~~~~s 1129 (1436)
|++++|++ |+++|.|+. +++++||+++| . +||+++|||||++|+++...+. .....+.+.|+++
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 799999996 68999999985 3 5999999999999998753210 0011233445322
Q ss_pred HhhHhHHHHHHhh--CC-CCC-----CCCCC-cccccccCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 046196 1130 ELYKGNKEMIKEL--SI-PPP-----GSKNL-YFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGT 1200 (1436)
Q Consensus 1130 ~~~~~~~~~~~~~--~~-~~~-----~~~~~-~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1200 (1436)
. .+...+..+.. .. +.. ..+.. ...+.+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111110 00 000 00000 011235578999999999999988 99999999999999999999999
Q ss_pred HhccCCCCCCCHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 046196 1201 IFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVI 1280 (1436)
Q Consensus 1201 ~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~ 1280 (1436)
+||+++ ..+++++.|++||++++.++.+++.+++.|+.||+||+||+++|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999985 467899999999999998888888888999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhh
Q 046196 1281 YGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWY 1360 (1436)
Q Consensus 1281 ~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~ 1360 (1436)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++||..+|+.+++++++++++||||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhcHHHHHHHHHHHHhhCCccc-----ccCCC----CCHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 046196 1361 CWICPVSWTLYGLVASQFGDVND-----TFDSG----QKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAF 1431 (1436)
Q Consensus 1361 ~~~sp~~y~~~~l~~~~~~~~~~-----~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~f~~~~~~~l~~~ 1431 (1436)
+|+||++|+++|++.|||++... .|+.. .....++. ..++++...|.++++|++|+++|++++++++++.
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987542 45321 11112222 2344455789999999999999999999999988
Q ss_pred cc
Q 046196 1432 NF 1433 (1436)
Q Consensus 1432 ~~ 1433 (1436)
||
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 86
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-93 Score=904.51 Aligned_cols=564 Identities=30% Similarity=0.513 Sum_probs=499.5
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC-ceeEEEEECCccCCcccccceEEEeecCCCCCCCCcH
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+++...+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 567999999999999999999999999999999999987643 3589999999988766677889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~-~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsg 1020 (1436)
+||+.|++.++.|...+.+++++.++++++.+||.+++|+.+|.++ .++||||||||++||+||+.+|++++|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999888777777788889999999999999999999754 678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHhhhCCCCCCCCCCC
Q 046196 1021 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVPKIKEGY 1100 (1436)
Q Consensus 1021 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~~~~~~~ 1100 (1436)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+||. +++.+||++++ . +||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g-~-~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLG-H-PCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcC-C-CCCCCC
Confidence 9999999999999999888999999999998889999999999985 799999997 67999999985 3 699999
Q ss_pred CcccceeeccCchhhh-----hhhhcHHHHHhhcHhhHhHHHHHHhhCCCCC---CCCCCcccccccCcHHHHHHHHHHH
Q 046196 1101 NPATWMLEVTTPAQEA-----ALGINFAKVYKNSELYKGNKEMIKELSIPPP---GSKNLYFQTRYSQSFFTQCMACLWK 1172 (1436)
Q Consensus 1101 npad~~l~v~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~Q~~~l~~R 1172 (1436)
|||||++|+++...+. ....++.+.|++|+.+++..+.......+.+ ........+++..+|+.|+..|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 9999999998743321 1123566777777766554443332111111 1111112346788999999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHh
Q 046196 1173 QHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVERTVFYRER 1252 (1436)
Q Consensus 1173 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~ 1252 (1436)
+++++||||.++.+|+++++++|+++|++||++++ ++++++++.|++|++++++++.++..+.+.++.||.+|+||+
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999986 467899999999999999998888788899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 046196 1253 AAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAII 1332 (1436)
Q Consensus 1253 ~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 1332 (1436)
.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.+
T Consensus 427 ~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 506 (617)
T TIGR00955 427 RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506 (617)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCccc-ccCCC------CCHHHHHHhhcCCcccc
Q 046196 1333 ASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVND-TFDSG------QKVGDFVKDYFGYDHDM 1405 (1436)
Q Consensus 1333 ~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~-~~~~~------~~~~~~~~~~~g~~~~~ 1405 (1436)
+++++.++++|+||+++.++||+||+|++|+||++|++++++.|||++... +|..+ +..++++.+.||++.++
T Consensus 507 ~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~ 586 (617)
T TIGR00955 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD 586 (617)
T ss_pred HHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999998775 55421 11257777899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 046196 1406 LGVVAVVHVGLVVLFGFTFAYSIKAFNFQHR 1436 (1436)
Q Consensus 1406 ~~~~~~~l~~~~~~f~~~~~~~l~~~~~~~r 1436 (1436)
.|.++++|++|.++|+++++++|++-...+|
T Consensus 587 ~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 587 LYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999998666555
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-93 Score=892.42 Aligned_cols=578 Identities=31% Similarity=0.575 Sum_probs=501.9
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC-ceeEEEEECC
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YVSGSITISG 914 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g 914 (1436)
+..+.|+|+++..+.+.. ..+++|+|||+.++|||++||||||||||||||++|+|+..++ ..+|+|++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred cceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 457899999987754321 3478999999999999999999999999999999999998764 6899999999
Q ss_pred ccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 915 YPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 915 ~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
++.+.+.+++.+|||+|+|.++|++||+|+|.|+|.+|+|...+.++++++|+++++.+||.+++|+++|+++.+|+|||
T Consensus 95 ~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 95 RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGG 174 (613)
T ss_pred ccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccc
Confidence 88888889999999999999999999999999999999999888999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
|||||+||.+|+.||+||||||||||||+.++..++++|++++++|+|||||+|||+.+++++||++++|++ |+++|+|
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G 253 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSG 253 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 6999999
Q ss_pred CCCcchhHHHHHhhhCCCCCCCCCCCCcccceeeccCch-hhhhhhhcHHHHHhhcHhhH--h-HHHHHHhhCCCCCCCC
Q 046196 1075 PLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPA-QEAALGINFAKVYKNSELYK--G-NKEMIKELSIPPPGSK 1150 (1436)
Q Consensus 1075 ~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~-~~~~~~~~~~~~~~~s~~~~--~-~~~~~~~~~~~~~~~~ 1150 (1436)
|. +++.+||+++| . +||+++|||||++|+.+.. ..... .+..+.++....++ . ..+............+
T Consensus 254 ~~----~~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (613)
T KOG0061|consen 254 SP----RELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSK 326 (613)
T ss_pred CH----HHHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHHHHhhhccccc
Confidence 97 68999999985 4 4999999999999998742 11000 11111111111100 0 0000000111100111
Q ss_pred CCcccccccCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHHHHHH
Q 046196 1151 NLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLG 1230 (1436)
Q Consensus 1151 ~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~ 1230 (1436)
. .+.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||+++++ ..+++++.|++|+.+.++.
T Consensus 327 ~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~~~~~ 401 (613)
T KOG0061|consen 327 K--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFILSFMT 401 (613)
T ss_pred c--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHHHHHH
Confidence 1 1111278999999999999999999999999999999999999999999999764 5566799999999999998
Q ss_pred HHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcccchHHHHHHHHHHHHHHH
Q 046196 1231 VQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFL 1310 (1436)
Q Consensus 1231 ~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~ 1310 (1436)
+..+...++.|+.||.+|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++...|++|++++++..+
T Consensus 402 f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~ 481 (613)
T KOG0061|consen 402 FLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSL 481 (613)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCcccccC----
Q 046196 1311 YFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDTFD---- 1386 (1436)
Q Consensus 1311 ~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~~~---- 1386 (1436)
.++++|++++++.||...|..++++++..+++|+||+++.++||+||+|++|+|+++|+++|++.|||++....|.
T Consensus 482 ~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~ 561 (613)
T KOG0061|consen 482 VAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN 561 (613)
T ss_pred HHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997333332
Q ss_pred --CCCCHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 046196 1387 --SGQKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQH 1435 (1436)
Q Consensus 1387 --~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~f~~~~~~~l~~~~~~~ 1435 (1436)
+..++.+++ ..++++.++.|.++.++++|.++|++++++++++--..+
T Consensus 562 ~~~~~~~~~~l-~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 562 LCCESTGEDVL-KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred CcccccHHHHH-HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 122445555 578999999999999999999999999999998754443
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-90 Score=937.35 Aligned_cols=561 Identities=26% Similarity=0.441 Sum_probs=494.0
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC--CceeEEEEECCccCCc--ccccceEEEeecCCCCCC
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYVSGSITISGYPKNQ--ETFARISGYCEQTDIHSP 937 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~ 937 (1436)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+... ..+++.++|++|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 456799999999999999999999999999999999998632 2479999999987642 234566999999999999
Q ss_pred CCcHHHHHHHHHHhcCCC----CCCHHHHHH-HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 046196 938 HVTVYESLVYSAWLRLPP----EVDSDTRKM-FVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1012 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~----~~~~~~~~~-~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~il 1012 (1436)
.+||+|++.|++.++.|. ..+.+++.+ .++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998887653 223344333 357789999999999999998888999999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHhhhCC
Q 046196 1013 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGID 1091 (1436)
Q Consensus 1013 llDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~ 1091 (1436)
+|||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+||. +++++||+++|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG 306 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG 306 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC
Confidence 999999999999999999999999874 899999999998789999999999996 799999996 68999999985
Q ss_pred CCCCCCCCCCcccceeeccCchhhh----------hhhhcHHHHHhhcHhhHhHHHHHHhhCCCC---------------
Q 046196 1092 GVPKIKEGYNPATWMLEVTTPAQEA----------ALGINFAKVYKNSELYKGNKEMIKELSIPP--------------- 1146 (1436)
Q Consensus 1092 ~~~~~~~~~npad~~l~v~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1146 (1436)
. +||+++|||||++|++++..+. ....+|++.|++|+.+++..+.+++.....
T Consensus 307 -~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 307 -F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred -C-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 3 6999999999999998864311 123579999999998877665544321110
Q ss_pred CCCCCCcccccccCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHH
Q 046196 1147 PGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAI 1226 (1436)
Q Consensus 1147 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~ 1226 (1436)
..++.....+.|..|+|+|+++|++|+++.+||||.++.+|+++++++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011112234688899999999999999999999999999999999999999999999986 4578899999999999
Q ss_pred HHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcccchHHHHHHHHHHH
Q 046196 1227 LFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMY 1306 (1436)
Q Consensus 1227 ~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~ 1306 (1436)
++.++.++..+ +.+..||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887665 55668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCcccccC
Q 046196 1307 LTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDTFD 1386 (1436)
Q Consensus 1307 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~~~ 1386 (1436)
++.++++++++++++++||..+|+.+++++++++++|+||++|+++||+||+|++|+||++|+++|++.|||++....|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887773
Q ss_pred ----C---------------------C---CCHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046196 1387 ----S---------------------G---QKVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNF 1433 (1436)
Q Consensus 1387 ----~---------------------~---~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~f~~~~~~~l~~~~~ 1433 (1436)
. | .++.+|+...|||+++|+|+++++|++|+++|+++++++++++++
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 0 145689988899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-89 Score=920.15 Aligned_cols=563 Identities=25% Similarity=0.392 Sum_probs=484.8
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC-ceeEEEEECCccCCcccccceEEEeecCCCCCCCCcH
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
++.+|+|||+.++|||+++|+|||||||||||++|+|+.++. ..+|+|.+||++......++.++|++|+|.|++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 567999999999999999999999999999999999997642 3589999999987544446779999999999999999
Q ss_pred HHHHHHHHHhcCCCC-------CCHHHH------------------------HHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 942 YESLVYSAWLRLPPE-------VDSDTR------------------------KMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~-------~~~~~~------------------------~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
+|+|.|++.++.+.. ...+++ +..++++++.+||.+++|+.+|+..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999999988764321 111111 1235789999999999999999988999
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
|||||||||+||++|+.+|+++||||||+|||+.++..+++.|+++++ .|+|||+++|||+.+++++||+|++|++ |+
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ 415 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQ 415 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ce
Confidence 999999999999999999999999999999999999999999999976 4899999999998889999999999996 79
Q ss_pred EEEEcCCCcchhHHHHHhhhCCCCCCCCCCCCcccceeeccCchhh-h-----------hhhhcHHHHHhhcHhhHhHHH
Q 046196 1070 EIYVGPLGRHCSQLIKYFEGIDGVPKIKEGYNPATWMLEVTTPAQE-A-----------ALGINFAKVYKNSELYKGNKE 1137 (1436)
Q Consensus 1070 ~~y~G~~~~~~~~~~~yf~~~~~~~~~~~~~npad~~l~v~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~ 1137 (1436)
++|+||. +++++||+++| . +||+++|||||++|+++..+. . ....+|++.|++|+.+++..+
T Consensus 416 ivy~G~~----~~~~~yF~~lG-f-~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~ 489 (1470)
T PLN03140 416 IVYQGPR----DHILEFFESCG-F-KCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLEN 489 (1470)
T ss_pred EEEeCCH----HHHHHHHHHcC-C-CCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHH
Confidence 9999996 68999999985 4 699999999999999986432 1 123478999999988776554
Q ss_pred HHHhhCCCCCCCCCCcccccccCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHH
Q 046196 1138 MIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFN 1217 (1436)
Q Consensus 1138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~ 1217 (1436)
.++.........+.....+.|..|++.|++.|++|+++.+||||.++..|+++.+++|+++|++||+++.+..+..+.+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~ 569 (1470)
T PLN03140 490 ELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGAL 569 (1470)
T ss_pred HHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHH
Confidence 43221100000111112345889999999999999999999999999999999999999999999999876545556677
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcccchHH
Q 046196 1218 AMGSMYAAILFLGVQNATSVQPVVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSK 1297 (1436)
Q Consensus 1218 ~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~ 1297 (1436)
+.|++||++++..+.++.. ++.+..||+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++
T Consensus 570 ~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~ 648 (1470)
T PLN03140 570 YIGALLFSMIINMFNGFAE-LALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASR 648 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhH
Confidence 8899999998887766555 477889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHh
Q 046196 1298 FLWYLLFMYLTFLYFTLYGMMTVAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQ 1377 (1436)
Q Consensus 1298 f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~ 1377 (1436)
||.|+++++++.++++++++++++++|+..+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++|+++||
T Consensus 649 Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NE 728 (1470)
T PLN03140 649 FFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNE 728 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcccc---cC-CCCCHHHHHHhhcCCccc--chhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046196 1378 FGDVNDT---FD-SGQKVGDFVKDYFGYDHD--MLGVVAVVHVGLVVLFGFTFAYSIKAFNF 1433 (1436)
Q Consensus 1378 ~~~~~~~---~~-~~~~~~~~~~~~~g~~~~--~~~~~~~~l~~~~~~f~~~~~~~l~~~~~ 1433 (1436)
|.+.... |. ...+.++.+++.+||..+ +.|+++++|+||+++|.+++++++++++.
T Consensus 729 f~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 729 MFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred ccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9765432 11 123345555578999755 56999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=798.01 Aligned_cols=560 Identities=27% Similarity=0.492 Sum_probs=499.7
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC-ceeEEEEECCccCCcccccceEEEeecCCCCCCCCc
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 940 (1436)
.+..+|+|+|+.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.+...-++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999976532 236799999998765444788999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 046196 941 VYESLVYSAWLRLPPE----VDSDTRK-MFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1015 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~----~~~~~~~-~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlD 1015 (1436)
|+|+|.|+++++.|.. .++.++. +..|.+++.+||.+++|+++|+..+||+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998743 2222222 2578999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHhhhCCCCC
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEGIDGVP 1094 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~~~~~~ 1094 (1436)
|+|+|||+.++.++.+.||++++. +.|+++++|||+.+++++||+|++|.+ |+++|+||. .++++||+++|.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~Gf-- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMGF-- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcCc--
Confidence 999999999999999999999864 889999999999999999999999997 799999998 679999999853
Q ss_pred CCCCCCCcccceeeccCchhhh------------hhhhcHHHHHhhcHhhHhHHHHHHhhCCCCC---CCCCCccccccc
Q 046196 1095 KIKEGYNPATWMLEVTTPAQEA------------ALGINFAKVYKNSELYKGNKEMIKELSIPPP---GSKNLYFQTRYS 1159 (1436)
Q Consensus 1095 ~~~~~~npad~~l~v~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 1159 (1436)
.||+..++|||+.+|++...+. ....+|++.|.+|+.+++.... ++.|.. .++.....++|.
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~---l~~~~~~~k~~~~al~s~~y~ 435 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKE---LSKPYDKSKKHKAALVSSKYS 435 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHH---hcchhhhhhccchhhcCCcee
Confidence 6999999999999999832211 1125799999999998875443 333322 222233446789
Q ss_pred CcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046196 1160 QSFFTQCMACLWKQHLSYWRNPPYTAVRLFFTTFIALMFGTIFWDIGSKRANRQDLFNAMGSMYAAILFLGVQNATSVQP 1239 (1436)
Q Consensus 1160 ~s~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~ 1239 (1436)
.|+|.|++.|+.|.++.+.||..|...++++.+++|+++|++|++... .+..+.+.+.|++||++++..++.+..+ +
T Consensus 436 v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~ 512 (1391)
T KOG0065|consen 436 VPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-A 512 (1391)
T ss_pred ccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-H
Confidence 999999999999999999999999999999999999999999999983 4677889999999999999988887776 5
Q ss_pred hHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 046196 1240 VVAVERTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGFDWTVSKFLWYLLFMYLTFLYFTLYGMMT 1319 (1436)
Q Consensus 1240 ~~~~er~v~~rE~~~g~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~ 1319 (1436)
...+.|+||+|+|...+|++++|.++.+++++|+.++.+++|.+|+||++||.+++++||.++++++++..++.++.+++
T Consensus 513 ~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~i 592 (1391)
T KOG0065|consen 513 LTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFI 592 (1391)
T ss_pred HHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhcHHHHHHHHHHHHhhCCcccccC-CCC---------
Q 046196 1320 VAVTPNHNIAAIIASAFYVLWNLFSGFIIPRPRMPIWWRWYCWICPVSWTLYGLVASQFGDVNDTFD-SGQ--------- 1389 (1436)
Q Consensus 1320 ~~~~p~~~~A~~~~~~~~~~~~lf~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~~~-~~~--------- 1389 (1436)
++++|+...|+.++++.+....+++||+||.++||+||+|++|+||+.|++++++.|||++.+.+|. .||
T Consensus 593 a~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~ 672 (1391)
T KOG0065|consen 593 ASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIEN 672 (1391)
T ss_pred HHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988885 111
Q ss_pred ---------------CHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046196 1390 ---------------KVGDFVKDYFGYDHDMLGVVAVVHVGLVVLFGFTFAYSIKAFNFQ 1434 (1436)
Q Consensus 1390 ---------------~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~f~~~~~~~l~~~~~~ 1434 (1436)
.+.+|++..|.+++.|.|++++|++||.++|.+++.+++.|+|+-
T Consensus 673 ~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 673 KVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred ccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 347788888999999999999999999999999999999999864
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-77 Score=755.52 Aligned_cols=568 Identities=28% Similarity=0.435 Sum_probs=475.8
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 244 (1436)
.++++|+|+|++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35679999999999999999999999999999999999988754568999999998765445678999999999999999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc-c
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM-L 323 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~-~ 323 (1436)
|+|||.|+++++.... ..+ ++....++.+++.+||++++||.||+++ .
T Consensus 116 V~e~l~f~~~~~~~~~-------~~~------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 164 (617)
T TIGR00955 116 VREHLMFQAHLRMPRR-------VTK------------------------KEKRERVDEVLQALGLRKCANTRIGVPGRV 164 (617)
T ss_pred HHHHHHHHHhcCCCCC-------CCH------------------------HHHHHHHHHHHHHcCchhcCcCccCCCCCC
Confidence 9999999987653211 011 1122356789999999999999999864 6
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .+.|+|+++|||+.+++++||++++|++|
T Consensus 165 ~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G 243 (617)
T TIGR00955 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEG 243 (617)
T ss_pred CCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCC
Confidence 88999999999999999999999999999999999999999999999876 47788888888888999999999999999
Q ss_pred eEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcCC
Q 046196 404 QIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATP 483 (1436)
Q Consensus 404 ~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1436)
+++|+|+++++.+||+++|++||++.+++||+.++++.....+. . .....+++.+.|+++...++..+.....
T Consensus 244 ~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 316 (617)
T TIGR00955 244 RVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNLW 316 (617)
T ss_pred eEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhhh
Confidence 99999999999999999999999999999999998875432110 0 0112344555565554444333222111
Q ss_pred CCCC---CCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhh
Q 046196 484 FDKS---KSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYM 560 (1436)
Q Consensus 484 ~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~ 560 (1436)
.... ..........++..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+.. ......
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~~ 393 (617)
T TIGR00955 317 SGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNIN 393 (617)
T ss_pred hccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHHH
Confidence 1000 0000111223567889999999999999999999999999999999999999999998765432 234457
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHH
Q 046196 561 GALFFAVITIMFNGFSE-LSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFV 639 (1436)
Q Consensus 561 g~lff~v~~~~~~~~~~-~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~ 639 (1436)
|++|+.++...|.+... +.....++++|+|||...+|++++|++++.+.++|+.++.+++|++++|||+|+.+++.+|+
T Consensus 394 g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~ 473 (617)
T TIGR00955 394 GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFL 473 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHH
Confidence 88999888887776544 45556899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhc
Q 046196 640 KQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFL 719 (1436)
Q Consensus 640 ~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~ 719 (1436)
.++++++++..++.+++.++++++++..+|+.++++..+++++++||+++.++||+||+|++|+||+.|++++++.|||.
T Consensus 474 ~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~ 553 (617)
T TIGR00955 474 TFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWS 553 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc-ccCCCCC---CCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046196 720 GKSW-GHVPPNS---TEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYL 776 (1436)
Q Consensus 720 ~~~~-~~~~~~~---~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l 776 (1436)
+..+ .|...+. +...|..+++.+|+... ++|.+++++++++++|.++++++|++.
T Consensus 554 ~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 554 DVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776 4432221 23458899999998764 458899999999999999999999763
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-76 Score=746.67 Aligned_cols=608 Identities=22% Similarity=0.356 Sum_probs=465.5
Q ss_pred CCceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHH
Q 046196 116 IPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTT 195 (1436)
Q Consensus 116 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 195 (1436)
.++++++|.|+++.+.......+... ....+...-...++..++ .++++|+|||+++++||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccccccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 45789999999999753210111100 111110000111111222 3457999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHc
Q 046196 196 LLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAA 275 (1436)
Q Consensus 196 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1436)
||++|+|+++|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.... ..+
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~----- 175 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTK----- 175 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCH-----
Confidence 999999998774 2589999999987532 23568999999999999999999999865432110 000
Q ss_pred cCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCC
Q 046196 276 NIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTG 355 (1436)
Q Consensus 276 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsg 355 (1436)
++....++.+++.+||++++||.||++..++|||||||||+||++|+.+|+||+|||||+|
T Consensus 176 -------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 176 -------------------QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred -------------------HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 0112346778999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHH
Q 046196 356 LDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFL 435 (1436)
Q Consensus 356 LD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 435 (1436)
||+.++.++++.|+++++ .++|+|+++||+..++.++||+|++|++|+++|+|+++++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999876 4677777777777789999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcC---CCCCCC-----CCCc-ccccCCCCCCHHHH
Q 046196 436 QEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELAT---PFDKSK-----SHPA-ALTTKKYGASKKEL 506 (1436)
Q Consensus 436 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~-~~~~~~~~~s~~~~ 506 (1436)
.++++...+.+.....+.+ ...+++.+.|++... ++..+.... .....+ ..+. ......+..+++.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000111 112233344432111 111111000 000000 0000 00112245689999
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhhHHHHHHHHHHHH-HHHHHHHHHHhcc
Q 046196 507 LKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMF-NGFSELSMTIMKL 585 (1436)
Q Consensus 507 ~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g~lff~v~~~~~-~~~~~~~~~~~~~ 585 (1436)
+..+++|.++. +|+......|+++.+++|+++|++|++.+ ..+.+...|++||.+++.++ ..+..+.....++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887 67777778999999999999999999863 12334568999998777554 4567777778899
Q ss_pred chhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046196 586 PVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRN 665 (1436)
Q Consensus 586 pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~l~~~~~~~~~l~~~i~a~~~~ 665 (1436)
|+|+|||...+|++++|++++++.++|+.++.+++|++++|||+|+.+++.+|+.++++++++..++++++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCCc-----cccCCCCCCCchhHHHHh
Q 046196 666 IIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKS-----WGHVPPNSTEPLGVVILK 740 (1436)
Q Consensus 666 ~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~-----~~~~~~~~~~~~g~~~l~ 740 (1436)
...|++++++..+++++|+||+++ +||+||+|++|+||+.|++++++.|||.+.+ ..|.........+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 7999999999999999999999999997654 234321110011111222
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046196 741 SRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYL 776 (1436)
Q Consensus 741 ~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l 776 (1436)
...+. ....|.+++++++++++|.++.+++|++.
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222 23468899999999999999999998754
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=743.06 Aligned_cols=583 Identities=30% Similarity=0.504 Sum_probs=488.7
Q ss_pred CCceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHH
Q 046196 116 IPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTT 195 (1436)
Q Consensus 116 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 195 (1436)
...++++|+|++++.... .. ..+++|+||||+++|||++||+||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346789999999987431 01 3467999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHc
Q 046196 196 LLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAA 275 (1436)
Q Consensus 196 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1436)
||++|+|+..+...++|+|++||++.+....++.+|||.|+|.+++++||+|++.|++.++-... +.+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~----- 139 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSK----- 139 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCH-----
Confidence 99999999987667899999999877766677899999999999999999999999998864321 111
Q ss_pred cCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCC
Q 046196 276 NIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTG 355 (1436)
Q Consensus 276 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsg 355 (1436)
++...++|.+++.|||.+|+||.||+...||+||||||||+||..|+.+|+||+|||||||
T Consensus 140 -------------------~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 140 -------------------EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -------------------HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 2344678999999999999999999998899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHH
Q 046196 356 LDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFL 435 (1436)
Q Consensus 356 LD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 435 (1436)
||+.++.++++.|+++++. |+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||+..||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhhhhhccCCCCCccCCHHHHHHHHH-hchhhhhhhhhhcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHH
Q 046196 436 QEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQ-SFHIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFARE 514 (1436)
Q Consensus 436 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~ 514 (1436)
.++.+..+..+..... .......+.++ .....+... ......... .........++|.|+..+++|.
T Consensus 280 l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R~ 347 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLE-ALEKSLSTS-----KKVEIGTSPSWWTQFKILLKRS 347 (613)
T ss_pred HHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHH-HHhhhcccc-----cccccccCCcHHHHHHHHHHHH
Confidence 9987743110000000 00000001111 000000000 000000000 0001111678999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhhHHHHHHHHHHHHHHHH-HHHHHHhccchhHHhhc
Q 046196 515 YLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFS-ELSMTIMKLPVFYKQRD 593 (1436)
Q Consensus 515 ~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g~lff~v~~~~~~~~~-~~~~~~~~~pvf~k~r~ 593 (1436)
+....|++.+...|.+|.+.+++++|++|++.+.+.... ....|++|+.+.+..+.... .+.....++++|.||+.
T Consensus 348 ~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 348 LKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred hHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999985543322 25678888888877666655 57777899999999999
Q ss_pred ccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 046196 594 FLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFG 673 (1436)
Q Consensus 594 ~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~ 673 (1436)
..+|+.++|++++.+.++|+.++.+++|++++|||+|+.++..+|+.+.++.++...+++++..++++..++...|.+++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCCccccCCC--CCCCchhHHHHhhcCCCCCCchh
Q 046196 674 SFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPP--NSTEPLGVVILKSRGLFPNAYWY 751 (1436)
Q Consensus 674 ~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~l~~~g~~~~~~~~ 751 (1436)
++..+++++++||+++.+.+|+||.|+.|+|+..|++++++.|||.+....|... ......|..+++..++...+ .
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 582 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS--F 582 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc--c
Confidence 9999999999999999999999999999999999999999999999744444433 34566788999998887655 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 046196 752 WIGVGALLGYVLLFNFLFTVALKYL 776 (1436)
Q Consensus 752 w~~~g~l~~~~~~f~~~~~~~l~~l 776 (1436)
|.++.+++++.++|.+++++++++.
T Consensus 583 ~~~l~~l~~~~~~~~il~y~~L~~~ 607 (613)
T KOG0061|consen 583 WLDLLVLLAFIVFFRVLGYLALRFR 607 (613)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999998764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-73 Score=719.02 Aligned_cols=818 Identities=20% Similarity=0.260 Sum_probs=436.9
Q ss_pred hhHHHHHHHHHhcccchHHHHHHHHHHHHhcCCCCCceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccC
Q 046196 82 ERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLP 161 (1436)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1436)
..+.-..+++++++..+..-... ....-......+++|+|+.+++.
T Consensus 316 ~a~~aa~~I~~~i~~~~~i~~~~----~~~~~~~~~~g~ief~nV~FsYP------------------------------ 361 (1228)
T KOG0055|consen 316 KARAAAYRIFETIDRKPSIDPYS----KGGRVLSSIKGEIEFRNVCFSYP------------------------------ 361 (1228)
T ss_pred ccccchHHHHHHhcCCCCCCccc----ccCCcccccccceEEEEEEecCC------------------------------
Confidence 34455667777777655521100 01111223467899999988862
Q ss_pred CCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCC
Q 046196 162 SRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDL 238 (1436)
Q Consensus 162 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~ 238 (1436)
+++ +..||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|.++|+++.++..+ ..+|.|+|+|.
T Consensus 362 sRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePv 437 (1228)
T KOG0055|consen 362 SRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV 437 (1228)
T ss_pred CCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechh
Confidence 232 456999999999999999999999999999999999999998 99999999999887653 67999999997
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 318 (1436)
++..||+|||.|+ +||.+.+++.+|+++++.... +..|++..||.|
T Consensus 438 -lF~~tI~eNI~~G-------------------------~~dat~~~i~~a~k~ana~~f--------i~~lp~g~~T~v 483 (1228)
T KOG0055|consen 438 -LFATTIRENIRYG-------------------------KPDATREEIEEAAKAANAHDF--------ILKLPDGYDTLV 483 (1228)
T ss_pred -hhcccHHHHHhcC-------------------------CCcccHHHHHHHHHHccHHHH--------HHhhHHhhcccc
Confidence 5567999999997 456667777788777666544 455899999999
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
|+++.. |||||||||+|||||+.+|+|||||||||+||+.++..+.+.|.+.. .++|+|+ +.|.. .+.+.+|+|+
T Consensus 484 ge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRL-StIrnaD~I~ 558 (1228)
T KOG0055|consen 484 GERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRL-STIRNADKIA 558 (1228)
T ss_pred cCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeeh-hhhhccCEEE
Confidence 998875 99999999999999999999999999999999999999999999864 3677777 44544 4556699999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHH--HHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhch---hh
Q 046196 399 LLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFL--QEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFH---IG 473 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 473 (1436)
+|++|+|++.|+++|+++.- | --++.+ |+..+.++. ..+..+ ...+.....+.+. ..
T Consensus 559 v~~~G~IvE~G~h~ELi~~~---G-------~Y~~lv~~Q~~~~~~~~-~~~~~~-------~~~~~~~s~~~s~~~~~~ 620 (1228)
T KOG0055|consen 559 VMEEGKIVEQGTHDELIALG---G-------IYSSLVRLQELEKAAED-EEEEES-------LKEERSRSLKSSSSSPSL 620 (1228)
T ss_pred EEECCEEEEecCHHHHHhcc---c-------hHHHHHHHHhhhhhhhc-cccccc-------hhhhhhhccccccccccc
Confidence 99999999999999998620 1 001111 111111110 000000 0000000000000 00
Q ss_pred hhh--hhhh--cCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-------HHHHHHHh
Q 046196 474 QKL--GDEL--ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFF-------SASVAMTL 542 (1436)
Q Consensus 474 ~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~-------~ali~~t~ 542 (1436)
.+. .... ..+.++ ..... ........+.++.+ ...+..+...+.-.+..++ .+.+.+.+
T Consensus 621 ~~~~~~~~~~~~~~~~e-~~~~~-~~~~~~~~s~~~i~--------k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~ 690 (1228)
T KOG0055|consen 621 SRGSNRSNLLSVKPEGE-DPEEP-VSEEDEKVSFWRIF--------KLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQV 690 (1228)
T ss_pred cCCcccccccccccccc-ccccc-cccccccccHHHHH--------HhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 000 0000 000000 00000 00011223333333 3333333333333332222 22222222
Q ss_pred ---hhccccCcccccccchhhHHHHHHHHH----------HHHHHHHHHHHHHhccchhHHh--hcccccchhh--hHHH
Q 046196 543 ---FLRTEMHRSTVEDGGIYMGALFFAVIT----------IMFNGFSELSMTIMKLPVFYKQ--RDFLFFPAWA--YSLP 605 (1436)
Q Consensus 543 ---f~~~~~~~~~~~~~~~~~g~lff~v~~----------~~~~~~~~~~~~~~~~pvf~k~--r~~~~y~~~a--y~l~ 605 (1436)
|...+. +..........++|.++.. .+|.-..|....-.+...|.+- .+..||.--- -.+.
T Consensus 691 ~~~f~~~~~--~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~ 768 (1228)
T KOG0055|consen 691 LEAFYPPDD--DELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALS 768 (1228)
T ss_pred HHHHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHH
Confidence 221111 1111111112222222211 1111122222111111111110 0111221110 0111
Q ss_pred HHH-HHhh---------HHHHH----HHHHhhhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH-----
Q 046196 606 TWI-LKIP---------ITFIE----VGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNI----- 666 (1436)
Q Consensus 606 ~~l-~~iP---------~~~~~----~~i~~~i~Y~~~g~~~~~~~f~~~~l~l~~~~~~~~~l~~~i~a~~~~~----- 666 (1436)
.-+ .+.| ++.+. .++..+++-|..|..-.+--...+- ++........+++.......
T Consensus 769 ~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~P----ll~~~~~~~~~~~~~~~~~~~~~~~ 844 (1228)
T KOG0055|consen 769 SRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFP----LLILSGYLQKKFLKGFSKDDKKAYE 844 (1228)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 111 1111 11110 1111111111111100000000000 00000000111111111100
Q ss_pred ----HHHHHHHHHHHHHHHHHhceeec---c--CchhhHHHHHHhHcHHHHHHHHHHHhhhcCCccccCCCCCCCchhHH
Q 046196 667 ----IVANTFGSFANLTVLVLGGFILS---R--DDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPPNSTEPLGVV 737 (1436)
Q Consensus 667 ----~~a~~~~~~~~l~~~l~~Gf~i~---~--~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~ 737 (1436)
+....+..+-.+-.+..-..++. . +....-...-.+++-+.|++.....---.+. ....|..
T Consensus 845 ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~---------~f~~G~~ 915 (1228)
T KOG0055|consen 845 EASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYAL---------SFWYGAR 915 (1228)
T ss_pred HHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhHH
Confidence 00011111110000000000000 0 0000001111122222222211110000000 0000100
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCccccchHHHHhhhhccCCCCccccccccccccccc
Q 046196 738 ILKSRGLFPNAYWYWIGVGALLGYVLLFNF-LFTVALKYLDPFGKPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEV 816 (1436)
Q Consensus 738 ~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1436)
|-..|...... -+-++. ++.|.. ...-+..|...+.+ +..+....-. ... +. +
T Consensus 916 -Li~~g~~~~~~----~~~vf~--~l~~ta~~~~~~~s~~Pd~~k--a~~Aa~~iF~---i~d-r~-------~------ 969 (1228)
T KOG0055|consen 916 -LISNGEMTFED----VFRVFM--ALSFTAMALGQASSYAPDISK--AKIAAGSIFE---ILD-RK-------P------ 969 (1228)
T ss_pred -HHhcCCcCHHH----HHHHHH--HHHHHHHHHHHHHhhCcHHHH--HHHHHHHHHH---Hhc-CC-------C------
Confidence 00011100000 000000 011111 01111112111100 0000000000 000 00 0
Q ss_pred ccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHh
Q 046196 817 RSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896 (1436)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~ 896 (1436)
..+.....+...|.-...++|+||++.|+..+ ..++|+|+|+++++|+.+||+|||||||||.+.+
T Consensus 970 ----~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~L 1035 (1228)
T KOG0055|consen 970 ----TIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISL 1035 (1228)
T ss_pred ----CCCCCCCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHH
Confidence 00000011122233446799999999987543 4579999999999999999999999999999999
Q ss_pred HcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-
Q 046196 897 LAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMEL- 972 (1436)
Q Consensus 897 L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~- 972 (1436)
|-+.+. +.+|.|.|||.+++. ..+|+.+|.|.|+|.+|. -|++||+.|+. . +.+.++ +.+..+.
T Consensus 1036 LeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~e----Ii~Aak~A 1103 (1228)
T KOG0055|consen 1036 LERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEE----IIEAAKLA 1103 (1228)
T ss_pred HHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHH----HHHHHHHh
Confidence 998776 679999999998754 456788999999999975 69999999971 1 133222 2222222
Q ss_pred ------cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 046196 973 ------VELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1046 (1436)
Q Consensus 973 ------l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~ 1046 (1436)
.+|.+-.|+.+|..| .+||||||||++||||+++||+||+|||.||.||+++.+.|++.|.+.. .|+|.|++
T Consensus 1104 NaH~FI~sLP~GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvI 1181 (1228)
T KOG0055|consen 1104 NAHNFISSLPQGYDTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVI 1181 (1228)
T ss_pred hhHHHHhcCcCcccCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEE
Confidence 245566788888654 5899999999999999999999999999999999999999999999864 58999999
Q ss_pred ecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1047 IHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1047 ~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+|+++ ....+|.|.|+++ |+++..|..
T Consensus 1182 AHRLS--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1182 AHRLS--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred ecchh--hhhcCCEEEEEEC-CEEEecccH
Confidence 99976 6788999999996 799999974
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-73 Score=732.16 Aligned_cols=755 Identities=22% Similarity=0.269 Sum_probs=424.1
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
+.|+|||++|++|+++||+||.||||||||.+|.|+++.. +|+|.++| .++||+|++| +.+.||||
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pW-I~ngTvre 600 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPW-IQNGTVRE 600 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccH-hhCCcHHH
Confidence 3799999999999999999999999999999999999876 99999999 5999999999 55779999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
||.||..++. +||+.+.+.|..++|.++.|++| .|.||++++ +||
T Consensus 601 NILFG~~~d~--~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGErGi-nLS 645 (1381)
T KOG0054|consen 601 NILFGSPYDE--ERYDKVIKACALKKDLEILPFGD--------------------------------LTEIGERGI-NLS 645 (1381)
T ss_pred hhhcCccccH--HHHHHHHHHccCHhHHhhcCCCC--------------------------------cceecCCcc-CCc
Confidence 9999987753 68999999998888877666555 699999988 599
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
||||||+++|||+++++||++||+|.|++|+++..+|++.+... .++++|+|.++| ..+..+.+|.|++|++|+|+.
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~--~L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG--LLRGKTVILVTH-QLQFLPHADQIIVLKDGKIVE 722 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh--hhcCCEEEEEeC-chhhhhhCCEEEEecCCeEec
Confidence 99999999999999999999999999999999999999766532 345566666777 668899999999999999999
Q ss_pred ecChhHHHH---HHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcCCC
Q 046196 408 QGPRENVLE---FFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPF 484 (1436)
Q Consensus 408 ~G~~~~~~~---~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1436)
+|+++|+.+ .|+++ ...+ .. +++.. .....+.......+. +. +.........+. ...
T Consensus 723 ~Gty~el~~~~~~~~~l-~~~~------------~~--~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~ 782 (1381)
T KOG0054|consen 723 SGTYEELLKSGGDFAEL-AHEE------------ES--EQEEE-ASEKDLESGESSRES-ES-RSLESLSSEEEK--SKD 782 (1381)
T ss_pred ccCHHHHHhcchhHHHH-hhcc------------ch--hhccc-cccccccccccccch-hh-hhhhhhcccccc--ccc
Confidence 999999984 23222 0000 00 00000 000000000000000 00 000000000000 000
Q ss_pred CCCC-CCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHH-HHHHHHHhhhccccCcc--cc---ccc
Q 046196 485 DKSK-SHPAALTTKKYGASKKELLKACFAREYLLMKRNSF-VYFFKMFQIFF-SASVAMTLFLRTEMHRS--TV---EDG 556 (1436)
Q Consensus 485 ~~~~-~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~-~~~~~~~~~~~-~ali~~t~f~~~~~~~~--~~---~~~ 556 (1436)
.+.. .+......+..+.-.|..++.+++- ..... ..++-+.+... ...+....|+....+.. .. .+.
T Consensus 783 ~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a-----~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~ 857 (1381)
T KOG0054|consen 783 EKEEEDKLVQEEERETGKVSWSVYKKYIKA-----AGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVST 857 (1381)
T ss_pred ccchhhHHHHHHHHhcCEeeHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 0000 0000000112222333333332221 11111 11111112222 12233334433222111 11 112
Q ss_pred c----hhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhcccc
Q 046196 557 G----IYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFE 632 (1436)
Q Consensus 557 ~----~~~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~ 632 (1436)
. .|..+.+..++..++.++.-....+.....++.+ +-.-+.+.|++|++...-.-
T Consensus 858 ~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~------------ml~~Ilrapm~FFdtTP~GR--------- 916 (1381)
T KOG0054|consen 858 SFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDK------------LLNSILRAPMSFFDTTPTGR--------- 916 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHhCcchhcCCCCccc---------
Confidence 2 2333333333333333333333333222222222 33456677777765432221
Q ss_pred ccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHH
Q 046196 633 SNIERFVKQYFL-----LLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMM 707 (1436)
Q Consensus 633 ~~~~~f~~~~l~-----l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ 707 (1436)
-.+||.+..-. .+.+......+..+++.+.--..+...+..++..+. ++||.--.+
T Consensus 917 -ILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~------------------v~~~~~~~~ 977 (1381)
T KOG0054|consen 917 -ILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLG------------------VIYYFVQRY 977 (1381)
T ss_pred -hhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH------------------HHHHHHHHH
Confidence 13444433221 122222222222222222111111111111111111 112222222
Q ss_pred HHHHHHHHhhhcCCccccCCCCCCC-chhHHHHhhcCC----------------------CCCCchhHHHHHHHHHHHHH
Q 046196 708 YGQNALAVNEFLGKSWGHVPPNSTE-PLGVVILKSRGL----------------------FPNAYWYWIGVGALLGYVLL 764 (1436)
Q Consensus 708 y~~~al~~nef~~~~~~~~~~~~~~-~~g~~~l~~~g~----------------------~~~~~~~w~~~g~l~~~~~~ 764 (1436)
|--.+..+.+..+..-+....+..+ ..|...+++++- .....|+.+.+-.+.+.+++
T Consensus 978 Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~ 1057 (1381)
T KOG0054|consen 978 YLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVL 1057 (1381)
T ss_pred HHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333322222211111000 011111111111 01123544444444433333
Q ss_pred HHHHHHHHHHhcCC-CCCccccchHH--------------HHhhhhccCCCCccccccccccccccccccccccc-cccc
Q 046196 765 FNFLFTVALKYLDP-FGKPQAILSEE--------------ALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQ-NRKR 828 (1436)
Q Consensus 765 f~~~~~~~l~~l~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 828 (1436)
+..++.+...-... .+.....++.. ...+......++..+ +........... ..+.
T Consensus 1058 ~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~e--------Y~~~~~E~p~~~~~~~p 1129 (1381)
T KOG0054|consen 1058 IAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLE--------YTDIPSEAPLEIEESRP 1129 (1381)
T ss_pred HHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHH--------HhcCCCCCCCCCcCCCC
Confidence 33332222211100 00000001100 000001111111101 111000000000 0112
Q ss_pred CcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE
Q 046196 829 GMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG 908 (1436)
Q Consensus 829 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G 908 (1436)
+..+| ....|+|+|++.++. ++-..+|||||++|+|||++||+|++|||||||+++|.+... +.+|
T Consensus 1130 p~~WP-~~G~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G 1195 (1381)
T KOG0054|consen 1130 PPSWP-SKGEIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEG 1195 (1381)
T ss_pred CCCCC-CCCeEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCC
Confidence 22344 345799999755442 122359999999999999999999999999999999999876 5789
Q ss_pred EEEECCccCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc-
Q 046196 909 SITISGYPKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG- 984 (1436)
Q Consensus 909 ~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g- 984 (1436)
+|.|||.++.+ .++|++++.+||++.+|. -|||.||. |.+...++ .+.++++..+|.+......+
T Consensus 1196 ~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLD-------Pf~e~sD~---~IW~ALe~~~Lk~~v~~~p~~ 1264 (1381)
T KOG0054|consen 1196 EILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLD-------PFDEYSDD---EIWEALERCQLKDVVSSLPGG 1264 (1381)
T ss_pred eEEEcCeecccccHHHHHhcCeeeCCCCceec-CccccccC-------cccccCHH---HHHHHHHHhChHHHHhhCCcC
Confidence 99999999765 457888999999999986 59999995 33322221 24555555555433322211
Q ss_pred -----CCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhC
Q 046196 985 -----LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1059 (1436)
Q Consensus 985 -----~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1059 (1436)
.+++.++|.||||.+|+||||+++++||+|||+|+++|+++...|+++||+-.+ +||||+++|+.+ ....+|
T Consensus 1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~--TVmd~D 1341 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN--TVMDSD 1341 (1381)
T ss_pred CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc--hhhhcC
Confidence 135678999999999999999999999999999999999999999999999654 799999999976 455689
Q ss_pred eEEEEecCcEEEEEcCC
Q 046196 1060 ELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1060 ~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+||++ |+++.+|.+
T Consensus 1342 rVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1342 RVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred eEEEeeC-CeEeecCCh
Confidence 9999997 789888876
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-70 Score=733.27 Aligned_cols=224 Identities=26% Similarity=0.396 Sum_probs=192.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. .++.+|+|||+.|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 5889998876631 12469999999999999999999999999999999999987 5699999999887
Q ss_pred Cc--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046196 918 NQ--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq 995 (1436)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2235679999999999999999999998776653 233444566889999999998888764 4799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++..+|||+++|.+ |+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 67789999999996 79999998
Q ss_pred CCcchhHHHHHhh
Q 046196 1076 LGRHCSQLIKYFE 1088 (1436)
Q Consensus 1076 ~~~~~~~~~~yf~ 1088 (1436)
. +++...|.
T Consensus 2154 ~----q~Lk~~~g 2162 (2272)
T TIGR01257 2154 I----QHLKSKFG 2162 (2272)
T ss_pred H----HHHHHHhC
Confidence 6 45655553
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-67 Score=716.33 Aligned_cols=211 Identities=23% Similarity=0.319 Sum_probs=175.1
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++|+|++++++. +.+.+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 46999999988741 12359999999999999999999999999999999999987 578999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
+.. ..+++.+++|||++.++.. |++|||.+.. ..++ +.+.++++..++.+. .|+.+|.
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge- 1370 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSE- 1370 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccC-
Confidence 754 4567889999999998865 9999996431 1222 225666666665432 3445553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
++.+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1371 ~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 346899999999999999999999999999999999999999999999875 4899999999975 5667999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|++
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 799999975
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-66 Score=709.75 Aligned_cols=211 Identities=22% Similarity=0.314 Sum_probs=175.3
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++|+|++++++. +.+.+|+|+|++|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 46999999988731 22459999999999999999999999999999999999987 579999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
+.+ ..+++.++||||++.+++. |++|||.+.. ..+++ .+.++++..++.+. .|+.+|.
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e- 1367 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSE- 1367 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecC-
Confidence 753 4567889999999998875 9999996421 22222 25666776666543 2444553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
++.+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 346899999999999999999999999999999999999999999999875 4899999999975 5667999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 799999975
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-66 Score=611.96 Aligned_cols=474 Identities=27% Similarity=0.332 Sum_probs=361.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-CCcceEEEECCccCCCccc-------cceEEEecCCC-
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD-LKFSGRVTYNGHGMEEFVP-------QRTSAYISQND- 237 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~- 237 (1436)
.++++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++|++|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999876 4568999999987754433 25799999995
Q ss_pred -CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccc
Q 046196 238 -LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADT 316 (1436)
Q Consensus 238 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 316 (1436)
.+-|-+||.+.|.=..+..+... ..+...++.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 44566888888865443322110 12233456678999999987654
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
+++++.|||||||||.||+||+.+|++|++||||++||+.++.+|++.|+++.+. .++.++.++|+..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 6789999999999999999999999999999999999999999999999999864 578888899999999999999
Q ss_pred EEEecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhh
Q 046196 397 LILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKL 476 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1436)
|+||++|++++.|+.++++.. |. .||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p~-------------------------hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------PQ-------------------------HPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------cC-------------------------CcccH-----------------HH
Confidence 999999999999999998641 11 11100 00
Q ss_pred hhhhcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCccccccc
Q 046196 477 GDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDG 556 (1436)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~ 556 (1436)
..
T Consensus 255 l~------------------------------------------------------------------------------ 256 (539)
T COG1123 255 LA------------------------------------------------------------------------------ 256 (539)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHH
Q 046196 557 GIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIE 636 (1436)
Q Consensus 557 ~~~~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 636 (1436)
..|.....+
T Consensus 257 ---------------------------a~p~~~~~~-------------------------------------------- 265 (539)
T COG1123 257 ---------------------------AVPRLGDEK-------------------------------------------- 265 (539)
T ss_pred ---------------------------hCCCccccc--------------------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHh
Q 046196 637 RFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVN 716 (1436)
Q Consensus 637 ~f~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~n 716 (1436)
T Consensus 266 -------------------------------------------------------------------------------- 265 (539)
T COG1123 266 -------------------------------------------------------------------------------- 265 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhc
Q 046196 717 EFLGKSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNA 796 (1436)
Q Consensus 717 ef~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 796 (1436)
.
T Consensus 266 --------~----------------------------------------------------------------------- 266 (539)
T COG1123 266 --------I----------------------------------------------------------------------- 266 (539)
T ss_pred --------c-----------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCCcccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeC
Q 046196 797 CKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRP 876 (1436)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 876 (1436)
. ..+.. . . .+ ...-++++|++..+..+.... ....+...+++||||++++
T Consensus 267 --~--------~~~~~------~---~--------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~ 316 (539)
T COG1123 267 --I--------RLPRR------G---P--------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLRE 316 (539)
T ss_pred --c--------ccccc------c---c--------cc-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecC
Confidence 0 00000 0 0 00 011345555544443321110 0001235689999999999
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC--Cc---ccccceEEEeecCC--CCCCCCcHHHHHHHHH
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK--NQ---ETFARISGYCEQTD--IHSPHVTVYESLVYSA 949 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~--~~---~~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~ 949 (1436)
||++||+|+||||||||.++|+|+.+ |.+|+|.++|.+. +. ...++.+-+++|++ .+.|.+||++.+.-..
T Consensus 317 GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 99999999999999999999999987 4799999999772 11 22345566777765 5789999999998765
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHH
Q 046196 950 WLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028 (1436)
Q Consensus 950 ~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~ 1028 (1436)
....+. ...++++++.++++.++|.+ ..+.. +.+||||||||++|||||+.+|++|++|||||.||+..+..
T Consensus 395 ~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~ 467 (539)
T COG1123 395 RIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQ 467 (539)
T ss_pred hhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHH
Confidence 443322 24566778999999999985 34443 56899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1029 VMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1029 i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+.++|+++.++ |.|.|++|||.+ -+...||||++|.+ |+++..||.
T Consensus 468 VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 468 VLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred HHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 99999999766 999999999976 47779999999996 799999974
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-65 Score=697.42 Aligned_cols=211 Identities=19% Similarity=0.245 Sum_probs=175.6
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++|+|++++++. +...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 46999999988742 11359999999999999999999999999999999999887 568999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
+.. ..+++.++||||++.+++. |++|||.... ..+++ .+.++++..++.+. .|+.+|.
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e- 1417 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE- 1417 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-
Confidence 754 4567889999999999875 9999996211 22222 25667777666533 3455554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
++.+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 346799999999999999999999999999999999999999999999865 4799999999965 5677999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 799999975
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-65 Score=688.80 Aligned_cols=217 Identities=20% Similarity=0.316 Sum_probs=177.4
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC------------
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 904 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~------------ 904 (1436)
..++|+||+|+++.. .+.++|+|+||+|+||+++||+||||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 469999999988521 1235999999999999999999999999999999999988741
Q ss_pred ----------------------------------------ceeEEEEECCccCC---cccccceEEEeecCCCCCCCCcH
Q 046196 905 ----------------------------------------YVSGSITISGYPKN---QETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 905 ----------------------------------------~~~G~i~i~g~~~~---~~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+.+|+|++||.++. ...+++.+|||+|++.+| +.|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 15899999999874 345778899999999887 5799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-------PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1014 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-------~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illl 1014 (1436)
+|||.|+. + +.+.+ .++++++..++. +-.|+.+|. ++..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at~e----eI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DATRE----DVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998752 2 22322 245566655543 334777774 3567999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEecC---cE-EEEEcCC
Q 046196 1015 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRG---GE-EIYVGPL 1076 (1436)
Q Consensus 1015 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G---g~-~~y~G~~ 1076 (1436)
|||||+||+.+.+.|++.|+++. .+++|+|+++|+++ ....+|+|++|++| |+ ++..|+.
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 35899999999974 57789999999973 56 4578874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-64 Score=629.34 Aligned_cols=457 Identities=21% Similarity=0.291 Sum_probs=348.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCcceEEEECCccCCCccc----cceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK--DLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~ 240 (1436)
+++|+|||+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++||+|++.++
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALV 94 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccC
Confidence 3599999999999999999999999999999999999986 5 8999999998764332 24699999998889
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.|+......+. ... .+....++.+++.+||++..+..+
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 141 (506)
T PRK13549 95 KELSVLENIFLGNEITPGGI-------MDY------------------------DAMYLRAQKLLAQLKLDINPATPV-- 141 (506)
T ss_pred CCCcHHHHhhhcccccccCC-------cCH------------------------HHHHHHHHHHHHHcCCCCCcccch--
Confidence 99999999998743210000 000 001123566789999987777655
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+++|+.++|+..++.++||+|++|
T Consensus 142 ---~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tvi~~tH~~~~~~~~~d~v~~l 216 (506)
T PRK13549 142 ---GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA--HGIACIYISHKLNEVKAISDTICVI 216 (506)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhcCEEEEE
Confidence 45999999999999999999999999999999999999999999999854 3556777899999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhh
Q 046196 401 SDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDEL 480 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1436)
++|++++.|+.+++.. .+..+
T Consensus 217 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~--------------- 237 (506)
T PRK13549 217 RDGRHIGTRPAAGMTE--------------------------------------------DDIIT--------------- 237 (506)
T ss_pred ECCEEeeecccccCCH--------------------------------------------HHHHH---------------
Confidence 9999998886543210 00000
Q ss_pred cCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhh
Q 046196 481 ATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYM 560 (1436)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~ 560 (1436)
.+ .
T Consensus 238 ---------------------------------~~----------------------------~---------------- 240 (506)
T PRK13549 238 ---------------------------------MM----------------------------V---------------- 240 (506)
T ss_pred ---------------------------------Hh----------------------------h----------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHH
Q 046196 561 GALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVK 640 (1436)
Q Consensus 561 g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~ 640 (1436)
+-.
T Consensus 241 ---------------------------------------------------------------------~~~-------- 243 (506)
T PRK13549 241 ---------------------------------------------------------------------GRE-------- 243 (506)
T ss_pred ---------------------------------------------------------------------CcC--------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcC
Q 046196 641 QYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLG 720 (1436)
Q Consensus 641 ~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~ 720 (1436)
.
T Consensus 244 ----------------------------------------------------~--------------------------- 244 (506)
T PRK13549 244 ----------------------------------------------------L--------------------------- 244 (506)
T ss_pred ----------------------------------------------------c---------------------------
Confidence 0
Q ss_pred CccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCCC
Q 046196 721 KSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTE 800 (1436)
Q Consensus 721 ~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1436)
. . .. + .
T Consensus 245 ------~---~-------------------------------------------~~-~--------------------~- 250 (506)
T PRK13549 245 ------T---A-------------------------------------------LY-P--------------------R- 250 (506)
T ss_pred ------c---c-------------------------------------------cc-c--------------------c-
Confidence 0 0 00 0 0
Q ss_pred CcccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEE
Q 046196 801 EPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLT 880 (1436)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 880 (1436)
... . + ....++++|+++.++. .+++.+|+|+||+|++||++
T Consensus 251 ------~~~-------------~---------~-~~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~ 291 (506)
T PRK13549 251 ------EPH-------------T---------I-GEVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEIL 291 (506)
T ss_pred ------ccc-------------C---------C-CCceEEEecCcccccc----------ccccccccceeeEEcCCcEE
Confidence 000 0 0 0013567777654420 01235899999999999999
Q ss_pred EEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecCC---CCCCCCcHHHHHHHHHHhcC
Q 046196 881 ALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQTD---IHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 881 ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l~~~~~l~~ 953 (1436)
||+||||||||||+++|+|..++ +.+|+|.++|.++... ..++.++|++|+. .+++.+||.|++.+......
T Consensus 292 ~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~ 370 (506)
T PRK13549 292 GIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRF 370 (506)
T ss_pred EEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhh
Confidence 99999999999999999998752 2589999999875321 1234689999985 46788999999987532111
Q ss_pred CC--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHH
Q 046196 954 PP--EVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1030 (1436)
Q Consensus 954 ~~--~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~ 1030 (1436)
.. ..+.++.++.++++++.+++. +..+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++..++
T Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~ 445 (506)
T PRK13549 371 TGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIY 445 (506)
T ss_pred ccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHH
Confidence 10 012233445688999999996 456655 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCC
Q 046196 1031 RTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLG 1077 (1436)
Q Consensus 1031 ~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~ 1077 (1436)
+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..
T Consensus 446 ~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 490 (506)
T PRK13549 446 KLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINH 490 (506)
T ss_pred HHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccc
Confidence 999999888999999999986 57788999999996 6888888764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=629.61 Aligned_cols=458 Identities=21% Similarity=0.289 Sum_probs=347.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 35999999999999999999999999999999999999987 9999999998765432 2469999999888999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.++..... ..+.. ... + ..+....++.+++.+||++..++.++
T Consensus 95 ~tv~e~l~~~~~~~~--~~~~~-~~~-------------~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (510)
T PRK09700 95 LTVLENLYIGRHLTK--KVCGV-NII-------------D-----------WREMRVRAAMMLLRVGLKVDLDEKVA--- 144 (510)
T ss_pred CcHHHHhhhcccccc--ccccc-ccc-------------C-----------HHHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999987532100 00000 000 0 00111245668999999877776654
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++. . +++|+.++|+..++.++||+|++|++
T Consensus 145 --~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 145 --NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999865 3 55677789999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcC
Q 046196 403 GQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELAT 482 (1436)
Q Consensus 403 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1436)
|++++.|+++++... +..+..
T Consensus 221 G~i~~~g~~~~~~~~--------------------------------------------~~~~~~--------------- 241 (510)
T PRK09700 221 GSSVCSGMVSDVSND--------------------------------------------DIVRLM--------------- 241 (510)
T ss_pred CEEeeecchhhCCHH--------------------------------------------HHHHHh---------------
Confidence 999998876543100 000000
Q ss_pred CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhhHH
Q 046196 483 PFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGA 562 (1436)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g~ 562 (1436)
.. .. ..
T Consensus 242 -------------------------------------------------------------~~----~~-~~-------- 247 (510)
T PRK09700 242 -------------------------------------------------------------VG----RE-LQ-------- 247 (510)
T ss_pred -------------------------------------------------------------cC----CC-cc--------
Confidence 00 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHHHH
Q 046196 563 LFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQY 642 (1436)
Q Consensus 563 lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 642 (1436)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCCc
Q 046196 643 FLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKS 722 (1436)
Q Consensus 643 l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 722 (1436)
..+
T Consensus 248 -------------------------------------------------------------------------~~~---- 250 (510)
T PRK09700 248 -------------------------------------------------------------------------NRF---- 250 (510)
T ss_pred -------------------------------------------------------------------------ccc----
Confidence 000
Q ss_pred cccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCCCCc
Q 046196 723 WGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEEP 802 (1436)
Q Consensus 723 ~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1436)
. . . . +
T Consensus 251 ----~-------------------~------------------------------~--------------------~--~ 255 (510)
T PRK09700 251 ----N-------------------A------------------------------M--------------------K--E 255 (510)
T ss_pred ----c-------------------c------------------------------c--------------------c--c
Confidence 0 0 0 0 0
Q ss_pred ccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEE
Q 046196 803 VELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTAL 882 (1436)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai 882 (1436)
... . +..+..++++|+++.+ ..+|+|+||+|++||+++|
T Consensus 256 ----~~~-------------~---------~~~~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l 294 (510)
T PRK09700 256 ----NVS-------------N---------LAHETVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGF 294 (510)
T ss_pred ----ccc-------------c---------CCCCcEEEEeCccccC---------------CCcccceeEEEcCCcEEEE
Confidence 000 0 0001136777776431 1279999999999999999
Q ss_pred EccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecC---CCCCCCCcHHHHHHHHHHhc---
Q 046196 883 MGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQT---DIHSPHVTVYESLVYSAWLR--- 952 (1436)
Q Consensus 883 ~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~---~~~~~~lTv~e~l~~~~~l~--- 952 (1436)
+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|+ ..+++.+||+|++.+....+
T Consensus 295 ~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~ 372 (510)
T PRK09700 295 AGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGG 372 (510)
T ss_pred ECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccccc
Confidence 99999999999999999886 5689999999876321 234568999997 45788999999998653211
Q ss_pred CCC--C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHH
Q 046196 953 LPP--E-VDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028 (1436)
Q Consensus 953 ~~~--~-~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~ 1028 (1436)
... . ......++.++++++.+++. +..++. +..|||||||||+|||+|+.+|++|+|||||+|||+.++..
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 447 (510)
T PRK09700 373 YKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN-----ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE 447 (510)
T ss_pred ccccccccChHHHHHHHHHHHHhcCCCCCCccCc-----cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHH
Confidence 000 0 11222334578899999996 666665 35799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1029 VMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1029 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+++.|++++++|.|||++||++. .+...+|++++|++ |+++..++.
T Consensus 448 l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 448 IYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999999878999999999986 57788999999996 688888764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=625.46 Aligned_cols=449 Identities=21% Similarity=0.323 Sum_probs=345.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 35999999999999999999999999999999999999998 9999999988754321 2469999999888999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.|+......... ... .+....++.+++.+||++..|..++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGR------IDW------------------------KKMYAEADKLLARLNLRFSSDKLVG--- 140 (501)
T ss_pred CcHHHHhhhccccccccCc------cCH------------------------HHHHHHHHHHHHHcCCCCCccCchh---
Confidence 9999999986432100000 000 0011234667999999887776554
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.. .+++|+.++|+.+++.++||+|++|++
T Consensus 141 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 141 --ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS--QGRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999854 355677789999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcC
Q 046196 403 GQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELAT 482 (1436)
Q Consensus 403 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1436)
|+++..|+.+++.. .+..+.+
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHHh---------------
Confidence 99998876543210 0000000
Q ss_pred CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhhHH
Q 046196 483 PFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGA 562 (1436)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g~ 562 (1436)
+
T Consensus 238 -------------------------------------------------------------~------------------ 238 (501)
T PRK10762 238 -------------------------------------------------------------V------------------ 238 (501)
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHHHH
Q 046196 563 LFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQY 642 (1436)
Q Consensus 563 lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 642 (1436)
+
T Consensus 239 -------------------------------------------------------------------~------------ 239 (501)
T PRK10762 239 -------------------------------------------------------------------G------------ 239 (501)
T ss_pred -------------------------------------------------------------------C------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCCc
Q 046196 643 FLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKS 722 (1436)
Q Consensus 643 l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 722 (1436)
..
T Consensus 240 ------------------------------------------------------------------------------~~ 241 (501)
T PRK10762 240 ------------------------------------------------------------------------------RK 241 (501)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCCCCc
Q 046196 723 WGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEEP 802 (1436)
Q Consensus 723 ~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1436)
..... +
T Consensus 242 ~~~~~--------------------------------------------------------------------------~ 247 (501)
T PRK10762 242 LEDQY--------------------------------------------------------------------------P 247 (501)
T ss_pred ccccc--------------------------------------------------------------------------c
Confidence 00000 0
Q ss_pred ccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEE
Q 046196 803 VELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTAL 882 (1436)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai 882 (1436)
..+ . +..+..++++|++. .+|+|+||+|++||+++|
T Consensus 248 -----~~~--------~-------------~~~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~l 283 (501)
T PRK10762 248 -----RLD--------K-------------APGEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGV 283 (501)
T ss_pred -----ccc--------c-------------CCCCcEEEEeCccc------------------CCcccceEEEcCCcEEEE
Confidence 000 0 00011356666651 269999999999999999
Q ss_pred EccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecCC---CCCCCCcHHHHHHHHHHhcCC-
Q 046196 883 MGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQTD---IHSPHVTVYESLVYSAWLRLP- 954 (1436)
Q Consensus 883 ~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l~~~~~l~~~- 954 (1436)
+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|+. .+++.+||.|++.+.......
T Consensus 284 iG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~ 361 (501)
T PRK10762 284 SGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSR 361 (501)
T ss_pred ecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcc
Confidence 99999999999999999976 5689999999876421 2345699999985 577889999999875321100
Q ss_pred --CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHH
Q 046196 955 --PEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031 (1436)
Q Consensus 955 --~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~ 1031 (1436)
.....++..+.++++++.+++. +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 436 (501)
T PRK10762 362 AGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ 436 (501)
T ss_pred cccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHH
Confidence 0112233345688999999995 556655 35799999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCC
Q 046196 1032 TVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLG 1077 (1436)
Q Consensus 1032 ~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~ 1077 (1436)
.|++++++|+|||++||++. .+...+|++++|++ |+++..|+..
T Consensus 437 ~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 480 (501)
T PRK10762 437 LINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTRE 480 (501)
T ss_pred HHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 99999878999999999986 57789999999996 6888888764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=633.08 Aligned_cols=487 Identities=21% Similarity=0.232 Sum_probs=352.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC----------Ccc-------ccce
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME----------EFV-------PQRT 229 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----------~~~-------~~~~ 229 (1436)
.++|+||||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|..+. ... ..+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999987 899999986431 111 1136
Q ss_pred EEEecCCC--CcCCCCCHHHHHHhhhhhc-CCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHH
Q 046196 230 SAYISQND--LHIGEMTVRETLAFSARCQ-GVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLK 306 (1436)
Q Consensus 230 ~~yv~Q~~--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (1436)
+|||+|++ .+++.+||+||+.++.+.. +.. + .+....++++|+
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------R------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHH
Confidence 99999997 5778899999999875431 110 0 011224566789
Q ss_pred HhCCcc---cccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEE
Q 046196 307 ILGLEV---CADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISL 383 (1436)
Q Consensus 307 ~lgL~~---~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i 383 (1436)
.+||++ ..+ +.+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.++++.+.. +++||.+
T Consensus 152 ~~gL~~~~~~~~-----~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILS-----RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHh-----CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999964 234 3445799999999999999999999999999999999999999999999986533 5567778
Q ss_pred ecCchhHHHhcccEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHH
Q 046196 384 LQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEF 463 (1436)
Q Consensus 384 ~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 463 (1436)
+|+..++.++||+|++|++|++++.|+++++.+ -|.+....+++
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~---------------------------- 269 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALL---------------------------- 269 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhh----------------------------
Confidence 999999999999999999999999999876631 01000000000
Q ss_pred HHHHHhchhhhhhhhhhcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Q 046196 464 SEVFQSFHIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLF 543 (1436)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f 543 (1436)
+. .+ .. ...
T Consensus 270 -~~---------------~~--~~----~~~------------------------------------------------- 278 (623)
T PRK10261 270 -AA---------------VP--QL----GAM------------------------------------------------- 278 (623)
T ss_pred -hc---------------cC--cc----ccc-------------------------------------------------
Confidence 00 00 00 000
Q ss_pred hccccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhh
Q 046196 544 LRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVF 623 (1436)
Q Consensus 544 ~~~~~~~~~~~~~~~~~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~ 623 (1436)
. ... . |
T Consensus 279 -~---~~~-~----------------------------------------------------------~----------- 284 (623)
T PRK10261 279 -K---GLD-Y----------------------------------------------------------P----------- 284 (623)
T ss_pred -c---ccc-C----------------------------------------------------------C-----------
Confidence 0 000 0 0
Q ss_pred hhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhH
Q 046196 624 MTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWF 703 (1436)
Q Consensus 624 i~Y~~~g~~~~~~~f~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~i 703 (1436)
T Consensus 285 -------------------------------------------------------------------------------- 284 (623)
T PRK10261 285 -------------------------------------------------------------------------------- 284 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHhhhcCCccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 046196 704 SPMMYGQNALAVNEFLGKSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQ 783 (1436)
Q Consensus 704 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~ 783 (1436)
.......
T Consensus 285 -----------------~~~~~~~-------------------------------------------------------- 291 (623)
T PRK10261 285 -----------------RRFPLIS-------------------------------------------------------- 291 (623)
T ss_pred -----------------ccccccc--------------------------------------------------------
Confidence 0000000
Q ss_pred ccchHHHHhhhhccCCCCcccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCcc
Q 046196 784 AILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDR 863 (1436)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1436)
.. ... . .. +.. .. .. .+.....++++|+++.+...... .......
T Consensus 292 --------~~---~~~----~--~~-~~~------~~--~~-------~~~~~~~L~~~~l~~~y~~~~~~--~~~~~~~ 336 (623)
T PRK10261 292 --------LE---HPA----K--QE-PPI------EQ--DT-------VVDGEPILQVRNLVTRFPLRSGL--LNRVTRE 336 (623)
T ss_pred --------cc---ccc----c--cC-ccc------cc--cc-------ccCCCceEEEeeeEEEEcCCCcc--ccccCCc
Confidence 00 000 0 00 000 00 00 00001247888888766321000 0000012
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc------cccceEEEeecCC--CC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE------TFARISGYCEQTD--IH 935 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~--~~ 935 (1436)
+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++... .+++.++|++|+. .+
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l 414 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc
Confidence 459999999999999999999999999999999999986 5689999999876321 2345799999986 57
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 046196 936 SPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1014 (1436)
Q Consensus 936 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illl 1014 (1436)
++.+||.|++.+...... ....++..+.++++++.+||. ...+.. +..|||||||||+|||||+.+|++|||
T Consensus 415 ~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llll 487 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIA 487 (623)
T ss_pred CCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 889999999987643321 112334456788999999996 455554 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1015 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1015 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||||+|||+.++..+++.|++++++ |.|||++||+++ .+...+|+|++|++ |+++..|+.
T Consensus 488 DEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999765 899999999986 57788999999986 789999975
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=619.78 Aligned_cols=452 Identities=21% Similarity=0.302 Sum_probs=343.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999999998 9999999988754332 2358999999988999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.|+.... . +....++.+++.+||++..+..++
T Consensus 101 ~tv~e~l~~~~~~~-------------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (510)
T PRK15439 101 LSVKENILFGLPKR-------------Q-------------------------ASMQKMKQLLAALGCQLDLDSSAG--- 139 (510)
T ss_pred CcHHHHhhcccccc-------------h-------------------------HHHHHHHHHHHHcCCCccccCChh---
Confidence 99999998853110 0 001234567899999877776554
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++ .+++|+.++|+..++.++||+|++|++
T Consensus 140 --~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 --SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA--QGVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999864 356677789999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcC
Q 046196 403 GQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELAT 482 (1436)
Q Consensus 403 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1436)
|++++.|+++++.+. +.+ +.+.. .
T Consensus 216 G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~----~-------- 239 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------DII-----------------------------QAITP----A-------- 239 (510)
T ss_pred CEEEEecChHHcCHH---------------HHH-----------------------------HHHhC----c--------
Confidence 999999987664210 000 00000 0
Q ss_pred CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhhHH
Q 046196 483 PFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGA 562 (1436)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g~ 562 (1436)
... .. ...
T Consensus 240 ----~~~------------------------------------------------------------~~-~~~------- 247 (510)
T PRK15439 240 ----ARE------------------------------------------------------------KS-LSA------- 247 (510)
T ss_pred ----ccc------------------------------------------------------------cc-ccc-------
Confidence 000 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHHHH
Q 046196 563 LFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQY 642 (1436)
Q Consensus 563 lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 642 (1436)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCCc
Q 046196 643 FLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKS 722 (1436)
Q Consensus 643 l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 722 (1436)
...
T Consensus 248 --------------------------------------------------~~~--------------------------- 250 (510)
T PRK15439 248 --------------------------------------------------SQK--------------------------- 250 (510)
T ss_pred --------------------------------------------------ccc---------------------------
Confidence 000
Q ss_pred cccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCCCCc
Q 046196 723 WGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEEP 802 (1436)
Q Consensus 723 ~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1436)
.. ..+ + . .
T Consensus 251 ~~-----------------~~~---------------------------------~--------------------~--~ 258 (510)
T PRK15439 251 LW-----------------LEL---------------------------------P--------------------G--N 258 (510)
T ss_pred cc-----------------ccc---------------------------------c--------------------c--c
Confidence 00 000 0 0 0
Q ss_pred ccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEE
Q 046196 803 VELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTAL 882 (1436)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai 882 (1436)
. .. . +..+..++++|++. .+|+|||++|++||++||
T Consensus 259 -~--~~--------------~---------~~~~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l 294 (510)
T PRK15439 259 -R--RQ--------------Q---------AAGAPVLTVEDLTG------------------EGFRNISLEVRAGEILGL 294 (510)
T ss_pred -c--cc--------------c---------CCCCceEEEeCCCC------------------CCccceeEEEcCCcEEEE
Confidence 0 00 0 00011366677652 159999999999999999
Q ss_pred EccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecCC---CCCCCCcHHHHHHHHHHhcCCC
Q 046196 883 MGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQTD---IHSPHVTVYESLVYSAWLRLPP 955 (1436)
Q Consensus 883 ~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l~~~~~l~~~~ 955 (1436)
+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+. .+++.+|+.|++......+.+.
T Consensus 295 ~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~ 372 (510)
T PRK15439 295 AGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGF 372 (510)
T ss_pred ECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhcc
Confidence 99999999999999999876 5689999999876431 1234689999974 4788899999986421111111
Q ss_pred CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHH
Q 046196 956 EVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034 (1436)
Q Consensus 956 ~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~ 1034 (1436)
.......++.++++++.+++. +..++. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 373 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~ 447 (510)
T PRK15439 373 WIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIR 447 (510)
T ss_pred ccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHH
Confidence 111222334578999999996 566665 35799999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1035 NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1035 ~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+++++|.|||+++|+++ .+.+.+|++++|++ |++++.|..
T Consensus 448 ~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~ 487 (510)
T PRK15439 448 SIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTG 487 (510)
T ss_pred HHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 99888999999999986 57788999999985 788887754
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=621.69 Aligned_cols=445 Identities=23% Similarity=0.316 Sum_probs=341.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECC-----------------------ccC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL--GKDLKFSGRVTYNG-----------------------HGM 221 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G-----------------------~~~ 221 (1436)
+++|+|+|+++.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999996 576 89999972 221
Q ss_pred C-------Cc------cccceEEEecCC-CCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHH
Q 046196 222 E-------EF------VPQRTSAYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIM 287 (1436)
Q Consensus 222 ~-------~~------~~~~~~~yv~Q~-~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (1436)
. .. ..++.++|++|+ +.+++.+||+||+.|+....+.. .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~----------------- 142 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------G----------------- 142 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------H-----------------
Confidence 1 00 013468999997 67788899999999865432210 0
Q ss_pred HHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHH
Q 046196 288 KAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNS 367 (1436)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~ 367 (1436)
.+....++.+++.+||++..+..+ ..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.
T Consensus 143 -------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 143 -------KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred -------HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 001124566899999987666544 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhh
Q 046196 368 LRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQY 447 (1436)
Q Consensus 368 l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~ 447 (1436)
|+++++.. +++|+.++|+...+.++||+|++|++|++++.|+++++.+.+.. .
T Consensus 211 l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~----------------~---------- 263 (520)
T TIGR03269 211 LEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME----------------G---------- 263 (520)
T ss_pred HHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHh----------------h----------
Confidence 99986533 55677789999999999999999999999988876543210000 0
Q ss_pred hccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHH
Q 046196 448 WANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFF 527 (1436)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~ 527 (1436)
.
T Consensus 264 --------------------------------~----------------------------------------------- 264 (520)
T TIGR03269 264 --------------------------------V----------------------------------------------- 264 (520)
T ss_pred --------------------------------c-----------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhhhccccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHH
Q 046196 528 KMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTW 607 (1436)
Q Consensus 528 ~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~ 607 (1436)
..
T Consensus 265 --------------------------~~---------------------------------------------------- 266 (520)
T TIGR03269 265 --------------------------SE---------------------------------------------------- 266 (520)
T ss_pred --------------------------hh----------------------------------------------------
Confidence 00
Q ss_pred HHHhhHHHHHHHHHhhhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcee
Q 046196 608 ILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFI 687 (1436)
Q Consensus 608 l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~ 687 (1436)
T Consensus 267 -------------------------------------------------------------------------------- 266 (520)
T TIGR03269 267 -------------------------------------------------------------------------------- 266 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCCccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 046196 688 LSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNF 767 (1436)
Q Consensus 688 i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~ 767 (1436)
+.
T Consensus 267 -----~~------------------------------------------------------------------------- 268 (520)
T TIGR03269 267 -----VE------------------------------------------------------------------------- 268 (520)
T ss_pred -----hc-------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhcCCCCCccccchHHHHhhhhccCCCCcccccccccccccccccccccccccccCcccCCCCceeEEecccce
Q 046196 768 LFTVALKYLDPFGKPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYA 847 (1436)
Q Consensus 768 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 847 (1436)
. .. . . +.....++++|+++.
T Consensus 269 -------------~----------------~~--~------~-----------------------~~~~~~l~~~~l~~~ 288 (520)
T TIGR03269 269 -------------K----------------EC--E------V-----------------------EVGEPIIKVRNVSKR 288 (520)
T ss_pred -------------c----------------cc--c------c-----------------------CCCCceEEEeccEEE
Confidence 0 00 0 0 000013667777766
Q ss_pred eecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEEC-Ccc---CCc----
Q 046196 848 LDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITIS-GYP---KNQ---- 919 (1436)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~---~~~---- 919 (1436)
++.. ..+++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+ +..
T Consensus 289 ~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 289 YISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchh
Confidence 5210 0112459999999999999999999999999999999999986 568999996 532 111
Q ss_pred --ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-----cccccccCCCCCCCC
Q 046196 920 --ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-----IREALVGLPGVSGLS 992 (1436)
Q Consensus 920 --~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-----~~~~~~g~~~~~~LS 992 (1436)
...++.+||++|++.+++.+||.|++.+...+. ...+..++.++++++.+++.+ ..++. +..||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LS 429 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELS 429 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCC
Confidence 122456899999988889999999998754321 122333456788999999975 33443 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
|||||||+||+||+.+|++|+|||||+|||+.+...+++.|++++++ |.|||++||+++ .+.+.+|++++|++ |+++
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~ 507 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIV 507 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57788999999986 6888
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
..|+.
T Consensus 508 ~~g~~ 512 (520)
T TIGR03269 508 KIGDP 512 (520)
T ss_pred EECCH
Confidence 88864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-63 Score=619.98 Aligned_cols=464 Identities=23% Similarity=0.295 Sum_probs=344.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCccc-------cceEEEecCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL--KFSGRVTYNGHGMEEFVP-------QRTSAYISQND 237 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~ 237 (1436)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|.. ..+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 459999999999999999999999999999999999998620 128999999998754321 24699999996
Q ss_pred C--cCCCCCHHHHHHhhhhhc-CCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccc-
Q 046196 238 L--HIGEMTVRETLAFSARCQ-GVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVC- 313 (1436)
Q Consensus 238 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~- 313 (1436)
. +.+.+||+|++.+..... +.. + .+....++.+++.+||++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------R------------------------EAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHCCCCChH
Confidence 4 567789999987653211 100 0 0112345677899999752
Q ss_pred --ccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHH
Q 046196 314 --ADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETY 391 (1436)
Q Consensus 314 --~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 391 (1436)
.+.. +..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. .+.+||.++|+..++.
T Consensus 148 ~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcHHHHH
Confidence 3544 4569999999999999999999999999999999999999999999998653 2456667899999999
Q ss_pred HhcccEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhch
Q 046196 392 ELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFH 471 (1436)
Q Consensus 392 ~~~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1436)
.+||+|++|++|++++.|+++++.+. |.. ..
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~---------------------------------~~-------- 252 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH---------------------------------PY-------- 252 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC---------------------------------HH--------
Confidence 99999999999999999987665210 000 00
Q ss_pred hhhhhhhhhcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcc
Q 046196 472 IGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRS 551 (1436)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~ 551 (1436)
.+.+ +...
T Consensus 253 ----------------------------------------~~~~----------------------------~~~~---- 260 (529)
T PRK15134 253 ----------------------------------------TQKL----------------------------LNSE---- 260 (529)
T ss_pred ----------------------------------------HHHH----------------------------HHhC----
Confidence 0000 0000
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccc
Q 046196 552 TVEDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGF 631 (1436)
Q Consensus 552 ~~~~~~~~~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~ 631 (1436)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHH
Q 046196 632 ESNIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQN 711 (1436)
Q Consensus 632 ~~~~~~f~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~ 711 (1436)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhcCCccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHH
Q 046196 712 ALAVNEFLGKSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEAL 791 (1436)
Q Consensus 712 al~~nef~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~ 791 (1436)
+. . .+
T Consensus 261 ---------------~~------~-----------------------------------------~~------------- 265 (529)
T PRK15134 261 ---------------PS------G-----------------------------------------DP------------- 265 (529)
T ss_pred ---------------cc------c-----------------------------------------cc-------------
Confidence 00 0 00
Q ss_pred hhhhccCCCCcccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccce
Q 046196 792 AKKNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVS 871 (1436)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs 871 (1436)
...+ +..+..++++|+++.+....+ ..+...+.+.+|+|||
T Consensus 266 ---------------~~~~----------------------~~~~~~l~~~~l~~~~~~~~~--~~~~~~~~~~il~~is 306 (529)
T PRK15134 266 ---------------VPLP----------------------EPASPLLDVEQLQVAFPIRKG--ILKRTVDHNVVVKNIS 306 (529)
T ss_pred ---------------cccC----------------------CCCCCcccccCcEEEeecCcc--ccccccccceeeecce
Confidence 0000 000012455666554421000 0000001245999999
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc------cccceEEEeecCC--CCCCCCcHHH
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE------TFARISGYCEQTD--IHSPHVTVYE 943 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~--~~~~~lTv~e 943 (1436)
|+|++||++||+||||||||||+++|+|..+ .+|+|+++|.++... .+++.+||++|+. .+++.+||.|
T Consensus 307 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e 383 (529)
T PRK15134 307 FTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ 383 (529)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHH
Confidence 9999999999999999999999999999873 589999999875321 1245689999986 4778899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD 1022 (1436)
++.+....+.. ..+..+.++.++++++.+++. ...+.. +..|||||||||+||++|+.+|++|+|||||+|||
T Consensus 384 ~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 384 IIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred HHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 99886533211 122333445688999999996 355554 45799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1023 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1023 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+.++..+++.|++++++ |+|||++||+++ .+.+.+|++++|++ |+++..|+.
T Consensus 458 ~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 458 KTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 99999999999999865 899999999976 57788999999996 688888874
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=672.81 Aligned_cols=211 Identities=24% Similarity=0.290 Sum_probs=176.2
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..|+|+|++++++. +...+|+||||+|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999988741 22359999999999999999999999999999999999987 578999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
+.. ..+++.++||||++.++.. |++|||... ...++ +.+.++++..++.+. .|+.+|.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge- 1441 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLE- 1441 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccC-
Confidence 753 4577889999999998864 999999521 12222 236777777777543 3455554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 987 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~-p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
++.+||||||||++|||||+++ |+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....+|+|++|+
T Consensus 1442 ~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 3468999999999999999996 89999999999999999999999999864 4799999999964 677899999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 6 799999975
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-63 Score=614.75 Aligned_cols=451 Identities=21% Similarity=0.309 Sum_probs=342.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999987 9999999988753321 3569999999988999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.++......+. ... .+....++.+++.+||++..+..+
T Consensus 94 ~tv~~~l~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-------VNR------------------------RLLNYEAREQLEHLGVDIDPDTPL---- 138 (501)
T ss_pred CCHHHHHHhcccccccCC-------CCH------------------------HHHHHHHHHHHHHcCCCCCcCCch----
Confidence 999999998632100000 000 001123456789999987666554
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+++|+.++|+..++..+||+|++|++
T Consensus 139 -~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 139 -KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA--EGRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999854 356677789999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhcC
Q 046196 403 GQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELAT 482 (1436)
Q Consensus 403 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1436)
|+++..++..+. .+.++..+.
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~~~~---------------- 236 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQLVQA---------------- 236 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHHHHH----------------
Confidence 999865421100 000000000
Q ss_pred CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhhHH
Q 046196 483 PFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGA 562 (1436)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g~ 562 (1436)
+ ..
T Consensus 237 --------------------------------~----------------------------~~----------------- 239 (501)
T PRK11288 237 --------------------------------M----------------------------VG----------------- 239 (501)
T ss_pred --------------------------------h----------------------------cC-----------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHHHH
Q 046196 563 LFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQY 642 (1436)
Q Consensus 563 lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 642 (1436)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK11288 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCCc
Q 046196 643 FLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGKS 722 (1436)
Q Consensus 643 l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~~ 722 (1436)
..
T Consensus 240 ------------------------------------------------------------------------------~~ 241 (501)
T PRK11288 240 ------------------------------------------------------------------------------RE 241 (501)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCCCCc
Q 046196 723 WGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEEP 802 (1436)
Q Consensus 723 ~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1436)
.. .. .. .
T Consensus 242 ~~----------------------~~-------------------------------------------------~~--~ 248 (501)
T PRK11288 242 IG----------------------DI-------------------------------------------------YG--Y 248 (501)
T ss_pred cc----------------------cc-------------------------------------------------cc--c
Confidence 00 00 00 0
Q ss_pred ccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEE
Q 046196 803 VELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTAL 882 (1436)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai 882 (1436)
.+. +..+..++++|+++. .+++|+|++|++||++||
T Consensus 249 ------~~~---------------------~~~~~~l~~~~~~~~-----------------~~l~~isl~i~~Ge~~~i 284 (501)
T PRK11288 249 ------RPR---------------------PLGEVRLRLDGLKGP-----------------GLREPISFSVRAGEIVGL 284 (501)
T ss_pred ------ccc---------------------CCCCcEEEEeccccC-----------------CcccceeEEEeCCcEEEE
Confidence 000 000113566666521 389999999999999999
Q ss_pred EccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc----ccccceEEEeecCC---CCCCCCcHHHHHHHHHHhcC-C
Q 046196 883 MGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ----ETFARISGYCEQTD---IHSPHVTVYESLVYSAWLRL-P 954 (1436)
Q Consensus 883 ~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~~lTv~e~l~~~~~l~~-~ 954 (1436)
+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|+. .+++.+|+.|++.+...... +
T Consensus 285 iG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~ 362 (501)
T PRK11288 285 FGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLR 362 (501)
T ss_pred EcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcc
Confidence 99999999999999999986 568999999987532 12245689999985 47889999999986532110 0
Q ss_pred CC--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHH
Q 046196 955 PE--VDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031 (1436)
Q Consensus 955 ~~--~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~ 1031 (1436)
.. ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+++
T Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 437 (501)
T PRK11288 363 AGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN 437 (501)
T ss_pred cccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHH
Confidence 01 11222335678899999994 5666653 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCCc
Q 046196 1032 TVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGR 1078 (1436)
Q Consensus 1032 ~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~~ 1078 (1436)
.|++++++|.|||++|||++ .+.+.+|++++|++ |++++.|..++
T Consensus 438 ~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 438 VIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred HHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 99999888999999999986 57789999999996 68999987654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=614.44 Aligned_cols=457 Identities=19% Similarity=0.270 Sum_probs=343.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCcceEEEECCccCCCccc----cceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK--DLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~ 240 (1436)
+++|+|||+++++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++|++|++.++
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLV 90 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHhCCEEEEeeccccC
Confidence 4599999999999999999999999999999999999876 4 8999999988765332 24699999999889
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccc-ccccc
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCA-DTMVG 319 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg 319 (1436)
+.+||+||+.++.......... .. .+....++.+++.+||++.. ++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~~~~~~------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 139 (500)
T TIGR02633 91 PELSVAENIFLGNEITLPGGRM------AY------------------------NAMYLRAKNLLRELQLDADNVTRPV- 139 (500)
T ss_pred CCCcHHHHHHhhcccccccccc------CH------------------------HHHHHHHHHHHHHcCCCCCcccCch-
Confidence 9999999998864321000000 00 00112356688999997654 3334
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++. .+++|+.++|+..++.++||+|++
T Consensus 140 ----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tviiitHd~~~~~~~~d~i~~ 213 (500)
T TIGR02633 140 ----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA--HGVACVYISHKLNEVKAVCDTICV 213 (500)
T ss_pred ----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999999864 356677789999999999999999
Q ss_pred ecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhh
Q 046196 400 LSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDE 479 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1436)
|++|++++.|+.+++.. .+..+
T Consensus 214 l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~-------------- 235 (500)
T TIGR02633 214 IRDGQHVATKDMSTMSE--------------------------------------------DDIIT-------------- 235 (500)
T ss_pred EeCCeEeeecCcccCCH--------------------------------------------HHHHH--------------
Confidence 99999987664321100 00000
Q ss_pred hcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchh
Q 046196 480 LATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIY 559 (1436)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~ 559 (1436)
.+ .
T Consensus 236 ----------------------------------~~----------------------------~--------------- 238 (500)
T TIGR02633 236 ----------------------------------MM----------------------------V--------------- 238 (500)
T ss_pred ----------------------------------HH----------------------------h---------------
Confidence 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHH
Q 046196 560 MGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFV 639 (1436)
Q Consensus 560 ~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~ 639 (1436)
+.
T Consensus 239 ----------------------------------------------------------------------~~-------- 240 (500)
T TIGR02633 239 ----------------------------------------------------------------------GR-------- 240 (500)
T ss_pred ----------------------------------------------------------------------Cc--------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhc
Q 046196 640 KQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFL 719 (1436)
Q Consensus 640 ~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~ 719 (1436)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T TIGR02633 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCC
Q 046196 720 GKSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKT 799 (1436)
Q Consensus 720 ~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 799 (1436)
. ... . . + .
T Consensus 241 --~---~~~---------------~-------------------------------~-~--------------------~ 248 (500)
T TIGR02633 241 --E---ITS---------------L-------------------------------Y-P--------------------H 248 (500)
T ss_pred --c---ccc---------------c-------------------------------c-c--------------------c
Confidence 0 000 0 0 0 0
Q ss_pred CCcccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeE
Q 046196 800 EEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVL 879 (1436)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 879 (1436)
. . . . .....++++|+++.+.. .+++.+|+|+||+|++||+
T Consensus 249 ----~---~--~-----------~----------~~~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~ 288 (500)
T TIGR02633 249 ----E---P--H-----------E----------IGDVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEI 288 (500)
T ss_pred ----c---c--c-----------C----------CCCceEEEeCCcccccc----------cccccccccceeEEeCCcE
Confidence 0 0 0 0 00013667777654310 0123589999999999999
Q ss_pred EEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc----ccccceEEEeecCC---CCCCCCcHHHHHHHHHHhc
Q 046196 880 TALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ----ETFARISGYCEQTD---IHSPHVTVYESLVYSAWLR 952 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~~lTv~e~l~~~~~l~ 952 (1436)
+||+|||||||||||++|+|..++ +.+|+|.++|.++.. ...++.+||++|+. .+++.+||+|++.+...-.
T Consensus 289 ~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~ 367 (500)
T TIGR02633 289 LGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKS 367 (500)
T ss_pred EEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhh
Confidence 999999999999999999999762 258999999987642 12345689999985 4788999999998753211
Q ss_pred CC--CCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHH
Q 046196 953 LP--PEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029 (1436)
Q Consensus 953 ~~--~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i 1029 (1436)
.. ........++.++++++.+++.+ ..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 368 FCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH
Confidence 10 01122333456789999999964 45554 357999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1030 MRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1030 ~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
++.|++++++|.|||++|||++ .+.+.+|++++|++ |+++..++.
T Consensus 443 ~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 443 YKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred HHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 9999999888999999999986 57788999999986 678877754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=660.42 Aligned_cols=210 Identities=20% Similarity=0.264 Sum_probs=174.9
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++|+|++++++. +.+.+|+|||++|+|||++||+|+||||||||+++|+|..+ .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999988742 22469999999999999999999999999999999999874 48999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
+.. ..+++.++|+||++.+++. |+||||.... ..++ +.+.++++.++|.+. .|+.+|.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 754 4567889999999999875 9999995311 1222 235777887777543 3444543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
++.+||||||||+||||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 346799999999999999999999999999999999999999999999875 4799999999964 5677999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|++
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 789988875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=601.71 Aligned_cols=449 Identities=18% Similarity=0.285 Sum_probs=340.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999987 9999999998754321 3569999999888999
Q ss_pred CCHHHHHHhhhh-hcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 243 MTVRETLAFSAR-CQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 243 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
+||+||+.++.. ..+... .. .+....++.+++.+||++..++.+
T Consensus 88 ~tv~~~l~~~~~~~~~~~~--------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 132 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFV--------DQ------------------------DKMYRDTKAIFDELDIDIDPRAKV--- 132 (491)
T ss_pred CCHHHHhhccccccccccc--------CH------------------------HHHHHHHHHHHHHcCCCCCccCch---
Confidence 999999988632 100000 00 001123456788999987766555
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
..|||||||||+||+||+.+|++|||||||+|||+.+..++.+.|+++++ .+.+|+.++|+..++.++||+|++|+
T Consensus 133 --~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 133 --ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE--RGCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 45999999999999999999999999999999999999999999999864 35566678999999999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhc
Q 046196 402 DGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELA 481 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1436)
+|+++..|+++++.. .+..+.
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 229 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAM--------------- 229 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHH---------------
Confidence 999998876543200 000000
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhhH
Q 046196 482 TPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMG 561 (1436)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g 561 (1436)
+ .. . .
T Consensus 230 ---------------------------------~----------------------------~~----~----~------ 234 (491)
T PRK10982 230 ---------------------------------M----------------------------VG----R----S------ 234 (491)
T ss_pred ---------------------------------H----------------------------hC----C----C------
Confidence 0 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHHH
Q 046196 562 ALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQ 641 (1436)
Q Consensus 562 ~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 641 (1436)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCC
Q 046196 642 YFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGK 721 (1436)
Q Consensus 642 ~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~ 721 (1436)
+
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCCCC
Q 046196 722 SWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEE 801 (1436)
Q Consensus 722 ~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1436)
. ...
T Consensus 236 -----~-------------------------------------------------~~~---------------------- 239 (491)
T PRK10982 236 -----T-------------------------------------------------QRF---------------------- 239 (491)
T ss_pred -----c-------------------------------------------------ccc----------------------
Confidence 0 000
Q ss_pred cccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEE
Q 046196 802 PVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTA 881 (1436)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 881 (1436)
+ . +. . . + .+..++++|+++.. +.+|+|||+.+++||++|
T Consensus 240 ~----~--~~------~----~---------~-~~~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~ 278 (491)
T PRK10982 240 P----D--KE------N----K---------P-GEVILEVRNLTSLR---------------QPSIRDVSFDLHKGEILG 278 (491)
T ss_pred c----c--cc------C----C---------C-CCcEEEEeCccccc---------------CcccceeeEEEeCCcEEE
Confidence 0 0 00 0 0 0 01146778877641 238999999999999999
Q ss_pred EEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecCC---CCCCCCcHHHHHHHHHH--h-
Q 046196 882 LMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQTD---IHSPHVTVYESLVYSAW--L- 951 (1436)
Q Consensus 882 i~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l~~~~~--l- 951 (1436)
|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+. .+++.+|+.++..+... .
T Consensus 279 l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (491)
T PRK10982 279 IAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYK 356 (491)
T ss_pred EecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhc
Confidence 999999999999999999986 5689999999876431 1234589999985 36788888877433211 0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHH
Q 046196 952 RLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1030 (1436)
Q Consensus 952 ~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~ 1030 (1436)
...........++.++++++.+++. +..+.. +..|||||||||+||++|+.+|+||+|||||+|||+.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~ 431 (491)
T PRK10982 357 NKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIY 431 (491)
T ss_pred ccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHH
Confidence 1000012223345678889999885 344554 4579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1031 RTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1031 ~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+.|+++.++|+|||++||+++ ++...+|++++|++ |+++..++.
T Consensus 432 ~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~ 475 (491)
T PRK10982 432 QLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDT 475 (491)
T ss_pred HHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcc
Confidence 999999888999999999986 57789999999986 688776654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=594.79 Aligned_cols=446 Identities=20% Similarity=0.261 Sum_probs=327.6
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCc--C--
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLH--I-- 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~--~-- 240 (1436)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 4899999999999999999999999999999999999997 9999999976643221 2458999998532 1
Q ss_pred ----CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccc
Q 046196 241 ----GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADT 316 (1436)
Q Consensus 241 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 316 (1436)
..+||+|++.++. +....++.+++.+||++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhhC
Confidence 1467777764320 001234567889999877776
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.++ .|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++ .+.+|+.++|+..++.+.||+
T Consensus 132 ~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ--SGITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHhhCCE
Confidence 654 5999999999999999999999999999999999999999999999865 355666688999999999999
Q ss_pred EEEecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhh
Q 046196 397 LILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKL 476 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1436)
|++|++|+++.+|+++++.+. +.+..+ ..
T Consensus 205 v~~l~~G~i~~~~~~~~~~~~---------------~~~~~~----------------------------~~-------- 233 (490)
T PRK10938 205 AGVLADCTLAETGEREEILQQ---------------ALVAQL----------------------------AH-------- 233 (490)
T ss_pred EEEEECCEEEEeCCHHHHhcc---------------hhhhhh----------------------------hh--------
Confidence 999999999999987654210 000000 00
Q ss_pred hhhhcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCccccccc
Q 046196 477 GDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDG 556 (1436)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~ 556 (1436)
+ + . ...
T Consensus 234 ------------------------------------~------~------------------------------~-~~~- 239 (490)
T PRK10938 234 ------------------------------------S------E------------------------------Q-LEG- 239 (490)
T ss_pred ------------------------------------h------h------------------------------c-cCc-
Confidence 0 0 0 000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHH
Q 046196 557 GIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIE 636 (1436)
Q Consensus 557 ~~~~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 636 (1436)
.
T Consensus 240 --------------------------------------------------------------------------~----- 240 (490)
T PRK10938 240 --------------------------------------------------------------------------V----- 240 (490)
T ss_pred --------------------------------------------------------------------------c-----
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHh
Q 046196 637 RFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVN 716 (1436)
Q Consensus 637 ~f~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~n 716 (1436)
T Consensus 241 -------------------------------------------------------------------------------- 240 (490)
T PRK10938 241 -------------------------------------------------------------------------------- 240 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhc
Q 046196 717 EFLGKSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNA 796 (1436)
Q Consensus 717 ef~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 796 (1436)
. .+..
T Consensus 241 -------~-~~~~------------------------------------------------------------------- 245 (490)
T PRK10938 241 -------Q-LPEP------------------------------------------------------------------- 245 (490)
T ss_pred -------c-cCcc-------------------------------------------------------------------
Confidence 0 0000
Q ss_pred cCCCCcccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeC
Q 046196 797 CKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRP 876 (1436)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 876 (1436)
. + ...+. . . +.....++++|+++.++ ++.+|+|+||++++
T Consensus 246 --~----~--~~~~~-----------~--~------~~~~~~l~~~~l~~~~~-------------~~~il~~vsl~i~~ 285 (490)
T PRK10938 246 --D----E--PSARH-----------A--L------PANEPRIVLNNGVVSYN-------------DRPILHNLSWQVNP 285 (490)
T ss_pred --c----c--ccccc-----------c--c------CCCCceEEEeceEEEEC-------------CeeEEeeceEEEcC
Confidence 0 0 00000 0 0 00012478888877652 23589999999999
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc----ccccceEEEeecCCCCCC--CCcHHHHHHHHHH
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ----ETFARISGYCEQTDIHSP--HVTVYESLVYSAW 950 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~~~~~--~lTv~e~l~~~~~ 950 (1436)
||+++|+||||||||||+++|+|..++ +.+|+|.++|.+... ...++.+||++|++.+++ ..|+++++.+...
T Consensus 286 Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 364 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF 364 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccc
Confidence 999999999999999999999997531 248999999976422 123456899999875543 3567766654321
Q ss_pred h--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHH
Q 046196 951 L--RLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027 (1436)
Q Consensus 951 l--~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~ 1027 (1436)
. ....... .+.++.++++++.+++.+ ..+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++.
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 438 (490)
T PRK10938 365 DSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQ 438 (490)
T ss_pred cccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 1 1111111 223456789999999986 66655 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC-CEEEEEecCCCHHHHH-hhCeEEEEecCcEEEEE
Q 046196 1028 IVMRTVRNTVDTG-RTVVCTIHQPSIDIFD-AFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 1028 ~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~D~v~~l~~Gg~~~y~ 1073 (1436)
.+++.|++++++| .|||++||+++ ++.+ .+|++++|++ |+++..
T Consensus 439 ~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 439 LVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred HHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 9999999998776 47999999976 4555 5899999997 555443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-59 Score=585.32 Aligned_cols=201 Identities=21% Similarity=0.302 Sum_probs=163.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488899887652 2459999999999999999999999999999999999876 56899999542
Q ss_pred CcccccceEEEeecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 046196 918 NQETFARISGYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGq 995 (1436)
..+||++|+. .+++.+||+|++.+...... .... ...++++++.+++.+ ..+.. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 67889999999987642221 1111 122457899999964 34544 45799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE-EEc
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI-YVG 1074 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~-y~G 1074 (1436)
||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. | |||++||+++ .+...+|++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999976 5777899999998767765 555
Q ss_pred C
Q 046196 1075 P 1075 (1436)
Q Consensus 1075 ~ 1075 (1436)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-58 Score=512.00 Aligned_cols=471 Identities=24% Similarity=0.328 Sum_probs=362.1
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCcceEEEECCccCCCcccc-------ceEEEecC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK--DLKFSGRVTYNGHGMEEFVPQ-------RTSAYISQ 235 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q 235 (1436)
....+++||||.|++||.+||+|.||||||-..+.++|+++. ....+|+|.|+|.++-....+ ..|+.++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 345699999999999999999999999999999999999975 345689999999987544322 36999999
Q ss_pred CC--CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccc
Q 046196 236 ND--LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVC 313 (1436)
Q Consensus 236 ~~--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 313 (1436)
++ .+-|-.|+...|.-..++.. .+.+.....++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hr---------------------------------g~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHR---------------------------------GLSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHh---------------------------------cccHHHHHHHHHHHHHHcCCCch
Confidence 96 44555566666654443321 01112233456678999999886
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh
Q 046196 314 ADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL 393 (1436)
Q Consensus 314 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 393 (1436)
...+ +.+++.|||||||||.||.||+.+|++|+-||||++||.....+|++.|+++.... +..++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHh
Confidence 5544 57889999999999999999999999999999999999999999999999997654 67788899999999999
Q ss_pred cccEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhh
Q 046196 394 FDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIG 473 (1436)
Q Consensus 394 ~D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1436)
+|+|+||.+|+|+++|+.+++.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999999877632 1211 000
Q ss_pred hhhhhhhcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccc
Q 046196 474 QKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTV 553 (1436)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~ 553 (1436)
|.++. .
T Consensus 255 ---------------------------------------r~Ll~----------------------------a------- 260 (534)
T COG4172 255 ---------------------------------------RKLLA----------------------------A------- 260 (534)
T ss_pred ---------------------------------------HHHHh----------------------------c-------
Confidence 00000 0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccc
Q 046196 554 EDGGIYMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFES 633 (1436)
Q Consensus 554 ~~~~~~~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 633 (1436)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHH
Q 046196 634 NIERFVKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNAL 713 (1436)
Q Consensus 634 ~~~~f~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al 713 (1436)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhh
Q 046196 714 AVNEFLGKSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAK 793 (1436)
Q Consensus 714 ~~nef~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 793 (1436)
.|.+.
T Consensus 261 ------------eP~g~--------------------------------------------------------------- 265 (534)
T COG4172 261 ------------EPSGD--------------------------------------------------------------- 265 (534)
T ss_pred ------------CCCCC---------------------------------------------------------------
Confidence 00000
Q ss_pred hhccCCCCcccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEE
Q 046196 794 KNACKTEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGA 873 (1436)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~ 873 (1436)
+ ...+ +..+..++.+|++..++.+...-. ...+...++++||++
T Consensus 266 --------~----~p~~----------------------~~~~~ll~~~~v~v~f~i~~g~~~--r~~~~~~AVd~isl~ 309 (534)
T COG4172 266 --------P----PPLP----------------------EDAPVLLEVEDLRVWFPIKGGFLR--RTVDHLRAVDGISLT 309 (534)
T ss_pred --------C----CCCC----------------------CCCCceEEecceEEEEecCCcccc--ccchheEEeccceeE
Confidence 0 0000 001123444444443333221100 011234689999999
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc------cccceEEEeecCC--CCCCCCcHHHHH
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE------TFARISGYCEQTD--IHSPHVTVYESL 945 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~--~~~~~lTv~e~l 945 (1436)
+++||.+||+|.||||||||-.+|.++.. .+|+|.++|.++... .+++.+-.|+||+ .+.|.+||.+-+
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII 386 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII 386 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence 99999999999999999999999999876 369999999987532 3567788999997 478999999988
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHH
Q 046196 946 VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025 (1436)
Q Consensus 946 ~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~ 1025 (1436)
.=+.....| ..+..++.+++.++++.+||.+-. ... .+.++|||||||++|||||+.+|++++||||||.||-.-
T Consensus 387 ~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~--r~R--YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SV 461 (534)
T COG4172 387 EEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT--RNR--YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV 461 (534)
T ss_pred hhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH--hhc--CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHH
Confidence 777666544 456788999999999999998632 211 357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1026 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1026 ~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+.+|+++|+++.++ |.+-++++||.. -+-.+||+|+||.+ |+++..||.
T Consensus 462 QaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 462 QAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 99999999999754 899999999976 46779999999996 799999985
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=575.71 Aligned_cols=198 Identities=18% Similarity=0.273 Sum_probs=163.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488999887652 2358999999999999999999999999999999999876 56899999873
Q ss_pred CcccccceEEEeecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 046196 918 NQETFARISGYCEQTDI--HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgG 994 (1436)
+.+||++|+.. +++.+||+|++.+.. .. . ..++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 45899999864 556799999986421 11 1 1123468899999984 455554 4579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE-EE
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI-YV 1073 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~-y~ 1073 (1436)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||++||+++ .+...+|++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999986 459999999976 57778999999997 5665 77
Q ss_pred cCC
Q 046196 1074 GPL 1076 (1436)
Q Consensus 1074 G~~ 1076 (1436)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-58 Score=579.73 Aligned_cols=201 Identities=19% Similarity=0.282 Sum_probs=163.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 478889887652 2459999999999999999999999999999999999876 56899999542
Q ss_pred CcccccceEEEeecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 046196 918 NQETFARISGYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGq 995 (1436)
..+||++|+. .+++.+||.|++.+...... .... ...++++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 47788999999987642211 1111 123457899999864 34554 35799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE-EEc
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI-YVG 1074 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~-y~G 1074 (1436)
||||+||++|+.+|++|+|||||+|||+.+...+++.|+++. .|||++||++. .+...+|++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999976 4677899999998766765 545
Q ss_pred C
Q 046196 1075 P 1075 (1436)
Q Consensus 1075 ~ 1075 (1436)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=558.44 Aligned_cols=197 Identities=22% Similarity=0.328 Sum_probs=160.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.+.++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 478899887652 2459999999999999999999999999999999999886 56899999742
Q ss_pred CcccccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 046196 918 NQETFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTE 994 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgG 994 (1436)
..+||++|+. .+.+..|+.+++.. . .. ......+.++++.+++.. ..+.. +..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHH
Confidence 2589999974 34566778776531 1 11 112345788999999963 45554 3579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE-EE
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI-YV 1073 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~-y~ 1073 (1436)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||++|||+. .+...+|++++|++ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 349999999976 47778999999996 5665 88
Q ss_pred cCC
Q 046196 1074 GPL 1076 (1436)
Q Consensus 1074 G~~ 1076 (1436)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-56 Score=555.24 Aligned_cols=211 Identities=21% Similarity=0.266 Sum_probs=171.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ +. .|+++|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 477888876542 12 4899999999999999999999999999999999987 568999886
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++. +..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHH
Confidence 1489999998888899999999864211 111 12468899999998777765 4579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|+ | +....|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999976 4677899999996 3 66666653
Q ss_pred Ccc---hhHHHHHhhhC
Q 046196 1077 GRH---CSQLIKYFEGI 1090 (1436)
Q Consensus 1077 ~~~---~~~~~~yf~~~ 1090 (1436)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 221 12345566665
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=553.73 Aligned_cols=202 Identities=24% Similarity=0.336 Sum_probs=163.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.+.++|+++.++ ++.+|+|+|++|++|+++||+|||||||||||++|+|..+ +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 478889887652 2459999999999999999999999999999999999876 56899998 4321
Q ss_pred CcccccceEEEeecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 046196 918 NQETFARISGYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGq 995 (1436)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++. +..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHH
Confidence 489999975 5788999999998653210 111 1123467888888885 344554 35799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-cCcEEEEEc
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-RGGEEIYVG 1074 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-~Gg~~~y~G 1074 (1436)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...+|++++|. +|+-..|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999886 459999999975 4677899999997 555556767
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
.-
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=511.83 Aligned_cols=449 Identities=22% Similarity=0.359 Sum_probs=350.5
Q ss_pred CCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc----ceEEEecCCCCc
Q 046196 164 KKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ----RTSAYISQNDLH 239 (1436)
Q Consensus 164 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~~~~ 239 (1436)
....++|+||||++++||+++|+|.||||||||+|+|+|.++|+ +|+|.++|++.....+. .-++.|.|+..+
T Consensus 18 FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L 94 (500)
T COG1129 18 FGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSL 94 (500)
T ss_pred cCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhc
Confidence 34567999999999999999999999999999999999999998 99999999988765553 358999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
.|++||.|||.++.+...... . + ........+..+|+.+|++...++.||
T Consensus 95 ~p~LsVaeNifLgre~~~~~g---~---i------------------------d~~~m~~~A~~~l~~lg~~~~~~~~v~ 144 (500)
T COG1129 95 VPNLSVAENIFLGREPTRRFG---L---I------------------------DRKAMRRRARELLARLGLDIDPDTLVG 144 (500)
T ss_pred cCCccHHHHhhcccccccCCC---c---c------------------------CHHHHHHHHHHHHHHcCCCCChhhhhh
Confidence 999999999988755322100 0 0 001122345668999999755788887
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+ ||+||||-|.||||+..++++++||||||+|+...+.++++.++++.. +|..||.++|..+|++++||+|.|
T Consensus 145 ~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~DritV 217 (500)
T COG1129 145 D-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRITV 217 (500)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEEE
Confidence 5 999999999999999999999999999999999999999999999864 678888899999999999999999
Q ss_pred ecCCeEEEecCh-hHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhh
Q 046196 400 LSDGQIVYQGPR-ENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGD 478 (1436)
Q Consensus 400 L~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1436)
|.||+++..++. .++- .++..+
T Consensus 218 lRDG~~v~~~~~~~~~~--------------------------------------------~~~lv~------------- 240 (500)
T COG1129 218 LRDGRVVGTRPTAAETS--------------------------------------------EDELVR------------- 240 (500)
T ss_pred EeCCEEeeecccccCCC--------------------------------------------HHHHHH-------------
Confidence 999999876652 2110 000000
Q ss_pred hhcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccch
Q 046196 479 ELATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGI 558 (1436)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~ 558 (1436)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHH
Q 046196 559 YMGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERF 638 (1436)
Q Consensus 559 ~~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f 638 (1436)
.|+|=
T Consensus 241 --------------------------------------------------------------------~MvGr------- 245 (500)
T COG1129 241 --------------------------------------------------------------------LMVGR------- 245 (500)
T ss_pred --------------------------------------------------------------------HhhCc-------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhh
Q 046196 639 VKQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEF 718 (1436)
Q Consensus 639 ~~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef 718 (1436)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccC
Q 046196 719 LGKSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACK 798 (1436)
Q Consensus 719 ~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 798 (1436)
.... .|
T Consensus 246 ---~~~~------------------------------------------------~~----------------------- 251 (500)
T COG1129 246 ---ELED------------------------------------------------LF----------------------- 251 (500)
T ss_pred ---chhh------------------------------------------------hc-----------------------
Confidence 0000 00
Q ss_pred CCCcccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCe
Q 046196 799 TEEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGV 878 (1436)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 878 (1436)
+ . +. . . ...+..+++++++.. ..++||||++++||
T Consensus 252 ---~----~--~~--------------~-~----~~~~~~l~v~~l~~~-----------------~~~~dvSf~vr~GE 286 (500)
T COG1129 252 ---P----E--PP--------------E-E----GIGEPVLEVRNLSGG-----------------GKVRDVSFTVRAGE 286 (500)
T ss_pred ---c----c--cc--------------c-c----CCCCcEEEEecCCCC-----------------CceeCceeEEeCCc
Confidence 0 0 00 0 0 001123555555421 15889999999999
Q ss_pred EEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecC---CCCCCCCcHHHHHHHHHHh
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQT---DIHSPHVTVYESLVYSAWL 951 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~---~~~~~~lTv~e~l~~~~~l 951 (1436)
++||-|-=|||+|-|+++|.|..+ ..+|+|.+||.++... ..+.-++|||.| +-+++.++|.+|+.++...
T Consensus 287 IlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~ 364 (500)
T COG1129 287 ILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLR 364 (500)
T ss_pred EEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhh
Confidence 999999999999999999999655 4689999999986533 244568999986 4578899999999887433
Q ss_pred cCCC--CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHH
Q 046196 952 RLPP--EVDSDTRKMFVEEVMELVELNPIR-EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028 (1436)
Q Consensus 952 ~~~~--~~~~~~~~~~v~~vl~~l~l~~~~-~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~ 1028 (1436)
+... -.+....++.+++..+.+++.... +.. +..||||++|||.|||.|..+|+||+|||||.|+|..+...
T Consensus 365 ~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~e 439 (500)
T COG1129 365 RFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE 439 (500)
T ss_pred hhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHH
Confidence 3221 244455566788889998886432 222 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 1029 VMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 1029 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|.++|++++++|++||++|-+.. |+..+||||++|.+ |+++-
T Consensus 440 Iy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~ 481 (500)
T COG1129 440 IYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVG 481 (500)
T ss_pred HHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEE
Confidence 99999999999999999999985 79999999999996 67655
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-53 Score=537.43 Aligned_cols=200 Identities=19% Similarity=0.262 Sum_probs=157.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ +++.+|+|+||+|++|++++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 588999987762 12358999999999999999999999999999999999887 56899998752
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGqr 996 (1436)
..+||++|+. .+.+++.++.........+ ... .+.++++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3589999975 3445666664322111111 111 234678999999973 44443 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE-EEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI-YVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~-y~G~ 1075 (1436)
|||+||++|+.+|++|+|||||+|||+.+...+.+.|++. . .|||++||++. .+...+|++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888765 3 49999999976 46778999999996 6776 7775
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 3
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=510.94 Aligned_cols=499 Identities=24% Similarity=0.283 Sum_probs=339.9
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 244 (1436)
..+++|+|+|+.+.+|+.++|||+|||||||||++|+|.+.|+ +|+|...+ .-+++|++|++...+..|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCcc
Confidence 3457999999999999999999999999999999999999998 99999865 236999999999888999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcH---HHH-HHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDI---DLI-MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
|.+.+.-+... .++...+...... ..++++. +.+ .....+++...+.+++.+|..||++.. ++.++
T Consensus 83 v~~~v~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~- 152 (530)
T COG0488 83 VLDYVIEGFGE-----LRELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS- 152 (530)
T ss_pred HHHHHHhhhHH-----HHHHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh-
Confidence 99999876431 1222222211111 1122211 111 122333445566788889999999877 66665
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+||||||.||+||++|+.+|++|||||||++||..+..++.+.|++. .+ ++|+++|++...-+.|++|+-+
T Consensus 153 ----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 153 ----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred ----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 49999999999999999999999999999999999999999999863 35 5666899999999999999999
Q ss_pred cCCeE-EEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhh
Q 046196 401 SDGQI-VYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDE 479 (1436)
Q Consensus 401 ~~G~i-v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1436)
+.|++ .|.|.++...+.-+.. .-++....+.+++. .....++.+.+...
T Consensus 224 d~g~l~~y~Gny~~~~~~r~~~------------~~~~~~~~~~~~~~---------~~~~~~~i~r~~~~--------- 273 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQKAER------------LRQEAAAYEKQQKE---------LAKEQEWIRRGKAA--------- 273 (530)
T ss_pred cCCceeEecCCHHHHHHHHHHH------------HHHHHHHHHHHHHH---------HHHHHHHHHHHHhc---------
Confidence 99977 5788888765422110 00000000000000 00011111111110
Q ss_pred hcCCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchh
Q 046196 480 LATPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIY 559 (1436)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~ 559 (1436)
.+. + .+.+...++ +-.+..
T Consensus 274 --------~~~-----------~--k~a~sr~k~-l~k~~~--------------------------------------- 292 (530)
T COG0488 274 --------ASK-----------A--KKAKSRIKR-LEKLEA--------------------------------------- 292 (530)
T ss_pred --------cch-----------H--HHHHHHHHH-HHHHHh---------------------------------------
Confidence 000 0 000000000 000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHH
Q 046196 560 MGALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFV 639 (1436)
Q Consensus 560 ~g~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~ 639 (1436)
...
T Consensus 293 -------------------------~~~---------------------------------------------------- 295 (530)
T COG0488 293 -------------------------RLA---------------------------------------------------- 295 (530)
T ss_pred -------------------------hhh----------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhc
Q 046196 640 KQYFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFL 719 (1436)
Q Consensus 640 ~~~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~ 719 (1436)
.
T Consensus 296 ---------------------------------------------------------------------------~---- 296 (530)
T COG0488 296 ---------------------------------------------------------------------------E---- 296 (530)
T ss_pred ---------------------------------------------------------------------------h----
Confidence 0
Q ss_pred CCccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCC
Q 046196 720 GKSWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKT 799 (1436)
Q Consensus 720 ~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 799 (1436)
..+.. .
T Consensus 297 -----~~~~~---------------------------------------------------------------------~ 302 (530)
T COG0488 297 -----ERPVE---------------------------------------------------------------------E 302 (530)
T ss_pred -----ccccc---------------------------------------------------------------------c
Confidence 00000 0
Q ss_pred CCcccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeE
Q 046196 800 EEPVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVL 879 (1436)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 879 (1436)
. ...... .. . .. .+..+..++++|+++.++ +++.+++++||.|.+|+.
T Consensus 303 ----~--~~~~~~------f~--~-~~-----~~~g~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~r 350 (530)
T COG0488 303 ----G--KPLAFR------FP--P-PG-----KRLGKLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDR 350 (530)
T ss_pred ----c--ccceee------cc--C-Cc-----ccCCCeeEEEeccccccC------------CCceeecCceEEecCCCE
Confidence 0 000000 00 0 00 001234688999887763 225799999999999999
Q ss_pred EEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCC-CCCCCCcHHHHHHHHHHhcCCCCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVD 958 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~~~~~l~~~~~~~ 958 (1436)
+||+||||+|||||||+|+|... +.+|+|.+.-. -.+||..|+. .+.++.|+.|.+.-.. | ...
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~----~-~~~ 415 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGF----P-DGD 415 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhC----c-ccc
Confidence 99999999999999999999876 45899987532 2489999986 4457889999886321 1 111
Q ss_pred HHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH
Q 046196 959 SDTRKMFVEEVMELVELNPIR-EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037 (1436)
Q Consensus 959 ~~~~~~~v~~vl~~l~l~~~~-~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~ 1037 (1436)
...+...+..+++..-. .+. ++.||||||.||.+|+.++.+|.+|+|||||++||..+...+.+.|.+.
T Consensus 416 ----e~~~r~~L~~f~F~~~~~~~~-----v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f- 485 (530)
T COG0488 416 ----EQEVRAYLGRFGFTGEDQEKP-----VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF- 485 (530)
T ss_pred ----HHHHHHHHHHcCCChHHHhCc-----hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-
Confidence 34467888999887532 222 5679999999999999999999999999999999999999999999886
Q ss_pred hCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 1038 DTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 1038 ~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
..|||+||||... +-..+++++.+.+ +-..|.|.
T Consensus 486 --~Gtvl~VSHDr~F-l~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 486 --EGTVLLVSHDRYF-LDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred --CCeEEEEeCCHHH-HHhhcceEEEEcC-ceeEcCCC
Confidence 5699999999763 6678999999986 44455564
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=466.45 Aligned_cols=457 Identities=22% Similarity=0.301 Sum_probs=356.3
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc----ceEEEecCCCCcCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ----RTSAYISQNDLHIG 241 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~~~~~~ 241 (1436)
...+++|||++|++||+.||+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|. .-||.|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 577999999999999999999999999999999999999999 99999999988765554 35899999999999
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
++||.|||..+.+-... .+ +. .......++.+.+.+||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~------~~------------------------~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GL------ID------------------------RRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-cc------cC------------------------HHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999998643210 00 00 011223466788999999988888876
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
||=||||||.|-++|+.+|++|+|||||+-|-+....++++.|++++. .|.+||.++|-..|+.+.||++.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999875 46677779999999999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhccCCCCCccCCHHHHHHHHHhchhhhhhhhhhc
Q 046196 402 DGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKEFSEVFQSFHIGQKLGDELA 481 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1436)
.|+++..-++ .. ..+.+++++.
T Consensus 215 ~Gkvvgt~~~--~~-----------------------------------------~~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDP--VA-----------------------------------------ETTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecC--CC-----------------------------------------CCCHHHHHHH---------------
Confidence 9998643211 00 0000000000
Q ss_pred CCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhccccCcccccccchhhH
Q 046196 482 TPFDKSKSHPAALTTKKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMG 561 (1436)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~~t~f~~~~~~~~~~~~~~~~~g 561 (1436)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHhhcccccchhhhHHHHHHHHhhHHHHHHHHHhhhhhhhccccccHHHHHHH
Q 046196 562 ALFFAVITIMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNIERFVKQ 641 (1436)
Q Consensus 562 ~lff~v~~~~~~~~~~~~~~~~~~pvf~k~r~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 641 (1436)
|+|=
T Consensus 237 ------------------------------------------------------------------MvG~---------- 240 (501)
T COG3845 237 ------------------------------------------------------------------MVGR---------- 240 (501)
T ss_pred ------------------------------------------------------------------hcCC----------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHhHcHHHHHHHHHHHhhhcCC
Q 046196 642 YFLLLCVNQTASGLFRLMGALGRNIIVANTFGSFANLTVLVLGGFILSRDDVKKWWLWGYWFSPMMYGQNALAVNEFLGK 721 (1436)
Q Consensus 642 ~l~l~~~~~~~~~l~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~y~~~al~~nef~~~ 721 (1436)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T COG3845 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCchhHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccchHHHHhhhhccCCCC
Q 046196 722 SWGHVPPNSTEPLGVVILKSRGLFPNAYWYWIGVGALLGYVLLFNFLFTVALKYLDPFGKPQAILSEEALAKKNACKTEE 801 (1436)
Q Consensus 722 ~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1436)
... .
T Consensus 241 ~v~--------------------------------------------------------------------------~-- 244 (501)
T COG3845 241 EVV--------------------------------------------------------------------------L-- 244 (501)
T ss_pred ccc--------------------------------------------------------------------------c--
Confidence 000 0
Q ss_pred cccccccccccccccccccccccccccCcccCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEE
Q 046196 802 PVELSSGVQSSYGEVRSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTA 881 (1436)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 881 (1436)
.. ...+ . .| .+..++++|++...+ .....+++|||++++||++|
T Consensus 245 ~~---~~~~---------------~-----~p-g~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvG 288 (501)
T COG3845 245 RV---VKPP---------------S-----TP-GEVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVG 288 (501)
T ss_pred cc---ccCC---------------C-----CC-CCeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEE
Confidence 00 0000 0 00 023467777765432 11357999999999999999
Q ss_pred EEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC----Cccc-ccceEEEeecCCC---CCCCCcHHHHHHHHHHhcC
Q 046196 882 LMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK----NQET-FARISGYCEQTDI---HSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 882 i~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~----~~~~-~~~~~gyv~q~~~---~~~~lTv~e~l~~~~~l~~ 953 (1436)
|.|..|-|-+-|+.+|+|..+ +.+|+|.++|.++ +... .+.-++|+|.+-. +.+.+|+.||+.+...-+-
T Consensus 289 IAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~ 366 (501)
T COG3845 289 IAGVAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK 366 (501)
T ss_pred EEecCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccc
Confidence 999999999999999999876 3469999999986 2222 2345899998753 5689999999987654321
Q ss_pred C----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHH
Q 046196 954 P----PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029 (1436)
Q Consensus 954 ~----~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i 1029 (1436)
| .-.+....+++..++++.++........ ..+.||||++||+-+||+|.++|++|+..+||.|||..+.+.|
T Consensus 367 ~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I 442 (501)
T COG3845 367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFI 442 (501)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHH
Confidence 1 1244566777889999999887332211 2468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCC
Q 046196 1030 MRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLG 1077 (1436)
Q Consensus 1030 ~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~ 1077 (1436)
.+.|.+.++.|++|++++-+.+ ++++++|||.+|.+ |+++...+..
T Consensus 443 ~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 443 HERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred HHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 9999999999999999999987 79999999999996 7887776654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=406.12 Aligned_cols=203 Identities=20% Similarity=0.256 Sum_probs=159.4
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
+..+.++|+++.++. +..++++++|.+.+++.+|++||||||||||||++.|... |..|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 457899999887642 2258999999999999999999999999999999999887 56788754332
Q ss_pred cCCcccccceEEEeecC--CCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 916 PKNQETFARISGYCEQT--DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 916 ~~~~~~~~~~~gyv~q~--~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
. .+++..|+ +.+.-+.++-|++.-.. + .+.+.+.+..++..+||....... ..++||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQVV----PMSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCcccccc----chhhccc
Confidence 1 22333343 33444567777664211 1 133455678899999998544332 2578999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
|||+||..|+.++..|.+|+|||||+|||..+...+-+.|.+. ..+||+++||.. -+-..++++.+..+|+...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999998876 468999999976 377789999999999999999
Q ss_pred cCC
Q 046196 1074 GPL 1076 (1436)
Q Consensus 1074 G~~ 1076 (1436)
|..
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 863
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=373.16 Aligned_cols=214 Identities=28% Similarity=0.408 Sum_probs=188.5
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|++.++ +..++|+|||++|++||+++|+|||||||||||+||.|+.. +.+|+|.++|.++.
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 5667776554 45679999999999999999999999999999999999887 67999999997653
Q ss_pred ----cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 919 ----QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 919 ----~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
....++.+|+|+|+..+||++||.||+..+...- ...+.++.++.+.+.|+.+||.+.+|.. +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2346788999999999999999999998874322 2456677778889999999999988876 5689999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
|||||+|||||+.+|+++++|||||.|||+....+.+.+++++++|.|.||+||+... ..+.+|||+.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999874 6778999999995 7888888
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 75
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=369.33 Aligned_cols=222 Identities=24% Similarity=0.381 Sum_probs=187.6
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc----cccceEEEecCCCCcC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~~~~~ 240 (1436)
.+..+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|+++... ..++.+|+|+|+..+|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 3467999999999999999999999999999999999999998 99999999766321 2356799999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
|.+||.||+..+...- ... ..++.......+|+.+||.+.+|.
T Consensus 90 PHlTvleNv~lap~~v---------~~~------------------------~k~eA~~~A~~lL~~VGL~~ka~~---- 132 (240)
T COG1126 90 PHLTVLENVTLAPVKV---------KKL------------------------SKAEAREKALELLEKVGLADKADA---- 132 (240)
T ss_pred ccchHHHHHHhhhHHH---------cCC------------------------CHHHHHHHHHHHHHHcCchhhhhh----
Confidence 9999999999874311 111 112223345668999999998874
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
++..|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++ .|.|.+.++|....+.+.+|||+.|
T Consensus 133 -yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~--eGmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 133 -YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred -CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH--cCCeEEEEechhHHHHHhhheEEEe
Confidence 4567999999999999999999999999999999999999999999999986 4667777899999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHH
Q 046196 401 SDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQE 437 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 437 (1436)
++|+++.+|+++++ |..|.+....+|+..
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 99999999999887 455666556666654
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=361.07 Aligned_cols=232 Identities=26% Similarity=0.380 Sum_probs=199.3
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..+++++++.+. +.+.+|+|||++|++||+++||||||+||||||++|.|+.+ |.+|+|.++|.+
T Consensus 7 ~~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~ 71 (263)
T COG1127 7 PLIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGED 71 (263)
T ss_pred ceEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcc
Confidence 357888887654 45679999999999999999999999999999999999988 579999999998
Q ss_pred CCc------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCC
Q 046196 917 KNQ------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-REALVGLPGVS 989 (1436)
Q Consensus 917 ~~~------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~ 989 (1436)
+.+ ...++++|+++|+-.+|..+||+||+.|.. |.....+++..++.+..-++.+||... .+.. +.
T Consensus 72 i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----Ps 144 (263)
T COG1127 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PS 144 (263)
T ss_pred hhccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----ch
Confidence 643 134677999999999999999999999854 333456677777888888999999876 5544 67
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
+||||+|||++|||||+.||+|||+||||+||||.++..+.++|+++.++ |.|++++|||.+ +++..+|++++|.+ |
T Consensus 145 ELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-g 222 (263)
T COG1127 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-G 222 (263)
T ss_pred hhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-C
Confidence 89999999999999999999999999999999999999999999999876 999999999987 68999999999996 7
Q ss_pred EEEEEcCCCc----chhHHHHHhhhCCC
Q 046196 1069 EEIYVGPLGR----HCSQLIKYFEGIDG 1092 (1436)
Q Consensus 1069 ~~~y~G~~~~----~~~~~~~yf~~~~~ 1092 (1436)
++++.|+..+ ....+.+||....+
T Consensus 223 kv~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 223 KVIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 9999999631 11346788887654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=372.05 Aligned_cols=224 Identities=26% Similarity=0.348 Sum_probs=194.5
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCCC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQNDL 238 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~~ 238 (1436)
+..++|+|||++|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|.++..... ++.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999998 9999999988876543 367999999999
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 318 (1436)
++...||.||++|..+..+.. ..+...++.++|+.+||++.+|
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~--- 136 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKAD--- 136 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhc---
Confidence 999999999999998776532 1223456778999999998887
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
+++.+|||||||||+|||||+.+|+|||.|||||+|||.|+..|++.|+++.+.. +.||+.++|-++-+-+.||||.
T Consensus 137 --~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 137 --RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred --cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhhe
Confidence 4456799999999999999999999999999999999999999999999998765 5677779999999999999999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhc
Q 046196 399 LLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVT 439 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~ 439 (1436)
||++|+++++|+..++ |..|.+.-.-.|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999888 34566555566665544
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=391.37 Aligned_cols=210 Identities=31% Similarity=0.458 Sum_probs=186.1
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc--ccccceEEEeecCCCCCCCCc
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ--ETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lT 940 (1436)
++.+|+||||+|++|+++||+||||||||||||+|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 3679999999999999999999999999999999999987 579999999988654 456778999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsg 1020 (1436)
|+|+|.|.+.++.+.. +...++++++++.++|.+..++. +++||+||||||+||+||+++|++|||||||+|
T Consensus 95 ~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~G 166 (293)
T COG1131 95 VRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSIALALLHDPELLILDEPTSG 166 (293)
T ss_pred HHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcC
Confidence 9999999999986543 34456789999999999855444 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHhh
Q 046196 1021 LDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFE 1088 (1436)
Q Consensus 1021 LD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~ 1088 (1436)
|||.++..+++.|++++++| +||+++||+++ ++...||+|++|++ |++++.|+. .++...+.
T Consensus 167 LDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~----~~l~~~~~ 229 (293)
T COG1131 167 LDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP----EELKEKFG 229 (293)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH----HHHHHhhc
Confidence 99999999999999999887 89999999987 68888999999996 799999975 34555544
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=410.07 Aligned_cols=226 Identities=23% Similarity=0.414 Sum_probs=196.9
Q ss_pred ceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHH
Q 046196 118 TIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLL 197 (1436)
Q Consensus 118 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 197 (1436)
+..|+|+|+++.+.. + ++.+||+|+||+|+|||.|||||||||||||+.
T Consensus 463 ~G~IeF~~VsFaYP~------------------------------R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia 511 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPT------------------------------R-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA 511 (716)
T ss_pred cceEEEEEeeeecCC------------------------------C-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHH
Confidence 578999999998731 2 345699999999999999999999999999999
Q ss_pred HHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHH
Q 046196 198 LALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKA 274 (1436)
Q Consensus 198 ~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 274 (1436)
++|..+++|+ +|+|.+||+|+++++++ +.+|+|.|+|.+|. -||+|||.||..
T Consensus 512 sLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-------------------- 567 (716)
T KOG0058|consen 512 SLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-------------------- 567 (716)
T ss_pred HHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC--------------------
Confidence 9999999998 99999999999988764 78999999999775 599999999843
Q ss_pred ccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCC
Q 046196 275 ANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEIST 354 (1436)
Q Consensus 275 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEpts 354 (1436)
..+.|+++.|+.+++.+.. +.++++++||.||+++. .||||||||++|||||+++|+||||||.||
T Consensus 568 -----~~t~e~i~~AAk~ANah~F--------I~~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATS 633 (716)
T KOG0058|consen 568 -----NATDEEIEAAAKMANAHEF--------ITNFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATS 633 (716)
T ss_pred -----CCCHHHHHHHHHHhChHHH--------HHhCccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhh
Confidence 3455677778777776655 45799999999999877 599999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHH
Q 046196 355 GLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 355 gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~ 416 (1436)
+||+.+...+.+.|.+..+ + .|+++|.| +..+.+.+|+|+|+++|++++.|+++|+++
T Consensus 634 ALDaeSE~lVq~aL~~~~~--~-rTVlvIAH-RLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 634 ALDAESEYLVQEALDRLMQ--G-RTVLVIAH-RLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred hcchhhHHHHHHHHHHhhc--C-CeEEEEeh-hhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999988643 3 45554544 567899999999999999999999999975
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=360.32 Aligned_cols=210 Identities=24% Similarity=0.373 Sum_probs=186.2
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~ 242 (1436)
++.+++|+|++|++||+++++|||||||||+|++|.++++|+ +|+|.+||.++.+..+ ++.+|||-|+--+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 456999999999999999999999999999999999999998 9999999999987654 5789999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||.|||.+-..+.+..+ ++...+++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 999999998776654321 2234567889999999752 123577
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
++.|||||+|||.+||||+.+|+|++||||+++||+-++.++.+.++++.+..+ +||+.++|+.+|++.++|||++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~-kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELG-KTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhC-CEEEEEecCHHHHHhhhceEEEecC
Confidence 889999999999999999999999999999999999999999999999877664 5566689999999999999999999
Q ss_pred CeEEEecChhHHHH
Q 046196 403 GQIVYQGPRENVLE 416 (1436)
Q Consensus 403 G~iv~~G~~~~~~~ 416 (1436)
|+++..|++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999874
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=371.83 Aligned_cols=218 Identities=25% Similarity=0.336 Sum_probs=190.0
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
+++++++..+... ......+|+|||++|++||++||+|+||||||||++++.++.. |.+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5677776544210 1123569999999999999999999999999999999999887 67999999997653
Q ss_pred c------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 Q------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
. +..++.+|+++|+..++...||+||+.|...+.. .++++++++|.++++.+||.+..+.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 2 3456889999999999999999999999877653 56788899999999999999888876 56899
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
|||||||+|||||+.+|+||++|||||.|||.+.+.|.+.|+++.++ |.||+++||+++ -+-+.||||.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999755 999999999976 46779999999996 7999
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
..|+.
T Consensus 222 E~G~v 226 (339)
T COG1135 222 EEGTV 226 (339)
T ss_pred EeccH
Confidence 99985
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=358.30 Aligned_cols=213 Identities=27% Similarity=0.385 Sum_probs=189.3
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++|+|++..+ .++.+++|+|++|++||+++++|||||||||+|++|.++.+ +++|+|++||.++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 5677877554 34679999999999999999999999999999999999987 67999999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCH
Q 046196 919 Q---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP--IREALVGLPGVSGLST 993 (1436)
Q Consensus 919 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~--~~~~~~g~~~~~~LSg 993 (1436)
. ..++|.+|||-|.-.+||++||.||+.+...+. ..++++.+++++|+++.+||.+ +.++. +.+|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457889999999999999999999998876554 4567788889999999999985 56654 578999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
||+|||.+||||+.+|+||+||||++.|||.++..+++-++++.++ |+|||++|||.+ +.+.+.|||.+|++ |+++-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 999999999987 78999999999995 78877
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.+++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 7764
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=385.61 Aligned_cols=217 Identities=30% Similarity=0.431 Sum_probs=193.4
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-ceEEEecCCCCcCCCCCHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~~~~~~~lTV~E 247 (1436)
+|+|+|++|+.||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999998 99999999999998775 78999999999999999999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
||.|+.+.++... ++...+++++.+.|+|++..|.. ++.||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~-----P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRK-----PLQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 9999988765321 12345677889999999988754 56799
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
|||||||++||||+.+|+++|||||+|.||+..+.++...++++.+.. ++++|.++|+..|+..++|+|++|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l-~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL-GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-CCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999999999976654 5666668999999999999999999999999
Q ss_pred ecChhHHHHHHHhcCCCCCCCCCHHHHHH
Q 046196 408 QGPRENVLEFFERMGFKCPERKGVADFLQ 436 (1436)
Q Consensus 408 ~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ 436 (1436)
.|++.++. ..|...-+|+|+-
T Consensus 215 ~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred cCChHHHh--------hCccchhhhhhcC
Confidence 99999984 4677766777754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=366.22 Aligned_cols=217 Identities=26% Similarity=0.404 Sum_probs=184.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ .+ ++|+|||+++++|++++|+||||||||||+|+|.|..+ |.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 588999988874 12 59999999999999999999999999999999999887 5799999999987
Q ss_pred CcccccceEEEeecCCCC--CCCCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 918 NQETFARISGYCEQTDIH--SPHVTVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~--~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
....-+..+|||||...+ ..-+||+|-+..+..-+... ....++.++.++++|+.+|+.+++|+.+| .||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 654445689999995422 23479999998764332210 11123336779999999999999999865 69999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
|+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+.+.||+|+.|+ +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999997 5889999999997 5899999
Q ss_pred CCC
Q 046196 1075 PLG 1077 (1436)
Q Consensus 1075 ~~~ 1077 (1436)
|+.
T Consensus 221 ~~~ 223 (254)
T COG1121 221 PPE 223 (254)
T ss_pred Chh
Confidence 874
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=361.56 Aligned_cols=204 Identities=25% Similarity=0.377 Sum_probs=180.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.+.++++++.+. ...+|+|||++|.+||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 366777776653 2569999999999999999999999999999999999987 5799999999987
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.. ....+|||+|++.++|-+||+||+.++...+. .+.+++.+++++.++.+||.+..|.. +.+|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 24568999999999999999999999876653 34566677899999999999999886 5789999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
||+|||||+.+|+||+||||++.||+.++..+++.|.++.+ .++|||++|||.+ |...++|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999864 4899999999987 678899999999974
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=408.05 Aligned_cols=216 Identities=22% Similarity=0.359 Sum_probs=186.1
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46888998876521 23569999999999999999999999999999999999987 579999999988
Q ss_pred CCc--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 917 KNQ--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 917 ~~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
+.. ...++.+|||+|++.+++.+||+|++.|.++++. .+.++.++.++++++.++|.+..+..+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 743 2345679999999999999999999999876653 223344556889999999998877764 579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++ +|+|||++||+++ ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999985 5999999999986 57778999999996 7888988
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 74
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=369.60 Aligned_cols=218 Identities=28% Similarity=0.405 Sum_probs=187.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++.+|+++.++ ++.+|+|+||++++|++++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367788887763 4679999999999999999999999999999999999887 5699999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. +.+++.++|+||.....+.+||+|.+.++..-.... ....++..+.++++++.+++.+++++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 43 457789999999998889999999998874321111 1123334457899999999999999874 57999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||+.|||||+++|+||+||||||+||...+..+++.++++++ +|+|||+++||++. ....+|++++|++ |++++
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999984 59999999999984 7889999999996 79999
Q ss_pred EcCCC
Q 046196 1073 VGPLG 1077 (1436)
Q Consensus 1073 ~G~~~ 1077 (1436)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 99863
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=387.50 Aligned_cols=223 Identities=29% Similarity=0.432 Sum_probs=197.4
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-ceEEEecCCCCcCCCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~~~~~~~lT 244 (1436)
..++|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|.++....+. |.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 467999999999999999999999999999999999999998 99999999999987774 78999999999999999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.|+.+.+.... ..+...+++++|+.++|++.++ +.+.
T Consensus 94 V~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~-----R~p~ 135 (352)
T COG3842 94 VEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFAD-----RKPH 135 (352)
T ss_pred HHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhh-----hChh
Confidence 9999999987432111 0123346788999999998776 4556
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+|||||+.+|++||||||.|+||..-+.++...++++.+.. +.+.|.++|+..|...++|||++|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCc
Confidence 799999999999999999999999999999999999999999999998766 6666678999999999999999999999
Q ss_pred EEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 046196 405 IVYQGPRENVLEFFERMGFKCPERKGVADFLQEV 438 (1436)
Q Consensus 405 iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 438 (1436)
|...|+++|+ |..|...-+|+|+.+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 4578777888888654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=368.37 Aligned_cols=210 Identities=33% Similarity=0.442 Sum_probs=181.7
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCCcCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIGE 242 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~~~~~ 242 (1436)
++++|+|+|+++++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++..+ +.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 356999999999999999999999999999999999999998 99999999999877654 689999999888899
Q ss_pred CCHHHHHHhhhhh-cCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 243 MTVRETLAFSARC-QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 243 lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
+||+|-+.+|..- ++.. . ....++...++..|+.+|+.+.++..+.
T Consensus 91 ~tV~d~V~~GR~p~~~~~-------------------~------------~~~~~D~~~v~~aL~~~~~~~la~r~~~-- 137 (258)
T COG1120 91 LTVYELVLLGRYPHLGLF-------------------G------------RPSKEDEEIVEEALELLGLEHLADRPVD-- 137 (258)
T ss_pred cEEeehHhhcCCcccccc-------------------c------------CCCHhHHHHHHHHHHHhCcHHHhcCccc--
Confidence 9999999998431 1100 0 0011222356778999999999987765
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.|||||||||.|||||+++|++|+||||||+||.....++++.++++++.. +.++|.++|+.+.+..+||++++|+
T Consensus 138 ---~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 138 ---ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred ---ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 599999999999999999999999999999999999999999999998654 5666668899999999999999999
Q ss_pred CCeEEEecChhHHH
Q 046196 402 DGQIVYQGPRENVL 415 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~ 415 (1436)
+|+++++|++++++
T Consensus 214 ~G~i~a~G~p~evl 227 (258)
T COG1120 214 DGKIVAQGTPEEVL 227 (258)
T ss_pred CCeEEeecCcchhc
Confidence 99999999998875
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=364.82 Aligned_cols=224 Identities=30% Similarity=0.446 Sum_probs=189.4
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc---cCCCccc-cceEEEecCCCCcC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH---GMEEFVP-QRTSAYISQNDLHI 240 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~~~-~~~~~yv~Q~~~~~ 240 (1436)
....+++|||+.|+.||+++++|||||||||||++|+|+..|+ +|+|.+||. +.+.... .|.+|||+|+..+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 3456899999999999999999999999999999999999998 999999999 6655333 47899999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.|||.+||+||.+++.. .|+ ..+.+.+++++|+.+.|++.++
T Consensus 90 ~HmtVa~NIAFGl~~~~~-------------------~p~-------------~~~~r~rv~elL~lvqL~~la~----- 132 (345)
T COG1118 90 PHMTVADNIAFGLKVRKE-------------------RPS-------------EAEIRARVEELLRLVQLEGLAD----- 132 (345)
T ss_pred ccchHHhhhhhccccccc-------------------CCC-------------hhhHHHHHHHHHHHhcccchhh-----
Confidence 999999999999876521 010 1123446677899999987665
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+++..|||||||||++||||+..|++|+||||+++||...+..+.+.|+++....+.| .+.++|+..|++++||+|++|
T Consensus 133 ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~t-tvfVTHD~eea~~ladrvvvl 211 (345)
T COG1118 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT-TVFVTHDQEEALELADRVVVL 211 (345)
T ss_pred cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCce-EEEEeCCHHHHHhhcceEEEe
Confidence 6678899999999999999999999999999999999999999999999987655544 445899999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHH
Q 046196 401 SDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQE 437 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 437 (1436)
++|+|...||++|+. ..|...-+..|+-+
T Consensus 212 ~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 212 NQGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred cCCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 999999999999984 34555555555544
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=341.59 Aligned_cols=201 Identities=29% Similarity=0.397 Sum_probs=184.0
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC--cccccceEEEeecCCCCCCCCcH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN--QETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~--~~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
.++++||||+++.||++||+|+|||||||+|++|++.+. |++|.|++||.+.. +...++.+|.++.+..++..||+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 348999999999999999999999999999999999988 67999999999863 34567889999988889999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
+|||.|.+.+. +....+.+++.+++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999999886 34556677889999999999999999876 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|..+...+.+.++++.+.|++||++||..+ ++..+||++++|++ |++++.|..
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 999999999999999988999999999986 78889999999997 799999975
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=354.41 Aligned_cols=193 Identities=31% Similarity=0.450 Sum_probs=168.0
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc------cc-cceEEEeecCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE------TF-ARISGYCEQTDIHS 936 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~-~~~~gyv~q~~~~~ 936 (1436)
..+|++||++|++||+++|||||||||||||++|.|... |.+|.|.++|.++... .+ ++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 569999999999999999999999999999999999987 5799999999776421 23 45699999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 046196 937 PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE-ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1015 (1436)
Q Consensus 937 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~-~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlD 1015 (1436)
|++||.||+.+...+... ....+++.++++++.+||.+..+ .. +.+|||||||||+|||||+.+|++|+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999987655432 22245667899999999986655 43 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
|||.+||+.++..|++.+++++++ |+|||++|||| ++...+||++.|.+|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999865 89999999996 4778999999999854
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=346.04 Aligned_cols=211 Identities=25% Similarity=0.357 Sum_probs=179.7
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCCC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQNDL 238 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~~ 238 (1436)
..+.||+|||++|++||+++|+|||||||||||++|.|++.|+ +|+|.++|+++.+... ++++|+++|+..
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 3456999999999999999999999999999999999999998 9999999999866543 357999999999
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 318 (1436)
+|.++||+||+.|..+-.. ++.+ ...+..+..-|+..||... +
T Consensus 96 LFssltV~eNVafplre~~---------~lp~------------------------~~i~~lv~~KL~~VGL~~~----~ 138 (263)
T COG1127 96 LFSSLTVFENVAFPLREHT---------KLPE------------------------SLIRELVLMKLELVGLRGA----A 138 (263)
T ss_pred cccccchhHhhheehHhhc---------cCCH------------------------HHHHHHHHHHHHhcCCChh----h
Confidence 9999999999999764321 0111 1112233344788999754 2
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
.+.++.+||||++||++||||++.+|+++|+||||+||||.++..+.+.++++.+..+. |+++++|+.++++..+|+|+
T Consensus 139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~-T~i~VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL-TVIMVTHDLDSLLTIADRVA 217 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC-EEEEEECChHHHHhhhceEE
Confidence 35778889999999999999999999999999999999999999999999998877654 45558999999999999999
Q ss_pred EecCCeEEEecChhHHHH
Q 046196 399 LLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~~ 416 (1436)
+|.+|+|+..|+++++.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999864
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=355.21 Aligned_cols=192 Identities=25% Similarity=0.367 Sum_probs=170.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
..+|+|||++|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 56999999999999999999999999999999999999998 999999999883 4567899999999999999999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.|+.+..+... .+...+++.+|+.+||.+..| +.++.|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~-----~~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFED-----KYPHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhh-----cCcccc
Confidence 99999987654211 111225677899999998876 566789
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+.. +.|++.++|+.+|...++|||++|+++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999999999999987754 566677999999999999999999984
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=348.09 Aligned_cols=220 Identities=27% Similarity=0.342 Sum_probs=186.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|++..++ +++++|+|||+.|++||++||+|+|||||||||++|.|... +.+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 477888876552 45679999999999999999999999999999999999876 6799999999765
Q ss_pred Cc------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046196 918 NQ------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-----PEVDSDTRKMFVEEVMELVELNPIREALVGLP 986 (1436)
Q Consensus 918 ~~------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~-----~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~ 986 (1436)
.. +.+++.+||++|+..+.+.++|.+|+..+..-+.+ -....++.+..+-+.++.+|+.+.+-+..+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 24567899999999999999999999876432211 122234445567789999999988877654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
.|||||+|||+|||||+.+|+||+.|||+++|||.++..+|+.|+++++ .|.|||++.||.+. ..++|||++-|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 6999999999999999999999999999999999999999999999975 48999999999874 678999999999
Q ss_pred cCcEEEEEcCCCc
Q 046196 1066 RGGEEIYVGPLGR 1078 (1436)
Q Consensus 1066 ~Gg~~~y~G~~~~ 1078 (1436)
+ |+++|.||..+
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 6 79999999754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=358.69 Aligned_cols=204 Identities=29% Similarity=0.459 Sum_probs=183.7
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc---cCCc-ccccceEEEeecCCCCCCC
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY---PKNQ-ETFARISGYCEQTDIHSPH 938 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~q~~~~~~~ 938 (1436)
...+++|||+.|+.||++||+|||||||||||++|+|+.+ +..|.|.+||. +.+. ....|.+|||+|+..+|++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4568999999999999999999999999999999999988 57999999999 5443 3345789999999999999
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 046196 939 VTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018 (1436)
Q Consensus 939 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPT 1018 (1436)
|||.+|+.|+...+ ....+..+.+.+++++++.+.|+++.+.. +.+|||||||||++||||+.+|++|+||||+
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998776 22334566778899999999999999886 5789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1019 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1019 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
++||+.-+..+.+.|+++.++ |.|+|++|||+. ++.+.+|||++|++ |++.-.||.
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p 222 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPP 222 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCH
Confidence 999999999999999999876 999999999986 79999999999997 688888886
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=376.64 Aligned_cols=211 Identities=34% Similarity=0.461 Sum_probs=184.1
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc--cccceEEEecCCCCcCCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF--VPQRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~~~~~~~l 243 (1436)
.+++|+||||+|++|++++|+||||||||||+++|+|++.|+ +|+|.++|++.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 467999999999999999999999999999999999999997 99999999887652 3356799999999999999
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+|||.|.+++.+... ......++++++.+||++..++. +
T Consensus 94 T~~e~l~~~~~l~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-----~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSK----------------------------------EEAEERIEELLELFGLEDKANKK-----V 134 (293)
T ss_pred cHHHHHHHHHHHhCCCh----------------------------------hHHHHHHHHHHHHcCCchhhCcc-----h
Confidence 99999999988875321 01123567789999999854444 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
++||+||||||+||.||+++|++|||||||+|||+.++.++.+.|++++.. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999863 4366666889999999999999999999
Q ss_pred eEEEecChhHHHHHHH
Q 046196 404 QIVYQGPRENVLEFFE 419 (1436)
Q Consensus 404 ~iv~~G~~~~~~~~f~ 419 (1436)
++++.|+.+++...+.
T Consensus 214 ~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 214 KIIAEGTPEELKEKFG 229 (293)
T ss_pred EEEEeCCHHHHHHhhc
Confidence 9999999999876554
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=356.57 Aligned_cols=207 Identities=27% Similarity=0.431 Sum_probs=176.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCC---CCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQN---DLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~---~~~~~~lT 244 (1436)
++|+|||+++++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+......+.++|||||. |+-| .+|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~f-P~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSF-PIT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCC-CcC
Confidence 4999999999999999999999999999999999999998 99999999988777666789999995 4434 579
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+|.+..+..-+. ...... ..++...++++|+.+|+.+.+|..+|+
T Consensus 94 V~d~V~~g~~~~~-----g~~~~~-------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~---- 139 (254)
T COG1121 94 VKDVVLLGRYGKK-----GWFRRL-------------------------NKKDKEKVDEALERVGMEDLRDRQIGE---- 139 (254)
T ss_pred HHHHHHccCcccc-----cccccc-------------------------cHHHHHHHHHHHHHcCchhhhCCcccc----
Confidence 9999998732110 000001 112234677889999999999988875
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|.+.|+++.+. +.+|++++|+...+.++||+|+.| +++
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~L-n~~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICL-NRH 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEE-cCe
Confidence 9999999999999999999999999999999999999999999999764 677777999999999999999999 557
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+++++.+
T Consensus 216 ~~~~G~~~~~~~ 227 (254)
T COG1121 216 LIASGPPEEVLT 227 (254)
T ss_pred eEeccChhhccC
Confidence 889999998754
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=373.13 Aligned_cols=214 Identities=29% Similarity=0.430 Sum_probs=191.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|++..+. ...+|+|+|++|++||.++|+|||||||||||++|||+.. +++|+|.|+|.++
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 467777765542 2228999999999999999999999999999999999987 6799999999998
Q ss_pred Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
+. ...+|.+++|+|+..++|+|||+||+.|+.+.+ ..+.++..++|+++.+.|++.++.|.. +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 65 445688999999999999999999999998776 345677788899999999999999987 468999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. +...++|||.+|. .|++.-.|.
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 899999999975 7899999999999 579988887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
+
T Consensus 218 p 218 (338)
T COG3839 218 P 218 (338)
T ss_pred h
Confidence 5
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=330.60 Aligned_cols=213 Identities=28% Similarity=0.362 Sum_probs=183.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
|.|+|++..|. ..+++|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 57888776553 23569999999999999999999999999999999999877 57999999999864
Q ss_pred c------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 Q------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
. .-++|.+|+|+||..+.++.||+||+.|..... ..+.++.+++|.++++.+||.+..+.. +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 135788999999999999999999999987665 345567778899999999999888776 46899
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||+|||+||||++.+|++|+.||||-+|||..+..|++++.++.+.|.|||+.||+.+. +-..-.+++.|++ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEe
Confidence 999999999999999999999999999999999999999999999899999999999542 4445678888886 67776
Q ss_pred EcC
Q 046196 1073 VGP 1075 (1436)
Q Consensus 1073 ~G~ 1075 (1436)
...
T Consensus 218 d~~ 220 (223)
T COG2884 218 DES 220 (223)
T ss_pred ccc
Confidence 543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=336.65 Aligned_cols=213 Identities=30% Similarity=0.338 Sum_probs=185.9
Q ss_pred cCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCC
Q 046196 160 LPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQND 237 (1436)
Q Consensus 160 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~ 237 (1436)
.++++...++++||||+++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+..... .++.+|.++.+.
T Consensus 8 ~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~ 84 (245)
T COG4555 8 TKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGER 84 (245)
T ss_pred hhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCc
Confidence 344445556999999999999999999999999999999999999999 999999999875432 357899999888
Q ss_pred CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccc
Q 046196 238 LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTM 317 (1436)
Q Consensus 238 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 317 (1436)
.++..||++|||.|.+++.+.. + .+.+.+++.+.+.|+|.+|.|+.
T Consensus 85 glY~RlT~rEnl~~Fa~L~~l~----------~------------------------~~~kari~~l~k~l~l~~~~~rR 130 (245)
T COG4555 85 GLYARLTARENLKYFARLNGLS----------R------------------------KEIKARIAELSKRLQLLEYLDRR 130 (245)
T ss_pred ChhhhhhHHHHHHHHHHHhhhh----------h------------------------hHHHHHHHHHHHHhChHHHHHHH
Confidence 8899999999999998875432 1 22334677889999999999999
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
+|+ +|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++.. .+.+|+..+|..+|+..+||+|
T Consensus 131 v~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 131 VGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred Hhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhheE
Confidence 985 999999999999999999999999999999999999999999998743 3566777899999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 046196 398 ILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~~ 416 (1436)
++|++|++++.|+.+++.+
T Consensus 204 ivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 204 IVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEEecCcEEEcCCHHHHHH
Confidence 9999999999999988764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=408.53 Aligned_cols=258 Identities=29% Similarity=0.425 Sum_probs=214.1
Q ss_pred hhhhHHHHHHHHHhcccchHHHHHHHHHHHHhcCCCCCceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcc
Q 046196 80 FIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHV 159 (1436)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1436)
.++-+.-.+|+.++++.++|.-..+. ....+....+++|+|+++.+..
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~--------------------------- 483 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGP--------------------------- 483 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCC---------------------------
Confidence 45667777888888887777322110 1112223568999999999742
Q ss_pred cCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCC
Q 046196 160 LPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQN 236 (1436)
Q Consensus 160 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 236 (1436)
.+..+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||+++++..+ ++.++||+|+
T Consensus 484 -----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 484 -----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred -----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 1125899999999999999999999999999999999999998 9999999999987765 4789999999
Q ss_pred CCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccc
Q 046196 237 DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADT 316 (1436)
Q Consensus 237 ~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 316 (1436)
+.++ +.||+|||.++ .|+.+.+++++|+.+++.+.. +..++.++||
T Consensus 556 ~~Lf-~gSI~eNi~l~-------------------------~p~~~~e~i~~A~~~ag~~~f--------I~~lP~gy~t 601 (709)
T COG2274 556 PFLF-SGSIRENIALG-------------------------NPEATDEEIIEAAQLAGAHEF--------IENLPMGYDT 601 (709)
T ss_pred chhh-cCcHHHHHhcC-------------------------CCCCCHHHHHHHHHHhCcHHH--------HHhccccccc
Confidence 9855 67999999986 355666788888888877655 4569999999
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.||+.+. +||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++.+ ++|+|+ ++| +..+.+.||+
T Consensus 602 ~v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~-IaH-Rl~ti~~adr 676 (709)
T COG2274 602 PVGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVII-IAH-RLSTIRSADR 676 (709)
T ss_pred ccccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEE-EEc-cchHhhhccE
Confidence 9997665 7999999999999999999999999999999999999999999999753 455555 444 3578899999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 046196 397 LILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~~ 416 (1436)
|+||++|+|+.+|+++|+++
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999986
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=341.15 Aligned_cols=220 Identities=22% Similarity=0.313 Sum_probs=181.6
Q ss_pred CCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecC
Q 046196 162 SRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQ 235 (1436)
Q Consensus 162 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q 235 (1436)
.+..++++|+|||++|++||+++|+|||||||||||++|.|..+|+ +|+|.+||.++..... ++.+||++|
T Consensus 12 ~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ 88 (258)
T COG3638 12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88 (258)
T ss_pred ecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEec
Confidence 3335567999999999999999999999999999999999999998 9999999988765542 367999999
Q ss_pred CCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc
Q 046196 236 NDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD 315 (1436)
Q Consensus 236 ~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 315 (1436)
+..+.+.+||.+|+..+..-+. +..+. -.+.. ..++...+-+.|+.+|+.+.+-
T Consensus 89 ~~nLv~r~sv~~NVl~grl~~~--s~~~s---------lfglf---------------sk~dk~~Al~aLervgi~~~A~ 142 (258)
T COG3638 89 QFNLVPRLSVLENVLLGRLGYT--STWRS---------LFGLF---------------SKEDKAQALDALERVGILDKAY 142 (258)
T ss_pred cCCcccccHHHHHHHhhhcccc--hHHHH---------HhCCC---------------CHHHHHHHHHHHHHcCcHHHHH
Confidence 9999999999999998753211 11111 01111 1122234445789999998887
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcc
Q 046196 316 TMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFD 395 (1436)
Q Consensus 316 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 395 (1436)
+..+ .|||||+|||+|||||+++|+++|-|||+++||+.++.++++.|++.+...+.|+|+ .+|..+-+.++||
T Consensus 143 qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~-nLH~vdlA~~Y~~ 216 (258)
T COG3638 143 QRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIV-NLHQVDLAKKYAD 216 (258)
T ss_pred HHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEE-EechHHHHHHHHh
Confidence 7765 499999999999999999999999999999999999999999999998765555555 5677889999999
Q ss_pred cEEEecCCeEEEecChhHHHH
Q 046196 396 DLILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 396 ~iivL~~G~iv~~G~~~~~~~ 416 (1436)
||+-|++|+|+|.||++++.+
T Consensus 217 Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 217 RIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred hheEecCCcEEEeCChhhhhH
Confidence 999999999999999998754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=334.12 Aligned_cols=221 Identities=24% Similarity=0.388 Sum_probs=177.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCcc-----ccceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG--KDLKFSGRVTYNGHGMEEFV-----PQRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~~~~ 239 (1436)
+.+|+|||+.|+++++||++|||||||||||++|....+ |..+++|+|.++|+++.+.. .++++|.|+|.+.-
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 459999999999999999999999999999999998865 45678999999999886542 35789999999998
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCC-cccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGL-EVCADTMV 318 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 318 (1436)
|| +|++||+.||.+..|... +.+.+ +++.-|+.-+| ++..|.+
T Consensus 100 Fp-~SIydNVayG~r~~g~~~--~~lde--------------------------------iVe~sLk~AaLWdEVKDrL- 143 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKD--KELDE--------------------------------IVESSLKKAALWDEVKDRL- 143 (253)
T ss_pred CC-chHHHHHHHhHHhhccch--HHHHH--------------------------------HHHHHHHHhHhHHHhHHHh-
Confidence 88 999999999999877533 11111 11222222222 1122222
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
++...+|||||+||++|||||+-+|+|||||||||+|||.++..|.+.+.++.+ .-+|+.++|.+.++.+..|+..
T Consensus 144 -~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~ta 219 (253)
T COG1117 144 -HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTA 219 (253)
T ss_pred -hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhh
Confidence 123457999999999999999999999999999999999999999999999853 4566668999999999999999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHH
Q 046196 399 LLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFL 435 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 435 (1436)
.+..|++++.|+.+++ |..|.++...||+
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999999999987 4456666666654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=372.12 Aligned_cols=215 Identities=27% Similarity=0.397 Sum_probs=191.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|++..+ +...+|+|+|++|++||+++|+|||||||||||++|||... |.+|+|.++|.++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 57788876554 34679999999999999999999999999999999999987 6799999999998
Q ss_pred Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.. ...+|.+|+|+|+..+||+|||+||+.|+.+++. ....++.+++++++++.++|.+..+.. +.+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 65 3457889999999999999999999999987442 334566778899999999999988876 468999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+||||.|+||..-+..++.-++++.++ |.|.|++|||.. +...++|||.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999998754 999999999976 78999999999996 78888887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
+
T Consensus 221 P 221 (352)
T COG3842 221 P 221 (352)
T ss_pred H
Confidence 5
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=370.42 Aligned_cols=215 Identities=28% Similarity=0.409 Sum_probs=186.9
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|++..+. ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 3588899887652 2459999999999999999999999999999999999987 579999999998
Q ss_pred CCc--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 917 KNQ--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 917 ~~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
+.. ...++.+||++|+..+++.+||+||+.|.+.++. .+..+..++++++++.++|.+..++.+ ++||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 2345779999999999999999999998766542 233344456789999999988777764 579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999986 67889999999996 7999999
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 221 ~~ 222 (306)
T PRK13537 221 AP 222 (306)
T ss_pred CH
Confidence 85
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=342.75 Aligned_cols=196 Identities=27% Similarity=0.403 Sum_probs=166.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~ 239 (1436)
.++|+|||++|++||+++|+|||||||||||++|.|+..|+ +|+|.++|.++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999988876542 2569999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++++||+||+.+...+.+.... ......+.+++.+||++..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~---- 136 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL---- 136 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc----
Confidence 9999999999987665543210 01223566889999986655
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
++.+..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++++. .++++++++|+. ++...|||++.
T Consensus 137 ~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd~-~lA~~~dr~i~ 214 (226)
T COG1136 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHDP-ELAKYADRVIE 214 (226)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCCH-HHHHhCCEEEE
Confidence 2335579999999999999999999999999999999999999999999998764 356666677764 77889999999
Q ss_pred ecCCeE
Q 046196 400 LSDGQI 405 (1436)
Q Consensus 400 L~~G~i 405 (1436)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999984
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=365.30 Aligned_cols=229 Identities=21% Similarity=0.363 Sum_probs=188.5
Q ss_pred cCCCCCceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCC
Q 046196 112 VGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSS 191 (1436)
Q Consensus 112 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 191 (1436)
..+..+.-.|+|+|+++++. .+++||+++||+|++||.+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 45667778899999999873 223499999999999999999999999
Q ss_pred CHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhh
Q 046196 192 GKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQEL 268 (1436)
Q Consensus 192 GKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 268 (1436)
||||++++|.++++ + +|+|.+||.++++..+ ++.+|||||+..+| +.||.+||.+|..
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~-------------- 450 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNP-------------- 450 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCC--------------
Confidence 99999999999998 5 8999999999987665 46799999988755 5699999999842
Q ss_pred hHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeE
Q 046196 269 SRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348 (1436)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~ill 348 (1436)
+...|++.++|+..+-++. +..|+++++|.||+++.. |||||||||++|||++.+|+|++
T Consensus 451 -----------sas~eeV~e~~k~a~~hd~--------i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 451 -----------SASDEEVVEACKRAGLHDV--------ISRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred -----------CcCHHHHHHHHHHcCcHHH--------HHhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEE
Confidence 2222333333333332221 345899999999998875 99999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHH
Q 046196 349 MDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 349 LDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~ 416 (1436)
+|||||+||+.|...+++.+.+. .++.|+|.+.|.. .+...||+|++|++|++...|+++|++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~---~~~rTvI~IvH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV---MSGRTVIMIVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh---cCCCeEEEEEecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999983 2344444455654 5788999999999999999999999976
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=328.47 Aligned_cols=218 Identities=26% Similarity=0.348 Sum_probs=185.1
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC---CCceeEEEEEC
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYVSGSITIS 913 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~ 913 (1436)
..++++|++..+ +.+++|+|||+.|++++++|+||||||||||||++|..... +-..+|+|.++
T Consensus 6 ~~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~ 72 (253)
T COG1117 6 PAIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLD 72 (253)
T ss_pred ceeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEEC
Confidence 357788887766 34679999999999999999999999999999999998532 33578999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 046196 914 GYPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPG 987 (1436)
Q Consensus 914 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~ 987 (1436)
|+++.. ..+++.+|+|+|.+.-|| +|++||+.|+.++..-.+ ++..+.|++.++...|.+ ++|.+-..
T Consensus 73 g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-- 146 (253)
T COG1117 73 GKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-- 146 (253)
T ss_pred CeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--
Confidence 988643 346888999999999999 999999999987764332 566677888888888864 44555333
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
..+|||||+|||||||+|+-+|+||+||||||+|||.+...|-++|.+++ +.-|||++||.+. ......|+..++..
T Consensus 147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~- 223 (253)
T COG1117 147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL- 223 (253)
T ss_pred ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-
Confidence 35799999999999999999999999999999999999999999999997 4689999999976 57778999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++.+|+.
T Consensus 224 G~LvE~g~T 232 (253)
T COG1117 224 GELVEFGPT 232 (253)
T ss_pred cEEEEEcCH
Confidence 699999986
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=367.49 Aligned_cols=217 Identities=25% Similarity=0.324 Sum_probs=185.1
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. ...+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 5788887766310 112469999999999999999999999999999999999987 57999999998864
Q ss_pred cc------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 QE------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
.. ..++.+||++|+..+++..||+||+.+..... ..+.++.++++.++++.+||.+..+.. +..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 13567999999999999999999999876433 233455566789999999999887765 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999976 57788999999985 7999
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99975
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=364.88 Aligned_cols=206 Identities=22% Similarity=0.327 Sum_probs=177.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~~~~ 240 (1436)
.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++....+ ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999998876432 35799999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.|+.+..+... .+...++.++++.+||++..|...
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998754332110 011224567899999988777554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+.. +.+|+.++|+.+.+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 5699999999999999999999999999999999999999999999987643 456666899999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=366.45 Aligned_cols=206 Identities=22% Similarity=0.372 Sum_probs=178.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-ceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~~~~~~~lTV 245 (1436)
..+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+. +.++||+|+..+++++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 99999999988765543 679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+.++... .+....++++++.+||.+..|.. ++.
T Consensus 96 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~-----~~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRY-----VDQ 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhh
Confidence 999999865432110 01123456789999998776644 457
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF-NITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986533 45666689999999999999999999999
Q ss_pred EEecChhHHH
Q 046196 406 VYQGPRENVL 415 (1436)
Q Consensus 406 v~~G~~~~~~ 415 (1436)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=367.27 Aligned_cols=208 Identities=24% Similarity=0.349 Sum_probs=179.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcc--eEEEECCccCCCccc-cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFS--GRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~l 243 (1436)
..+|+|+|++|++|++++|+|||||||||||++|+|+++|+ + |+|.++|.++....+ ++.++||+|+..+++.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35899999999999999999999999999999999999998 8 999999998865443 36799999999999999
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.|+.+..+... .+....++++++.+||++..|+.+
T Consensus 95 tv~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~----- 135 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLP----- 135 (362)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCCh-----
Confidence 99999999865432110 011234567899999998777554
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|
T Consensus 136 ~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999865432566777899999999999999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++..|+++++.+
T Consensus 216 ~i~~~g~~~~~~~ 228 (362)
T TIGR03258 216 RLAAHGEPQALYD 228 (362)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998853
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=367.14 Aligned_cols=207 Identities=26% Similarity=0.415 Sum_probs=179.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 35899999999999999999999999999999999999998 9999999998865444 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+....++.+++.+||++..|.. ++.
T Consensus 94 ~eNi~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~l~L~~~~~~~-----~~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------R------------------------AEVAERVAELLDLVGLPGSERKY-----PGQ 134 (353)
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCCchhhCC-----hhh
Confidence 99999986532210 0 01123467789999999877754 456
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45666689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
++.|+++++.+
T Consensus 214 ~~~g~~~~~~~ 224 (353)
T TIGR03265 214 EQVGTPQEIYR 224 (353)
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=347.41 Aligned_cols=207 Identities=28% Similarity=0.388 Sum_probs=181.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC----CccccceEEEecCC-CCcCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME----EFVPQRTSAYISQN-DLHIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~-~~~~~ 241 (1436)
..+|+|+|+.|++|+.++|+||||||||||+++|+|++.|. +|+|.++|.+.. ....++.+|||+|+ +.++.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 56999999999999999999999999999999999999998 899999998865 22345789999999 56788
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
..||.|.++|+.+..+... ++...+++.+|+.+||.+.++ +
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~-----r 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLD-----R 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhcc-----C
Confidence 8899999999988766432 112345678899999998876 4
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.+..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++... ++.++|+++|+...+.+++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 45679999999999999999999999999999999999999999999998753 45677778999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|+++++|+++++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887754
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=351.07 Aligned_cols=202 Identities=26% Similarity=0.384 Sum_probs=173.1
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc------ccccceEEEeecCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ------ETFARISGYCEQTDIHSP 937 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~q~~~~~~ 937 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 359999999999999999999999999999999999987 568999999987642 124567999999999999
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 046196 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1017 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP 1017 (1436)
.+||+||+.+...... ..+.++..+.++++++.+++.+..++. +..|||||||||+||++|+.+|++|+||||
T Consensus 91 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p~llllDEP 163 (235)
T cd03261 91 SLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKKRVALARALALDPELLLYDEP 163 (235)
T ss_pred CCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999988643221 123344455678899999998766655 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1018 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1018 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|+|||+.++..+++.|++++++ |+|||+++|+++ ++...+|++++|++ |++++.|+.
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 9999999999999999998764 899999999986 57778999999996 788888874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.37 Aligned_cols=250 Identities=22% Similarity=0.389 Sum_probs=206.3
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhcCCCCCceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCc
Q 046196 87 IERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKP 166 (1436)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1436)
+|+.+++++|++| +.+.........++..|.|+|+++.++ .+
T Consensus 509 mEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~---------------------------------p~ 550 (790)
T KOG0056|consen 509 MENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYD---------------------------------PG 550 (790)
T ss_pred HHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecC---------------------------------CC
Confidence 4567777777666 444333444556778999999998874 23
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---ccceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---PQRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~l 243 (1436)
+++|+||||++.||+.+|++||||+||||++++|.++.+.+ +|.|+++|++++... .++.+|.|||+..+| +.
T Consensus 551 k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLF-Nd 626 (790)
T KOG0056|consen 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLF-ND 626 (790)
T ss_pred CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceee-cc
Confidence 56999999999999999999999999999999999999987 999999999987543 346799999998866 45
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
|+..||.|+ +|++..|++.+|++.++-++ ++++++++++|.||+++.
T Consensus 627 TI~yNIrya-------------------------k~~AsneevyaAAkAA~IHd--------rIl~fPegY~t~VGERGL 673 (790)
T KOG0056|consen 627 TILYNIRYA-------------------------KPSASNEEVYAAAKAAQIHD--------RILQFPEGYNTRVGERGL 673 (790)
T ss_pred eeeeheeec-------------------------CCCCChHHHHHHHHHhhHHH--------HHhcCchhhhhhhhhccc
Confidence 999999986 34444455555544433222 478999999999999999
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+ |||||||||+|||+++..|.|++|||.||+||..+.++|..+|.+++. ++|+|+.. |+..+.-.+|.|+++++|
T Consensus 674 k-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA--HRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 674 K-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA--HRLSTIVNADLILVISNG 748 (790)
T ss_pred c-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe--eeehheecccEEEEEeCC
Confidence 7 999999999999999999999999999999999999999999999875 67777743 345677789999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+|++.|.++|++.
T Consensus 749 ~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 749 RIVERGRHEELLK 761 (790)
T ss_pred eEeecCcHHHHHh
Confidence 9999999999875
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=327.32 Aligned_cols=207 Identities=25% Similarity=0.353 Sum_probs=183.7
Q ss_pred CCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccc----cceEEEeecCCCC
Q 046196 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETF----ARISGYCEQTDIH 935 (1436)
Q Consensus 860 ~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~----~~~~gyv~q~~~~ 935 (1436)
++++++++++||+.+++||++||+|||||||||.+.++.|... +.+|+|.+||.+++.... +.-+||+||+...
T Consensus 13 ~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred hhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchH
Confidence 3456789999999999999999999999999999999999987 579999999999865332 2348999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 046196 936 SPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1015 (1436)
Q Consensus 936 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlD 1015 (1436)
|..+||+||+......+.. +....+++...+++++.+++.++++... ..||||||||+.|||||+.+|+.++||
T Consensus 91 Fr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred hhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEec
Confidence 9999999999877666532 2233466667889999999999999873 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||++|+||-+...|+++++.+++.|..|++|-|... +....+||.+++.+ |+++..|.+
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p 223 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSP 223 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCH
Confidence 999999999999999999999999999999999987 78999999999997 799999975
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=369.43 Aligned_cols=206 Identities=26% Similarity=0.368 Sum_probs=178.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+++++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 45999999999999999999999999999999999999998 9999999998876544 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+....++++++.+||++..+..+ +.
T Consensus 94 ~eNi~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------K------------------------AEIEERVAEAARILELEPLLDRKP-----RE 134 (356)
T ss_pred HHHHHhHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hh
Confidence 99999986532210 0 011234567899999988776554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++||||||||+||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999986533 56677789999999999999999999999
Q ss_pred EEecChhHHH
Q 046196 406 VYQGPRENVL 415 (1436)
Q Consensus 406 v~~G~~~~~~ 415 (1436)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999999874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=367.89 Aligned_cols=214 Identities=27% Similarity=0.397 Sum_probs=187.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|++..+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 477888877652 2458999999999999999999999999999999999987 5799999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.. ...+|.+||++|+..++|++||+||+.|....+ ..+.++.++.++++++.++|.++.+.. +.+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 223577999999999999999999999986543 234455667789999999999888765 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68899999999996 78999997
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 5
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=367.84 Aligned_cols=214 Identities=26% Similarity=0.399 Sum_probs=185.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|++..++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 67888876651 12458999999999999999999999999999999999987 57999999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 Q-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
. ...++.+|||+|+..++|++||+||+.|....+ ..+..+..+.++++++.++|.+..+.. ++.|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHH
Confidence 3 223467999999999999999999999986543 234455566789999999999888776 4579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+.
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999999999999999998765 899999999986 68899999999985 799999985
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=365.68 Aligned_cols=214 Identities=25% Similarity=0.402 Sum_probs=187.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 578889887652 2458999999999999999999999999999999999987 5799999999887
Q ss_pred Ccc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
... ..++.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.+++.++.+.. +..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 532 23467999999999999999999999987543 234455667889999999999887765 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68899999999996 78999997
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 221 ~ 221 (351)
T PRK11432 221 P 221 (351)
T ss_pred H
Confidence 5
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=363.52 Aligned_cols=215 Identities=26% Similarity=0.376 Sum_probs=186.0
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 3588999887652 3459999999999999999999999999999999999987 569999999988
Q ss_pred CCc--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 917 KNQ--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 917 ~~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
+.. ...++.+||++|+..+++.+||+|++.+.+.+.. .+..+..+.++++++.++|.+..++.+ ++||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2345679999999999999999999997665432 223334456788999999988777764 479999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||+|++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999986 67889999999996 7999999
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 85
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=364.39 Aligned_cols=208 Identities=20% Similarity=0.309 Sum_probs=179.2
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDL 238 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~ 238 (1436)
.+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456999999999999999999999999999999999999998 9999999998876543 457999999999
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 318 (1436)
+++++||+||+.|+.+..+... .+....+..+++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCCh
Confidence 9999999999999865433210 011224566789999987776554
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+.. +.+|+.++|+..++..++|+|+
T Consensus 128 -----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~-~~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 128 -----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL-QKTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999886533 4566668999999999999999
Q ss_pred EecCCeEEEecChhHHHH
Q 046196 399 LLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~~ 416 (1436)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=396.41 Aligned_cols=226 Identities=24% Similarity=0.418 Sum_probs=196.5
Q ss_pred ceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHH
Q 046196 118 TIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLL 197 (1436)
Q Consensus 118 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 197 (1436)
..+|+|+|+++.+. ++ +..+||+|+|++|++|+.+||||||||||||.+
T Consensus 985 ~G~I~~~~V~F~YP------------------------------sR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI 1033 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYP------------------------------TR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI 1033 (1228)
T ss_pred eeEEEEeeeEeeCC------------------------------CC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHH
Confidence 46799999998862 22 345699999999999999999999999999999
Q ss_pred HHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHH
Q 046196 198 LALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKA 274 (1436)
Q Consensus 198 ~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 274 (1436)
.+|-.+++|+ +|+|.++|+++++++.+ +++|.|+|+|.+| +.|+||||.||.+
T Consensus 1034 ~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF-~~TIrENI~YG~~-------------------- 1089 (1228)
T KOG0055|consen 1034 SLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLF-NGTIRENIAYGSE-------------------- 1089 (1228)
T ss_pred HHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhh-cccHHHHHhccCC--------------------
Confidence 9999999998 99999999999988764 6899999999966 5599999999821
Q ss_pred ccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCC
Q 046196 275 ANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEIST 354 (1436)
Q Consensus 275 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEpts 354 (1436)
+.+++++++|+..++.+.. +.+||+++||.||+++. .||||||||++||||+++||+||||||.||
T Consensus 1090 -----~vs~~eIi~Aak~ANaH~F--------I~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATS 1155 (1228)
T KOG0055|consen 1090 -----EVSEEEIIEAAKLANAHNF--------ISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATS 1155 (1228)
T ss_pred -----CCCHHHHHHHHHHhhhHHH--------HhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccch
Confidence 1244667777777776655 56899999999999887 599999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHH
Q 046196 355 GLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 355 gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~ 416 (1436)
+||+++.+-+.+.|.+.. .++|+|+. .|+..+...+|.|+|+++|+|+++|++++++.
T Consensus 1156 ALDseSErvVQeALd~a~--~gRT~IvI--AHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1156 ALDSESERVVQEALDRAM--EGRTTIVI--AHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hhhhhhHHHHHHHHHHhh--cCCcEEEE--ecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 999999999999999864 36677763 34567899999999999999999999999976
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=358.04 Aligned_cols=206 Identities=27% Similarity=0.375 Sum_probs=177.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lT 244 (1436)
..+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+||++|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999875432 2467999999999999999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.|.++..+... .+....++.+++.+||.+..++.++
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG----- 137 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----
Confidence 9999998655432110 0011234667899999988887765
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|...++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999854 35667778999999999999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+++++.+
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=314.18 Aligned_cols=201 Identities=22% Similarity=0.343 Sum_probs=174.1
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-ceEEEecCCCCcCCCCCHHHHHH
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
.+++.|.+||++||+||||||||||||+|+|+..|. +|+|.+||++.....|. |-++.++|+..+|..+||++|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 578899999999999999999999999999999998 99999999998876664 77999999999999999999999
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
+|..- +- ++. .+....++.++..+||..+.+..- ..|||||
T Consensus 94 LGl~P---~L------kL~-------------------------a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGq 134 (231)
T COG3840 94 LGLSP---GL------KLN-------------------------AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQ 134 (231)
T ss_pred ccCCc---cc------ccC-------------------------HHHHHHHHHHHHHhChhhHhhhCc-----cccCchH
Confidence 87421 10 011 112345677899999999887554 4699999
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecC
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGP 410 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~ 410 (1436)
||||++||+|+.+.+||+||||+|+||+.-+.+....+.+++... +.|+++++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~-~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER-KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999988765 4555567888899999999999999999999999
Q ss_pred hhHHH
Q 046196 411 RENVL 415 (1436)
Q Consensus 411 ~~~~~ 415 (1436)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98775
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=365.12 Aligned_cols=218 Identities=27% Similarity=0.386 Sum_probs=184.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999998865544 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+....++++++.+||++..+..+ ..
T Consensus 104 ~eNi~~~l~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTP----------A------------------------AEITPRVMEALRMVQLEEFAQRKP-----HQ 144 (375)
T ss_pred HHHHHHHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 99999986532210 0 011224567899999988777554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++||||||+++||..++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987643 55666689999999999999999999999
Q ss_pred EEecChhHHHHHHHhcCCCCCCCCCHHHHH
Q 046196 406 VYQGPRENVLEFFERMGFKCPERKGVADFL 435 (1436)
Q Consensus 406 v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 435 (1436)
+..|+++++.+ .|....+++|+
T Consensus 224 ~~~g~~~~i~~--------~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIYE--------EPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHHh--------CcccHHHHHhc
Confidence 99999998743 45444445554
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=316.25 Aligned_cols=208 Identities=25% Similarity=0.356 Sum_probs=180.4
Q ss_pred ccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEE
Q 046196 159 VLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAY 232 (1436)
Q Consensus 159 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~y 232 (1436)
+++.|.....+|+|||+.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++..... +|++|.
T Consensus 7 V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGv 83 (223)
T COG2884 7 VSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGV 83 (223)
T ss_pred hhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeee
Confidence 3344555566999999999999999999999999999999999999998 9999999999875542 478999
Q ss_pred ecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc
Q 046196 233 ISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV 312 (1436)
Q Consensus 233 v~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 312 (1436)
|+|+..+++..||.||++|+.+..|..+ .+.+.++..+|+..||.+
T Consensus 84 VFQD~rLL~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~ 129 (223)
T COG2884 84 VFQDFRLLPDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKH 129 (223)
T ss_pred EeeeccccccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccch
Confidence 9999999999999999999988766432 122345677899999998
Q ss_pred cccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHH
Q 046196 313 CADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYE 392 (1436)
Q Consensus 313 ~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 392 (1436)
.++. .+..|||||||||+||||++.+|++|+-||||-.||+.++..|++.+.++.+ .||+|++.+|+..-+..
T Consensus 130 k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 130 KARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNR 202 (223)
T ss_pred hhhc-----CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHh
Confidence 8764 4567999999999999999999999999999999999999999999999865 47888888999888888
Q ss_pred hcccEEEecCCeEEEecC
Q 046196 393 LFDDLILLSDGQIVYQGP 410 (1436)
Q Consensus 393 ~~D~iivL~~G~iv~~G~ 410 (1436)
+--+++.|++|+++....
T Consensus 203 ~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 203 MRHRVLALEDGRLVRDES 220 (223)
T ss_pred ccCcEEEEeCCEEEeccc
Confidence 888999999999987643
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=365.02 Aligned_cols=214 Identities=26% Similarity=0.353 Sum_probs=186.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCcee--EEEEECCc
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVS--GSITISGY 915 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~--G~i~i~g~ 915 (1436)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 477888887653 2358999999999999999999999999999999999987 567 99999998
Q ss_pred cCCc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 916 PKNQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 916 ~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
++.. ...++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..++. ++.||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHH
Confidence 8643 223567999999999999999999999986543 234455566789999999999888876 4589999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++..++|+|++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 67889999999986 79999
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9975
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=360.81 Aligned_cols=202 Identities=28% Similarity=0.396 Sum_probs=176.6
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc--ccccceEEEeecCCCCCCCCc
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ--ETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lT 940 (1436)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3469999999999999999999999999999999999987 579999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsg 1020 (1436)
|+|++.+.+.++. .+..+..+.++++++.++|.+..++.+ +.|||||||||+||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 223344556889999999988777654 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1021 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1021 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 67788999999996 789999975
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=341.90 Aligned_cols=199 Identities=31% Similarity=0.426 Sum_probs=169.3
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-cccceEEEeecCCCCCCCCcHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-TFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+..+++.+|++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 459999999999999999999999999999999999876 5699999999876432 2345689999998888999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD 1022 (1436)
|++.+..... ....+...+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 91 ENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998765332 122333445678899999998776665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1023 ARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1023 ~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
+.++..+++.|+++++ .|+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999876 4899999999976 57788999999996 6776654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=392.44 Aligned_cols=206 Identities=26% Similarity=0.393 Sum_probs=171.5
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++++||+.++|+||||||||||+++|+|++ |+ +|+|.+||+++++... ++.++||+|++++| +.|
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF-~~T 438 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLP-HGT 438 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCC-CcC
Confidence 5899999999999999999999999999999999999 86 8999999999887654 46799999999866 569
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++|||.++. |+.+.+++.+++...+.+.. +-.|+++.||.||+++.
T Consensus 439 I~eNI~~g~-------------------------~~~~~eei~~al~~a~l~~~--------i~~lp~G~dT~vge~G~- 484 (588)
T PRK11174 439 LRDNVLLGN-------------------------PDASDEQLQQALENAWVSEF--------LPLLPQGLDTPIGDQAA- 484 (588)
T ss_pred HHHHhhcCC-------------------------CCCCHHHHHHHHHHhCHHHH--------HHhcccccccccccCCC-
Confidence 999999862 22233444445444333221 23478889999998754
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++||||++++|+||+||||||+||+.++..|.+.|+++. .++|+|+ ++|.. ++...+|+|++|++|+
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIi-ItHrl-~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLM-VTHQL-EDLAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEE-EecCh-HHHHhCCEEEEEeCCe
Confidence 699999999999999999999999999999999999999999998863 2445444 56654 6678899999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++++|+++++++
T Consensus 561 i~e~G~~~eL~~ 572 (588)
T PRK11174 561 IVQQGDYAELSQ 572 (588)
T ss_pred EeecCCHHHHHh
Confidence 999999999874
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=342.41 Aligned_cols=207 Identities=25% Similarity=0.327 Sum_probs=173.9
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 567788776521 11359999999999999999999999999999999999876 56899999998763
Q ss_pred cc------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 QE------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
.. ..++.++|++|++.+++.+||.||+.+....+. ...++..+.++++++.+++.+..+.. +..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHAL-----PMQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 21 134679999999999999999999988754331 22333445678999999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999777999999999986 566789999999864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=341.91 Aligned_cols=215 Identities=24% Similarity=0.343 Sum_probs=188.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.+.++|++|.++. +..+|+|+|+.|++||.++|+|+||||||||+++|+|..+ +.+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeec
Confidence 3678888887631 1469999999999999999999999999999999999988 5689999999986
Q ss_pred C----cccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 918 N----QETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 918 ~----~~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
. ...+++.+|||+|++. .+..-||.|.+.|+.... ..+.++.+++++++++.+++.+.++.. +..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 5 3456788999999964 456789999999986543 345566788899999999999988775 46899
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
|||||||+||.+|+.+|++|+|||||||||+.++..+++.++++..+ |+|||++|||.+ .+.+.+|++++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 689999999976 57788999999996 7899
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
+.|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99974
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=363.21 Aligned_cols=214 Identities=24% Similarity=0.351 Sum_probs=186.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999887653 2458999999999999999999999999999999999987 5799999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.. ...++.+||++|+..++|++||+||+.|+...+ ..+..+.++.++++++.++|.+..+.. +..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 43 223567999999999999999999999976533 233445566789999999999888776 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68889999999996 79999987
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 5
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=361.80 Aligned_cols=216 Identities=26% Similarity=0.405 Sum_probs=184.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 66778776652 2459999999999999999999999999999999999987 56999999998864
Q ss_pred cc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 919 QE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 919 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.. ..++.+||++|+..++|++||+||+.|....... ...+.++..++++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 32 2346799999999999999999999987653211 1223445566789999999998877765 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|++ |+++..|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998766 899999999986 68889999999996 79999997
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 5
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=326.19 Aligned_cols=205 Identities=26% Similarity=0.308 Sum_probs=175.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc----ccceEEEecCCC--CcCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV----PQRTSAYISQND--LHIG 241 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~--~~~~ 241 (1436)
++|+|||++|.+||..+|+|+||||||||.++|+|+.+|+ +|+|.++|.+..... ..+.+-+|+|++ .+-|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 5999999999999999999999999999999999999998 999999998765542 246789999995 6788
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
..||++.|.=+.+..+..+ ...++.++|+.+||+...- ++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~l----~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSFL----DR 137 (252)
T ss_pred chhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHHH----hc
Confidence 8999999876554322111 1112567899999986432 46
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.+..|||||||||+|||||..+|++|++|||||+||++...+|++.|.++.+. .+.+++.++|+..-+..+||||+||+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeee
Confidence 67789999999999999999999999999999999999999999999998764 45677779999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|++++.++.+++..
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999999864
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=374.02 Aligned_cols=217 Identities=29% Similarity=0.452 Sum_probs=177.1
Q ss_pred cCCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEE
Q 046196 832 LPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSIT 911 (1436)
Q Consensus 832 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~ 911 (1436)
.|.-...++|+|++|+++. +...+|+|+|++|+|||.+||+|+||||||||+|+|+|+.+ |.+|+|+
T Consensus 465 ~~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEE
Confidence 3444568999999998852 22369999999999999999999999999999999999988 5799999
Q ss_pred ECCccCC---cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------cccccc
Q 046196 912 ISGYPKN---QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-------NPIREA 981 (1436)
Q Consensus 912 i~g~~~~---~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l-------~~~~~~ 981 (1436)
+||.+++ ...+++.+|||+|++.++ +-|++||+.++. | ..+.++ +.++++.-|. ..-.++
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~----p-~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGN----P-EATDEE----IIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCC----C-CCCHHH----HHHHHHHhCcHHHHHhccccccc
Confidence 9999864 456789999999998876 469999998643 2 222222 2222222222 222345
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeE
Q 046196 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 982 ~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
.+|. ++.+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|.++. +|+|+|+++|+++ .+..+|+|
T Consensus 602 ~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred cccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 5554 356899999999999999999999999999999999999999999999975 4799999999975 78899999
Q ss_pred EEEecCcEEEEEcCC
Q 046196 1062 LLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1062 ~~l~~Gg~~~y~G~~ 1076 (1436)
++|++ |+++..|+.
T Consensus 678 iVl~~-Gkiv~~gs~ 691 (709)
T COG2274 678 IVLDQ-GKIVEQGSH 691 (709)
T ss_pred EEccC-CceeccCCH
Confidence 99995 799999986
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=359.20 Aligned_cols=210 Identities=26% Similarity=0.355 Sum_probs=177.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999999998 9999999998865443 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+....... ... .+....++.+++.+||++..|..+ ..
T Consensus 92 ~eni~~~~~~~~~~~~------~~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------PNA------------------------AAIKAKVTQLLEMVQLAHLADRYP-----AQ 136 (353)
T ss_pred HHHHHhhhhhcccccC------CCH------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 9999998643210000 000 011234567899999987776544 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+. .+.+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998653 355667789999999999999999999999
Q ss_pred EEecChhHHH
Q 046196 406 VYQGPRENVL 415 (1436)
Q Consensus 406 v~~G~~~~~~ 415 (1436)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999884
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=338.88 Aligned_cols=198 Identities=26% Similarity=0.432 Sum_probs=170.1
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..++.++|++|+..+++.+|++|
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 358999999999999999999999999999999999876 579999999987643 34567999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
|+.+....+. ....+..+.++++++.+++.+..++. +..||||||||++||++|+.+|++++|||||+|||+
T Consensus 90 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~ 161 (210)
T cd03269 90 QLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161 (210)
T ss_pred HHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 9988654432 22333445678899999998766654 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1024 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1024 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 162 ~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 162 VNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999998877899999999976 56778999999986 6776654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=342.72 Aligned_cols=207 Identities=28% Similarity=0.376 Sum_probs=172.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc------ccceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV------PQRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 35999999999999999999999999999999999999997 999999998875432 235699999999889
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++.+.... ... .+....++.+++.+||++..++.+
T Consensus 90 ~~~tv~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (235)
T cd03261 90 DSLTVFENVAFPLREHTR---------LSE------------------------EEIREIVLEKLEAVGLRGAEDLYP-- 134 (235)
T ss_pred CCCcHHHHHHHHHhhccC---------CCH------------------------HHHHHHHHHHHHHcCCchhhcCCh--
Confidence 999999999886432100 000 001123456788999987666555
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.++||+|++|
T Consensus 135 ---~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 135 ---AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEEEEE
Confidence 469999999999999999999999999999999999999999999997643 2456666889999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999988763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=339.82 Aligned_cols=200 Identities=28% Similarity=0.391 Sum_probs=171.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
+.+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.. .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 469999999999999999999999999999999999876 569999999987642 3467999999998888999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
|+.+....+. ...+...+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988654331 22333445678999999998766665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEec-CcEEEEEcCC
Q 046196 1024 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKR-GGEEIYVGPL 1076 (1436)
Q Consensus 1024 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-Gg~~~y~G~~ 1076 (1436)
.++..+.+.|+++.+ .|+|||+++|+++ ++...+|++++|++ .|+++..++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999986 57788999999995 4788887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=356.17 Aligned_cols=214 Identities=25% Similarity=0.367 Sum_probs=182.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 477888877652 2459999999999999999999999999999999999886 5699999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046196 918 NQ--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq 995 (1436)
.. ...++.+||++|+..+++.+||+|++.+.+... ..+..+..+.++++++.+++.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 223567999999999999999999998755432 1223333456788999999988777654 5799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 57788999999986 78999997
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=389.74 Aligned_cols=225 Identities=28% Similarity=0.441 Sum_probs=187.4
Q ss_pred CceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHH
Q 046196 117 PTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTL 196 (1436)
Q Consensus 117 ~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTL 196 (1436)
+..+++|+|+++.++. ++++|+|+|++++|||.+||+||||||||||
T Consensus 325 ~~~~I~f~~vsf~y~~---------------------------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl 371 (567)
T COG1132 325 TIGSIEFENVSFSYPG---------------------------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTL 371 (567)
T ss_pred CCCeEEEEEEEEEcCC---------------------------------CCccccCceEEEcCCCEEEEECCCCCCHHHH
Confidence 4467999999988631 3459999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHH
Q 046196 197 LLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREK 273 (1436)
Q Consensus 197 L~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 273 (1436)
+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|. .||+|||.++.
T Consensus 372 ~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-------------------- 427 (567)
T COG1132 372 IKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-------------------- 427 (567)
T ss_pred HHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC--------------------
Confidence 99999999997 9999999999987765 478999999988776 79999999973
Q ss_pred HccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCC
Q 046196 274 AANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEIS 353 (1436)
Q Consensus 274 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEpt 353 (1436)
|+.+.|++.++++..+.++. +..|+++.||.||+++. +||||||||++||||++.+|+||+|||||
T Consensus 428 -----~~at~eei~~a~k~a~~~d~--------I~~lp~g~dt~vge~G~-~LSgGQrQrlaiARall~~~~ILILDEaT 493 (567)
T COG1132 428 -----PDATDEEIEEALKLANAHEF--------IANLPDGYDTIVGERGV-NLSGGQRQRLAIARALLRNPPILILDEAT 493 (567)
T ss_pred -----CCCCHHHHHHHHHHhChHHH--------HHhCcccccceecCCCc-cCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 22333555555554433222 23468899999996655 69999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHH
Q 046196 354 TGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 354 sgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~ 416 (1436)
|+||+.+...|.+.++++.+ ++|+++ +.|.. .+...+|+|++|++|+++++|+++|++.
T Consensus 494 SalD~~tE~~I~~~l~~l~~--~rT~ii-IaHRl-sti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 494 SALDTETEALIQDALKKLLK--GRTTLI-IAHRL-STIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred cccCHHhHHHHHHHHHHHhc--CCEEEE-EeccH-hHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999997643 456666 66655 4555699999999999999999999976
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=340.04 Aligned_cols=201 Identities=30% Similarity=0.396 Sum_probs=172.4
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc--ccccceEEEeecCCCCCCCCcH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ--ETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 459999999999999999999999999999999999876 569999999987532 2234578999999989999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
+|++.+....+. ...++..+.++++++.+++.+..++. +..||||||||++||+||+.+|++|+|||||+||
T Consensus 91 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la~al~~~p~llllDEPt~~L 162 (220)
T cd03265 91 WENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGL 162 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 999988654431 22333445678999999998776665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1022 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 163 DPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999876 899999999986 57788999999986 688888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=338.32 Aligned_cols=210 Identities=26% Similarity=0.404 Sum_probs=176.1
Q ss_pred EEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc
Q 046196 840 TFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ 919 (1436)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 919 (1436)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 4667766542 2358999999999999999999999999999999999876 569999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 046196 920 E-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKR 998 (1436)
Q Consensus 920 ~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqR 998 (1436)
. ..++.++|++|++.+++..|++||+.+....+ ....++..+.++++++.+++.+..+.. +..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHH
Confidence 2 22356999999998888999999998765432 122344455678899999998776665 35799999999
Q ss_pred HHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 999 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 999 l~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999764 899999999975 57778999999986 6777765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=349.64 Aligned_cols=205 Identities=19% Similarity=0.228 Sum_probs=154.9
Q ss_pred CCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECC
Q 046196 835 EPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG 914 (1436)
Q Consensus 835 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 914 (1436)
.+..+.+.++.+.++. +.-+++.+++..++.-..++++|+||+||||+++++.|... +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc
Confidence 3456888888766531 11268999999999999999999999999999999999766 4578776654
Q ss_pred ccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 915 YPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 915 ~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
+++++|-.|..+-+-++.|-+- .+....+ |. ...+ ..++-+..+||..-. +-. .+.+||||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG-~~~e----e~r~hl~~~Gl~g~l---a~~-si~~LSGG 486 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PG-KTEE----EIRRHLGSFGLSGEL---ALQ-SIASLSGG 486 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHHH-HHHHHhC-CC-CCHH----HHHHHHHhcCCCchh---hhc-cccccCCc
Confidence 3568899987655444555432 2333332 22 2222 246778888887422 111 25689999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||-||.+|.....+|.+|+|||||+.||-.+-..+.+.|++. +..||++||+.+ -+-..|+++++.++|...-+.|
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeec
Confidence 999999999999999999999999999999999999999986 457999999965 3667899999999876555566
Q ss_pred C
Q 046196 1075 P 1075 (1436)
Q Consensus 1075 ~ 1075 (1436)
.
T Consensus 563 ~ 563 (582)
T KOG0062|consen 563 G 563 (582)
T ss_pred c
Confidence 4
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=359.59 Aligned_cols=202 Identities=25% Similarity=0.312 Sum_probs=177.6
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cc----cceEEEeecCCCC
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TF----ARISGYCEQTDIH 935 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~q~~~~ 935 (1436)
.+.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .+ ++.+|||+|+..+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4569999999999999999999999999999999999987 5799999999887532 22 5679999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 046196 936 SPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1015 (1436)
Q Consensus 936 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlD 1015 (1436)
+|++||+||+.|...+. ..+.+++.+++.++++.++|.+..+.. +..|||||||||+|||||+.+|+||+||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~-----p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRY-----PDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 234455667789999999998877765 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||++||+.++..+++.++++.++ |+|||++||+++ ++...+|+|++|++ |+++..|+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 999999999999999999998754 899999999976 57889999999986 789999974
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=311.40 Aligned_cols=196 Identities=28% Similarity=0.338 Sum_probs=172.5
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-ccccceEEEeecCCCCCCCCcHHHHHHH
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVYESLVY 947 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~ 947 (1436)
..++.|.+||++||+||||||||||||+|+|... |.+|+|+|||.+... ....|-++.++|+..+|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 3678999999999999999999999999999987 579999999998654 3345668999999999999999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHH
Q 046196 948 SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027 (1436)
Q Consensus 948 ~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~ 1027 (1436)
+.. |.-.-..+.+++++.++..+||..+.+.+. ..|||||||||++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 542 211113445667899999999999988874 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1028 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1028 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
.+..++.+++++ +.|++++||+|+ +.....|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 999999999854 899999999997 78999999999997 799999985
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=329.42 Aligned_cols=224 Identities=26% Similarity=0.365 Sum_probs=188.7
Q ss_pred CCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc----ceEEEecCCC
Q 046196 162 SRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ----RTSAYISQND 237 (1436)
Q Consensus 162 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~~ 237 (1436)
++....++++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. .-++..+|..
T Consensus 12 k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~ 88 (250)
T COG0411 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQIT 88 (250)
T ss_pred eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccc
Confidence 3446678999999999999999999999999999999999999998 99999999999887765 3478889999
Q ss_pred CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccc
Q 046196 238 LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTM 317 (1436)
Q Consensus 238 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 317 (1436)
.+|++|||.||+..+...+.. +...... +.. .-+..+.......+|+.+||.+.+|+.
T Consensus 89 rlF~~lTVlENv~va~~~~~~---~~~~l~~----------~~~---------~~~e~~~~e~A~~~Le~vgL~~~a~~~ 146 (250)
T COG0411 89 RLFPGLTVLENVAVGAHARLG---LSGLLGR----------PRA---------RKEEREARERARELLEFVGLGELADRP 146 (250)
T ss_pred cccCCCcHHHHHHHHhhhhhh---hhhhhcc----------ccc---------hhhHHHHHHHHHHHHHHcCCchhhcch
Confidence 999999999999988654321 0000000 000 001112234456789999999999998
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
.|+ ||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+ ..+.+|+.+-|++.-++.+||||
T Consensus 147 A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri 220 (250)
T COG0411 147 AGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRI 220 (250)
T ss_pred hhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEE
Confidence 875 999999999999999999999999999999999999999999999865 35678888999999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 046196 398 ILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~~ 416 (1436)
+||+.|+++.+|+++++.+
T Consensus 221 ~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 221 VVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred EeccCCcCcccCCHHHHhc
Confidence 9999999999999999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=342.87 Aligned_cols=204 Identities=28% Similarity=0.375 Sum_probs=172.5
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---c-ccceEEEeecCCCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---T-FARISGYCEQTDIHSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~q~~~~~~~l 939 (1436)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 358999999999999999999999999999999999976 5689999999876432 1 234589999999999999
Q ss_pred cHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 046196 940 TVYESLVYSAWLRLPPE-------VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1012 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~-------~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~il 1012 (1436)
||+|++.+......... ....+..+.++++++.+++.+..+.. ++.||||||||++||++|+.+|++|
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988754321110 01233445678999999998766654 4579999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1013 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1013 llDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 999999999999999999999998877899999999986 57788999999986 788888874
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=325.73 Aligned_cols=216 Identities=26% Similarity=0.347 Sum_probs=177.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++.+|++..+.... ....+|+|||++|.+||++||+|+||||||||.++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 467788776653211 11259999999999999999999999999999999999987 5799999999876
Q ss_pred Ccc----cccceEEEeecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 046196 918 NQE----TFARISGYCEQTDI--HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-REALVGLPGVSG 990 (1436)
Q Consensus 918 ~~~----~~~~~~gyv~q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~ 990 (1436)
... .+.+.+.+|+||+. +.|..||++.|.=.... ...++.+ +++.++++.+||.+- .+.. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chh
Confidence 443 35678999999974 67999999988644322 2233332 338999999999753 3332 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
||||||||++|||||+.+|++|++|||||+||+..+..|+++|.++.++ |.|.|+++||.+ -+..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999765 789999999976 47779999999997 79
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..+|.
T Consensus 220 ivE~~~~ 226 (252)
T COG1124 220 IVEIGPT 226 (252)
T ss_pred EEEeech
Confidence 9999986
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=359.43 Aligned_cols=217 Identities=24% Similarity=0.312 Sum_probs=183.0
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. ..++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5678887766310 112469999999999999999999999999999999999987 56999999998864
Q ss_pred cc------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 QE------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
.. ..++.+||++|+..+++.+||+||+.+....+ ..+..+.++.++++++.++|.+..++. +..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 23467999999999999999999999875443 123344456688999999998777665 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 57788999999986 7899
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99874
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=359.63 Aligned_cols=207 Identities=23% Similarity=0.339 Sum_probs=178.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999998865443 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.||+.|+.+..+.. + .+....++.+++.+||.+..+.. +++
T Consensus 109 ~eNi~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~l~L~~~~~~~-----~~~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------K------------------------AEIASRVNEMLGLVHMQEFAKRK-----PHQ 149 (377)
T ss_pred HHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhh
Confidence 99999986532210 0 01122456789999998766644 457
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||++||..++.++.+.|+++.+.. +.+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999886544 46666689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 229 ~~~g~~~~~~~ 239 (377)
T PRK11607 229 VQIGEPEEIYE 239 (377)
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=341.72 Aligned_cols=201 Identities=26% Similarity=0.364 Sum_probs=172.3
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---c-ccceEEEeecCCCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---T-FARISGYCEQTDIHSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~q~~~~~~~l 939 (1436)
+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 459999999999999999999999999999999999986 5689999999875321 1 234689999999999999
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs 1019 (1436)
||+||+.+....+. ....+..+.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+
T Consensus 91 tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 162 (232)
T cd03218 91 TVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRVEIARALATNPKFLLLDEPFA 162 (232)
T ss_pred cHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 99999987643321 22233445678899999998766655 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1020 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1020 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 163 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 217 (232)
T cd03218 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTP 217 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCH
Confidence 99999999999999999877899999999986 68889999999986 788888875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=360.14 Aligned_cols=214 Identities=24% Similarity=0.374 Sum_probs=186.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|++..+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 588899887652 2358999999999999999999999999999999999987 5699999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.. ...++.+||++|+..++|++||.||+.|....+ ..+..+.+++++++++.++|.+..+.. +.+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234577999999999999999999999876543 233455566789999999999887765 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ .|.|+|++||+++ ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999999865 4899999999986 68899999999996 79999998
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 5
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=359.52 Aligned_cols=206 Identities=25% Similarity=0.390 Sum_probs=176.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999998865433 3579999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. . .+....++.+++.+||++..++.+ ..
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~lgL~~~~~~~~-----~~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAK----------K------------------------EEINQRVNQVAEVLQLAHLLDRKP-----KA 133 (369)
T ss_pred HHHHHhHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hh
Confidence 99999976432210 0 001124566889999987776554 46
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986533 45666689999999999999999999999
Q ss_pred EEecChhHHH
Q 046196 406 VYQGPRENVL 415 (1436)
Q Consensus 406 v~~G~~~~~~ 415 (1436)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=338.58 Aligned_cols=215 Identities=28% Similarity=0.438 Sum_probs=178.3
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. .....+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 4677777665310 011259999999999999999999999999999999999876 56999999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 919 Q--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 919 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
. ..+++.++|++|++.+++.+||+||+.+....+ ....++..+.++++++.+++.+..+.. ++.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHH
Confidence 3 234567999999998999999999998765433 122334456678999999998776665 357999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++...+|++++|++ |+++..|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999976 57788999999986 6776543
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=361.46 Aligned_cols=214 Identities=26% Similarity=0.390 Sum_probs=183.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888877652 2458999999999999999999999999999999999987 5699999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.. ...++.+||++|+..+++.+||+||+.|....+ ..+.++..+.++++++.++|.+..+.. +..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 43 123467999999999999999999999876543 123344556789999999998877765 357999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 67889999999996 78999887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 5
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=353.58 Aligned_cols=206 Identities=26% Similarity=0.368 Sum_probs=176.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lT 244 (1436)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999998875421 1356999999999999999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.+.++..+... .+....++.+++.+||++..++.++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----
Confidence 9999998755432110 0011235668999999987776664
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+..++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE--EGVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999864 35667778999999999999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999998765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=359.36 Aligned_cols=206 Identities=31% Similarity=0.475 Sum_probs=169.9
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+..+..+ +++++||+|++.++ ..|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf-~gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF-AGT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccc-ccc
Confidence 6899999999999999999999999999999999999998 9999999999877664 57899999999855 569
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
+||||.++.. +.+.+++.++....+ +.+.+.-+++.||.+|+.+ +
T Consensus 411 ireNi~l~~~-------------------------~~s~e~i~~al~~a~---------l~~~v~~p~GLdt~ige~G-~ 455 (559)
T COG4988 411 IRENILLARP-------------------------DASDEEIIAALDQAG---------LLEFVPKPDGLDTVIGEGG-A 455 (559)
T ss_pred HHHHhhccCC-------------------------cCCHHHHHHHHHHhc---------HHHhhcCCCcccchhccCC-C
Confidence 9999999732 222222333222211 2233333668899999765 5
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+|||||+|||++|||++++++++++||||++||.+|+..|.+.|.++++ ++| ++.++|. .+...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~kt-vl~itHr-l~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKT-VLVITHR-LEDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCe-EEEEEcC-hHHHhcCCEEEEecCCc
Confidence 7999999999999999999999999999999999999999999999865 344 4445554 46677899999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999999864
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=353.62 Aligned_cols=206 Identities=28% Similarity=0.375 Sum_probs=176.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lT 244 (1436)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+||++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999875432 2467999999999899999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.|.....+... . +....++.+++.+||++..++.++
T Consensus 131 v~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~ll~~~~L~~~~~~~~~----- 171 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------R------------------------EIEAVIPSLLEFARLESKADARVS----- 171 (340)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhCCChh-----
Confidence 9999987554332100 0 011234567889999988887765
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.. .+++|+.++|+..++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999864 35667778999999999999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++++|+++++.+
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=338.45 Aligned_cols=192 Identities=31% Similarity=0.444 Sum_probs=164.5
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCccc-------ccceEEEeecCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET-------FARISGYCEQTDIHS 936 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~-------~~~~~gyv~q~~~~~ 936 (1436)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 469999999999999999999999999999999999986 56999999998764311 235699999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 046196 937 PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016 (1436)
Q Consensus 937 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDE 1016 (1436)
+.+||+|++.+....+. ....+..+.++++++.+++.+..+.. ++.||||||||++||++|+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998764431 22233445678999999998776655 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 1017 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1017 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ +.+|++++|++|
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~G 216 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRDG 216 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeCC
Confidence 9999999999999999999976 5899999999976 34 489999999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=340.88 Aligned_cols=217 Identities=27% Similarity=0.397 Sum_probs=179.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888877652 2459999999999999999999999999999999999876 5699999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046196 918 NQE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq 995 (1436)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+..+.++++++.+++.+..+.. +..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHH
Confidence 432 2245689999999888899999999886543211 0012233345678899999998766655 35799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999765 899999999986 57788999999986 7888888
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 74
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=314.30 Aligned_cols=207 Identities=30% Similarity=0.459 Sum_probs=175.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~~~~~l 243 (1436)
+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|+|.+||++++.+.+. +..+..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45899999999999999999999999999999999999998 99999999999887764 5679999998888889
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+|-+.+|..-.+.+. .| .++..+++..|...++.+.+.. ..
T Consensus 91 tv~eVV~mGr~p~~~g~-----------------~~---------------~e~~~i~~~ala~~d~~~la~R-----~y 133 (259)
T COG4559 91 TVQEVVQMGRIPHRSGR-----------------EP---------------EEDERIAAQALAATDLSGLAGR-----DY 133 (259)
T ss_pred EHHHHHHhcccccccCC-----------------Cc---------------hhhHHHHHHHHHHcChhhhhcc-----ch
Confidence 99999999864332111 00 0122345667777788776653 34
Q ss_pred ccCChhhhhHHHHHHHHhc------CCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 324 RGISGGQRKRLTTGEMLVG------PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~------~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
+.|||||||||.+||.|+. ++++||||||||+||......+++..|++++. +-.|+.+.|+.+-+..+||+|
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhhee
Confidence 6799999999999999975 44699999999999999999999999999874 355666889999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999999886
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=352.44 Aligned_cols=212 Identities=25% Similarity=0.377 Sum_probs=183.0
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|+||++++||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 66777776652 2459999999999999999999999999999999999877 57999999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 919 Q--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 919 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
. ...++.+||++|++.+++.+||.|++.+.+.++. .+.++..+.++++++.+||.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998776542 223344456789999999998877764 57999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||++||+||+++|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 799999999986 68889999999996 799999985
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=322.07 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=173.9
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc----ceEEEecCCCCcC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ----RTSAYISQNDLHI 240 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~~~~~ 240 (1436)
.+.++|+|||+++++||+++|+||||+||||||++|+|..++. +|+|.++|++++...+. .-++||||....|
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF 90 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIF 90 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccch
Confidence 3467999999999999999999999999999999999999987 99999999999887664 4589999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhC-Cccccccccc
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILG-LEVCADTMVG 319 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg 319 (1436)
++|||+|||..++....... . ...+ .|.+.+.+- |.+.++..-|
T Consensus 91 ~~LTVeENL~~g~~~~~~~~-----------~------~~~~------------------~e~v~~lFP~Lker~~~~aG 135 (237)
T COG0410 91 PRLTVEENLLLGAYARRDKE-----------A------QERD------------------LEEVYELFPRLKERRNQRAG 135 (237)
T ss_pred hhCcHHHHHhhhhhcccccc-----------c------cccc------------------HHHHHHHChhHHHHhcCccc
Confidence 99999999998754321000 0 0000 122333332 4444455544
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
.|||||||.++|||||+++|++|+|||||.||-|.-..+|++.++++.+. .+.+|+.+.|+...+.+++|+.+|
T Consensus 136 -----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yv 209 (237)
T COG0410 136 -----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYV 209 (237)
T ss_pred -----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEE
Confidence 49999999999999999999999999999999999999999999998753 457888899999999999999999
Q ss_pred ecCCeEEEecChhHHHH
Q 046196 400 LSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~~ 416 (1436)
|.+|+|++.|+.+++.+
T Consensus 210 le~Griv~~G~~~eL~~ 226 (237)
T COG0410 210 LENGRIVLSGTAAELLA 226 (237)
T ss_pred EeCCEEEEecCHHHHhc
Confidence 99999999999999864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=346.94 Aligned_cols=204 Identities=25% Similarity=0.303 Sum_probs=173.6
Q ss_pred CccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---c----ccceEEEeecCC
Q 046196 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---T----FARISGYCEQTD 933 (1436)
Q Consensus 861 ~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~ 933 (1436)
++.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 445679999999999999999999999999999999999987 5689999999876421 1 135699999999
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 046196 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 934 ~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ill 1013 (1436)
.+++.+||+||+.+..... .....+..+.++++++.++|.+..++. +..||||||||++||+||+.+|++|+
T Consensus 112 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred ccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998865432 122333445678899999998777765 35799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999998754 899999999976 57788999999986 788888874
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=321.76 Aligned_cols=202 Identities=24% Similarity=0.406 Sum_probs=185.7
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcH
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+.+.+++|+||.++||+++|++|+|||||||++++|.|... +++|+|.++|.++++. .+.++||.|.+.-++|.+||
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhhhccCccCcH
Confidence 56789999999999999999999999999999999999987 6799999999998754 35678999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
.|.|.|.|.++ .++.++.+...+.+|+.+++....... ++.||.|++|++.+-.+++++|++++||||+|||
T Consensus 90 ~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 90 EDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred HHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 99999999887 456677777889999999999887776 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|++ |+.|.+|+.
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 999999999999999999999999999986 68899999999996 788899986
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=361.39 Aligned_cols=217 Identities=27% Similarity=0.370 Sum_probs=183.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 367888877652 3469999999999999999999999999999999999987 5799999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. ..+++.+||++|+..+++.+||+|++.+........ .....+..+.++++++.+++.+..++. ++.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 43 345677999999999989999999998754211100 101233445689999999999887765 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
|||||+.|||+|+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999986 57789999999996 789999
Q ss_pred cCC
Q 046196 1074 GPL 1076 (1436)
Q Consensus 1074 G~~ 1076 (1436)
|+.
T Consensus 221 G~~ 223 (402)
T PRK09536 221 GPP 223 (402)
T ss_pred cCH
Confidence 985
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=334.82 Aligned_cols=195 Identities=30% Similarity=0.408 Sum_probs=167.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-ccccceEEEeecCCCCCCCCcHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
+.+|+|+||++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 459999999999999999999999999999999999876 579999999987643 23345789999999889999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD 1022 (1436)
||+.+....+. . ..+.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 91 ENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred HHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 99987654321 1 123468899999998776665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1023 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1023 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 159 PDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999998877899999999976 56678999999996 6777654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=354.26 Aligned_cols=206 Identities=24% Similarity=0.339 Sum_probs=175.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~~~~ 240 (1436)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 46999999999999999999999999999999999999998 9999999998765432 35699999999989
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++.+..+... .+....++.+++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998754332100 001123466789999987776554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 3566777899999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=335.85 Aligned_cols=221 Identities=38% Similarity=0.627 Sum_probs=180.5
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC-CceeEEEEECCccC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYVSGSITISGYPK 917 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 917 (1436)
+.|+|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.++
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4577887766311 0135699999999999999999999999999999999998751 24689999999887
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEE-VMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~-vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.....++.++|++|++.+++.+||+||+.+......+.....+.....+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544456779999999999999999999998765443222222222234455 88888888766654 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999985468899999999996 6887765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=335.33 Aligned_cols=206 Identities=28% Similarity=0.360 Sum_probs=172.9
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 46777776542 12359999999999999999999999999999999999876 56999999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 QE------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
.. .+++.++|++|++.+++.+|+.||+.+....+. ...+...+.++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAF-----PEQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 21 234679999999988899999999988754321 22333445678899999998765554 35799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 577789999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=338.76 Aligned_cols=202 Identities=25% Similarity=0.309 Sum_probs=169.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCC-----CCCceeEEEEECCccCCc-----ccccceEEEeecCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYVSGSITISGYPKNQ-----ETFARISGYCEQTD 933 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~-----~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~q~~ 933 (1436)
+.+|+|+|++|++||+++|+||||||||||+++|+|.. + +.+|+|.++|.++.. ...++.++|++|++
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 35999999999999999999999999999999999987 5 578999999987532 22456799999998
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 046196 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 934 ~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ill 1013 (1436)
.++ .+||+||+.+....+. ....++..+.++++++.+++.+..+.... +.+||||||||++||++|+.+|++|+
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~lll 164 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLL 164 (227)
T ss_pred hhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 877 7999999988654331 11122234567889999999876555320 35799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||||+|||+.++..+++.|++++++ +|||+++|+++ .+...+|++++|++ |++++.|+.
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 224 (227)
T cd03260 165 LDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPT 224 (227)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCc
Confidence 99999999999999999999999876 99999999976 56778999999996 788888875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=339.27 Aligned_cols=217 Identities=27% Similarity=0.341 Sum_probs=179.9
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. .+.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4677777655210 001269999999999999999999999999999999999987 56899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 QE------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 31 124679999999999999999999988654331 22333445678899999998776654 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999976 56778999999986 7888
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
..|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=341.84 Aligned_cols=204 Identities=29% Similarity=0.348 Sum_probs=170.4
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc------ccccceEEEeecCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ------ETFARISGYCEQTDIHSP 937 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~q~~~~~~ 937 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|+..+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 459999999999999999999999999999999999876 568999999987642 123567999999999999
Q ss_pred CCcHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 046196 938 HVTVYESLVYSAWLRL-----PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1012 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~-----~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~il 1012 (1436)
.+||+||+.+...... ......+...+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532110 00111123345678899999997766554 4579999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1013 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1013 llDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 999999999999999999999998764 899999999986 57778999999996 788888875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=339.33 Aligned_cols=214 Identities=22% Similarity=0.349 Sum_probs=179.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46777776542 2459999999999999999999999999999999999876 57999999998764
Q ss_pred c-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 919 Q-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 919 ~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
. ...++.++|++|+..+++.+||+|++.+...... ....++..+.++++++.+|+.+..+.. ++.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 2235679999999988999999999987542111 123334455678999999998766654 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 56678999999986 789998
Q ss_pred cCC
Q 046196 1074 GPL 1076 (1436)
Q Consensus 1074 G~~ 1076 (1436)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=335.60 Aligned_cols=200 Identities=28% Similarity=0.417 Sum_probs=171.4
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc--ccccceEEEeecCCCCCCCCcH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ--ETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|+..+++.+|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 459999999999999999999999999999999999876 579999999987643 2345669999999988889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
+||+.+....+. ...++..+.++++++.++|.+..++. +..||+|||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654431 22333345678899999998766665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|+.+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |+++..|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999875 599999999986 46678999999986 788888864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=334.29 Aligned_cols=193 Identities=27% Similarity=0.383 Sum_probs=165.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc------cccceEEEeecCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE------TFARISGYCEQTDIHSP 937 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~~~~~ 937 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 359999999999999999999999999999999999876 5699999999876421 23467999999999999
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 046196 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1017 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP 1017 (1436)
.+|++||+.+....+. ...++..+.++++++.+++.+..++. +..||||||||++||++|+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988754331 22333445678899999998766654 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 1018 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1018 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
|+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|++++|++|
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999998777999999999975 466789999999864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=335.05 Aligned_cols=217 Identities=25% Similarity=0.334 Sum_probs=178.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+... ...+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 47888988776310 011459999999999999999999999999999999999876 5799999999876
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 918 NQET------F-ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 918 ~~~~------~-~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
.... . ++.++|++|+..+++.+|++||+.+..... ....++.++.++++++.+++.+..+.. +..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 4311 1 256999999998899999999998865432 122334445688999999998766654 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ ..+|++++|++ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999975 34 44689999986 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..||.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9888875
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=346.56 Aligned_cols=218 Identities=22% Similarity=0.321 Sum_probs=179.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. ....+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 6788887765310 0012459999999999999999999999999999999999987 56999999998864
Q ss_pred c-----ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 046196 919 Q-----ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN--PIREALVGLPGVSG 990 (1436)
Q Consensus 919 ~-----~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~--~~~~~~~g~~~~~~ 990 (1436)
. ...++.+||++|++. .+...||+|++.|..... ..+.++..+.++++++.+||. +..++. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 134567999999863 334579999998865432 234455556788999999996 455544 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999975 46678999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999875
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=314.77 Aligned_cols=210 Identities=21% Similarity=0.363 Sum_probs=181.1
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc----ceEEEecCCCCcC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ----RTSAYISQNDLHI 240 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~~~~~ 240 (1436)
+++++++|||+.+++||+++++|||||||||...++.|+..|+ +|+|.++|.+++.+... .-+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 3456999999999999999999999999999999999999999 99999999999876553 3489999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
-.+||+|||.-..+...... ...+.+...+.+|+.++|.++++..-.
T Consensus 92 r~LtV~dNi~~vlE~~~~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr~~~a~- 138 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDL--------------------------------KKAERKEELDALLEEFHITHLRDSKAY- 138 (243)
T ss_pred hcCcHHHHHHHHHhhhhcch--------------------------------hHHHHHHHHHHHHHHhchHHHhcCccc-
Confidence 99999999987654431100 001223456789999999999986543
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
.||||||+|+.|||||+.+|+.++||||++|+||-+..+|.+.++.+.. .+.-|+..-|...|+...|||.+++
T Consensus 139 ----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 139 ----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred ----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEE
Confidence 5999999999999999999999999999999999999999999998865 4566666789999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 046196 401 SDGQIVYQGPRENVLE 416 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~~ 416 (1436)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999999864
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=332.24 Aligned_cols=200 Identities=28% Similarity=0.433 Sum_probs=167.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 45999999999999999999999999999999999999987 9999999988754322 3569999999888889999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.++....+.. .. .....++.+++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------KA------------------------EIRARVRELLELVGLEGLLNRYP-----HE 130 (213)
T ss_pred HHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 99998864321100 00 01123456788999987766555 45
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.+++|+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999997643 355666788999899999999999999999
Q ss_pred EEec
Q 046196 406 VYQG 409 (1436)
Q Consensus 406 v~~G 409 (1436)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=347.74 Aligned_cols=206 Identities=29% Similarity=0.388 Sum_probs=174.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lT 244 (1436)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 35999999999999999999999999999999999999988 999999998764322 2357999999998889999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.+..+..+... . +....++.+++.+||++..++.++
T Consensus 94 v~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------R------------------------EIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhHhcCchh-----
Confidence 9999987543221100 0 001124557889999888777664
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|++++. .+++|+.++|+..++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999864 35667778999999999999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+++++.+
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=339.52 Aligned_cols=201 Identities=28% Similarity=0.397 Sum_probs=172.0
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCc
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lT 940 (1436)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 358999999999999999999999999999999999876 568999999987542 234567899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP--IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~--~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPT 1018 (1436)
|+||+.+....+ ..+.++..+.++++++.+++.+ ..+.. ++.||||||||++||++|+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999998765432 1233344556789999999985 55544 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1019 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1019 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999764 899999999986 57788999999996 788888874
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=333.80 Aligned_cols=191 Identities=30% Similarity=0.394 Sum_probs=162.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCC-CCCCCcHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDI-HSPHVTVY 942 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-~~~~lTv~ 942 (1436)
+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.....++.++|++|++. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 459999999999999999999999999999999999876 579999999987644344567999999864 34567999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD 1022 (1436)
||+.+..... . . ..+.++++++.+++.+..++. +..||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 1 123578899999998777665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 1023 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 1023 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i 204 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAI 204 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999777999999999986 56678999999996 554
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=340.03 Aligned_cols=214 Identities=26% Similarity=0.372 Sum_probs=179.5
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67888877652 2359999999999999999999999999999999999876 56899999998754
Q ss_pred c-----------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046196 919 Q-----------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPG 987 (1436)
Q Consensus 919 ~-----------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~ 987 (1436)
. ...++.++|++|++.+++..|++||+.+...... ....+...+.++++++.+++.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1234578999999988999999999987543211 122334455678899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 4579999999999999999999999999999999999999999999999877999999999976 57788999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 788888874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=332.52 Aligned_cols=205 Identities=29% Similarity=0.379 Sum_probs=172.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lT 244 (1436)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 35999999999999999999999999999999999999987 999999998764321 1356999999998899999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.+..+..+.. . .+....++.+++.+||++..++.+ .
T Consensus 90 v~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (220)
T cd03265 90 GWENLYIHARLYGVP----------G------------------------AERRERIDELLDFVGLLEAADRLV-----K 130 (220)
T ss_pred HHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence 999999864432110 0 001123466789999987777655 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.+.+|+|++|++|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 59999999999999999999999999999999999999999999998653 25567778999999999999999999999
Q ss_pred EEEecChhHH
Q 046196 405 IVYQGPRENV 414 (1436)
Q Consensus 405 iv~~G~~~~~ 414 (1436)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987754
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=343.66 Aligned_cols=222 Identities=24% Similarity=0.352 Sum_probs=179.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-------cccceEEEecCCC-Cc
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-------VPQRTSAYISQND-LH 239 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~-~~ 239 (1436)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 4999999999999999999999999999999999999998 99999999987521 1235699999985 34
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-ccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTMV 318 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 318 (1436)
+...||.||+.|+.+..+.. . .+....++.+++.+||. +..++
T Consensus 97 l~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~-- 140 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIP----------K------------------------EKAEKIAAEKLEMVGLADEFWEK-- 140 (288)
T ss_pred cccchHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhccC--
Confidence 55579999999976433210 0 00112346678899996 34443
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
.++.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.. .+.+|++++|+..++.++||+|+
T Consensus 141 ---~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 141 ---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ---CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEE
Confidence 3457999999999999999999999999999999999999999999998754 35667778999999999999999
Q ss_pred EecCCeEEEecChhHHH---HHHHhcCCCCCCCCCHHH
Q 046196 399 LLSDGQIVYQGPRENVL---EFFERMGFKCPERKGVAD 433 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~ad 433 (1436)
+|++|+++++|+++++. +.++..|+.+|.....++
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFAD 253 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHH
Confidence 99999999999999875 345567777775444333
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=335.45 Aligned_cols=199 Identities=30% Similarity=0.425 Sum_probs=167.7
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---c-ccceEEEeecCCCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---T-FARISGYCEQTDIHSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~q~~~~~~~l 939 (1436)
+.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|+..+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 358999999999999999999999999999999999987 5689999999876431 1 245699999999999999
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV-ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l-~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPT 1018 (1436)
|++||+.+...... ..+..+.++++++.+ ++.+..++. ++.||||||||++|||+|+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999988654321 122234466777777 466555544 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1019 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1019 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+|||+.++..+++.|++++++|+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 999999999999999999877899999999976 57788999999986 788888874
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=339.21 Aligned_cols=212 Identities=26% Similarity=0.363 Sum_probs=177.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 46677766542 2458999999999999999999999999999999999876 56899999998764
Q ss_pred cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 046196 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKR 998 (1436)
Q Consensus 919 ~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqR 998 (1436)
. ..+.++|++|+..+++.+||.||+.+....+ .....+..+.++++++.+++.+..+.. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 2245799999998889999999998764432 122333445688999999998766654 45799999999
Q ss_pred HHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEec-CcEEEEEcCC
Q 046196 999 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKR-GGEEIYVGPL 1076 (1436)
Q Consensus 999 l~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-Gg~~~y~G~~ 1076 (1436)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ .+...+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 57788999999985 5888887764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=386.33 Aligned_cols=205 Identities=30% Similarity=0.413 Sum_probs=169.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+| +.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM-SG 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccC-cc
Confidence 35899999999999999999999999999999999999998 9999999999987665 46799999999866 56
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
|++|||.++.. .+.+++.++++..+.+.. .-.|+++.||.+|+.+
T Consensus 542 TI~eNi~~~~~--------------------------~~~e~i~~al~~a~l~~~--------i~~lp~G~dt~ige~G- 586 (686)
T TIGR03797 542 SIFENIAGGAP--------------------------LTLDEAWEAARMAGLAED--------IRAMPMGMHTVISEGG- 586 (686)
T ss_pred cHHHHHhcCCC--------------------------CCHHHHHHHHHHcCcHHH--------HHhccccccccccCCC-
Confidence 99999998632 111223333333222211 2247888999999875
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+||||||||++||||++++|++|+||||||+||+.++.++.+.|++. ++|+ +.++|.. ++.+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~-IiItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTR-IVIAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeE-EEEecCh-HHHHcCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999874 3444 4466654 667889999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++++++
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=323.49 Aligned_cols=207 Identities=27% Similarity=0.380 Sum_probs=180.8
Q ss_pred CccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCccc----ccceEEEeecCCCCC
Q 046196 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET----FARISGYCEQTDIHS 936 (1436)
Q Consensus 861 ~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~q~~~~~ 936 (1436)
.+...+++|||+++++||++||+||||||||||+|+|+|.++ |++|+|.++|.++.... .+.-++.-+|...+|
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 356779999999999999999999999999999999999988 57999999999875422 234577889999999
Q ss_pred CCCcHHHHHHHHHHhc--------CCCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 046196 937 PHVTVYESLVYSAWLR--------LPPE-VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVA 1007 (1436)
Q Consensus 937 ~~lTv~e~l~~~~~l~--------~~~~-~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~ 1007 (1436)
++|||.||+..++..+ .+.. ...++..+++.++++.+||.+.+|...| +||+||||||.|||||+.
T Consensus 92 ~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALAT 166 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhc
Confidence 9999999998875433 1211 1234556778899999999999999865 699999999999999999
Q ss_pred CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1008 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1008 ~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+|++|+||||.+||.+.....+.+.|+++.++ |.||+++-|+.+ -++.+||||+||+. |+++..|++
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P 234 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTP 234 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCH
Confidence 99999999999999999999999999999874 699999999997 48999999999996 799999986
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=311.97 Aligned_cols=214 Identities=27% Similarity=0.419 Sum_probs=182.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
|+.+|++|+.. ++++|++||++++|||++||+||||||||||||+|+|... +.+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 56778888763 4679999999999999999999999999999999999887 56899999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 919 Q---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPE--VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 919 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~--~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
. ..+++..+..+|+..+....||+|-+.++.. |.. ....+..+.++++|+..++.+++... ...|||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSG 138 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSG 138 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCc
Confidence 4 3456778999999988878999999998743 322 22224455678999999999887765 357999
Q ss_pred HHHHHHHHHHHHhh------CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 994 EQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 994 GqrqRl~iA~aL~~------~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
||||||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+++.||.+. ...++|+|++|.+
T Consensus 139 GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~- 216 (259)
T COG4559 139 GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ- 216 (259)
T ss_pred hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-
Confidence 99999999999976 345899999999999999999999999999999999999999984 6778999999996
Q ss_pred cEEEEEcCCC
Q 046196 1068 GEEIYVGPLG 1077 (1436)
Q Consensus 1068 g~~~y~G~~~ 1077 (1436)
|+++..|++.
T Consensus 217 Grv~a~g~p~ 226 (259)
T COG4559 217 GRVIASGSPQ 226 (259)
T ss_pred CeEeecCCHH
Confidence 7999999863
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.98 Aligned_cols=210 Identities=28% Similarity=0.381 Sum_probs=172.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 35999999999999999999999999999999999999987 9999999988754332 3569999999988889999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.++....+...+. .. .+....++.+++.+||++..++.+ ..
T Consensus 92 ~e~l~~~~~~~~~~~~~------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSERP------PE------------------------AEIRAKVHELLKLVQLDWLADRYP-----AQ 136 (239)
T ss_pred HHHHhhhhhhccccccC------CH------------------------HHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 99999865322110000 00 001123456788999987666554 46
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.+.+|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999998653 245666688888889999999999999999
Q ss_pred EEecChhHHH
Q 046196 406 VYQGPRENVL 415 (1436)
Q Consensus 406 v~~G~~~~~~ 415 (1436)
++.|+++++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=328.91 Aligned_cols=221 Identities=24% Similarity=0.358 Sum_probs=193.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~ 239 (1436)
..-++|+|++|+.||+..|||=||||||||+++|.++++|+ +|+|.++|.++..... ++.++.|+|+..+
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 45689999999999999999999999999999999999998 9999999999876553 2569999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
+|..||.||..|+.+.+|++.. +.+.+..+.|+..||+...+..
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~y-- 161 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKY-- 161 (386)
T ss_pred ccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcC--
Confidence 9999999999999999886431 1223455679999999888744
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
++.||||+||||.|||||+.+|+|||||||+|+|||--+.++.+.|.++....++ ||+.++|+.+|.+++.|||.+
T Consensus 162 ---p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K-TIvFitHDLdEAlriG~rIai 237 (386)
T COG4175 162 ---PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK-TIVFITHDLDEALRIGDRIAI 237 (386)
T ss_pred ---cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC-eEEEEecCHHHHHhccceEEE
Confidence 5679999999999999999999999999999999999999999999988776654 555689999999999999999
Q ss_pred ecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHh
Q 046196 400 LSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEV 438 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 438 (1436)
|++|+|+..|+++|++. .|...-+++|.+.+
T Consensus 238 mkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 238 MKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred ecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 99999999999999864 46666677777654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=340.39 Aligned_cols=204 Identities=27% Similarity=0.305 Sum_probs=169.7
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc------ccccceEEEeecCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ------ETFARISGYCEQTDIHSP 937 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~q~~~~~~ 937 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|+..+++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 459999999999999999999999999999999999886 569999999987542 123567999999998899
Q ss_pred CCcHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 046196 938 HVTVYESLVYSAWLRL-----PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSII 1012 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~-----~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~il 1012 (1436)
.+||+||+.+...... .......+..++++++++.+++.+..+.. +..||||||||++||++|+.+|++|
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999976421100 00011223345678899999998766654 4579999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1013 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1013 llDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++ |+++..|+.
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 230 (243)
T TIGR02315 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAP 230 (243)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCH
Confidence 999999999999999999999998764 899999999986 46788999999996 688888875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=335.23 Aligned_cols=215 Identities=26% Similarity=0.370 Sum_probs=173.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 35999999999999999999999999999999999999987 9999999998765432 2459999999998999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.++....+... .... ....+ ..+....++.+++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~------~~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA------RARRE-----------EREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc------ccccc-----------HHHHHHHHHHHHHHcCccchhhCCh----
Confidence 999999998754321000 0000 00000 0011224566889999987666554
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. .+++|+.++|+..++.+++|+|++|++
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE--RGITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999999864 345666788999999999999999999
Q ss_pred CeEEEecChhHHH
Q 046196 403 GQIVYQGPRENVL 415 (1436)
Q Consensus 403 G~iv~~G~~~~~~ 415 (1436)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=342.73 Aligned_cols=215 Identities=27% Similarity=0.368 Sum_probs=179.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ +++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 477888887652 12359999999999999999999999999999999999887 5699999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. ...++.+||++|++. .++..||.||+.|..... ..+.++..+.++++++.++|.+..+.. +..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCH
Confidence 43 223467999999863 445689999998764322 223334445678999999998777665 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999976 46688999999986 788999
Q ss_pred cCC
Q 046196 1074 GPL 1076 (1436)
Q Consensus 1074 G~~ 1076 (1436)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 875
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=341.28 Aligned_cols=215 Identities=20% Similarity=0.292 Sum_probs=180.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478899887652 2458999999999999999999999999999999999986 5689999999876
Q ss_pred Ccc------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 918 NQE------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 918 ~~~------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
... ..++.++|++|+..+++.+||.||+.+...... ..+.++..+.++++++.+++.+..+.. +..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 421 134568999999988899999999987543211 122333345678889999998776665 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999975 57788999999986 789
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 998875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=333.55 Aligned_cols=205 Identities=21% Similarity=0.372 Sum_probs=172.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 35999999999999999999999999999999999999987 9999999988754332 2459999999988999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.+.....+.. . .+....++.+++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 131 (232)
T cd03218 90 LTVEENILAVLEIRGLS----------K------------------------KEREEKLEELLEEFHITHLRKSKA---- 131 (232)
T ss_pred CcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCh----
Confidence 99999998864321100 0 001123456788999987666554
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
+.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.+ .+++++.++|+..++.+++|+|++|++
T Consensus 132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998764 355677788998899999999999999
Q ss_pred CeEEEecChhHHH
Q 046196 403 GQIVYQGPRENVL 415 (1436)
Q Consensus 403 G~iv~~G~~~~~~ 415 (1436)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999988763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=345.50 Aligned_cols=218 Identities=22% Similarity=0.309 Sum_probs=179.3
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
+.++|+++.++.. ......+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 6788888876311 0011359999999999999999999999999999999999987 46899999986531
Q ss_pred ---------------------------cccccceEEEeecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 046196 919 ---------------------------QETFARISGYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVM 970 (1436)
Q Consensus 919 ---------------------------~~~~~~~~gyv~q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl 970 (1436)
....++.+||++|++ ..+...||+|++.|..... ..+.++..+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 112356799999985 3344579999998865432 234445556789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 046196 971 ELVELN-PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049 (1436)
Q Consensus 971 ~~l~l~-~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1049 (1436)
+.+||. +..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 556654 45799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1050 PSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1050 ~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
++ .+.+.+|++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 75 57788999999986 789999985
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=342.91 Aligned_cols=218 Identities=22% Similarity=0.325 Sum_probs=175.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-------cccceEEEecCCC-C
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-------VPQRTSAYISQND-L 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~-~ 238 (1436)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 35899999999999999999999999999999999999998 99999999987531 1135699999985 2
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTM 317 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 317 (1436)
.+...||+||+.|+.+..+.. . .+....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------E------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 455679999999875432210 0 00112356788999996 445544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
++.|||||||||+||+||+.+|++|||||||+|||+.+..++.+.|+++... .+++|+.++|+..++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 -----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 4569999999999999999999999999999999999999999999998653 3566777899999999999999
Q ss_pred EEecCCeEEEecChhHHHH---HHHhcCCCCCC
Q 046196 398 ILLSDGQIVYQGPRENVLE---FFERMGFKCPE 427 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 427 (1436)
++|++|+++++|+++++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999988742 23344555443
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=345.03 Aligned_cols=218 Identities=25% Similarity=0.316 Sum_probs=179.2
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+.... ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67888888763110 012459999999999999999999999999999999999987 56899999998763
Q ss_pred c-------ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046196 919 Q-------ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVS 989 (1436)
Q Consensus 919 ~-------~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~ 989 (1436)
. ...++.+||++|++. .+...||+||+.|..... ..+.++..+.++++++.++|. +..++. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999852 233579999998875432 223444455689999999996 555554 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999975
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=332.96 Aligned_cols=205 Identities=26% Similarity=0.355 Sum_probs=172.4
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCCCcCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQNDLHIG 241 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~~~~~ 241 (1436)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999997 9999999998754321 356999999999888
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
.+||+||+.++....+.. . ......++.+++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVP----------K------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 999999998864322110 0 001123456788999987766554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
..|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+. ++++|+.++|+..++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999987653 35566668888888999999999999
Q ss_pred CCeEEEecChhHHH
Q 046196 402 DGQIVYQGPRENVL 415 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~ 415 (1436)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=343.04 Aligned_cols=218 Identities=23% Similarity=0.380 Sum_probs=177.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-----ccceEEEecCCCC-cC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-----PQRTSAYISQNDL-HI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~~~-~~ 240 (1436)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 35999999999999999999999999999999999999998 999999999886532 2357999999863 45
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc--ccccccc
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE--VCADTMV 318 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 318 (1436)
..+||+||+.|+....+.. . .+....++++++.+||+ +..|+.
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~- 141 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------E------------------------EEIENRVKRAMNIVGLDYEDYKDKS- 141 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------H------------------------HHHHHHHHHHHHHcCCCchhhccCC-
Confidence 5689999999864322110 0 01122456789999996 445543
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
++.||||||||++||+||+.+|++|||||||+|||+.++.++.+.|+++++. .+++|+.++|+..++.++||+|+
T Consensus 142 ----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 142 ----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999998653 35677778999999999999999
Q ss_pred EecCCeEEEecChhHHHH---HHHhcCCCCCC
Q 046196 399 LLSDGQIVYQGPRENVLE---FFERMGFKCPE 427 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 427 (1436)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999998753 23344555543
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=343.42 Aligned_cols=217 Identities=26% Similarity=0.352 Sum_probs=179.2
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. ....+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|+++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 6788888876310 0011359999999999999999999999999999999999987 56999999998863
Q ss_pred c-------ccccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046196 919 Q-------ETFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGV 988 (1436)
Q Consensus 919 ~-------~~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~ 988 (1436)
. ..+++.+||++|++ .++ ..||.|++.|..... ..+.++.++++.++++.++|. +..+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 12456799999986 344 469999999875432 223445566788999999996 354543 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+|++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 689999999999999999999999999999999999999999999999877999999999975 57788999999986 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
++++.|+.
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999985
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=330.34 Aligned_cols=197 Identities=35% Similarity=0.502 Sum_probs=167.5
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc--ccccceEEEeecCCCCCCCCcH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ--ETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+.+|+|+||++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|+..+++.+||
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 35999999999999 999999999999999999999876 569999999987643 2235678999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
.|++.+....+. .+.++..+.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 90 REFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988654431 22233345678899999998766654 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
|+.++..+.+.|+++++ +.|||+++|+++ .+.+.+|++++|++ |+++..|
T Consensus 162 D~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 162 DPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred CHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999876 599999999976 46678999999996 6777654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=330.41 Aligned_cols=194 Identities=23% Similarity=0.343 Sum_probs=163.1
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc------ccceEEEecCCCCcCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV------PQRTSAYISQNDLHIG 241 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~~ 241 (1436)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 5999999999999999999999999999999999999987 999999998875432 1357999999998899
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
.+||+||+.++.+..+.. . .+....++.+++.+||++..++.+
T Consensus 94 ~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 136 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVP----------P------------------------RDANERVSAALEKVGLEGKAHALP--- 136 (216)
T ss_pred cccHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 999999999875432110 0 001123456788999987766554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.+|+.++|+.+++..+||+|++|+
T Consensus 137 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 137 --MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR--RGTTVLVATHDINLVETYRHRTLTLS 212 (216)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998754 35566778899889999999999999
Q ss_pred CCeE
Q 046196 402 DGQI 405 (1436)
Q Consensus 402 ~G~i 405 (1436)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9974
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=330.71 Aligned_cols=194 Identities=27% Similarity=0.386 Sum_probs=165.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-----ccccceEEEeecCCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-----ETFARISGYCEQTDIHSPH 938 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~ 938 (1436)
+.+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|+..+++.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 458999999999999999999999999999999999986 569999999987632 2345679999999999999
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 046196 939 VTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018 (1436)
Q Consensus 939 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPT 1018 (1436)
+|++||+.+...... ....++..+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||
T Consensus 91 ~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 91 LTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999987642111 122333445678899999998766665 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 1019 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1019 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999877899999999986 567889999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=331.16 Aligned_cols=208 Identities=26% Similarity=0.331 Sum_probs=173.5
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56777776652 12358999999999999999999999999999999999986 57999999998763
Q ss_pred cc------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 QE------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
.. .+++.++|++|++.+++.+|++||+.+....+ ..+.++..+.++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 21 13567899999998888999999998865433 123333445678899999998766654 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ ++...+|++++|++ |++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999777899999999986 46678999999996 554
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=327.84 Aligned_cols=199 Identities=31% Similarity=0.429 Sum_probs=167.5
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 5899999999999999999999999999999999999987 9999999988754332 35699999999888899999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.++.+..+... .+....++.+++.+||++..+..+ +.|
T Consensus 91 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKP-----KQL 131 (213)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCCh-----hhC
Confidence 99988643321100 001123456788999987777655 459
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv 406 (1436)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|++++... +++|+.++|+..++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999986532 456666889888999999999999999999
Q ss_pred Eec
Q 046196 407 YQG 409 (1436)
Q Consensus 407 ~~G 409 (1436)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=332.91 Aligned_cols=217 Identities=24% Similarity=0.295 Sum_probs=171.3
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+... .....+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4677777655210 001258999999999999999999999999999999999876 56999999998764
Q ss_pred c------ccccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046196 919 Q------ETFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVS 989 (1436)
Q Consensus 919 ~------~~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~ 989 (1436)
. ..+++.++|++|++ .+++.+||+||+.+......+. ...+.....++++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999997 4667899999998765433211 11111122235788889985 444544 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+...+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 56678999999996 6
Q ss_pred EEEEEc
Q 046196 1069 EEIYVG 1074 (1436)
Q Consensus 1069 ~~~y~G 1074 (1436)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 776554
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=349.72 Aligned_cols=208 Identities=26% Similarity=0.376 Sum_probs=170.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++..... ++.++.++|... ++..
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~h-lF~~ 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVH-LFSG 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchH-HHHH
Confidence 36999999999999999999999999999999999999998 9999999999877765 357888999765 5667
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
|+|+||..+. |+.+.+++.++....+.++. ..+.++..||.+|+.+.
T Consensus 427 Tlr~NL~lA~-------------------------~~AsDEel~~aL~qvgL~~l--------~~~~p~gl~t~lge~G~ 473 (573)
T COG4987 427 TLRDNLRLAN-------------------------PDASDEELWAALQQVGLEKL--------LESAPDGLNTWLGEGGR 473 (573)
T ss_pred HHHHHHhhcC-------------------------CCCCHHHHHHHHHHcCHHHH--------HHhChhhhhchhccCCC
Confidence 9999999863 34444444444332222211 22355677999997654
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.||||||||++|||+|++++++++|||||.|||+.|+.++++.+.+.+ ++++++.++|+... .+.||+|++|++|
T Consensus 474 -~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~---~~kTll~vTHrL~~-le~~drIivl~~G 548 (573)
T COG4987 474 -RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA---EGKTLLMVTHRLRG-LERMDRIIVLDNG 548 (573)
T ss_pred -cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh---cCCeEEEEeccccc-HhhcCEEEEEECC
Confidence 699999999999999999999999999999999999999999998754 35556667777654 4789999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|.++++++
T Consensus 549 kiie~G~~~~Ll~ 561 (573)
T COG4987 549 KIIEEGTHAELLA 561 (573)
T ss_pred eeeecCCHHhhhc
Confidence 9999999999875
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=345.87 Aligned_cols=218 Identities=22% Similarity=0.332 Sum_probs=179.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++.. ....+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 58999999877411 0012359999999999999999999999999999999999987 5699999999775
Q ss_pred Cc-------------------ccccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 046196 918 NQ-------------------ETFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN 976 (1436)
Q Consensus 918 ~~-------------------~~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~ 976 (1436)
.. ...++.+|||+|++ .+++ .||+||+.|..... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999986 3454 59999998864321 223444455688999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 046196 977 -PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1055 (1436)
Q Consensus 977 -~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1055 (1436)
+..+.. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455543 4679999999999999999999999999999999999999999999998777999999999975 467
Q ss_pred HhhCeEEEEecCcEEEEEcCC
Q 046196 1056 DAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1056 ~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
..+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999996 799999975
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=335.86 Aligned_cols=214 Identities=26% Similarity=0.372 Sum_probs=179.5
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67778776552 2459999999999999999999999999999999999876 56899999998764
Q ss_pred cc----cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 919 QE----TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 919 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
.. ..++.++|++|++.+++.+||.||+.+...... ..+.++....++++++.+++.+..+.. ++.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 31 134569999999988899999999987643221 122334455678899999998765554 4579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||||++||++|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|+++ ++...+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999975 57788999999986 7888888
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 75
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=342.99 Aligned_cols=215 Identities=22% Similarity=0.333 Sum_probs=173.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC------------------------
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE------------------------ 223 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------------------------ 223 (1436)
++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeccccccccccccccccccccccccccc
Confidence 5899999999999999999999999999999999999998 8999999875421
Q ss_pred ---ccccceEEEecCCC-CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhH
Q 046196 224 ---FVPQRTSAYISQND-LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNV 299 (1436)
Q Consensus 224 ---~~~~~~~~yv~Q~~-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 299 (1436)
...++.+|||+|++ ..++..||+|||.|+....+... .+...
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~ 143 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAKK 143 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHHH
Confidence 01135699999985 45667899999998754322110 01112
Q ss_pred HHHHHHHHhCCc-ccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCe
Q 046196 300 VTDYVLKILGLE-VCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGT 378 (1436)
Q Consensus 300 ~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t 378 (1436)
.++.+++.+||+ +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. .++
T Consensus 144 ~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g~ 216 (305)
T PRK13651 144 RAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGK 216 (305)
T ss_pred HHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCC
Confidence 356678999996 455544 456999999999999999999999999999999999999999999999863 356
Q ss_pred EEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHH---HHHhcCCCCC
Q 046196 379 AVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE---FFERMGFKCP 426 (1436)
Q Consensus 379 ~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~---~f~~~G~~~p 426 (1436)
+|+.++|+.+++.+.+|+|++|++|+++++|+++++.+ .....|...|
T Consensus 217 tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 267 (305)
T PRK13651 217 TIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP 267 (305)
T ss_pred EEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 67778999999999999999999999999999988752 2334454444
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=343.41 Aligned_cols=205 Identities=26% Similarity=0.366 Sum_probs=176.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lT 244 (1436)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 45999999999999999999999999999999999999998 999999998875422 2357999999999999999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.|.++..+... .+....++.+++.+||++..++.++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG----- 132 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----
Confidence 9999998765432110 0011234668999999988876654
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||+||+++|++|+|||||+|||+.++..+.+.++++.. +++|+.++|..+++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK---DKTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998742 3667778999999999999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=337.16 Aligned_cols=215 Identities=23% Similarity=0.295 Sum_probs=179.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 478888887653 2459999999999999999999999999999999999986 5689999999865
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 046196 918 NQ----------------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR-E 980 (1436)
Q Consensus 918 ~~----------------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~-~ 980 (1436)
.. ..+++.++|++|++.+++.+||+||+.+...... .....+..+.+.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1235679999999999999999999987542111 122344456678999999997653 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCe
Q 046196 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDE 1060 (1436)
Q Consensus 981 ~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1060 (1436)
.. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 33 4679999999999999999999999999999999999999999999999877999999999976 56678999
Q ss_pred EEEEecCcEEEEEcCC
Q 046196 1061 LLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1061 v~~l~~Gg~~~y~G~~ 1076 (1436)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999996 788888874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=351.10 Aligned_cols=206 Identities=22% Similarity=0.320 Sum_probs=175.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~ 239 (1436)
..+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 46899999999999999999999999999999999999998 9999999998865432 2469999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.|+.+..+... .+....++++++.+||++..++.+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc-
Confidence 999999999998765432110 001123456789999987666544
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|+|++
T Consensus 163 ----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 163 ----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhCCEEEE
Confidence 569999999999999999999999999999999999999999999987643 355666689999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 046196 400 LSDGQIVYQGPRENVL 415 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~ 415 (1436)
|++|++++.|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999998874
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=341.98 Aligned_cols=215 Identities=26% Similarity=0.394 Sum_probs=180.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. +++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 588999988762 12359999999999999999999999999999999999987 5799999999886
Q ss_pred Cc-----ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 918 NQ-----ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 918 ~~-----~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
.. ..+++.+||++|++. .+...||+|++.+..... ..+.++..+.++++++.++|.+..++. ++.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 234567999999863 334689999998764322 223344455688999999998777765 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 899999999976 46678999999996 689
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999985
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=339.06 Aligned_cols=208 Identities=24% Similarity=0.331 Sum_probs=174.7
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQND 237 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~ 237 (1436)
...++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3456999999999999999999999999999999999999987 9999999988754321 24699999999
Q ss_pred CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccc
Q 046196 238 LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTM 317 (1436)
Q Consensus 238 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 317 (1436)
.+++.+||+||+.++....+... ......++.+++.+||++..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCC
Confidence 88889999999998654321100 00112345678999998777766
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
++ .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.+++|++
T Consensus 158 ~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~d~v 231 (269)
T cd03294 158 PD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLGDRI 231 (269)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEE
Confidence 54 59999999999999999999999999999999999999999999998653 3456666889988999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988774
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=330.57 Aligned_cols=193 Identities=25% Similarity=0.382 Sum_probs=163.2
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCC-CCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDI-HSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~-~~~~l 939 (1436)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|+.. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 459999999999999999999999999999999999876 569999999987642 234567899999874 46678
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs 1019 (1436)
|++||+.+..... ........+.++++++.+++.+..+.. +..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765332 122233345678899999997666654 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 1020 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1020 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999976 566779999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=336.40 Aligned_cols=206 Identities=21% Similarity=0.263 Sum_probs=175.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 588999987763 2359999999999999999999999999999999999976 5689999999765
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
. ..++.++|++|++.+++.+||+||+.+... . ...+.++++++.+++.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 235679999999988898999999987421 0 1124568899999998766654 4579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ .+...+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999976 46778999999996 688887764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=338.41 Aligned_cols=215 Identities=21% Similarity=0.338 Sum_probs=175.4
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCC-CcCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQND-LHIGEM 243 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~-~~~~~l 243 (1436)
++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 4899999999999999999999999999999999999998 9999999998754322 35699999996 367788
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+|||.|+.+..+.. . .+....++.+++.+||++..+..+
T Consensus 98 tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~----- 138 (279)
T PRK13650 98 TVEDDVAFGLENKGIP----------H------------------------EEMKERVNEALELVGMQDFKEREP----- 138 (279)
T ss_pred cHHHHHHhhHHhCCCC----------H------------------------HHHHHHHHHHHHHCCCHhHhhCCc-----
Confidence 9999999875432210 0 001123566889999987666554
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+..++ ..+|+|++|++|
T Consensus 139 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDEV-ALSDRVLVMKNG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999998653 356666678888877 589999999999
Q ss_pred eEEEecChhHHHH---HHHhcCCCCC
Q 046196 404 QIVYQGPRENVLE---FFERMGFKCP 426 (1436)
Q Consensus 404 ~iv~~G~~~~~~~---~f~~~G~~~p 426 (1436)
+++..|+++++.+ .++..|+.+|
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 217 QVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred EEEEECCHHHHHcChHHHHHcCCCCc
Confidence 9999999988753 2344455544
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=330.99 Aligned_cols=199 Identities=27% Similarity=0.420 Sum_probs=163.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCC--CCCcH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS--PHVTV 941 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~lTv 941 (1436)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 458999999999999999999999999999999999876 56999999998653 2456799999987653 34899
Q ss_pred HHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 046196 942 YESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsg 1020 (1436)
+||+.+........ ....+...+.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998754321100 011123345678899999998766654 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1021 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1021 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999998877899999999976 57788999999975 4 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=334.60 Aligned_cols=214 Identities=26% Similarity=0.335 Sum_probs=176.2
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCc---eeEEEEECCc
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---VSGSITISGY 915 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~---~~G~i~i~g~ 915 (1436)
++++|+++.+. +..+|+|+|++|++||+++|+|+||||||||+++|+|..++.+ .+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56777776552 2358999999999999999999999999999999999976321 2899999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 046196 916 PKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN----PIREALVGLP 986 (1436)
Q Consensus 916 ~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~----~~~~~~~g~~ 986 (1436)
++.. ...++.++|++|+..+++ .|++||+.+....+. ..+.++..+.++++++.+++. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 223567999999988888 999999988654331 112334445678899999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999876 489999999976 57788999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 688888874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=341.69 Aligned_cols=218 Identities=22% Similarity=0.341 Sum_probs=179.0
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++.. ....+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKG--------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCC--------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 36788888776310 0012359999999999999999999999999999999999987 5689999999876
Q ss_pred Cc-------ccccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 046196 918 NQ-------ETFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPG 987 (1436)
Q Consensus 918 ~~-------~~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~ 987 (1436)
.. ...++.+||++|++ .+++ .||.||+.|..... ..+.++..+.++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 13456799999985 3444 59999998865332 233444556788999999996 555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999975 4899999999976 46788999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 222 -G~i~~~g~~ 230 (286)
T PRK13646 222 -GSIVSQTSP 230 (286)
T ss_pred -CEEEEECCH
Confidence 789999875
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=350.47 Aligned_cols=209 Identities=26% Similarity=0.418 Sum_probs=176.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 45999999999999999999999999999999999999997 9999999998765432 35799999999888999
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++..... .+.. .. .......++.+++.+||.+..++.+
T Consensus 93 tv~e~v~~~~~~~~--~~~~---~~-------------------------~~~~~~~v~~~le~vgl~~~~~~~~----- 137 (402)
T PRK09536 93 DVRQVVEMGRTPHR--SRFD---TW-------------------------TETDRAAVERAMERTGVAQFADRPV----- 137 (402)
T ss_pred CHHHHHHhccchhc--cccc---CC-------------------------CHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999998642110 0000 00 0011234577899999988777655
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+.|||||||||.|||||+++|++|||||||+|||+.++.++.+.|+++++ . +++|+.++|+.+++.++||++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999875 3 456777889999999999999999999
Q ss_pred eEEEecChhHHH
Q 046196 404 QIVYQGPRENVL 415 (1436)
Q Consensus 404 ~iv~~G~~~~~~ 415 (1436)
++++.|++++++
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999999864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=342.77 Aligned_cols=217 Identities=20% Similarity=0.377 Sum_probs=174.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-------------------ccc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-------------------VPQ 227 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------------------~~~ 227 (1436)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35899999999999999999999999999999999999998 99999999877532 113
Q ss_pred ceEEEecCCC-CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHH
Q 046196 228 RTSAYISQND-LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLK 306 (1436)
Q Consensus 228 ~~~~yv~Q~~-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (1436)
+.++||+|++ ..+...||+||+.|+....+.. . .+....++.+++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK----------K------------------------SEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC----------H------------------------HHHHHHHHHHHH
Confidence 5699999986 2344569999999874322110 0 001123456788
Q ss_pred HhCCc-ccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 046196 307 ILGLE-VCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385 (1436)
Q Consensus 307 ~lgL~-~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q 385 (1436)
.+||+ +..+ +.+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.. .+++|++++|
T Consensus 162 ~~gL~~~~~~-----~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~--~g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLE-----RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVITH 234 (320)
T ss_pred HcCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEec
Confidence 99996 3444 33457999999999999999999999999999999999999999999998754 3566777889
Q ss_pred CchhHHHhcccEEEecCCeEEEecChhHHHH---HHHhcCCCCCC
Q 046196 386 PAPETYELFDDLILLSDGQIVYQGPRENVLE---FFERMGFKCPE 427 (1436)
Q Consensus 386 ~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 427 (1436)
+..++.++||+|++|++|++++.|+++++.+ .++..|+.+|.
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9888999999999999999999999998752 34455666554
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=326.19 Aligned_cols=198 Identities=26% Similarity=0.368 Sum_probs=166.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 35999999999999999999999999999999999999987 9999999987754 2345799999999888899999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.+..+..+... .+....++.+++.+||++..++.+ +.|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EEL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhC
Confidence 99988644322100 001123456788999987766554 469
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv 406 (1436)
||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ .+.+|+.++|+..++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR--AGKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998764 2456677889998999999999999999998
Q ss_pred Eec
Q 046196 407 YQG 409 (1436)
Q Consensus 407 ~~G 409 (1436)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=331.43 Aligned_cols=212 Identities=26% Similarity=0.401 Sum_probs=175.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 45677766542 2459999999999999999999999999999999999976 56999999998764
Q ss_pred cc--cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 919 QE--TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 919 ~~--~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.. ...+.++|++|+..+++.+|++|++.+....+ ....++..+.++++++.+++.+..++. +..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 21 22346899999988888999999998765432 122333445678899999998766654 357999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ ..+|++++|++ |+++..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999875 5899999999986 34 45999999986 68888876
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=328.73 Aligned_cols=203 Identities=25% Similarity=0.415 Sum_probs=168.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 35999999999999999999999999999999999999987 9999999988754432 3469999999988999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHh-CCcccccccccCc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL-GLEVCADTMVGDE 321 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 321 (1436)
+||+||+.++....+ . .+ ....++.+++.+ ++++..++.+
T Consensus 90 ~t~~~~l~~~~~~~~--~-----~~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~--- 130 (222)
T cd03224 90 LTVEENLLLGAYARR--R-----AK-----------------------------RKARLERVYELFPRLKERRKQLA--- 130 (222)
T ss_pred CcHHHHHHHHhhhcC--c-----hh-----------------------------HHHHHHHHHHHHHhhhhhhhCch---
Confidence 999999988643211 0 00 001223455666 4665555444
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.. .+++|+.++|+..++.+++|+|++|+
T Consensus 131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEee
Confidence 46999999999999999999999999999999999999999999999864 35666668899889999999999999
Q ss_pred CCeEEEecChhHHH
Q 046196 402 DGQIVYQGPRENVL 415 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~ 415 (1436)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987763
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=363.43 Aligned_cols=217 Identities=28% Similarity=0.433 Sum_probs=181.5
Q ss_pred CCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECC
Q 046196 835 EPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG 914 (1436)
Q Consensus 835 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 914 (1436)
-...++|+||+|.|+..+ ..++|+|+||+|+|||.+||+||||+||||+.++|-..+. |.+|+|.+||
T Consensus 462 ~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG 529 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDG 529 (716)
T ss_pred ccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECC
Confidence 345799999999997543 4579999999999999999999999999999999998887 6799999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCcccccccccCC
Q 046196 915 YPKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMF-----VEEVMELVELNPIREALVGLP 986 (1436)
Q Consensus 915 ~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~vl~~l~l~~~~~~~~g~~ 986 (1436)
.|+.+ ..+++.+|+|.|++.+|. -||+||+.|+.. +.+.++.... +.+-+ .++.+-.|+.+|..
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEK 601 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCc
Confidence 99754 457789999999999986 599999998753 2233322111 11122 35666688999866
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
| ..||||||||++|||||++||+||+|||+||.||+++...|++.|.++.+ ++|||+++|+.+ ..+.+|+|+++++
T Consensus 602 G-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 602 G-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK 677 (716)
T ss_pred c-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC
Confidence 4 47999999999999999999999999999999999999999999998765 699999999965 7888999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|..
T Consensus 678 -G~V~E~G~h 686 (716)
T KOG0058|consen 678 -GRVVEMGTH 686 (716)
T ss_pred -CeEEecccH
Confidence 799998853
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=340.83 Aligned_cols=216 Identities=25% Similarity=0.320 Sum_probs=180.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. .+.+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKE----------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCC----------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3788888877631 012358999999999999999999999999999999999987 5699999999886
Q ss_pred Cc---ccccceEEEeecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. ...++.+||++|++ ..++..||+||+.|..... ..+.++..+.++++++.++|.+..+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 23456799999986 3677889999998865332 233444556789999999998777665 357999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999976 34 57999999986 78988
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8875
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=315.68 Aligned_cols=202 Identities=26% Similarity=0.393 Sum_probs=170.7
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecCCCCCC
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQTDIHSP 937 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~ 937 (1436)
++.++|++||+++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.++... ..++-++||||....||
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 45679999999999999999999999999999999999987 4589999999997542 23456999999999999
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 046196 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV-ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l-~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDE 1016 (1436)
.+||+|||..++..+.. ........+++.+.+ .|.+.++...| .|||||||.++|||||+.+|++|+|||
T Consensus 92 ~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 92 RLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred hCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999987654422 111111256777766 35556666654 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1017 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1017 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||.||-|.-.+.|.+.|+++.++ |.||+++-+... ...+.+||.++|.+ |++++.||.
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~ 221 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTA 221 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCH
Confidence 99999999999999999999866 779999988765 47789999999996 799999985
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=339.33 Aligned_cols=203 Identities=25% Similarity=0.295 Sum_probs=170.1
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCC-cCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDL-HIGEM 243 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~-~~~~l 243 (1436)
++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4899999999999999999999999999999999999997 9999999998764322 356999999863 46678
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.|+.+..+.. . .+....++++++.+||.+..++.+
T Consensus 96 tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLD----------K------------------------DEVERRVEEALKAVRMWDFRDKPP----- 136 (274)
T ss_pred cHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHHHhcCCh-----
Confidence 9999999864322110 0 001123466789999987776555
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++. . +.+|+.++|+..++.++||+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999864 3 566777899999999999999999999
Q ss_pred eEEEecChhHH
Q 046196 404 QIVYQGPRENV 414 (1436)
Q Consensus 404 ~iv~~G~~~~~ 414 (1436)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998754
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=376.60 Aligned_cols=209 Identities=24% Similarity=0.374 Sum_probs=169.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 35899999999999999999999999999999999999998 9999999999877654 467999999988664 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
|++|||.++... +.+.+++.+++...+.+. . .-.|+++.||.+|+++
T Consensus 432 Ti~~Ni~~~~~~------------------------~~~~~~i~~al~~~~l~~------~--i~~lp~Gldt~ig~~g- 478 (582)
T PRK11176 432 TIANNIAYARTE------------------------QYSREQIEEAARMAYAMD------F--INKMDNGLDTVIGENG- 478 (582)
T ss_pred hHHHHHhcCCCC------------------------CCCHHHHHHHHHHhCcHH------H--HHhcccccCceeCCCC-
Confidence 999999986310 012223333332222211 1 1237888999999875
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
++||||||||++|||||+++|++|+||||||+||+.++..+.+.|++... ++| +|.++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~t-vI~VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRT-SLVIAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCE-EEEEecch-HHHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998632 344 44466654 677889999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999864
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=340.97 Aligned_cols=219 Identities=25% Similarity=0.323 Sum_probs=178.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~--------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPG--------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCC--------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 36778887765310 0012459999999999999999999999999999999999987 5799999999876
Q ss_pred Cc-------ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046196 918 NQ-------ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGV 988 (1436)
Q Consensus 918 ~~-------~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~ 988 (1436)
.. ...++.+||++|++. .+..+||.|++.|..... ....++..++++++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----P 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----c
Confidence 32 123457999999862 333589999998765432 223344556688999999996 566654 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999777999999999976 57789999999986 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 89998874
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=331.04 Aligned_cols=204 Identities=24% Similarity=0.339 Sum_probs=168.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc-----CCCCCcceEEEECCccCCCcc-----ccceEEEecCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL-----GKDLKFSGRVTYNGHGMEEFV-----PQRTSAYISQN 236 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 236 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 35999999999999999999999999999999999999 776 999999998875432 23569999999
Q ss_pred CCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccc
Q 046196 237 DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADT 316 (1436)
Q Consensus 237 ~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 316 (1436)
+.++ .+||+||+.++.+..+... . .+....++.+++.+||++..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL---------K------------------------EELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc---------H------------------------HHHHHHHHHHHHHcCCChHHhc
Confidence 8877 8999999988754321100 0 0011234567889999876554
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.+. +..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.++||+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCE
Confidence 420 357999999999999999999999999999999999999999999999854 3 6677788999899999999
Q ss_pred EEEecCCeEEEecChhH
Q 046196 397 LILLSDGQIVYQGPREN 413 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~ 413 (1436)
+++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=385.97 Aligned_cols=205 Identities=26% Similarity=0.361 Sum_probs=168.9
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+| +.|
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gT 568 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EGT 568 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hcc
Confidence 5899999999999999999999999999999999999998 9999999999877654 47899999999866 569
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++|||.++. |+.+.+++.+++...+.+.. +-.|+++.||.+|+.+ .
T Consensus 569 i~eNi~l~~-------------------------~~~~~~~i~~al~~~~l~~~--------i~~lp~gl~t~i~e~G-~ 614 (710)
T TIGR03796 569 VRDNLTLWD-------------------------PTIPDADLVRACKDAAIHDV--------ITSRPGGYDAELAEGG-A 614 (710)
T ss_pred HHHHhhCCC-------------------------CCCCHHHHHHHHHHhCCHHH--------HHhCcCcccceeccCC-C
Confidence 999998752 11222333333333222211 2247788899999875 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++||||++++|+||+||||||+||+.++.+|.+.|++ .++|+|+ ++|.. ++...+|+|++|++|+
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl-~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRL-STIRDCDEIIVLERGK 688 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCH-HHHHhCCEEEEEeCCE
Confidence 7999999999999999999999999999999999999999999985 2445444 66655 5667799999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++++|+++++++
T Consensus 689 i~~~G~~~~Ll~ 700 (710)
T TIGR03796 689 VVQRGTHEELWA 700 (710)
T ss_pred EEEecCHHHHHH
Confidence 999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=382.91 Aligned_cols=207 Identities=28% Similarity=0.457 Sum_probs=171.5
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.+|. .|
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~T 554 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GT 554 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hh
Confidence 4899999999999999999999999999999999999998 9999999999887654 468999999998665 69
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++|||.++. |+.+.+++.+++...+.+.. +-.|++..||.+|+.+.
T Consensus 555 I~eNi~~~~-------------------------~~~~~~~i~~a~~~~~l~~~--------i~~lp~gl~T~i~e~G~- 600 (694)
T TIGR03375 555 LRDNIALGA-------------------------PYADDEEILRAAELAGVTEF--------VRRHPDGLDMQIGERGR- 600 (694)
T ss_pred HHHHHhCCC-------------------------CCCCHHHHHHHHHHcChHHH--------HHhCcccccceecCCCC-
Confidence 999998862 12223334444333332211 22478889999998754
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++||||++++|++++||||||+||+.++..|.+.|++..+ ++|+|+ ++|.. ++...||+|++|++|+
T Consensus 601 ~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~ii-ItHrl-~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVL-VTHRT-SLLDLVDRIIVMDNGR 676 (694)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEE-EecCH-HHHHhCCEEEEEeCCE
Confidence 6999999999999999999999999999999999999999999998642 444444 66654 5678999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++++|+++++++
T Consensus 677 i~e~G~~~eLl~ 688 (694)
T TIGR03375 677 IVADGPKDQVLE 688 (694)
T ss_pred EEeeCCHHHHHH
Confidence 999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=333.22 Aligned_cols=212 Identities=22% Similarity=0.331 Sum_probs=176.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478888887652 2459999999999999999999999999999999999976 5689999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 046196 918 NQE----TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV-ELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 918 ~~~----~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l-~l~~~~~~~~g~~~~~~LS 992 (1436)
... ..++.++|++|+..+++.+||.||+.+..... ..++..+.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 432 13456999999998899999999998754221 1122233466777777 465544443 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999998877999999999976 57889999999996 78999
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=328.32 Aligned_cols=210 Identities=26% Similarity=0.344 Sum_probs=170.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4567777665210 112459999999999999999999999999999999999976 56999999998764
Q ss_pred cc---c---cc-ceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 919 QE---T---FA-RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 919 ~~---~---~~-~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
.. . ++ +.++|++|+..+++.+||+|++.+....+. ....+..+.+.++++.+++.+..+.. +..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHR-----PSEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 21 1 12 568999999988889999999988654321 12233345678899999998766654 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999998764 899999999976 34 55799999996 554
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=338.86 Aligned_cols=213 Identities=22% Similarity=0.323 Sum_probs=177.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. +++.+|+||||+|++||++||+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 45677776542 12359999999999999999999999999999999999876 57999999998764
Q ss_pred c----ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 919 Q----ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 919 ~----~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
. ...++.+||++|++. .+...|+.||+.+..... ..+.++..+.++++++.+++.+..+.. +..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCH
Confidence 2 233567999999865 466789999998765332 223344455688999999998776665 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++ ..+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 34 66999999986 789999
Q ss_pred cCC
Q 046196 1074 GPL 1076 (1436)
Q Consensus 1074 G~~ 1076 (1436)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 975
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=343.84 Aligned_cols=229 Identities=21% Similarity=0.257 Sum_probs=183.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|++..++............+...+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 57889988776421100000001123469999999999999999999999999999999999987 5689999999886
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046196 918 NQE------TFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGV 988 (1436)
Q Consensus 918 ~~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~ 988 (1436)
... .+++.++|++|++ .++|.+||.|++.+......+ ..+.++.++.++++++.++|. ...+.. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2356799999997 578899999999886543211 234455566788999999994 344443 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
.+||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 689999999999999999999999999999999999999999999999765 899999999976 46678999999986
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 799999975
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=329.96 Aligned_cols=203 Identities=29% Similarity=0.415 Sum_probs=170.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lT 244 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 45999999999999999999999999999999999999987 999999998875321 2356999999998888999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.+..+..+... . +....++.+++.+||++..++.+ .
T Consensus 92 v~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------S------------------------EIKEEVELLLRVLGLTDKANKRA-----R 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHHhChh-----h
Confidence 9999988654322100 0 00123456788999987777655 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.+ + .+++.++|+..++.+.+|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998753 3 567778898888989999999999999
Q ss_pred EEEecChhHH
Q 046196 405 IVYQGPRENV 414 (1436)
Q Consensus 405 iv~~G~~~~~ 414 (1436)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=328.51 Aligned_cols=201 Identities=28% Similarity=0.386 Sum_probs=168.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999887 9999999988753 245799999999888889999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.++....+... ......++.+++.+||++..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99988654321100 001123456788999987666554 469
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec--CCe
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS--DGQ 404 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~--~G~ 404 (1436)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+..++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999999999987543 34566668888888999999999999 799
Q ss_pred EEEecChh
Q 046196 405 IVYQGPRE 412 (1436)
Q Consensus 405 iv~~G~~~ 412 (1436)
++..++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=333.30 Aligned_cols=214 Identities=27% Similarity=0.385 Sum_probs=172.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc------ccceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV------PQRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 45999999999999999999999999999999999999887 999999998876543 135699999999888
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++..... ... ... .+..+ ......++.+++.+||++..++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~--~~~---~~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~-- 142 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--STW---RSL------FGLFP---------------KEEKQRALAALERVGLLDKAYQRA-- 142 (241)
T ss_pred ccCcHHHHHHhhhcccc--hhh---hhh------cccCc---------------HHHHHHHHHHHHHcCChhhhCCCc--
Confidence 99999999987632110 000 000 00000 001123456788999987665544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|++++.. .+++|+.++|+..++.+++|++++|
T Consensus 143 ---~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 143 ---DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998643 2456677889999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=332.80 Aligned_cols=213 Identities=26% Similarity=0.354 Sum_probs=178.0
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67788877652 2359999999999999999999999999999999999976 56899999998752
Q ss_pred ---------cccccceEEEeecCCCCCCCCcHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046196 919 ---------QETFARISGYCEQTDIHSPHVTVYESLVYS-AWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988 (1436)
Q Consensus 919 ---------~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~-~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~ 988 (1436)
....++.++|++|++.+++.+||.||+.+. .... .....+..+.+++.++.+|+.+..+.. +
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----P 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----h
Confidence 012345789999999999999999999753 2221 122233345678899999998766665 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999998777999999999986 56678999999996 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 88898874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=350.93 Aligned_cols=201 Identities=24% Similarity=0.307 Sum_probs=173.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---c----ccceEEEeecCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---T----FARISGYCEQTDIHS 936 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~~~ 936 (1436)
..+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.+||++|+..++
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 458999999999999999999999999999999999987 5699999999886431 1 134699999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 046196 937 PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016 (1436)
Q Consensus 937 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDE 1016 (1436)
+++||+||+.+....+. .+.++..+.++++++.++|.+..++. ++.||||||||++|||||+.+|++|+|||
T Consensus 119 ~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999999998765431 23344456688999999998877765 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1017 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1017 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||+.++..+++.|+++.+ .|+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 9999999999999999999875 4899999999976 57788999999996 688888864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=334.55 Aligned_cols=214 Identities=23% Similarity=0.321 Sum_probs=178.3
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35677776652 2358999999999999999999999999999999999876 56999999998763
Q ss_pred c----------------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 046196 919 Q----------------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982 (1436)
Q Consensus 919 ~----------------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~ 982 (1436)
. ...++.++|++|++.+++..|+.||+.+..... .....++..+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998753211 1123334445678899999998766654
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeE
Q 046196 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 983 ~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++...+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998765 899999999986 567789999
Q ss_pred EEEecCcEEEEEcCC
Q 046196 1062 LLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1062 ~~l~~Gg~~~y~G~~ 1076 (1436)
++|++ |+++..|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 788888874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=334.75 Aligned_cols=207 Identities=21% Similarity=0.344 Sum_probs=172.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~~~~ 240 (1436)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35899999999999999999999999999999999999987 9999999988754321 34699999998888
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++...... .... .....++.+++.+||++..++.+
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~-- 141 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPAP------------------------LLHSTVMMKLEAVGLRGAAKLMP-- 141 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCHH------------------------HHHHHHHHHHHHcCChhhhhCCh--
Confidence 899999999886321100 0000 01123456788999988777655
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++... .+++|+.++|+..++.+++|+|++|
T Consensus 142 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 142 ---SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEE
Confidence 469999999999999999999999999999999999999999999998643 3556666889999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=381.78 Aligned_cols=206 Identities=26% Similarity=0.418 Sum_probs=166.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
+++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.++ +.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF-~g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF-SG 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccc-cc
Confidence 35899999999999999999999999999999999999998 9999999999877654 46799999999865 57
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
|+||||.++.. +.+.+++.+++...+.+. . +-.|+++.||.+|+++
T Consensus 570 TIreNI~~g~~-------------------------~~~~e~i~~al~~a~l~~------~--i~~lp~GldT~ige~G- 615 (711)
T TIGR00958 570 SVRENIAYGLT-------------------------DTPDEEIMAAAKAANAHD------F--IMEFPNGYDTEVGEKG- 615 (711)
T ss_pred CHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCCHH------H--HHhCCCccCCcccCCC-
Confidence 99999998632 111222333332222211 1 1236778899999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+||||||||++||||++++|+||+||||||+||+.++..+.+ ... . ++++++.++|.. ++.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~-~~~TvIiItHrl-~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---R-ASRTVLLIAHRL-STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---c-CCCeEEEEeccH-HHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999998888 221 2 344555566765 567789999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+|+++|+++++++
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999875
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=327.44 Aligned_cols=197 Identities=24% Similarity=0.355 Sum_probs=170.4
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 458999999999999999999999999999999999876 57999999998764322 256899999998889999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
|+.+....+. .+ ...+.++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654331 11 12467889999998776665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCC
Q 046196 1024 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLG 1077 (1436)
Q Consensus 1024 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~ 1077 (1436)
.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|+..
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999877899999999986 57788999999986 7898988763
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=338.24 Aligned_cols=236 Identities=29% Similarity=0.428 Sum_probs=198.2
Q ss_pred HhcCCCCCceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecceEEEeCCeEEEEEcCC
Q 046196 110 ERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPP 189 (1436)
Q Consensus 110 ~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~ 189 (1436)
++..++.|+..+..|++++-- ...++++|+|+||.+.+|+-++|+|||
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~P--------------------------------Pg~~~pil~~isF~l~~G~~lgIIGPS 371 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAAP--------------------------------PGQKKPILKGISFALQAGEALGIIGPS 371 (580)
T ss_pred CCCCCCCCCceeeEeeeeecC--------------------------------CCCCCcceecceeEecCCceEEEECCC
Confidence 346667788889999987621 113357999999999999999999999
Q ss_pred CCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhh
Q 046196 190 SSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQ 266 (1436)
Q Consensus 190 GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 266 (1436)
|||||||.++|.|..+|. +|.|.+||.+++.+++. +.+||.||+-.+| ..||.|||. |+
T Consensus 372 gSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF-~GTIaeNIa---Rf----------- 433 (580)
T COG4618 372 GSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELF-DGTIAENIA---RF----------- 433 (580)
T ss_pred CccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceec-CCcHHHHHH---hc-----------
Confidence 999999999999999997 99999999999888764 7899999987755 569999995 22
Q ss_pred hhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCce
Q 046196 267 ELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARA 346 (1436)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~i 346 (1436)
.++.|.+.+.+|+.+++.++- ++.|++++||.||+.+. +||||||||+++|||++++|.+
T Consensus 434 -----------~~~~d~~kIieAA~lAgvHel--------Il~lP~GYdT~iG~~G~-~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 434 -----------GEEADPEKVIEAARLAGVHEL--------ILRLPQGYDTRIGEGGA-TLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred -----------cccCCHHHHHHHHHHcChHHH--------HHhCcCCccCccCCCCC-CCCchHHHHHHHHHHHcCCCcE
Confidence 234566777788777765543 56899999999998765 6999999999999999999999
Q ss_pred eEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHHHH
Q 046196 347 LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFF 418 (1436)
Q Consensus 347 llLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~~f 418 (1436)
++||||-|.||+.....+.+.+.+... .++++|+ ++ |++.+...+|+|++|++|++..+|+++|++...
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvv-ia-HRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVV-IA-HRPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEE-Ee-cCHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999998643 4555554 43 456899999999999999999999999998754
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=346.85 Aligned_cols=208 Identities=23% Similarity=0.299 Sum_probs=175.9
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc----cCCCccc-------cceEEEe
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH----GMEEFVP-------QRTSAYI 233 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~----~~~~~~~-------~~~~~yv 233 (1436)
....+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999998 999999996 3333221 1469999
Q ss_pred cCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccc
Q 046196 234 SQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVC 313 (1436)
Q Consensus 234 ~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 313 (1436)
+|+..+++.+||+||+.|+.+..+... .+....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999865432110 0111235667899999887
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh
Q 046196 314 ADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL 393 (1436)
Q Consensus 314 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 393 (1436)
.|..+ ..|||||||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.+.. +++|+.++|+..++.++
T Consensus 158 ~~~~~-----~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKP-----GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 77655 4599999999999999999999999999999999999999999999986533 56666689999999999
Q ss_pred cccEEEecCCeEEEecChhHHH
Q 046196 394 FDDLILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 394 ~D~iivL~~G~iv~~G~~~~~~ 415 (1436)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=332.16 Aligned_cols=217 Identities=25% Similarity=0.309 Sum_probs=177.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 367888877652 235899999999999999999999999999999999987632 4689999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCC
Q 046196 915 YPKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI----REALVGLPG 987 (1436)
Q Consensus 915 ~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~----~~~~~g~~~ 987 (1436)
.++.. ...++.+||++|++.+++.+||.||+.+....+.. ....++..+.++++++.+++.+. .+..
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87642 23456799999998888999999999886533211 11223344567889999998542 2332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ .+.+.+|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999999864 899999999986 56788999999986
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 221 G~i~~~g~~ 229 (250)
T PRK14247 221 GQIVEWGPT 229 (250)
T ss_pred CeEEEECCH
Confidence 788888874
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=333.20 Aligned_cols=215 Identities=22% Similarity=0.248 Sum_probs=175.5
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999987652 235899999999999999999999999999999999987642 3589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN----PIREALVGL 985 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~----~~~~~~~g~ 985 (1436)
.++.. ...++.++|++|+..+++ +||+||+.+...... ........+.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234567999999987774 899999988654321 112233345678888888874 223332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|+++ .+.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46899999999999999999999999999999999999999999999986 4799999999986 5678899999998
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 6 788888874
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=300.69 Aligned_cols=200 Identities=27% Similarity=0.398 Sum_probs=177.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
..+|+|||++|.+||.++++||||||||||||+++|..+ |..|+|.+||+++.... ...|.|+|++.++|-+||.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 349999999999999999999999999999999999987 67999999999886433 23489999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
|+.|+.+++ .+++.+|.+.+.+.+..+||.+..++. +-+||||||||+.|||||+.+|+.|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY-----IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccc-----eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999887 466788999999999999999888766 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEecC-cEEEEEcCC
Q 046196 1024 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRG-GEEIYVGPL 1076 (1436)
Q Consensus 1024 ~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G-g~~~y~G~~ 1076 (1436)
-+++.++++|-++. .+|+.++++||+.+ +..-+++++++|+.| |+++..=|+
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 99999999998876 45999999999986 455578999999964 677766665
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=329.09 Aligned_cols=205 Identities=20% Similarity=0.332 Sum_probs=171.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-----ccceEEEecCCCCcCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-----PQRTSAYISQNDLHIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~~~~~~ 241 (1436)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 35999999999999999999999999999999999999987 999999998875421 1356999999998888
Q ss_pred CCCHHHHHHhhhhh-cCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 242 EMTVRETLAFSARC-QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
.+||+||+.++... .+. .. .+....++++++.+||++..+..+
T Consensus 91 ~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-- 134 (240)
T PRK09493 91 HLTALENVMFGPLRVRGA----------SK------------------------EEAEKQARELLAKVGLAERAHHYP-- 134 (240)
T ss_pred CCcHHHHHHhHHHHhcCC----------CH------------------------HHHHHHHHHHHHHcCChHHHhcCh--
Confidence 99999999886321 110 00 001123456788999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++.. .+++++.++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 135 ---SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE--EGMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3566677889999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=334.84 Aligned_cols=217 Identities=21% Similarity=0.252 Sum_probs=178.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 477888887652 2459999999999999999999999999999999999976 5799999999876
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC----------CCC--CHHHHHHHHHHHHHHcCCcccccc
Q 046196 918 NQE---T-FARISGYCEQTDIHSPHVTVYESLVYSAWLRLP----------PEV--DSDTRKMFVEEVMELVELNPIREA 981 (1436)
Q Consensus 918 ~~~---~-~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~----------~~~--~~~~~~~~v~~vl~~l~l~~~~~~ 981 (1436)
... . .+..++|++|++.+++.+||+||+.+....... ... ...+..+.+++.++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233489999999999999999999986431110 000 112233457888999999876665
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCe
Q 046196 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDE 1060 (1436)
Q Consensus 982 ~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~ 1060 (1436)
. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|+
T Consensus 150 ~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 Q-----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 5 4579999999999999999999999999999999999999999999998775 899999999976 57788999
Q ss_pred EEEEecCcEEEEEcCC
Q 046196 1061 LLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1061 v~~l~~Gg~~~y~G~~ 1076 (1436)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999986 788888875
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=332.00 Aligned_cols=206 Identities=25% Similarity=0.385 Sum_probs=171.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 35999999999999999999999999999999999999987 9999999988754322 35689999999989899
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc--cccccccCc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV--CADTMVGDE 321 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 321 (1436)
||+||+.++.+..+.. . ......+..+++.+||++ ..++
T Consensus 91 tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~l~l~~~~~~~~----- 131 (242)
T cd03295 91 TVEENIALVPKLLKWP----------K------------------------EKIRERADELLALVGLDPAEFADR----- 131 (242)
T ss_pred cHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCCcHHHHhc-----
Confidence 9999998864332110 0 001123456788999975 4444
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.++.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.+++|+|++|+
T Consensus 132 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 34569999999999999999999999999999999999999999999998653 35667778888888999999999999
Q ss_pred CCeEEEecChhHHH
Q 046196 402 DGQIVYQGPRENVL 415 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~ 415 (1436)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999988764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=334.44 Aligned_cols=213 Identities=25% Similarity=0.359 Sum_probs=177.3
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ ++.+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 56778776652 2459999999999999999999999999999999999876 57899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046196 919 Q---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 919 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq 995 (1436)
. ...++.++|++|+..+++.+||+|++.+..... ....+...+.++++++.+++.+..++. +..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHH
Confidence 2 223456899999988888899999998754221 111222344578899999998766665 45799999
Q ss_pred HHHHHHHHHHh------hCCCcceeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 996 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 996 rqRl~iA~aL~------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++. .+...+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 66899999999976 56778999999996 6
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 88888875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=337.17 Aligned_cols=214 Identities=25% Similarity=0.367 Sum_probs=178.9
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. +++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67788877652 12348999999999999999999999999999999999877 57999999998764
Q ss_pred c---ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 919 Q---ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 919 ~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
. ...++.+||++|++. .+...||.||+.+..... ..+.+...+.++++++.+++.+..++. ++.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHH
Confidence 3 234567899999863 344689999998765322 233444455678999999998776665 4579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999986 57789999999996 689999
Q ss_pred cCC
Q 046196 1074 GPL 1076 (1436)
Q Consensus 1074 G~~ 1076 (1436)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 975
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=332.81 Aligned_cols=220 Identities=27% Similarity=0.298 Sum_probs=177.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 477888887652 235899999999999999999999999999999999997642 3589999999
Q ss_pred ccCC-----cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCC
Q 046196 915 YPKN-----QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-REALVGLPGV 988 (1436)
Q Consensus 915 ~~~~-----~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~ 988 (1436)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....++..+.++++++.+++.+. .+.. . ..+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-~~~ 147 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRL-N-DYP 147 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhh-c-cCh
Confidence 8764 123456799999999999999999999876543211 11223334457888999888532 1111 1 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+...+|++++|++ |
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 224 (253)
T PRK14267 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-G 224 (253)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999865 699999999976 57788999999986 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 225 ~i~~~~~~ 232 (253)
T PRK14267 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 89998875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=333.79 Aligned_cols=213 Identities=23% Similarity=0.328 Sum_probs=171.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc------ccceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV------PQRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999987 999999998875432 135699999999889
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++..... .... ... +.. .......++.+++.+||.+..+..+
T Consensus 92 ~~~tv~~~l~~~~~~~~--~~~~---~~~------~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 143 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYK--PTWR---SLL------GRF---------------SEEDKERALSALERVGLADKAYQRA-- 143 (243)
T ss_pred ccccHHHHHhhcccccc--cchh---hhh------ccc---------------cHHHHHHHHHHHHHcCcHhhhcCCc--
Confidence 99999999987532110 0000 000 000 0001123456788999987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.+. .+++|+.++|+..++.++||++++|
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 144 ---DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 469999999999999999999999999999999999999999999987653 3556666889998999999999999
Q ss_pred cCCeEEEecChhHH
Q 046196 401 SDGQIVYQGPRENV 414 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~ 414 (1436)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=371.76 Aligned_cols=206 Identities=26% Similarity=0.424 Sum_probs=166.9
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+| +.|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~t 429 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLF-SAT 429 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhh-ccc
Confidence 5899999999999999999999999999999999999998 9999999999887654 35799999998866 469
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++||+.++.. +.+.+++.++++..+.+. . .-. +++.||.||+++.
T Consensus 430 i~~Ni~~~~~-------------------------~~~~~~i~~al~~~~l~~------~--i~~-p~GldT~vge~g~- 474 (574)
T PRK11160 430 LRDNLLLAAP-------------------------NASDEALIEVLQQVGLEK------L--LED-DKGLNAWLGEGGR- 474 (574)
T ss_pred HHHHhhcCCC-------------------------ccCHHHHHHHHHHcCCHH------H--HcC-ccccCchhcCCCC-
Confidence 9999998632 111222222222222111 1 123 6788999998654
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.||||||||++||||++++|++|+||||||+||+.++..|.+.|++..+ ++|+|+ ++|... ....+|+|++|++|+
T Consensus 475 ~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tvii-itHr~~-~~~~~d~i~~l~~G~ 550 (574)
T PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLM-ITHRLT-GLEQFDRICVMDNGQ 550 (574)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEE-EecChh-HHHhCCEEEEEeCCe
Confidence 6999999999999999999999999999999999999999999998642 445544 566554 456799999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+++|+++
T Consensus 551 i~~~g~~~~l~~ 562 (574)
T PRK11160 551 IIEQGTHQELLA 562 (574)
T ss_pred EEEeCCHHHHHh
Confidence 999999999865
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=333.43 Aligned_cols=214 Identities=25% Similarity=0.309 Sum_probs=175.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+|++|++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588899887652 235899999999999999999999999999999999987531 3689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP----IREALVGL 985 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~ 985 (1436)
.++.. ..+++.++|++|+..+++ +|++||+.+..... ..+.++..+.++++++.+++.. ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 124567999999988877 89999998865432 1223333455788999998842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999864 799999999976 5678899999998
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 6 789998874
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=323.56 Aligned_cols=195 Identities=26% Similarity=0.400 Sum_probs=165.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-cccceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-VPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 35999999999999999999999999999999999999987 99999999877542 123569999999988989999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.+.....+. ....++.+++.+||++..++.+ +.
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKV-----KG 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhH-----hh
Confidence 9999886432110 0112355788899987766554 45
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.+ .+.+++.++|+..++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD--QGITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998764 345666688998899999999999999999
Q ss_pred EEec
Q 046196 406 VYQG 409 (1436)
Q Consensus 406 v~~G 409 (1436)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=327.10 Aligned_cols=206 Identities=26% Similarity=0.375 Sum_probs=170.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc--cceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP--QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~~~~~~~lT 244 (1436)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 35999999999999999999999999999999999999988 9999999987754322 246999999988888999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.+.....+.. . .+....++.+++.+||++..++.++
T Consensus 91 ~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------R------------------------AEARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhcCChh-----
Confidence 999998764322100 0 0001234567888999877766554
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++++. .+.++++++|+..++. .+|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecChhhHh-hCCEEEEEeCCe
Confidence 59999999999999999999999999999999999999999999998643 3456666788888775 599999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+++++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.55 Aligned_cols=201 Identities=25% Similarity=0.327 Sum_probs=166.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~ 239 (1436)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 45999999999999999999999999999999999999987 9999999998765432 2469999999888
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.++....+.. . .+....++.+++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK----------P------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 88999999999864322110 0 001123456789999987666544
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+.|||||||||+||+|++.+|++|||||||+|||+.++..+.+.|+++... ++++|+.++|+.+++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEE
Confidence 469999999999999999999999999999999999999999999987542 35566668888877665 589999
Q ss_pred ecCCeEEEecCh
Q 046196 400 LSDGQIVYQGPR 411 (1436)
Q Consensus 400 L~~G~iv~~G~~ 411 (1436)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=325.87 Aligned_cols=198 Identities=31% Similarity=0.421 Sum_probs=166.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCCH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lTV 245 (1436)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 5999999999999999999999999999999999999987 999999998875321 23579999999988888999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.+..+..+.. . .+....++.+++.+||++..+..+ +.
T Consensus 96 ~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------G------------------------DELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 99998754322110 0 001123466789999987766554 46
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. .+.+++.++|+..++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 355677788998899999999999999999
Q ss_pred EEec
Q 046196 406 VYQG 409 (1436)
Q Consensus 406 v~~G 409 (1436)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=382.65 Aligned_cols=207 Identities=28% Similarity=0.412 Sum_probs=170.0
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|++.+| +.|
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~gT 563 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF-SGS 563 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceeh-hHH
Confidence 4899999999999999999999999999999999999998 9999999999877654 46799999999866 569
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+|||.++.+ |+.+.+++.+++...+.++. +..|+.+.||.||+.+ .
T Consensus 564 I~eNi~l~~~------------------------~~~~~~~i~~a~~~a~l~~~--------i~~lp~gldt~i~e~G-~ 610 (708)
T TIGR01193 564 ILENLLLGAK------------------------ENVSQDEIWAACEIAEIKDD--------IENMPLGYQTELSEEG-S 610 (708)
T ss_pred HHHHHhccCC------------------------CCCCHHHHHHHHHHhCCHHH--------HHhcccccCcEecCCC-C
Confidence 9999998631 11222333344333332211 2247888999999865 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++||||++++|++|+||||||+||+.++..+.+.|+++ .++| +|.++|.. ++.+.+|+|++|++|+
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T-~IiitHr~-~~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKT-IIFVAHRL-SVAKQSDKIIVLDHGK 685 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCE-EEEEecch-HHHHcCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999874 2444 45466655 5678899999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++++|+++++++
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999999865
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=337.04 Aligned_cols=207 Identities=20% Similarity=0.285 Sum_probs=170.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-------ccceEEEecCCC-C
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-------PQRTSAYISQND-L 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~-~ 238 (1436)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 35999999999999999999999999999999999999998 999999999875421 235799999985 2
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTM 317 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 317 (1436)
.+...||+||+.|+....+.. . .+....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMN----------L------------------------DEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 344469999999874322110 0 00112346678899996 455544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
++.|||||||||+||+||+.+|++++|||||+|||+.++.++.+.++++... .+++|++++|+.+++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 -----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred -----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEE
Confidence 4569999999999999999999999999999999999999999999998643 4567777899999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 046196 398 ILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~~ 416 (1436)
++|++|++++.|+++++.+
T Consensus 217 ~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999988653
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=372.41 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=168.2
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|+++++||.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 4899999999999999999999999999999999999998 9999999999887654 4689999999987764 9
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++|||.++.. . +.+++.+++...+.++ .++ .|++..||.+|+.+.
T Consensus 431 i~~NI~~~~~---~-----------------------~d~~i~~a~~~~gl~~------~i~--~lp~Gldt~i~e~g~- 475 (592)
T PRK10790 431 FLANVTLGRD---I-----------------------SEEQVWQALETVQLAE------LAR--SLPDGLYTPLGEQGN- 475 (592)
T ss_pred HHHHHHhCCC---C-----------------------CHHHHHHHHHHcCcHH------HHH--hccccccccccCCCC-
Confidence 9999998631 0 1112222222222111 111 267888999998654
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++|||||+.+|+|++||||||+||+.++..|.+.|++... ++|+|+ ++|.. +....+|+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIi-vtHr~-~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVV-IAHRL-STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEE-Eecch-HHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998643 445554 55554 6677899999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+++++++
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=331.08 Aligned_cols=207 Identities=24% Similarity=0.255 Sum_probs=167.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cc-cceEEEeecCCCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TF-ARISGYCEQTDIHSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~-~~~~gyv~q~~~~~~~l 939 (1436)
+.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.++... .. +..++|++|++.+++.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 458999999999999999999999999999999999842125789999999876431 12 23489999999999999
Q ss_pred cHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 046196 940 TVYESLVYSAWLRLPP----EVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1014 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~----~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illl 1014 (1436)
|++|++.+........ ..+..+..+.++++++.+++. ...+..++ ..||||||||++||++|+.+|++|+|
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999998764322110 012223345678899999997 34454321 24999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hCeEEEEecCcEEEEEcCC
Q 046196 1015 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDA-FDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1015 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... +|++++|++ |++++.|+.
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 9999999999999999999999877899999999976 45566 799999986 788898875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=330.80 Aligned_cols=204 Identities=24% Similarity=0.370 Sum_probs=170.2
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-----------cccceEEEecCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-----------VPQRTSAYISQN 236 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----------~~~~~~~yv~Q~ 236 (1436)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5899999999999999999999999999999999999987 99999999887532 113569999999
Q ss_pred CCcCCCCCHHHHHHhhhhh-cCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc
Q 046196 237 DLHIGEMTVRETLAFSARC-QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD 315 (1436)
Q Consensus 237 ~~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 315 (1436)
+.+++.+||+||+.++... .+. . . ......++.+++.+||++..|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~-~---------~------------------------~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGE-P---------K------------------------EEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCC-C---------H------------------------HHHHHHHHHHHHHcCCcchhh
Confidence 9888899999999875321 110 0 0 001123456788899987666
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcc
Q 046196 316 TMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFD 395 (1436)
Q Consensus 316 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 395 (1436)
+.+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. .+.+|+.++|+..++.+++|
T Consensus 140 ~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 140 SYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ--EKRTMVIVTHEMSFARDVAD 212 (250)
T ss_pred CCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcC
Confidence 544 46999999999999999999999999999999999999999999998764 24566668899999999999
Q ss_pred cEEEecCCeEEEecChhHHH
Q 046196 396 DLILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 396 ~iivL~~G~iv~~G~~~~~~ 415 (1436)
+|++|++|++++.|+.+++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=330.81 Aligned_cols=215 Identities=24% Similarity=0.327 Sum_probs=177.1
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ ++.+|+|+||++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 56777776542 2358999999999999999999999999999999999876 56899999998764
Q ss_pred cc----cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 919 QE----TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP--P---EVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 919 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~--~---~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.. ..++.++|++|++.+++.+||+||+.+....... . ....++..+.++++++.+++.+..+.. ++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AG 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hh
Confidence 21 1234699999999999999999999876432100 0 011223345678999999998766654 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999876 789999999976 57778999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 8888874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=336.08 Aligned_cols=213 Identities=24% Similarity=0.351 Sum_probs=176.1
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 46777776552 2459999999999999999999999999999999999887 56999999998763
Q ss_pred c-----ccccceEEEeecCCCC-CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 Q-----ETFARISGYCEQTDIH-SPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~-----~~~~~~~gyv~q~~~~-~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
. ...++.++|++|++.. +...|+.||+.+..... ....++..+.++++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1234679999998653 34568999998764332 122333445678899999998776654 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999998877899999999976 56788999999996 78888
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 8874
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=374.85 Aligned_cols=134 Identities=21% Similarity=0.250 Sum_probs=106.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 046196 935 HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-REALVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1010 (1436)
Q Consensus 935 ~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~LSgGqrqRl~iA~aL~---~~p~ 1010 (1436)
.+...||.|+|.++..-......+.++..+.+ ++++.+||.+. .+.. ...||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44578999999876542211111223334445 47888999765 4554 3579999999999999998 6999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 046196 1011 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-----RGGEEIYVGPL 1076 (1436)
Q Consensus 1011 illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~y~G~~ 1076 (1436)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|++++|. .||+++..|+.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 99999999999999999999999999888999999999976 34 8999999996 36899999975
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=324.73 Aligned_cols=194 Identities=26% Similarity=0.343 Sum_probs=163.5
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-cccceEEEeecCCCCCCCCcHHHHHHH
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-TFARISGYCEQTDIHSPHVTVYESLVY 947 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~ 947 (1436)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+..+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999986 5689999999876431 234679999999999999999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHH
Q 046196 948 SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027 (1436)
Q Consensus 948 ~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~ 1027 (1436)
....+.. . .+...+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGLK--L-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred ccccccC--c-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 5432111 1 122344578999999998776665 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1028 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1028 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
.+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999998754 899999999976 56778999999996 6776543
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=340.02 Aligned_cols=208 Identities=23% Similarity=0.254 Sum_probs=173.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCC--C
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQND--L 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~--~ 238 (1436)
.++|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+... ++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999987 9999999998865432 35799999997 5
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTM 317 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 317 (1436)
+++.+||.||+.+..+..... ..+ .+....++.+++.+||+ +..+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~--------~~~------------------------~~~~~~~~~~l~~vgl~~~~~~-- 156 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPK--------LSR------------------------QEVKDRVKAMMLKVGLLPNLIN-- 156 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccC--------CCH------------------------HHHHHHHHHHHHHcCCChHHhc--
Confidence 788999999998865322100 000 01112345678999994 3344
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
+.++.|||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 157 ---~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 157 ---RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 445679999999999999999999999999999999999999999999998653 3567777999999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=336.06 Aligned_cols=215 Identities=27% Similarity=0.317 Sum_probs=180.0
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3788888876521 12359999999999999999999999999999999999987 5699999999886
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCH
Confidence 43 234567999999973 667789999998765432 223344456689999999998877765 357999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ ..+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999876 899999999976 34 46999999986 78999
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9975
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=340.28 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=175.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-------ceEEEecCCC--
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-------RTSAYISQND-- 237 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~~-- 237 (1436)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++.....+ +.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 4699999999999999999999999999999999999987423489999999988654321 3699999997
Q ss_pred CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccc
Q 046196 238 LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTM 317 (1436)
Q Consensus 238 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 317 (1436)
.+.+.+||.+++.+....... ... .+....+..+|+.+||++..++
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~---------~~~------------------------~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG---------MSK------------------------AEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CCH------------------------HHHHHHHHHHHHHcCCCChHHH-
Confidence 678899999999865432110 000 0111234567889999764332
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
+ ++.++.|||||||||+||+||+.+|++||+||||+|||..++.++.+.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 2 3567789999999999999999999999999999999999999999999998653 3567777999999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 046196 398 ILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~~ 416 (1436)
++|++|+|++.|+.+++.+
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=317.61 Aligned_cols=202 Identities=18% Similarity=0.299 Sum_probs=155.7
Q ss_pred CCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECC
Q 046196 835 EPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG 914 (1436)
Q Consensus 835 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 914 (1436)
.|+.+-++|++|.++ +.++++++++|-|.--..+||+||||.||||||++|.|.+. |..|+.+-|-
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKnh 648 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKNH 648 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhccc
Confidence 455678888888763 45679999999999999999999999999999999999887 4577764331
Q ss_pred ccCCcccccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 915 YPKNQETFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 915 ~~~~~~~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
+-.+|+..|+. .+...-|.-|.|.-.. +.+.++ +...+-.+||...++++- +..||
T Consensus 649 --------rL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq~----ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 649 --------RLRIGWFDQHANEALNGEETPVEYLQRKF------NLPYQE----ARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred --------eeeeechhhhhHHhhccccCHHHHHHHhc------CCChHH----HHHHhhhhhhhhccceEe----eeecC
Confidence 23478877753 3445667777775321 222222 356788899998888863 56899
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
||||-||++|..-++.|+||+|||||++||.++...+-+.|++. ...||+++||-+. +.+.-..++|+.+.|.--.
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999999887 4579999999763 5555567777776554444
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|..
T Consensus 783 dGdF 786 (807)
T KOG0066|consen 783 DGDF 786 (807)
T ss_pred cccH
Confidence 4443
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=297.31 Aligned_cols=205 Identities=27% Similarity=0.384 Sum_probs=178.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
..+|+|+|+.|.+||.++++||||||||||||+++|+.+|. .|+|.+||.+++. |....|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHH
Confidence 45899999999999999999999999999999999999998 9999999998864 334569999999999999999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||++|+.+..|+++.. ...++.+++...||++..+. ++-.|
T Consensus 93 dNvafgL~l~Gi~k~~----------------------------------R~~~a~q~l~~VgL~~~~~~-----~i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKAQ----------------------------------RREIAHQMLALVGLEGAEHK-----YIWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHHH----------------------------------HHHHHHHHHHHhCccccccc-----ceEee
Confidence 9999999988865321 12345678899999987664 44579
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec--CCe
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS--DGQ 404 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~--~G~ 404 (1436)
||||||||.|||||..+|+.|+||||+++||.-|++++.+.|-++.+.. +..++.++|+.+|..-++++++||+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~t-gk~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET-GKQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHh-CCeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 9999999999999999999999999999999999999999999887654 5566668999999999999999998 689
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
|+..=+++--..
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998877764443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=333.58 Aligned_cols=216 Identities=25% Similarity=0.355 Sum_probs=178.1
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 56778776552 2459999999999999999999999999999999999876 56899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 919 Q---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 919 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
. ...++.++|++|+..+++.+|+.|++.+....... .....+...+.++++++.+++.+..++. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23345689999998888889999999875211000 0111122344578899999998766665 4579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777899999999986 57889999999986 6888888
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 221 ~~ 222 (255)
T PRK11231 221 TP 222 (255)
T ss_pred CH
Confidence 75
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=333.40 Aligned_cols=216 Identities=26% Similarity=0.386 Sum_probs=175.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCC-cCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDL-HIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~-~~~~ 242 (1436)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 34899999999999999999999999999999999999998 9999999998765332 356999999973 6778
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
.||+||+.++.+..+.. . .+....++++++.+||++..++.+
T Consensus 97 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~---- 138 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------R------------------------EEMVERVDQALRQVGMEDFLNREP---- 138 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCc----
Confidence 89999999864332110 0 001123567889999987777655
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++.. .+++|++++|+..++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 139 -HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998653 3566666788887775 5999999999
Q ss_pred CeEEEecChhHHHH---HHHhcCCCCC
Q 046196 403 GQIVYQGPRENVLE---FFERMGFKCP 426 (1436)
Q Consensus 403 G~iv~~G~~~~~~~---~f~~~G~~~p 426 (1436)
|++++.|+.+++.. .+...|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999988753 3444455444
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=327.50 Aligned_cols=195 Identities=26% Similarity=0.377 Sum_probs=161.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~ 239 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999987 9999999998765331 3469999999988
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.++....+.. . ......++.+++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVP----------K------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 99999999999875432210 0 001123456788999987666554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++. .||++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHh-hhcEEEE
Confidence 469999999999999999999999999999999999999999999998642 2456666788887775 9999999
Q ss_pred ecCCeE
Q 046196 400 LSDGQI 405 (1436)
Q Consensus 400 L~~G~i 405 (1436)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=362.98 Aligned_cols=123 Identities=25% Similarity=0.323 Sum_probs=102.1
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---Ccce
Q 046196 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-REALVGLPGVSGLSTEQRKRLTIAVELVANP---SIIF 1013 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p---~ill 1013 (1436)
++||.|++.|...+. . .....+.++.+||... .+.. ...||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988865432 1 1123678899999753 3443 3579999999999999999999 9999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-----RGGEEIYVGPL 1076 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~y~G~~ 1076 (1436)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ....+|+++.|. +||++++.|+.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 446899999994 47899999975
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=323.58 Aligned_cols=192 Identities=28% Similarity=0.364 Sum_probs=161.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCC-cCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDL-HIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~-~~~~lTV 245 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .++.+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 45999999999999999999999999999999999999988 9999999988754333457999999963 3557899
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.++....+ . ....++.+++.+||++..++.+ ..
T Consensus 90 ~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (205)
T cd03226 90 REELLLGLKELD--A------------------------------------GNEQAETVLKDLDLYALKERHP-----LS 126 (205)
T ss_pred HHHHhhhhhhcC--c------------------------------------cHHHHHHHHHHcCCchhcCCCc-----hh
Confidence 999987542110 0 0012456788999987776555 46
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+.+++.++|+..++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA--QGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 355666688988899999999999999997
Q ss_pred E
Q 046196 406 V 406 (1436)
Q Consensus 406 v 406 (1436)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=330.13 Aligned_cols=221 Identities=25% Similarity=0.330 Sum_probs=176.3
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC---CCceeEEEEE
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYVSGSITI 912 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i 912 (1436)
|..++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34688999987763 2358999999999999999999999999999999999753 1136899999
Q ss_pred CCccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046196 913 SGYPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPG 987 (1436)
Q Consensus 913 ~g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~ 987 (1436)
+|.++.. ...++.++|++|+..+++ .||+||+.+....+.. ...+...+.++++++.+++.+....... ..
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ES 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CC
Confidence 9987642 123567999999988887 5999999886543211 1222334567888999988542111111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~- 223 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM- 223 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999999854 799999999976 56788999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 224 G~i~~~g~~ 232 (253)
T PRK14242 224 GKLIEVGPT 232 (253)
T ss_pred CEEEEeCCH
Confidence 688888864
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=327.50 Aligned_cols=198 Identities=25% Similarity=0.380 Sum_probs=166.9
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHH
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLV 946 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~ 946 (1436)
|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999986 57999999998764322 12489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHH
Q 046196 947 YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026 (1436)
Q Consensus 947 ~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~ 1026 (1436)
+......+ ..+.++..+.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 76321111 223334455678899999998766655 457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1027 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1027 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 57788999999996 688877754
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=322.69 Aligned_cols=196 Identities=29% Similarity=0.408 Sum_probs=165.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCCH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lTV 245 (1436)
++|+|+|+++++| +++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 5999999999999 99999999999999999999999998 999999998875432 23569999999988999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.+.....+.. + .+....++.+++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (211)
T cd03264 90 REFLDYIAWLKGIP----------S------------------------KEVKARVDEVLELVNLGDRAKKKI-----GS 130 (211)
T ss_pred HHHHHHHHHHhCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHhCch-----hh
Confidence 99998864432110 0 001123456788999987777655 45
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+||+|++.+|++++|||||+|||+.+..++.+.|++++. + ++++.++|+..++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 5677788999889899999999999999
Q ss_pred EEec
Q 046196 406 VYQG 409 (1436)
Q Consensus 406 v~~G 409 (1436)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=319.26 Aligned_cols=196 Identities=31% Similarity=0.581 Sum_probs=163.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC-ceeEEEEECCcc
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YVSGSITISGYP 916 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 916 (1436)
.++|+|++|.++.+ .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999988532 13456999999999999999999999999999999999987633 579999999987
Q ss_pred CCc--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 917 KNQ--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 917 ~~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
+.. ...++.++|++|++.+++.+||+|++.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999998653211 1222 3579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 677777766643467889999999996 677765
Q ss_pred c
Q 046196 1074 G 1074 (1436)
Q Consensus 1074 G 1074 (1436)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=322.10 Aligned_cols=233 Identities=24% Similarity=0.304 Sum_probs=188.0
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-C-CCCcceEEEECCccCCCccc-------cceEEEecCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG-K-DLKFSGRVTYNGHGMEEFVP-------QRTSAYISQN 236 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 236 (1436)
..++++||||++++||+++|+|.|||||||+.++|+|+++ + ....+|+|.++|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 33468999999998755442 2479999999
Q ss_pred --CCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccc
Q 046196 237 --DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCA 314 (1436)
Q Consensus 237 --~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 314 (1436)
..+-|.+||.+.+.-..+..... . ..++....+.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~---------~-----------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKG---------L-----------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcc---------h-----------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 46788889988886544321100 0 0111233456689999998643
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhc
Q 046196 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF 394 (1436)
Q Consensus 315 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 394 (1436)
. +-+.++..|||||||||.||.||+.+|++||.||||++||..+..+|++.|+++.+ ..+++++.|+|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 2 33678899999999999999999999999999999999999999999999999987 45788888999999999999
Q ss_pred ccEEEecCCeEEEecChhHHHHHHHhcCCCCCCCCCHHHHHHHhcCc
Q 046196 395 DDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSR 441 (1436)
Q Consensus 395 D~iivL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~ 441 (1436)
|+|+||..|+||+.|+.+++. .-|.+.-....+..+.+.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~--------~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF--------KNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh--------cCCCChHHHHHHHhCccc
Confidence 999999999999999999874 456555555555554433
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=335.76 Aligned_cols=217 Identities=24% Similarity=0.332 Sum_probs=175.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. ....+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~--------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAG--------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCC--------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 6788887765310 0011359999999999999999999999999999999999876 57999999998764
Q ss_pred c-------ccccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 046196 919 Q-------ETFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGV 988 (1436)
Q Consensus 919 ~-------~~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~ 988 (1436)
. ...++.++|++|+. .+++ .||+||+.+..... ..+.++..+.++++++.+++.+ ..+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 22456789999986 3444 69999998764332 1223334456788999999963 44443 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877899999999976 56778999999996 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 88888874
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=399.11 Aligned_cols=213 Identities=22% Similarity=0.351 Sum_probs=174.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC---------------------------------------
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--------------------------------------- 207 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--------------------------------------- 207 (1436)
.++|+|+|++|+||+.+||+||||||||||+++|+|+++|+
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999982
Q ss_pred ------------CCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHH
Q 046196 208 ------------LKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRRE 272 (1436)
Q Consensus 208 ------------~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 272 (1436)
...+|+|++||+++++... ++.++||+|++.+| +.||+|||.++.
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~------------------- 1320 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGK------------------- 1320 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCC-------------------
Confidence 0138999999999987664 46799999999865 679999999973
Q ss_pred HHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCC
Q 046196 273 KAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEI 352 (1436)
Q Consensus 273 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEp 352 (1436)
|+.+.+++.+|++.++.+.. +..|++++||.||+++. .||||||||++|||||+++|+|||||||
T Consensus 1321 ------~~at~eeI~~A~k~A~l~~f--------I~~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1321 ------EDATREDVKRACKFAAIDEF--------IESLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred ------CCCCHHHHHHHHHHcCCHHH--------HHhCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 22233445555555444332 23589999999997665 5999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC----CeEE-EecChhHHHH
Q 046196 353 STGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD----GQIV-YQGPRENVLE 416 (1436)
Q Consensus 353 tsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~----G~iv-~~G~~~~~~~ 416 (1436)
||+||+.++..|.+.|++.....++|+|+ +.|.. ++.+.||+|++|++ |+++ ++|+++|+++
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~~~~~TvIi-IaHRl-sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKDKADKTIIT-IAHRI-ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhccCCCEEEE-EechH-HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999999999999864212445444 56654 67788999999999 9955 8999999864
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=334.09 Aligned_cols=217 Identities=21% Similarity=0.293 Sum_probs=179.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 578889887763 2359999999999999999999999999999999999976 5689999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. ...++.++|++|+..+++..|++|++.+......+. ....+...+.++++++.+++.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 223456899999998888999999998642111000 001123345678899999998766654 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57889999999986 78889
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 225 ~g~~ 228 (265)
T PRK10253 225 QGAP 228 (265)
T ss_pred eCCH
Confidence 9875
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=327.41 Aligned_cols=206 Identities=21% Similarity=0.366 Sum_probs=171.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 35999999999999999999999999999999999999987 9999999988754332 3569999999988888
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.+..+.... ... .+....++.+++.+||++..+..
T Consensus 93 ~tv~enl~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 134 (241)
T PRK10895 93 LSVYDNLMAVLQIRDD---------LSA------------------------EQREDRANELMEEFHIEHLRDSM----- 134 (241)
T ss_pred CcHHHHHhhhhhcccc---------cCH------------------------HHHHHHHHHHHHHcCCHHHhhcc-----
Confidence 9999999876432100 000 00112345678889998665544
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
.+.|||||||||+||+|++.+|++|+|||||+|||+.+...+.+.++++.. .+.+++.++|+..++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 456999999999999999999999999999999999999999999998754 345666688888899999999999999
Q ss_pred CeEEEecChhHHH
Q 046196 403 GQIVYQGPRENVL 415 (1436)
Q Consensus 403 G~iv~~G~~~~~~ 415 (1436)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=332.83 Aligned_cols=219 Identities=27% Similarity=0.362 Sum_probs=179.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC-ceeEEEEECCcc
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YVSGSITISGYP 916 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 916 (1436)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 477888877652 245999999999999999999999999999999999987643 236999999987
Q ss_pred CCc--------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCcccccccc
Q 046196 917 KNQ--------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP-----EVDSDTRKMFVEEVMELVELNPIREALV 983 (1436)
Q Consensus 917 ~~~--------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~-----~~~~~~~~~~v~~vl~~l~l~~~~~~~~ 983 (1436)
+.. ...++.++|++|+..+++.+||+||+.+......+. ....++....++++++.+++.+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~- 149 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR- 149 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-
Confidence 532 123456899999999899999999998753211000 011123345678999999998766665
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEE
Q 046196 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELL 1062 (1436)
Q Consensus 984 g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~ 1062 (1436)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+...+|+++
T Consensus 150 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 150 ----VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred ----ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999999754 899999999986 4778899999
Q ss_pred EEecCcEEEEEcCC
Q 046196 1063 LMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1063 ~l~~Gg~~~y~G~~ 1076 (1436)
+|++ |++++.|+.
T Consensus 225 ~l~~-g~i~~~g~~ 237 (262)
T PRK09984 225 ALRQ-GHVFYDGSS 237 (262)
T ss_pred EEEC-CEEEEeCCH
Confidence 9996 688888875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.06 Aligned_cols=213 Identities=24% Similarity=0.367 Sum_probs=174.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++.. .....+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 47889988765310 001248999999999999999999999999999999999976 5699999999876
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 918 NQET------F-ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 918 ~~~~------~-~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
.... . ++.++|++|+..+++.+|+.||+.+....+ .....+..+.++++++.+++.+..+.. +..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhh
Confidence 4311 1 246999999998889999999998765432 122334455688999999998766654 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999976 34 56999999986 56
Q ss_pred EEE
Q 046196 1070 EIY 1072 (1436)
Q Consensus 1070 ~~y 1072 (1436)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 653
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=330.79 Aligned_cols=217 Identities=21% Similarity=0.265 Sum_probs=177.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 367888887652 235899999999999999999999999999999999987632 2699999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP----IREALVGL 985 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~ 985 (1436)
.++.. ...++.++|++|+..+++.+||+||+.+....+. ....++..+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87631 2345679999999989999999999987654321 1123334456788899998842 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 468999999999999999999999999999999999999999999999864 689999999976 5778899999997
Q ss_pred c-----CcEEEEEcCC
Q 046196 1066 R-----GGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~-----Gg~~~y~G~~ 1076 (1436)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 2 4799999875
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.25 Aligned_cols=215 Identities=23% Similarity=0.317 Sum_probs=179.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 5788998876521 12458999999999999999999999999999999999987 5689999999886
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. ..+++.++|++|++. .++.+||+||+.+..... ....++....++++++.+++.+..++. ++.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCH
Confidence 43 234567999999964 567899999998764322 123334455678999999998777665 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++. + ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 5899999999863 4 47999999986 78888
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=333.40 Aligned_cols=217 Identities=27% Similarity=0.371 Sum_probs=178.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478888887652 2359999999999999999999999999999999999876 5689999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. ..+++.++|++|+..+++.+|+.||+.+....... .........+.++++++.+++.+..+.. +..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCH
Confidence 32 23456799999998888899999999875321100 0011122344578899999998766655 357999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999986 57788999999986 78888
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 8875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=327.36 Aligned_cols=198 Identities=27% Similarity=0.331 Sum_probs=165.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecCCCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQTDIHSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~~l 939 (1436)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+..+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 459999999999999999999999999999999999987 5799999999876421 1245689999999999999
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE-LNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~-l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPT 1018 (1436)
|+.|++.+....+. .. ..+..+++++.++ +.+..+.. ++.||||||||++||++|+.+|++++|||||
T Consensus 91 tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 91 TVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred cHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 99999987654321 11 1223567777776 45444544 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1019 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1019 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~ 216 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAG 216 (230)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999998764 899999999976 56678999999986 788898875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.71 Aligned_cols=220 Identities=22% Similarity=0.272 Sum_probs=178.5
Q ss_pred CCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC--C-CceeEE
Q 046196 833 PFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYVSGS 909 (1436)
Q Consensus 833 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~--~-~~~~G~ 909 (1436)
|.+...++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ + .+.+|+
T Consensus 8 ~~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~ 74 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE 74 (260)
T ss_pred cCCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE
Confidence 33455688999987763 2358999999999999999999999999999999999864 2 146899
Q ss_pred EEECCccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccc
Q 046196 910 ITISGYPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP----IRE 980 (1436)
Q Consensus 910 i~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~----~~~ 980 (1436)
|.++|.++.. ..+++.++|++|+..+++ .|++||+.+...... ..+.++..+.++++++.+++.+ ..+
T Consensus 75 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 75 ILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred EEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHh
Confidence 9999987632 234567999999988777 899999987653221 1223333456788999998843 223
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCe
Q 046196 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDE 1060 (1436)
Q Consensus 981 ~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1060 (1436)
.. +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||++. ++.+.+|+
T Consensus 152 ~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 152 QS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred cC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 22 46799999999999999999999999999999999999999999999986 4789999999976 56778999
Q ss_pred EEEEecCcEEEEEcCC
Q 046196 1061 LLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1061 v~~l~~Gg~~~y~G~~ 1076 (1436)
+++|++ |+++..|+.
T Consensus 225 i~~l~~-G~i~~~g~~ 239 (260)
T PRK10744 225 TAFMYL-GELIEFGNT 239 (260)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999996 788888874
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=321.38 Aligned_cols=173 Identities=25% Similarity=0.313 Sum_probs=138.3
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHH
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLV 946 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~ 946 (1436)
|.-=.++|..||+++++||||-||||+.++|+|..+ |++|+ .. .-.++|=||--.-..+.||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 333457888999999999999999999999999987 46776 11 124688888766667889999876
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHH
Q 046196 947 YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026 (1436)
Q Consensus 947 ~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~ 1026 (1436)
-...-+... ..+..++++-|.|..+.+..+ .+|||||.|||+||.+|.+++++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 433221111 123468888999998888764 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 1027 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1027 ~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
..+-+.||+... +++|.+++-||.-+ +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999875 47899999999653 334678888886
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=344.29 Aligned_cols=203 Identities=22% Similarity=0.298 Sum_probs=175.2
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc----CCc---cc---c-cceEEEee
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP----KNQ---ET---F-ARISGYCE 930 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~----~~~---~~---~-~~~~gyv~ 930 (1436)
+...+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+ +.. .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34568999999999999999999999999999999999987 579999999962 211 11 1 24699999
Q ss_pred cCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 046196 931 QTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS 1010 (1436)
Q Consensus 931 q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ 1010 (1436)
|+..++|.+||+||+.|....+ ..+..++.+.++++++.+||.+..+.. +..||||||||++|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876443 233455566789999999998877765 35799999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1011 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1011 illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999765 899999999986 57789999999996 789999975
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=332.07 Aligned_cols=223 Identities=23% Similarity=0.312 Sum_probs=178.0
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.....+ ..+++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67788877653110000 0113469999999999999999999999999999999999987 57999999998764
Q ss_pred cc------cccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046196 919 QE------TFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVS 989 (1436)
Q Consensus 919 ~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~ 989 (1436)
.. ..++.++|++|++ .+.+.+||+|++.+..... .....+...+.++++++.+++. ...+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1345799999986 4667899999997654321 1122233445678999999995 555554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999976 56678999999985 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 89998875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=333.92 Aligned_cols=214 Identities=28% Similarity=0.358 Sum_probs=177.4
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56777776652 12358999999999999999999999999999999999886 56899999998763
Q ss_pred c-----ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 Q-----ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~-----~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
. ...++.++|++|+.. .+...||.|++.+..... ....++..+.+.++++.++|.+..++. ++.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCC
Confidence 1 123567999999863 334579999998764321 123344455678899999998877765 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999976 56778999999996 78888
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=328.58 Aligned_cols=219 Identities=23% Similarity=0.306 Sum_probs=174.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCC---CCCceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 914 (1436)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 467888877652 235899999999999999999999999999999999962 3212489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ...++.++|++|++.+++ .|+.||+.+....+.. ...+...+.++++++.+++.+..+.... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 233567999999988776 6999999876543311 1122234557889999998642211111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999985 4799999999986 57788999999986 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999975
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=316.82 Aligned_cols=190 Identities=55% Similarity=0.942 Sum_probs=161.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++.. ..++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 46788888776311 012458999999999999999999999999999999999753235799999999876
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 5 33456799999999889999999999864311 0 49999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++.++...+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887789999999998644678899999998657888865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=327.72 Aligned_cols=201 Identities=27% Similarity=0.381 Sum_probs=167.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ...++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999999988 99999999887542 24589999999888889999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.++....+.. . .+....++.+++.+||++..++.+ ..|
T Consensus 89 e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------K------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----WQL 129 (255)
T ss_pred HHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 9998864322110 0 001123456788999987666544 469
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec--CCe
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS--DGQ 404 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~--~G~ 404 (1436)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++... .+++|+.++|+..++.++||+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999987543 35566668899999999999999998 599
Q ss_pred EEEecChh
Q 046196 405 IVYQGPRE 412 (1436)
Q Consensus 405 iv~~G~~~ 412 (1436)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988654
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=326.23 Aligned_cols=201 Identities=30% Similarity=0.420 Sum_probs=168.6
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc--ccccceEEEee-cCCCCCCC
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ--ETFARISGYCE-QTDIHSPH 938 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-q~~~~~~~ 938 (1436)
+.+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++ |.+.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34569999999999999999999999999999999999876 569999999986432 23456789997 55677789
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 046196 939 VTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018 (1436)
Q Consensus 939 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPT 1018 (1436)
+|++|++.+....+ ....++..+.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998765433 122333445678899999998777765 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1019 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1019 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 56788999999986 6777654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.66 Aligned_cols=201 Identities=29% Similarity=0.408 Sum_probs=171.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-cccceEEEeecCCCCCCCCcHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-TFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
+.+|+|+|++++||++++|+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+...++.+|+.
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 359999999999999999999999999999999999987 5689999999876432 1245789999999888899999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD 1022 (1436)
||+.+....+. .......+.++++++.+++.+..+.. +..||+|||||++|||+|+.+|++++|||||+|||
T Consensus 91 ~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD 162 (232)
T cd03300 91 ENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 (232)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654331 22233344578899999998777665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1023 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1023 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 163 LKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999998764 899999999975 57788999999996 688888863
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=335.90 Aligned_cols=206 Identities=24% Similarity=0.333 Sum_probs=171.0
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC--c---cccceEEEecCCCC-cCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE--F---VPQRTSAYISQNDL-HIG 241 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~~~-~~~ 241 (1436)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 5999999999999999999999999999999999999987 9999999998741 1 12356999999863 345
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
..||+||+.++....+.. . .+....++++++.+||.+..++.+
T Consensus 97 ~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 139 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLP----------E------------------------DEVRKRVDNALKRTGIEHLKDKPT--- 139 (283)
T ss_pred cccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhhhhCCc---
Confidence 689999998864322110 0 001123567889999987766554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.++||++++|+
T Consensus 140 --~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 140 --HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999998653 25566668899999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|++++.|+++++.+
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999988754
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=337.67 Aligned_cols=214 Identities=19% Similarity=0.225 Sum_probs=172.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC-CcceEEEECCccCCCccc-------cceEEEecCCC-
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL-KFSGRVTYNGHGMEEFVP-------QRTSAYISQND- 237 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~- 237 (1436)
.++|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... .+.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987421 138999999998765432 13599999997
Q ss_pred -CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccc
Q 046196 238 -LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADT 316 (1436)
Q Consensus 238 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 316 (1436)
.+.+.+||.+++......... ..+ .+....++++|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~---------~~~------------------------~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG---------GNK------------------------KTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC---------CCH------------------------HHHHHHHHHHHHHCCCCChHH-
Confidence 478899999998765432100 000 011234566899999975221
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
+-++.++.|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+. .+.+++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 113456679999999999999999999999999999999999999999999998653 356777789999999999999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 046196 397 LILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~~ 416 (1436)
|++|++|++++.|+.+++.+
T Consensus 224 i~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCEEEEECCHHHHhh
Confidence 99999999999999998853
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=331.35 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=177.0
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 45677766542 2459999999999999999999999999999999999876 56899999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 919 Q---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 919 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
. ...++.++|++|+..+++.+||+||+.+....... .....++..+.+.++++.+++.+..++. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 3 22345689999998778889999999875211000 0011122334678899999998766665 4579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++|.|||+++|+++ .+.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999986 57789999999996 6888888
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 220 ~~ 221 (256)
T TIGR03873 220 PP 221 (256)
T ss_pred CH
Confidence 75
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=324.12 Aligned_cols=202 Identities=26% Similarity=0.345 Sum_probs=166.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 35999999999999999999999999999999999999997 9999999988754322 3469999999988999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhC-CcccccccccCc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILG-LEVCADTMVGDE 321 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 321 (1436)
+||+||+.++.+..+.. . ....+.+++.++ +++..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~---- 128 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRR---- 128 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCC----
Confidence 99999998864321100 0 001233455565 44444444
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
++.||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++.+. .+++++.++|+..++.+++|+|++|+
T Consensus 129 -~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 129 -GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999987642 35566668899999999999999999
Q ss_pred CCeEEEecChhHH
Q 046196 402 DGQIVYQGPRENV 414 (1436)
Q Consensus 402 ~G~iv~~G~~~~~ 414 (1436)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=329.71 Aligned_cols=224 Identities=24% Similarity=0.278 Sum_probs=180.3
Q ss_pred CCCCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC---CceeEE
Q 046196 833 PFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYVSGS 909 (1436)
Q Consensus 833 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~---~~~~G~ 909 (1436)
|..+..++++|+++.++ .+.+|+|+|+++++||++||+|+|||||||||++|+|..++ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 44455789999988763 24599999999999999999999999999999999998753 146899
Q ss_pred EEECCccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 046196 910 ITISGYPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984 (1436)
Q Consensus 910 i~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g 984 (1436)
|.++|.++.. ...++.++|++|+..+++ .||+||+.+..... + ....+...+.++++++.+++.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987632 123567999999988777 69999998764322 1 11233344567888999988532212222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 985 ~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
. .+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||+++|+++ ++.+.+|++++|
T Consensus 159 ~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 K-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred C-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 2 256899999999999999999999999999999999999999999999985 4799999999986 577899999999
Q ss_pred ecCcEEEEEcCC
Q 046196 1065 KRGGEEIYVGPL 1076 (1436)
Q Consensus 1065 ~~Gg~~~y~G~~ 1076 (1436)
++ |+++..|+.
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14237 236 YL-GDLIEYDKT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 85 789999885
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=316.55 Aligned_cols=179 Identities=42% Similarity=0.733 Sum_probs=153.8
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC---CCCCcceEEEECCccCCCcc--ccceEEEecCCCCcC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG---KDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHI 240 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~ 240 (1436)
++.+|+|+|+++++|++++|+||||||||||+++|+|.++ |+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~ 95 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHF 95 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEecccccC
Confidence 3569999999999999999999999999999999999998 55 999999999876432 245799999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++.+.. . +
T Consensus 96 ~~~tv~~~l~~~~~~~---------------------------------------------------------~-----~ 113 (202)
T cd03233 96 PTLTVRETLDFALRCK---------------------------------------------------------G-----N 113 (202)
T ss_pred CCCcHHHHHhhhhhhc---------------------------------------------------------c-----c
Confidence 9999999998753210 1 1
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.+..||||||||++||+||+.+|++++|||||+|||+.++..+.+.++++.+..+.+++++.||+.+++.+.+|++++|
T Consensus 114 ~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l 193 (202)
T cd03233 114 EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL 193 (202)
T ss_pred cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEE
Confidence 22346999999999999999999999999999999999999999999999865334566776777778999999999999
Q ss_pred cCCeEEEec
Q 046196 401 SDGQIVYQG 409 (1436)
Q Consensus 401 ~~G~iv~~G 409 (1436)
++|++++.|
T Consensus 194 ~~G~i~~~g 202 (202)
T cd03233 194 YEGRQIYYG 202 (202)
T ss_pred ECCEEEecC
Confidence 999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=325.26 Aligned_cols=203 Identities=27% Similarity=0.414 Sum_probs=166.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 35999999999999999999999999999999999999987 9999999998765432 3469999999988888
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHh-CCcccccccccCc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL-GLEVCADTMVGDE 321 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 321 (1436)
+||+||+.++..... . + + ....++.+++.+ +|.+..++.
T Consensus 95 ~tv~~~l~~~~~~~~---~-~---~-----------------------------~~~~~~~~l~~~~~l~~~~~~~---- 134 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D---Q-----------------------------FQERIKWVYELFPRLHERRIQR---- 134 (237)
T ss_pred CcHHHHHHHhhhccC---h-h---H-----------------------------HHHHHHHHHHHHHHHHHHHhCc----
Confidence 999999988632110 0 0 0 001123345555 355444433
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
++.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. ++.+|+.++|+..++.+.+|++++|+
T Consensus 135 -~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 135 -AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHhhCCEEEEEe
Confidence 356999999999999999999999999999999999999999999998764 24566668899889999999999999
Q ss_pred CCeEEEecChhHHH
Q 046196 402 DGQIVYQGPRENVL 415 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~ 415 (1436)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999998874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=337.65 Aligned_cols=225 Identities=24% Similarity=0.278 Sum_probs=182.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+...... . ...+...+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~--~-~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGL--F-KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCc--c-ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 47889988776421100 0 00112469999999999999999999999999999999999986 4689999999886
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 046196 918 NQE------TFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGV 988 (1436)
Q Consensus 918 ~~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~ 988 (1436)
... .+++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.+||.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 2456799999997 58899999999876544321 2334455667899999999963 44443 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
..||||||||++|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|||++||+.+ .+...+|+|++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 689999999999999999999999999999999999999999999999764 899999999976 46678999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 799999985
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=331.13 Aligned_cols=215 Identities=25% Similarity=0.307 Sum_probs=179.0
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 5889998876531 11348999999999999999999999999999999999987 5699999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. ...++.++|++|++. +++..|+.+++.+..... ....++..+.++++++.+++.+..+.. ++.||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567999999974 677889999998764322 122333445678899999998776654 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 455 4999999986 78999
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 223 ~g~~ 226 (269)
T PRK13648 223 EGTP 226 (269)
T ss_pred ecCH
Confidence 9875
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.09 Aligned_cols=203 Identities=26% Similarity=0.380 Sum_probs=169.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCC-cCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDL-HIGE 242 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~-~~~~ 242 (1436)
++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 4999999999999999999999999999999999999987 9999999998754321 356999999965 4677
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
.||+||+.|+.+..+.. . .+....++.+++.+||++..++.+
T Consensus 93 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~---- 134 (274)
T PRK13644 93 RTVEEDLAFGPENLCLP----------P------------------------IEIRKRVDRALAEIGLEKYRHRSP---- 134 (274)
T ss_pred chHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHHHhcCCc----
Confidence 89999999865322110 0 001123456788999987777655
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
+.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.. .+++|+.++|+..++ ..+|+|++|++
T Consensus 135 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 135 -KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH-hhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998764 356677788888887 57999999999
Q ss_pred CeEEEecChhHHH
Q 046196 403 GQIVYQGPRENVL 415 (1436)
Q Consensus 403 G~iv~~G~~~~~~ 415 (1436)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999998864
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=319.67 Aligned_cols=198 Identities=25% Similarity=0.301 Sum_probs=166.7
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-ccccceEEEeecCCCCCCCCcHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4679999999999999999999999999999999987 569999999987642 2345679999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
+.+...... . ......+.++++++.+++.+..++. ++.||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 986532211 1 1112234578899999998766665 4579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 1025 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999976 56778999999985 78887763
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=323.15 Aligned_cols=195 Identities=24% Similarity=0.355 Sum_probs=163.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc------ccceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV------PQRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 35999999999999999999999999999999999999987 999999998875432 135699999999889
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++.+..+.. . .+....++.+++.+||++..++.+
T Consensus 91 ~~~t~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP----------P------------------------REIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhCCh--
Confidence 9999999999875432110 0 001123456788899987766554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
.+||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++.+ .+++++.++|+..++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK--AGTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999754 3556777889888898999999999
Q ss_pred cCCeE
Q 046196 401 SDGQI 405 (1436)
Q Consensus 401 ~~G~i 405 (1436)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=324.97 Aligned_cols=206 Identities=23% Similarity=0.369 Sum_probs=168.6
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4899999999999999999999999999999999999763 12379999999987542 1135799999998888
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc----ccccc
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE----VCADT 316 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 316 (1436)
+ +||+||+.++.+..+... . .+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKD---------K------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 7 999999998654321000 0 00112345678889997 44444
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
. ++.|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.+ + .+++.++|+..++.+++|+
T Consensus 141 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 S-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 3 456999999999999999999999999999999999999999999998754 3 5666688999899999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 046196 397 LILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~ 415 (1436)
|++|++|+++++|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=326.72 Aligned_cols=194 Identities=20% Similarity=0.284 Sum_probs=164.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 4899999999999999999999999999999999999987 9999999976543 2456999999998888899999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+.++... . ....++.+++.+||++..+..+ ..||
T Consensus 101 nl~~~~~~-----------~-----------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~LS 135 (257)
T PRK11247 101 NVGLGLKG-----------Q-----------------------------WRDAALQALAAVGLADRANEWP-----AALS 135 (257)
T ss_pred HHHhcccc-----------h-----------------------------HHHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 99875210 0 0012345788899987665544 5699
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
|||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++.+. .+.+|+.++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999987543 34566668899888999999999999999999
Q ss_pred ecChh
Q 046196 408 QGPRE 412 (1436)
Q Consensus 408 ~G~~~ 412 (1436)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=323.43 Aligned_cols=232 Identities=24% Similarity=0.293 Sum_probs=179.2
Q ss_pred EeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 046196 122 RFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALA 201 (1436)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~ 201 (1436)
+.+|++.++.... ..+++.+...+.+ ..+...+++|+|+|+++++|++++|+|||||||||||++|+
T Consensus 2 ~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 2 EVSNLSKSYRVYS---KEPGLIGSLKSLF----------KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred ceecchhhccCcC---CccccchhHHHHH----------hcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4567777765432 2233333333322 12223456999999999999999999999999999999999
Q ss_pred cCcCCCCCcceEEEECCccCCCc--cccceEEEec-CCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCC
Q 046196 202 GKLGKDLKFSGRVTYNGHGMEEF--VPQRTSAYIS-QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIK 278 (1436)
Q Consensus 202 G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (1436)
|.++|+ +|+|.++|++.... ..++.++|++ |++.+++.+||+||+.+.....+...
T Consensus 69 Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~------------------ 127 (236)
T cd03267 69 GLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP------------------ 127 (236)
T ss_pred CCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH------------------
Confidence 999998 99999999875332 1235789998 55677788999999988644321100
Q ss_pred CCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCCh
Q 046196 279 PDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDS 358 (1436)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~ 358 (1436)
.+....++.+++.+||++..|+.++ .||||||||++||++|+.+|++++|||||+|||+
T Consensus 128 ----------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 128 ----------------ARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred ----------------HHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 0011234567888999988887664 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEec
Q 046196 359 STTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409 (1436)
Q Consensus 359 ~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G 409 (1436)
.++..+.+.|+++++. ++.+|+.++|+..++.+++|++++|++|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998653 3456666888888899999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=361.64 Aligned_cols=221 Identities=21% Similarity=0.300 Sum_probs=184.0
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+||||+|++||+++|+||||||||||+++|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 478888887652 2459999999999999999999999999999999999876434699999999876
Q ss_pred Cccc----ccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQET----FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~~~----~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.... .++.+||++|+..+++.+||+|++.+....+.....+.++..+.++++++.+++.+..+.. +..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCH
Confidence 4321 2356999999998899999999998765332111112333445688999999998777765 357999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
|||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+++ .+...+|++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999976 56778999999996 789999
Q ss_pred cCCCc
Q 046196 1074 GPLGR 1078 (1436)
Q Consensus 1074 G~~~~ 1078 (1436)
|+...
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 98643
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=325.46 Aligned_cols=220 Identities=21% Similarity=0.298 Sum_probs=176.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC--CC-ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 914 (1436)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 477888877652 2359999999999999999999999999999999999864 21 3589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ..+++.++|++|+..+++.+|++||+.+...... ....++..+.++++++.+++......... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87632 2345679999999999999999999987543321 11222334457888999998542111111 1256
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999975 689999999976 56788999999985 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 9898875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=334.68 Aligned_cols=219 Identities=19% Similarity=0.309 Sum_probs=176.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++.. ......+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK--------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC--------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 57889988776310 0001348999999999999999999999999999999999987 5689999999875
Q ss_pred Cc--------ccccceEEEeecCCCC-CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 046196 918 NQ--------ETFARISGYCEQTDIH-SPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPG 987 (1436)
Q Consensus 918 ~~--------~~~~~~~gyv~q~~~~-~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~ 987 (1436)
.. ...++.++|++|++.. ....|++||+.|..... ....++..+.++++++.++|. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 31 2345679999998632 23469999998764322 122333445678889999994 455544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999998764 899999999976 57788999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 788888874
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=336.32 Aligned_cols=224 Identities=17% Similarity=0.215 Sum_probs=179.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC-C-ceeEEEEECCc
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YVSGSITISGY 915 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~-~-~~~G~i~i~g~ 915 (1436)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 36788888776321 1124699999999999999999999999999999999998752 1 46899999998
Q ss_pred cCCcc---cc----cceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046196 916 PKNQE---TF----ARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986 (1436)
Q Consensus 916 ~~~~~---~~----~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~ 986 (1436)
++... .+ ++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.++|.+..+... .
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~--~ 149 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLD--V 149 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHh--C
Confidence 86431 11 23699999997 47899999988866543321 2234455667899999999975322211 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
.+.+|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++||+++ .+.+.+|+|++|.
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~ 228 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY 228 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 2468999999999999999999999999999999999999999999999976 4899999999976 4667899999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 229 ~-G~ive~g~~ 238 (326)
T PRK11022 229 A-GQVVETGKA 238 (326)
T ss_pred C-CEEEEECCH
Confidence 5 799999974
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=336.88 Aligned_cols=224 Identities=21% Similarity=0.289 Sum_probs=181.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC-ceeEEEEECCcc
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YVSGSITISGYP 916 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 916 (1436)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58899988766321 12246999999999999999999999999999999999998632 138999999988
Q ss_pred CCc---cc---cc-ceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046196 917 KNQ---ET---FA-RISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPG 987 (1436)
Q Consensus 917 ~~~---~~---~~-~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~ 987 (1436)
+.. .. ++ +.++|++|++ .+.|.+|+.+++........ ..+.++..+++.++++.++|.+..+... ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--CC
Confidence 643 11 12 4699999997 67899999999876544321 2334455567889999999975433221 23
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+.+||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+...+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999999765 899999999976 46678999999985
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 799999985
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=329.79 Aligned_cols=220 Identities=24% Similarity=0.277 Sum_probs=176.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC---CceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 688999988763 23589999999999999999999999999999999998753 13689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ..+++.++|++|++.+++. ||.||+.+....+.. .....+..+.++++++.+++.+....... ..+.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87642 2245678999999887774 999999886543311 11222334567889999999642111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+...+|++++|++ |+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 789999999976 46678999999986 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 8888874
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=333.05 Aligned_cols=217 Identities=23% Similarity=0.289 Sum_probs=179.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCc-eeEEEEECCcc
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-VSGSITISGYP 916 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~-~~G~i~i~g~~ 916 (1436)
.++++|+++.++. .++.+|+|||++|++||++||+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788888876531 12359999999999999999999999999999999999876321 13999999988
Q ss_pred CCc---ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 917 KNQ---ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
+.. ...++.+||++|++. .++..||+||+.|..... ..+.++..+.++++++.++|.+..+.. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 743 224567999999974 567899999998764322 233444556688999999998776665 46899
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. + ..+|++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 8999999999863 4 57999999986 7899
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
..|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99975
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=335.59 Aligned_cols=210 Identities=21% Similarity=0.302 Sum_probs=169.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|++|++|++++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|+++++
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 4899999999999999999999999999999999998631 01289999999988532 2246799999999866
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.||+||+.|+....+... .+ .....+..+++.++|.+..++.+++
T Consensus 176 -~~ti~eNi~~~~~~~~~~~----------~~-----------------------~~~~~~~~~l~~~~L~~~l~~~~~~ 221 (329)
T PRK14257 176 -EMSIFDNVAYGPRNNGIND----------RK-----------------------ILEKIVEKSLKSAALWDEVKDDLDK 221 (329)
T ss_pred -CCcHHHHHHhHHHhcCCCh----------HH-----------------------HHHHHHHHHHHHcCCcchhhhhhhC
Confidence 5899999998753321100 00 0011234456777776555566654
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
...+|||||||||+||||++.+|+||||||||+|||+.+...+.+.|+++.+ +.++++++|....+.+.+|+|++|
T Consensus 222 -~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 222 -AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred -CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4557999999999999999999999999999999999999999999998753 356777889998899999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 298 ~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 298 YQGWIEEAGETKTIF 312 (329)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999984
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=335.38 Aligned_cols=208 Identities=21% Similarity=0.246 Sum_probs=173.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCC--C
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQND--L 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~--~ 238 (1436)
.++|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 46999999999999999999999999999999999999887 9999999998765432 35699999997 5
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV-CADTM 317 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 317 (1436)
+.+.+||.+++....+.... ..+ .+....+.++|+.+||+. ..++
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~gL~~~~~~~- 150 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LSA------------------------AERREKALAMMAKVGLRPEHYDR- 150 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CCH------------------------HHHHHHHHHHHHHCCCChHHhcC-
Confidence 78889999999875432110 000 011224567899999963 4554
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
.++.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 151 ----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 151 ----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 45679999999999999999999999999999999999999999999998653 3567777999999999999999
Q ss_pred EEecCCeEEEecChhHHHH
Q 046196 398 ILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~~ 416 (1436)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999998853
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=290.36 Aligned_cols=198 Identities=28% Similarity=0.399 Sum_probs=170.0
Q ss_pred CccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc------c-ccceEEEeecCC
Q 046196 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE------T-FARISGYCEQTD 933 (1436)
Q Consensus 861 ~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~-~~~~~gyv~q~~ 933 (1436)
.....||++|++.|++||-+||+|||||||||||-+|+|+.. +.+|+|.+.|++.... . ..+.+|+|+|..
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 456789999999999999999999999999999999999987 5799999999986431 1 346799999999
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 046196 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 934 ~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ill 1013 (1436)
.+.|++|..||+...+.++... ..+......+.++.+||.+-.+.+ +.+|||||+|||+||||++..|+|||
T Consensus 98 ~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 98 HLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEEe
Confidence 9999999999999877776422 222334567899999998766655 46899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
-||||-+||..+...|.+++-.+.+ .|.|.|++||||. ...-|||.+-|.. |+++
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 9999999999999999999988864 4999999999975 6678999999986 5654
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=322.42 Aligned_cols=194 Identities=28% Similarity=0.398 Sum_probs=162.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc------ccceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV------PQRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1436)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35999999999999999999999999999999999999887 999999999876532 135699999999888
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++....+... ......++.+++.+||++..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP-- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 89999999998744321100 001123456788999987666554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. .+++++.++|+..++..+||++++|
T Consensus 136 ---~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 136 ---EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK--RGTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEEEEe
Confidence 46999999999999999999999999999999999999999999999754 3456777889999999999999999
Q ss_pred cCCe
Q 046196 401 SDGQ 404 (1436)
Q Consensus 401 ~~G~ 404 (1436)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=320.23 Aligned_cols=189 Identities=23% Similarity=0.357 Sum_probs=161.5
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC---c----ccccceEEEeecCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN---Q----ETFARISGYCEQTDIHS 936 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~q~~~~~ 936 (1436)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 459999999999999999999999999999999999886 56899999998743 1 12346799999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 046196 937 PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016 (1436)
Q Consensus 937 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDE 1016 (1436)
+.+|++||+.+..... .....+..+.++++++.+++.+..+.. +.+||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 122333445678999999998776665 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 1017 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 1017 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
||+|||+.+...+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777899999999975 44689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=329.44 Aligned_cols=205 Identities=25% Similarity=0.335 Sum_probs=168.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---ccceEEEecCCCC-cCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---PQRTSAYISQNDL-HIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~ 242 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999987 999999999875432 2356999999963 5778
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.++....+.. . .+....++++++.+||++..++.+
T Consensus 99 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 140 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------P------------------------KKMKDIIDDLAKKVGMEDYLDKEP---- 140 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhCCc----
Confidence 99999998864321100 0 001123566789999987776655
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++... ++++++.++|+..++ ..+|++++|++
T Consensus 141 -~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~-~~~d~v~~l~~ 217 (271)
T PRK13632 141 -QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEA-ILADKVIVFSE 217 (271)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHH-hhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998642 335666677777776 47999999999
Q ss_pred CeEEEecChhHHH
Q 046196 403 GQIVYQGPRENVL 415 (1436)
Q Consensus 403 G~iv~~G~~~~~~ 415 (1436)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=326.40 Aligned_cols=205 Identities=21% Similarity=0.278 Sum_probs=169.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc----------------cccceE
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF----------------VPQRTS 230 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------------~~~~~~ 230 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 35999999999999999999999999999999999999987 89999999876421 113569
Q ss_pred EEecCCCCcCCCCCHHHHHHhhhh-hcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhC
Q 046196 231 AYISQNDLHIGEMTVRETLAFSAR-CQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILG 309 (1436)
Q Consensus 231 ~yv~Q~~~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 309 (1436)
+|++|++.+++.+||+||+.++.. ..+. .. ......+..+++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SK------------------------QEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCC----------CH------------------------HHHHHHHHHHHHHcC
Confidence 999999998989999999987532 1110 00 001123456788999
Q ss_pred Ccccc-cccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 046196 310 LEVCA-DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP 388 (1436)
Q Consensus 310 L~~~~-dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 388 (1436)
|++.. +. .++.||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++.. .+.+|+.++|+..
T Consensus 141 l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHH
Confidence 97643 43 3457999999999999999999999999999999999999999999998754 3566666889998
Q ss_pred hHHHhcccEEEecCCeEEEecChhHHH
Q 046196 389 ETYELFDDLILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 389 ~~~~~~D~iivL~~G~iv~~G~~~~~~ 415 (1436)
++..+||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999988764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=332.72 Aligned_cols=219 Identities=20% Similarity=0.281 Sum_probs=179.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++... ....+.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 478889887763100 0012459999999999999999999999999999999999987 5799999999886
Q ss_pred Cc----ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 918 NQ----ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 918 ~~----~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
.. ...++.+||++|++. .+...||.|++.|..... .....+..+.++++++.++|.+..++. +..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCC
Confidence 43 224567999999864 233469999998865432 223344456688999999998877765 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 344 4999999986 7888
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
..|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 98875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=326.22 Aligned_cols=206 Identities=33% Similarity=0.497 Sum_probs=170.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35899999999999999999999999999999999999987 9999999987754322 34689999998887889
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++....+. . . .+....++.+++.+||++..++.+
T Consensus 92 tv~e~l~~~~~~~~~-~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 132 (258)
T PRK13548 92 TVEEVVAMGRAPHGL-S---------R------------------------AEDDALVAAALAQVDLAHLAGRDY----- 132 (258)
T ss_pred CHHHHHHhhhcccCC-C---------c------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----
Confidence 999999886421110 0 0 001123456788999987666655
Q ss_pred ccCChhhhhHHHHHHHHh------cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 324 RGISGGQRKRLTTGEMLV------GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
..|||||||||+||+||+ .+|++++|||||+|||+.+...+.+.|+++.+. .+++|+.++|+..++.+++|+|
T Consensus 133 ~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE-RGLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhcCEE
Confidence 469999999999999999 599999999999999999999999999998633 3456666889998999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|++++.|+++++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=330.62 Aligned_cols=206 Identities=24% Similarity=0.352 Sum_probs=170.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc----ccceEEEecCCCC-cCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV----PQRTSAYISQNDL-HIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~-~~~ 241 (1436)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 45999999999999999999999999999999999999998 999999999875422 2457999999963 344
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
..||.||+.|+....+... .+....++++++.+||++..++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5799999998754322100 001123567889999988777665
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEE
Confidence 469999999999999999999999999999999999999999999998653 35566667888888765 99999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|+++++|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 219 SGKVVMEGTPKEIFK 233 (280)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999998753
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=326.40 Aligned_cols=209 Identities=27% Similarity=0.356 Sum_probs=173.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367888877652 2358999999999999999999999999999999999876 5699999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSg 993 (1436)
.. ...++.++|++|+..+++ .||+||+.+....+ . . ....++++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988776 69999997653221 1 1 123467889999996 444543 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999976 56778999999996 68888
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8874
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=326.13 Aligned_cols=206 Identities=22% Similarity=0.326 Sum_probs=171.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc----------------ccceE
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV----------------PQRTS 230 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----------------~~~~~ 230 (1436)
.++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 35999999999999999999999999999999999999987 999999998775321 13569
Q ss_pred EEecCCCCcCCCCCHHHHHHhhhhh-cCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhC
Q 046196 231 AYISQNDLHIGEMTVRETLAFSARC-QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILG 309 (1436)
Q Consensus 231 ~yv~Q~~~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 309 (1436)
+|++|++.+++.+||+||+.++... .+.. . ......++.+++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------R------------------------AEAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcC
Confidence 9999999889899999999875321 0100 0 001123456788999
Q ss_pred CcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 046196 310 LEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE 389 (1436)
Q Consensus 310 L~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 389 (1436)
|++..+.. ++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+. .+++++.++|+..+
T Consensus 136 l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHH
Confidence 98766544 4569999999999999999999999999999999999999999999987653 35677778899999
Q ss_pred HHHhcccEEEecCCeEEEecChhHHH
Q 046196 390 TYELFDDLILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 390 ~~~~~D~iivL~~G~iv~~G~~~~~~ 415 (1436)
+.+++|++++|++|++++.|+++++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=323.91 Aligned_cols=201 Identities=28% Similarity=0.417 Sum_probs=171.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-cccceEEEeecCCCCCCCCcHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-TFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 359999999999999999999999999999999999876 5689999999886432 2345799999999888999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD 1022 (1436)
||+.+....+. .......+.++++++.+++.+..++. .+.||+||+||++||++|+.+|++++|||||+|||
T Consensus 91 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 91 DNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654331 22233345678899999998766665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1023 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1023 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+.+...+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999998765 899999999986 56788999999986 788888875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=320.06 Aligned_cols=196 Identities=23% Similarity=0.331 Sum_probs=160.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~ 239 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 45999999999999999999999999999999999999987 9999999998765332 1469999999888
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.++....... .. +....+..+++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VK------------------------EAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCCh-
Confidence 88999999998864321100 00 01123456788999987666544
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++.. +.+|+.++|+..++ +.+|+|++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~-~~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL-NTSFLVVTHDLELA-KKLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEE
Confidence 4699999999999999999999999999999999999999999999886532 45566678887776 45899999
Q ss_pred ecCCeEE
Q 046196 400 LSDGQIV 406 (1436)
Q Consensus 400 L~~G~iv 406 (1436)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=323.02 Aligned_cols=199 Identities=29% Similarity=0.407 Sum_probs=170.7
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-cccceEEEeecCCCCCCCCcHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-TFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
+|+|+|++|+|||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999877 5789999999876431 224579999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
+.+..... .....+..+.+.++++.+++.+..++. +..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 122333445578899999998777665 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1025 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
++..+.+.|++++.+ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998765 899999999975 46778999999986 788888874
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=333.72 Aligned_cols=205 Identities=21% Similarity=0.298 Sum_probs=169.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-------cccceEEEecCCC-C
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-------VPQRTSAYISQND-L 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~-~ 238 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 35899999999999999999999999999999999999998 99999999887532 1134699999986 2
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTM 317 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 317 (1436)
.+..+||+||+.|+....+.. . .+....++.+++.+||+ +..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------E------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 344689999998864322110 0 00112346678999996 455554
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.. .+++|+.++|+..++.++||+|
T Consensus 143 ~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 P-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 4 46999999999999999999999999999999999999999999998753 3667777899999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=330.48 Aligned_cols=218 Identities=25% Similarity=0.358 Sum_probs=175.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC------ceeEEEEE
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YVSGSITI 912 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~------~~~G~i~i 912 (1436)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56777776542 245999999999999999999999999999999999987632 02899999
Q ss_pred CCccCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046196 913 SGYPKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988 (1436)
Q Consensus 913 ~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~ 988 (1436)
+|.++.. ..+++.++|++|++..++.+||+||+.+....... ......+..+.++++++.+++.+..+.. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987642 23445689999998766679999999875321110 0111123345678899999998766554 4
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhh
Q 046196 989 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAF 1058 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~---------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 1058 (1436)
..||||||||++||++|+ .+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|+++ ++...+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998765 899999999986 577789
Q ss_pred CeEEEEecCcEEEEEcCC
Q 046196 1059 DELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1059 D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|++++|++ |+++..|+.
T Consensus 223 d~i~~l~~-G~i~~~g~~ 239 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAP 239 (272)
T ss_pred CEEEEEEC-CeEEEecCH
Confidence 99999986 789998875
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=325.78 Aligned_cols=219 Identities=21% Similarity=0.280 Sum_probs=174.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC-CceeEEEEECCccC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYVSGSITISGYPK 917 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 917 (1436)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56777776652 23589999999999999999999999999999999998642 25789999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
.. ...++.++|++|+..+++ .|++||+.+....+... ...+...+.++++++.+++.+....... ..++.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHH
Confidence 43 234567999999988887 69999998865433110 0122334457889999999532111111 124679999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999976 57788999999996 7899988
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 74
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=325.46 Aligned_cols=206 Identities=20% Similarity=0.285 Sum_probs=164.9
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL--KFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|++|++||+++|+||||||||||+++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 48999999999999999999999999999999999998631 1389999999876421 1245699999998777
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc----ccccc
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE----VCADT 316 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 316 (1436)
.+||+||+.|+....+.... ......++.+++.+|+. +..++
T Consensus 101 -~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 48999999987533211000 00012234556777763 33444
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
. ++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +++++.++|+..++.+++|+
T Consensus 147 ~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 N-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE---SYTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCE
Confidence 3 456999999999999999999999999999999999999999999999842 35666688999899999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 046196 397 LILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~ 415 (1436)
|++|++|+++.+|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998874
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=332.35 Aligned_cols=205 Identities=24% Similarity=0.344 Sum_probs=171.2
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCC-cCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDL-HIGEM 243 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~-~~~~l 243 (1436)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999998 9999999988754322 346899999963 45578
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++....+... ......++.+++.+||.+..++.+
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVP----- 135 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999987643221100 001123566889999987777655
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+.||+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999998653 3566777889999999999999999999
Q ss_pred eEEEecChhHHH
Q 046196 404 QIVYQGPRENVL 415 (1436)
Q Consensus 404 ~iv~~G~~~~~~ 415 (1436)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=327.91 Aligned_cols=205 Identities=27% Similarity=0.365 Sum_probs=168.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC--c---cccceEEEecCCCC-cC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE--F---VPQRTSAYISQNDL-HI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~~~-~~ 240 (1436)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 34899999999999999999999999999999999999998 9999999998742 1 11356999999864 34
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+..|+.||+.++....+.. . .+....++.+++.+||++..++.+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------E------------------------AEITRRVDEALTLVDAQHFRHQPI-- 134 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhcCCc--
Confidence 5678999998864322110 0 001123456788899987766554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|++++|
T Consensus 135 ---~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 135 ---QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-Q-GNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999764 2 456777889999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=323.33 Aligned_cols=212 Identities=23% Similarity=0.337 Sum_probs=172.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 35999999999999999999999999999999999999988 9999999987754332 2459999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.++..... ..+....... .......++.+++.+||++..++.+
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASLFFRL------------------------SAEEKDRIEEVLETIGLADEADRLA---- 141 (242)
T ss_pred CCHHHHHHHhhhccc--cccccccccc------------------------HHHHHHHHHHHHHHcCCchhhcCCh----
Confidence 999999988643110 0000000000 0011234567889999987766555
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
+.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.++||+|++|++
T Consensus 142 -~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 142 -GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEEC
Confidence 45999999999999999999999999999999999999999999998753 3 5666688999999999999999999
Q ss_pred CeEEEecChhHHH
Q 046196 403 GQIVYQGPRENVL 415 (1436)
Q Consensus 403 G~iv~~G~~~~~~ 415 (1436)
|+++++|+.+++.
T Consensus 218 g~~~~~~~~~~~~ 230 (242)
T TIGR03411 218 GSVLAEGSLDQVQ 230 (242)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=323.09 Aligned_cols=211 Identities=24% Similarity=0.317 Sum_probs=174.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ ++ ..|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 56778777653 11 238999999999999999999999999999999876 57899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 QE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+...+.++++++.+++.+..++. +..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHH
Confidence 32 124568999999999999999999986532110 11 123345678999999998777765 3579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 56788999999996 788898874
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=324.96 Aligned_cols=205 Identities=20% Similarity=0.296 Sum_probs=165.4
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCcc-----ccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL--KFSGRVTYNGHGMEEFV-----PQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|++|++||+++|+||||||||||+++|+|.++|.. ..+|+|.++|+++.... .++.++|++|++.++
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 48999999999999999999999999999999999987510 12899999998874321 235699999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc----ccccc
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE----VCADT 316 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 316 (1436)
+ +||+||+.|+.+..+.. .. +....++.+++.+|+. +..++
T Consensus 106 ~-~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 106 P-MSIYDNVAYGPRIHGAN----------KK------------------------DLDGVVENALRSAALWDETSDRLKS 150 (258)
T ss_pred c-ccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCCcchhhhhcC
Confidence 7 89999999875332110 00 0011245567888874 23343
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.+..|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +++|+.++|+..++.+++|+
T Consensus 151 -----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiivsH~~~~~~~~~d~ 222 (258)
T PRK14268 151 -----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIVTHNMQQAARISDY 222 (258)
T ss_pred -----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHHhCCE
Confidence 3456999999999999999999999999999999999999999999998742 35666688999999999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 046196 397 LILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~ 415 (1436)
|++|++|++++.|+++++.
T Consensus 223 i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 223 TGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988763
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=328.10 Aligned_cols=204 Identities=21% Similarity=0.320 Sum_probs=166.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-------ccceEEEecCCCC-c
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-------PQRTSAYISQNDL-H 239 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~-~ 239 (1436)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 5899999999999999999999999999999999999997 999999998875421 1356999999862 3
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-cccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV-CADTMV 318 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 318 (1436)
+...||+||+.|.....+.. . .+....++.+++.+||.. ..+..
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (280)
T PRK13649 98 LFEETVLKDVAFGPQNFGVS----------Q------------------------EEAEALAREKLALVGISESLFEKN- 142 (280)
T ss_pred hccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhhCC-
Confidence 44579999998864322110 0 001123456788899963 44544
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
++.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .+++|+.++|+..++.+++|+++
T Consensus 143 ----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiiivsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 143 ----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ--SGMTIVLVTHLMDDVANYADFVY 216 (280)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhCCEEE
Confidence 456999999999999999999999999999999999999999999998754 35566668898888999999999
Q ss_pred EecCCeEEEecChhHHH
Q 046196 399 LLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~ 415 (1436)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 217 VLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999998874
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=329.49 Aligned_cols=204 Identities=27% Similarity=0.363 Sum_probs=169.4
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-----cccceEEEecCCCC-cCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDL-HIG 241 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~-~~~ 241 (1436)
++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5899999999999999999999999999999999999987 99999999887421 11356999999962 345
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
.+||+||+.++....+. .+. +....+..+++.+||++..++.++
T Consensus 93 ~~tv~e~i~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~-- 136 (275)
T PRK13639 93 APTVEEDVAFGPLNLGL----------SKE------------------------EVEKRVKEALKAVGMEGFENKPPH-- 136 (275)
T ss_pred cccHHHHHHHHHHHcCC----------CHH------------------------HHHHHHHHHHHHCCCchhhcCChh--
Confidence 67999999876321110 000 011234567899999877776554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.||||||||++||++++.+|++++|||||+|||+.+..++.+.|+++.+ .+++|+.++|+..++.++||++++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK--EGITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999999864 35667778999999999999999999
Q ss_pred CCeEEEecChhHHH
Q 046196 402 DGQIVYQGPRENVL 415 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~ 415 (1436)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999999875
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=359.98 Aligned_cols=208 Identities=26% Similarity=0.405 Sum_probs=165.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .|
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~t 407 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP-GT 407 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCccccc-cc
Confidence 5899999999999999999999999999999999999998 9999999998876543 467999999998775 59
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++||+.++.+ +.+.+++.++++..+ .+..++ .|++..||.+|+.+ .
T Consensus 408 i~~Ni~~~~~-------------------------~~~~~~~~~~~~~~~------~~~~i~--~l~~gl~t~~~~~g-~ 453 (544)
T TIGR01842 408 VAENIARFGE-------------------------NADPEKIIEAAKLAG------VHELIL--RLPDGYDTVIGPGG-A 453 (544)
T ss_pred HHHHHhccCC-------------------------CCCHHHHHHHHHHhC------hHHHHH--hCccccccccCCCc-C
Confidence 9999985421 011112222221111 112233 35667789998764 5
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++||||++++|++|+|||||||||+.++..+.+.|+++.. ++.+++.++|+.. ..+.+|+|++|++|+
T Consensus 454 ~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~~tvi~ith~~~-~~~~~d~i~~l~~G~ 530 (544)
T TIGR01842 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA--RGITVVVITHRPS-LLGCVDKILVLQDGR 530 (544)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh--CCCEEEEEeCCHH-HHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998642 2344554666654 567899999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++++|+++++.+
T Consensus 531 i~~~g~~~~l~~ 542 (544)
T TIGR01842 531 IARFGERDEVLA 542 (544)
T ss_pred EEeeCCHHHHhh
Confidence 999999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=323.16 Aligned_cols=203 Identities=24% Similarity=0.310 Sum_probs=168.0
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC------c---cccceEEEecCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE------F---VPQRTSAYISQNDL 238 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~~~ 238 (1436)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 4999999999999999999999999999999999999987 9999999987631 0 11346999999998
Q ss_pred cCCCCCHHHHHHhhh-hhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccc
Q 046196 239 HIGEMTVRETLAFSA-RCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTM 317 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 317 (1436)
+++.+||+||+.+.. ...+.. . .+....++.+++.+||++..++.
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLS----------K------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 899999999997532 111100 0 00112345678899998766655
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
+ +.|||||||||+||||++.+|++++|||||+|||+.+...+.+.|+++.. .+++++.++|+..++.+++|++
T Consensus 139 ~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 P-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCEE
Confidence 4 46999999999999999999999999999999999999999999998753 3566777889988999999999
Q ss_pred EEecCCeEEEecChhHH
Q 046196 398 ILLSDGQIVYQGPRENV 414 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~ 414 (1436)
++|++|+++++|+++++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999998764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=343.45 Aligned_cols=213 Identities=25% Similarity=0.433 Sum_probs=177.3
Q ss_pred CCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECC
Q 046196 835 EPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG 914 (1436)
Q Consensus 835 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 914 (1436)
++..+..+|++|.++ +++++++|+|++++||+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 345566779888764 23379999999999999999999999999999999999987 4799999999
Q ss_pred ccC---CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc------ccccC
Q 046196 915 YPK---NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE------ALVGL 985 (1436)
Q Consensus 915 ~~~---~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~------~~~g~ 985 (1436)
.+. +...+++.++||+|++.+++ -|++||+.++. + +.+++ .+.++++..++.+..+ +.+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~----~-~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR----P-DASDE----EIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC----C-cCCHH----HHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 44568899999999998876 59999998653 2 22222 3567777777766544 33443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
++++|||||+|||++||||+++++++++||||++||.++.+.|++.|.++++ ++||+++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4678999999999999999999999999999999999999999999999876 599999999964 566789999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 6 788888864
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=321.21 Aligned_cols=202 Identities=33% Similarity=0.524 Sum_probs=163.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC---CCCCcceEEEECCccCCCccccceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG---KDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~l 243 (1436)
+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 569999999999999999999999999999999999998 66 999999998875433456799999999989999
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHH-HHHHhCCcccccccccCcc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDY-VLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~~ 322 (1436)
||+||+.|+.......... .+ ......+. .++.+++++..++.
T Consensus 97 tv~enl~~~~~~~~~~~~~---~~----------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 140 (226)
T cd03234 97 TVRETLTYTAILRLPRKSS---DA----------------------------IRKKRVEDVLLRDLALTRIGGNL----- 140 (226)
T ss_pred cHHHHHHHHHHhhcccccc---hH----------------------------HHHHHHHHHHHHhhcchhhhccc-----
Confidence 9999999875432110000 00 00011223 67888887665544
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCc-hhHHHhcccEEEec
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPA-PETYELFDDLILLS 401 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~-~~~~~~~D~iivL~ 401 (1436)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.++++.+ . +.+++.++|+. .++.+++|++++|+
T Consensus 141 ~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~-~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-R-NRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 456999999999999999999999999999999999999999999998754 3 44555566665 68999999999999
Q ss_pred CCeEEEec
Q 046196 402 DGQIVYQG 409 (1436)
Q Consensus 402 ~G~iv~~G 409 (1436)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=324.70 Aligned_cols=210 Identities=22% Similarity=0.314 Sum_probs=164.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG--KDLKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|+++++|++++|+|||||||||||++|+|.++ |....+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 48999999999999999999999999999999999864 1001289999999887531 1135699999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ .||+||+.++....+.... ......++.+++.+||.+...+.. +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 5999999987533221000 000122345677778754221122 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA---RYTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCeEEEEEecHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998742 356666889998999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 222 YMGKLIEVGPTEQIF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=326.41 Aligned_cols=204 Identities=23% Similarity=0.304 Sum_probs=168.4
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---ccceEEEecCCCC-cCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---PQRTSAYISQNDL-HIGEM 243 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~l 243 (1436)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999987 999999998875432 2356999999974 67888
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||++|+.|.....+.. . .+....++.+++.+||.+..|+.+
T Consensus 100 ~v~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVP----------Y------------------------DEMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCCc-----
Confidence 9999998864322110 0 001123456788999987666544
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+.||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++... .+++|+.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE-HNITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCchHHhc-CCEEEEEECC
Confidence 569999999999999999999999999999999999999999999987542 34566667888777765 9999999999
Q ss_pred eEEEecChhHHH
Q 046196 404 QIVYQGPRENVL 415 (1436)
Q Consensus 404 ~iv~~G~~~~~~ 415 (1436)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999998874
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=312.28 Aligned_cols=190 Identities=49% Similarity=0.851 Sum_probs=161.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCC--CCCceeEEEEECCc
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYVSGSITISGY 915 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~--~~~~~~G~i~i~g~ 915 (1436)
.++++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 477888887763110 001246999999999999999999999999999999999987 6 57999999999
Q ss_pred cCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046196 916 PKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 916 ~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq 995 (1436)
++.....++.++|++|++.+++.+|++||+.+...+. .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754445677999999998889999999997542110 499999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998877999999999986557788999999996 6777654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=328.28 Aligned_cols=219 Identities=22% Similarity=0.276 Sum_probs=174.5
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEEC
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITIS 913 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~ 913 (1436)
..+.++|+++.++ .+.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 4588999987763 235899999999999999999999999999999999986521 468999999
Q ss_pred CccCC-----cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046196 914 GYPKN-----QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988 (1436)
Q Consensus 914 g~~~~-----~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~ 988 (1436)
|.++. ....++.++|++|++.+++ .||+||+.+.+..+. ... ...+.++++++.+++....+.... ..+
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 152 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLN-ESG 152 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhC-CCc
Confidence 98753 1234567999999988887 499999988754331 111 223456778888877421111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec--
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR-- 1066 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-- 1066 (1436)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|++
T Consensus 153 ~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~ 230 (269)
T PRK14259 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEE 230 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccc
Confidence 67999999999999999999999999999999999999999999999854 799999999986 57889999999996
Q ss_pred ------C--cEEEEEcCC
Q 046196 1067 ------G--GEEIYVGPL 1076 (1436)
Q Consensus 1067 ------G--g~~~y~G~~ 1076 (1436)
| |+++..|+.
T Consensus 231 ~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 231 VEGGSGGKVGYLVEFNET 248 (269)
T ss_pred cccccccccceEEEeCCH
Confidence 2 678888875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=321.67 Aligned_cols=196 Identities=21% Similarity=0.297 Sum_probs=163.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc------ccceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV------PQRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~~~~ 240 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 35999999999999999999999999999999999999987 999999998875432 135699999999888
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.+.....+... .+....++.+++.+||++..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP-- 135 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc--
Confidence 99999999988643321100 000112345788899987666544
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+||+|++.+|++|+|||||+|||+.+...+.+.|+++.+ .+++++.++|+..++...+|+|++|
T Consensus 136 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 136 ---IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3566777899999999999999999
Q ss_pred cCCeEE
Q 046196 401 SDGQIV 406 (1436)
Q Consensus 401 ~~G~iv 406 (1436)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=342.30 Aligned_cols=194 Identities=25% Similarity=0.389 Sum_probs=168.8
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-------ccccceEEEeecCCCCCCCCcH
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-------ETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|+..+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999987 568999999987632 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
+||+.|..... ...+..+.++++++.++|.+..+.. +..||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 1233345678999999998877765 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1022 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999998765 899999999986 57788999999996 789998875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=321.83 Aligned_cols=200 Identities=22% Similarity=0.344 Sum_probs=166.6
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 4899999999999999999999999999999999999987 9999999988754322 356999999987775 69
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-ccccccccCccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTMVGDEML 323 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 323 (1436)
|+||+.++....+ . ....++.+++.+||+ +..++ .+
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATR-----DV 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 9999987532110 0 001234568889996 34443 34
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
..|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++... .+++|+.++|+..++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK-MNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 569999999999999999999999999999999999999999999987642 2456666889999999999999999999
Q ss_pred eEEEecChhHHH
Q 046196 404 QIVYQGPRENVL 415 (1436)
Q Consensus 404 ~iv~~G~~~~~~ 415 (1436)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=324.65 Aligned_cols=221 Identities=21% Similarity=0.262 Sum_probs=172.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 35999999999999999999999999999999999999987 9999999988764332 2348999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.++....... +....... .+... ....+....++.+++.+||++..++.+
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~-------~~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 151 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLK-------TPAFR---------RAESEALDRAATWLERVGLLEHANRQA---- 151 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhcc-------ccccc---------cchhHHHHHHHHHHHhCChhhhhhCCh----
Confidence 99999999864311000 00000000 00000 000011123556788999987666554
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
+.|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.+++|++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999987652 255666688999999999999999999
Q ss_pred CeEEEecChhHHH
Q 046196 403 GQIVYQGPRENVL 415 (1436)
Q Consensus 403 G~iv~~G~~~~~~ 415 (1436)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=327.93 Aligned_cols=224 Identities=21% Similarity=0.273 Sum_probs=178.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+..+.. ....+.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3788999877631100 000012459999999999999999999999999999999999987 5799999999876
Q ss_pred Ccc---cccceEEEeecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCC
Q 046196 918 NQE---TFARISGYCEQTDI--HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGL 991 (1436)
Q Consensus 918 ~~~---~~~~~~gyv~q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~L 991 (1436)
... ..++.++|++|+.. +.+.+|+.|++.+...... .....+..+.++++++.+++. +..+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 421 22356899999874 5678899999987654331 122333445678899999994 444543 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++...+|++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999986 57778999999986 788
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
+..|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 888864
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=318.63 Aligned_cols=191 Identities=25% Similarity=0.394 Sum_probs=162.6
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-------ccccceEEEeecCCCCCCCCcH
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-------ETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
|+|+++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999986 569999999987531 1234579999999988899999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
+||+.+..... .....++.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 1223345678899999998766654 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1022 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
|+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999976 46678999999996 6777654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=318.15 Aligned_cols=198 Identities=25% Similarity=0.350 Sum_probs=167.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 35999999999999999999999999999999999999987 999999998765322 25799999999888889999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.+.....+.. ...+..+++.+||++..|..+ ..|
T Consensus 89 ~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKA-----KQF 125 (223)
T ss_pred HHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhH-----hhC
Confidence 9998764321100 012345688899987666544 469
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv 406 (1436)
|||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+.+|+.++|+..++.+.+|+|++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999754 3456666888888899999999999999999
Q ss_pred EecChhH
Q 046196 407 YQGPREN 413 (1436)
Q Consensus 407 ~~G~~~~ 413 (1436)
+.|++.+
T Consensus 204 ~~~~~~~ 210 (223)
T TIGR03740 204 YQGKINK 210 (223)
T ss_pred EecChhh
Confidence 9998653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=325.51 Aligned_cols=219 Identities=21% Similarity=0.268 Sum_probs=175.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC--C-ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 914 (1436)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478999887652 23589999999999999999999999999999999998652 1 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ...++.+||++|+..+++. ||+||+.+...... ....++..+.++++++.+++.+....... ..+.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87632 2335679999999888875 99999987643321 11223334557788999888542111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
+||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999865 799999999986 57788999999986 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 9998875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=316.44 Aligned_cols=199 Identities=25% Similarity=0.315 Sum_probs=181.2
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---c---c-ccceEEEeecCCCCCCC
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---E---T-FARISGYCEQTDIHSPH 938 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~-~~~~~gyv~q~~~~~~~ 938 (1436)
-++|+|++++.||++.|||-||||||||+++|.++.+ |+.|+|+++|.++.. . . .++.+++|+|...++|+
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh 120 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence 5899999999999999999999999999999999887 679999999998642 1 2 24568999999999999
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 046196 939 VTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018 (1436)
Q Consensus 939 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPT 1018 (1436)
.||.||..|+..++ .++.+++++++.+.++.+||....+.. +.+||||+||||.|||||+.+|+||+||||+
T Consensus 121 rtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 121 RTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 99999999998776 567888999999999999999999887 5689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1019 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1019 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|.|||--+..+++-|.++.++ ++|||++|||.+ +.+.+-|||.+|+ +|+++..|.+
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp 249 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTP 249 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCH
Confidence 999999999999999998655 899999999997 7889999999998 5899999975
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=324.42 Aligned_cols=219 Identities=26% Similarity=0.307 Sum_probs=173.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC--CC-ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478889887652 2358999999999999999999999999999999999743 21 2489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ..+++.++|++|+..+++ .||+||+.+....+. ....+...+.++++++.+++.+....... ..+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLH-DSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHh-cCcc
Confidence 87632 123567999999988777 899999987653321 11122334557788888887531111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 689999999976 57788999999996 68
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
+++.|+.
T Consensus 225 i~~~g~~ 231 (252)
T PRK14239 225 LIEYNDT 231 (252)
T ss_pred EEEeCCH
Confidence 8888874
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=335.42 Aligned_cols=226 Identities=16% Similarity=0.210 Sum_probs=178.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC--CceeEEEEECCc
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYVSGSITISGY 915 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~ 915 (1436)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 36788887766321 1234699999999999999999999999999999999998752 246899999998
Q ss_pred cCCc---cc----ccceEEEeecCCC--CCCCCcHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCcccccccc
Q 046196 916 PKNQ---ET----FARISGYCEQTDI--HSPHVTVYESLVYSAWLRLPPE---VDSDTRKMFVEEVMELVELNPIREALV 983 (1436)
Q Consensus 916 ~~~~---~~----~~~~~gyv~q~~~--~~~~lTv~e~l~~~~~l~~~~~---~~~~~~~~~v~~vl~~l~l~~~~~~~~ 983 (1436)
++.. .. .++.++|++|++. +.|.+||.+++........... ....+..+.+.++++.++|.+..+...
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 7642 11 1246999999875 6788999999975422110000 111234456889999999975332111
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEE
Q 046196 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELL 1062 (1436)
Q Consensus 984 g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~ 1062 (1436)
..+.+|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|+++
T Consensus 154 --~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 154 --SFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred --CCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 124689999999999999999999999999999999999999999999999874 899999999976 5668899999
Q ss_pred EEecCcEEEEEcCC
Q 046196 1063 LMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1063 ~l~~Gg~~~y~G~~ 1076 (1436)
+|.+ |+++..|+.
T Consensus 231 vm~~-G~ive~g~~ 243 (330)
T PRK15093 231 VLYC-GQTVETAPS 243 (330)
T ss_pred EEEC-CEEEEECCH
Confidence 9986 799999974
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=357.41 Aligned_cols=209 Identities=29% Similarity=0.372 Sum_probs=175.5
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++|+|++|+++. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 46999999998741 22469999999999999999999999999999999999987 579999999998
Q ss_pred CC---cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KN---QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~---~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
+. ...+++.+|||+|++.+++ -|++||+.+.. | .+.+ .+.++++..++.+. .|+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 3457788999999998875 59999998642 2 2222 25667777776643 24555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
..+||||||||++|||||+++|+||+||||||+||+.+.+.+++.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999886 589999999975 5678999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 799999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.52 Aligned_cols=212 Identities=23% Similarity=0.290 Sum_probs=168.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCcc---ccceEEEecCCCCcCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEEFV---PQRTSAYISQNDLHIGE 242 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~ 242 (1436)
++|+|+|+++++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 5899999999999999999999999999999999998741 113899999998875432 23579999999888899
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.++.+..+.... . .+....++.+++.+||.+..+... +..
T Consensus 97 ~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~ 143 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKS--------K------------------------KELQERVRWALEKAQLWDEVKDRL-DAP 143 (250)
T ss_pred CcHHHHHHHHHHhccccCC--------H------------------------HHHHHHHHHHHHHcCCCcchhhhh-cCC
Confidence 9999999987532210000 0 001123456788888864211111 233
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+..++.+.+|+|++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 457999999999999999999999999999999999999999999998742 45667788988888999999999999
Q ss_pred CeEEEecChhHHH
Q 046196 403 GQIVYQGPRENVL 415 (1436)
Q Consensus 403 G~iv~~G~~~~~~ 415 (1436)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14247 221 GQIVEWGPTREVF 233 (250)
T ss_pred CeEEEECCHHHHH
Confidence 9999999998774
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=321.12 Aligned_cols=201 Identities=23% Similarity=0.298 Sum_probs=166.3
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC--ceeEEEEECCccCCcccc-cceEEEeecCCC--CCCCCc
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YVSGSITISGYPKNQETF-ARISGYCEQTDI--HSPHVT 940 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~q~~~--~~~~lT 940 (1436)
+|+|+|+++++|++++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|+.. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999987631 168999999988654322 357899999974 557789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP---IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1017 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~---~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP 1017 (1436)
+.|++.+...... ...+...+.++++++.+++.+ ..+.. +..|||||||||+|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 112333456789999999973 34443 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1018 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1018 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|+|||+.+...+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999986 57778999999986 788888874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=321.07 Aligned_cols=201 Identities=25% Similarity=0.332 Sum_probs=162.4
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc------ccceEEEecCCC--Cc
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV------PQRTSAYISQND--LH 239 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~~--~~ 239 (1436)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5999999999999999999999999999999999999987 999999999876533 235799999997 45
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-ccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTMV 318 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 318 (1436)
++.+||+||+.+.....+.... + + ......+.+++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~----------~-----------~-----------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK----------K-----------E-----------ARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH----------H-----------H-----------HHHHHHHHHHHHCCCChhHhhCCc
Confidence 6789999999886432211000 0 0 0001123567888885 4445443
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.+++|+|+
T Consensus 144 -----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 -----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE-LGLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEE
Confidence 469999999999999999999999999999999999999999999998652 24566668888888888999999
Q ss_pred EecCCeEEEec
Q 046196 399 LLSDGQIVYQG 409 (1436)
Q Consensus 399 vL~~G~iv~~G 409 (1436)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=323.94 Aligned_cols=218 Identities=21% Similarity=0.272 Sum_probs=175.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
-+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467888877652 235899999999999999999999999999999999986531 2689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGV 988 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~ 988 (1436)
.++.. ...++.++|++|++.+++ .|++||+.|....... ...++..+.++++++.+++.+ +.+.. . ..+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-~~~ 145 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDL-K-KSA 145 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHh-h-CCc
Confidence 87632 123566999999988887 8999999876543211 122334456788899998742 11111 1 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
..||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |
T Consensus 146 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G 222 (251)
T PRK14270 146 LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-G 222 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999876 689999999976 57788999999986 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
++++.|+.
T Consensus 223 ~i~~~~~~ 230 (251)
T PRK14270 223 DLIEFNKT 230 (251)
T ss_pred eEEEeCCH
Confidence 88898875
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=327.27 Aligned_cols=208 Identities=25% Similarity=0.340 Sum_probs=169.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---ccceEEEecCCCC-cCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---PQRTSAYISQNDL-HIGEM 243 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~l 243 (1436)
++|+|+|++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 4899999999999999999999999999999999999887222399999999875432 2356999999974 67789
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.|+.+..+.. . .+....++.+++.+||++..++.+
T Consensus 101 tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVP----------R------------------------PEMIKIVRDVLADVGMLDYIDSEP----- 141 (282)
T ss_pred CHHHHHHhhHHhCCCC----------H------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 9999998864322110 0 001123566789999987666544
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++ ..||++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999988653 355666678888777 589999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
++++.|+++++.+
T Consensus 220 ~i~~~g~~~~~~~ 232 (282)
T PRK13640 220 KLLAQGSPVEIFS 232 (282)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988753
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=323.28 Aligned_cols=219 Identities=23% Similarity=0.307 Sum_probs=174.0
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367888877652 235899999999999999999999999999999999975421 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ...++.++|++|+..+++ .|++||+.+....+.. ...++..+.++++++.+++.+........ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKK-SAL 145 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhc-CCC
Confidence 87642 124567999999988777 8999999886543211 12233445678888888874211111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GE 222 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999854 799999999975 57788999999996 68
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 223 i~~~~~~ 229 (250)
T PRK14240 223 IVEFGDT 229 (250)
T ss_pred EEEeCCH
Confidence 8888864
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=338.97 Aligned_cols=212 Identities=27% Similarity=0.424 Sum_probs=174.1
Q ss_pred CCceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECC
Q 046196 835 EPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG 914 (1436)
Q Consensus 835 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 914 (1436)
.+..|+|+|+.+++. +++++|+++||+|++||.+||+|+|||||||++|+|.+... .+|+|+|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999998874 23459999999999999999999999999999999999875 589999999
Q ss_pred ccCC---cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------cccccccc
Q 046196 915 YPKN---QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-------PIREALVG 984 (1436)
Q Consensus 915 ~~~~---~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-------~~~~~~~g 984 (1436)
++++ .+.+|+.+|||||+..++ +-||.+|+.|+. ...+.++ |-++.+..++. +-..+.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhHh
Confidence 9864 356788999999987776 569999999864 1233322 33444444443 33445566
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 985 ~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
.. +..|||||||||+||||+++||+|+++|||||.||+.+...+++.+++. ..|+|+|++.|+. +....||+|++|
T Consensus 483 er-G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ER-GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVL 558 (591)
T ss_pred hc-ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEE
Confidence 54 3569999999999999999999999999999999999999999999984 4589999999995 578899999999
Q ss_pred ecCcEEEEEcCC
Q 046196 1065 KRGGEEIYVGPL 1076 (1436)
Q Consensus 1065 ~~Gg~~~y~G~~ 1076 (1436)
++ |++...|+.
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 97 678888875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=324.23 Aligned_cols=207 Identities=21% Similarity=0.269 Sum_probs=166.6
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC--C-ceeEEEEECCccCCc-----ccccceEEEeecCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YVSGSITISGYPKNQ-----ETFARISGYCEQTDIH 935 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~q~~~~ 935 (1436)
+.+|+|+||+|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 4589999999999999999999999999999999998642 1 368999999987532 1245679999999888
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 046196 936 SPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1015 (1436)
Q Consensus 936 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlD 1015 (1436)
++. |++||+.+....+. .....+...+.++++++.+++.+........ .+..||||||||++|||+|+.+|++|+||
T Consensus 98 ~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred ccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 775 99999987643321 1112223345578889999986521111111 24679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 175 EPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999985 4899999999976 56778999999996 688888874
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=339.34 Aligned_cols=195 Identities=24% Similarity=0.378 Sum_probs=168.9
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-------cccceEEEecCCCCcCCCCC
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-------VPQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~~~~~~~lT 244 (1436)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999998 99999999886431 12467999999999999999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.|+.+.. ....++.+++.+||++..+..+ +
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999998863200 0112456788999987776554 5
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++++.++|+..++..++|+|++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999998653 25566778999999999999999999999
Q ss_pred EEEecChhHHH
Q 046196 405 IVYQGPRENVL 415 (1436)
Q Consensus 405 iv~~G~~~~~~ 415 (1436)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999885
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=317.61 Aligned_cols=206 Identities=27% Similarity=0.367 Sum_probs=172.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 35999999999999999999999999999999999999997 8999999998764332 3579999999988889999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.++....+... ......++.+++.+||++..++.+ ..
T Consensus 90 ~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T cd03300 90 FENIAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRKP-----SQ 130 (232)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999988644321100 001123456788999987776554 46
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.... +.+|+.++|+..++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~-~~tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999876522 45666678888889999999999999999
Q ss_pred EEecChhHHH
Q 046196 406 VYQGPRENVL 415 (1436)
Q Consensus 406 v~~G~~~~~~ 415 (1436)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999887764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=340.68 Aligned_cols=190 Identities=24% Similarity=0.387 Sum_probs=166.8
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-------ccccceEEEeecCCCCCCCCcH
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-------ETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|+..++|++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999987 569999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
+||+.|... ....+.++++++.+++.+..+.. +..||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 11234578999999998877765 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1022 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999998765 899999999986 67889999999996 789998875
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=323.04 Aligned_cols=219 Identities=25% Similarity=0.329 Sum_probs=174.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+||++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 367888877652 235899999999999999999999999999999999986531 2689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....+...+.+++.++.+++.+..+.... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELN-KPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChh
Confidence 87642 123567999999988877 899999987653321 11222334456788888888542111111 1256
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
+||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ .+.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GE 222 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999865 799999999976 57788999999996 68
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14262 223 LIEYGPT 229 (250)
T ss_pred EEEecCH
Confidence 8888874
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=370.11 Aligned_cols=207 Identities=29% Similarity=0.450 Sum_probs=168.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
.+|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.++ +.|
T Consensus 471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf-~~t 546 (694)
T TIGR01846 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLF-SRS 546 (694)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeeh-hhh
Confidence 4899999999999999999999999999999999999998 9999999999887654 46799999998855 569
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++|||.++.. +.+.+++.+++...+.++ . .-.|++..||.+|+.+ .
T Consensus 547 i~eNi~~~~~-------------------------~~~~~~i~~a~~~~~l~~------~--i~~lp~gl~t~i~~~g-~ 592 (694)
T TIGR01846 547 IRDNIALCNP-------------------------GAPFEHVIHAAKLAGAHD------F--ISELPQGYNTEVGEKG-A 592 (694)
T ss_pred HHHHHhcCCC-------------------------CCCHHHHHHHHHHcChHH------H--HHhCcCccCcEecCCC-C
Confidence 9999987521 112223333333222211 1 2236778899999765 5
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++||||++.+|++|+||||||+||+.++..+.+.|++.. .+.+++.++|..+ ....+|+|++|++|+
T Consensus 593 ~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~---~~~t~i~itH~~~-~~~~~d~ii~l~~G~ 668 (694)
T TIGR01846 593 NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC---RGRTVIIIAHRLS-TVRACDRIIVLEKGQ 668 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh---CCCEEEEEeCChH-HHHhCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999863 2345555666654 556799999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++++|+++++++
T Consensus 669 i~~~g~~~~l~~ 680 (694)
T TIGR01846 669 IAESGRHEELLA 680 (694)
T ss_pred EEEeCCHHHHHH
Confidence 999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.48 Aligned_cols=212 Identities=21% Similarity=0.310 Sum_probs=167.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCC--cc---ccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEE--FV---PQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~--~~---~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++.. .. .++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 4899999999999999999999999999999999998762 1138999999998752 11 235699999999889
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++....+..... . .....++.+++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~--------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSK--------K------------------------ELDERVEWALKKAALWDEVKDRL-N 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCH--------H------------------------HHHHHHHHHHHHcCCccchhhhh-c
Confidence 8999999998865322110000 0 00112355677888743211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+++.++|+..++..++|+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999999753 3 56666889988999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=363.12 Aligned_cols=207 Identities=22% Similarity=0.338 Sum_probs=167.4
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+| +.|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~T 424 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRS 424 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccc-ccc
Confidence 4899999999999999999999999999999999999998 9999999999887654 36799999999866 569
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++|||.++.. +.+.+++.+++...+.+ ..+ -.|++..||.+|+.+ +
T Consensus 425 i~~Ni~~~~~-------------------------~~~d~~i~~al~~~~l~------~~i--~~lp~gldt~i~~~g-~ 470 (588)
T PRK13657 425 IEDNIRVGRP-------------------------DATDEEMRAAAERAQAH------DFI--ERKPDGYDTVVGERG-R 470 (588)
T ss_pred HHHHHhcCCC-------------------------CCCHHHHHHHHHHhCHH------HHH--HhCcccccchhcCCC-C
Confidence 9999988621 11112222222221111 111 236778899998864 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.||||||||++||||++++|+|++||||||+||+.++..+.+.|++.. .+ .++++++|+. +..+.+|+|++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~-~tvIiitHr~-~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KG-RTTFIIAHRL-STVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cC-CEEEEEEecH-HHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999998763 23 4455466665 5678899999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++.+|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (588)
T PRK13657 547 VVESGSFDELVA 558 (588)
T ss_pred EEEeCCHHHHHH
Confidence 999999998864
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=327.36 Aligned_cols=216 Identities=22% Similarity=0.297 Sum_probs=179.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. ..+..+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 4788898877631 012358999999999999999999999999999999999987 5799999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.+++.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999964 567789999998764322 123333445678999999998776654 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 8999999999763 4 46999999996 68888
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8874
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=325.90 Aligned_cols=209 Identities=25% Similarity=0.375 Sum_probs=170.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 5999999999999999999999999999999999999987 9999999987754322 346999999988888999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|.||+.++..... .. . + .. . ......++.+++.+||++..++.++
T Consensus 102 v~e~l~~~~~~~~-~~-~-------------~-~~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 146 (265)
T PRK10575 102 VRELVAIGRYPWH-GA-L-------------G-RF-G-------------AADREKVEEAISLVGLKPLAHRLVD----- 146 (265)
T ss_pred HHHHHHhCccccc-cc-c-------------c-CC-C-------------HHHHHHHHHHHHHcCCHHHhcCCcc-----
Confidence 9999987532100 00 0 0 00 0 0011234567889999876666554
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||+||+.+|++|||||||+|||..++..+.+.|++++.. .+++|+.++|+.+++.+.+|+|++|++|+
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 59999999999999999999999999999999999999999999998643 24566768899999999999999999999
Q ss_pred EEEecChhHHH
Q 046196 405 IVYQGPRENVL 415 (1436)
Q Consensus 405 iv~~G~~~~~~ 415 (1436)
+++.|+.+++.
T Consensus 226 i~~~~~~~~~~ 236 (265)
T PRK10575 226 MIAQGTPAELM 236 (265)
T ss_pred EEEecCHHHhc
Confidence 99999987763
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=325.55 Aligned_cols=207 Identities=25% Similarity=0.322 Sum_probs=170.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCC--C
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQND--L 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~--~ 238 (1436)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999999987 9999999988764322 34699999996 4
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTM 317 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 317 (1436)
+.+.+||+||+.+...... .... ......++.+++.+||+ +..+..
T Consensus 101 ~~~~~tv~~~l~~~~~~~~---------~~~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~ 147 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLT---------SLDE------------------------SEQKARIAELLDMVGLRSEDADKL 147 (265)
T ss_pred cCCCCCHHHHHHHHHHHhc---------CCCH------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 5678999999987532110 0000 00112345678899996 455544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
+ +.|||||||||+||+||+.+|++|||||||+|||+.+...+.+.|+++.+. .+++|+.++|+...+.+++|++
T Consensus 148 ~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~i 221 (265)
T TIGR02769 148 P-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRV 221 (265)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcEE
Confidence 4 469999999999999999999999999999999999999999999998653 3566777889999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|++++.|+++++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 222 AVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEeCCEEEEECCHHHHc
Confidence 999999999999998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=319.61 Aligned_cols=204 Identities=23% Similarity=0.291 Sum_probs=167.3
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC----CCCcceEEEECCccCCCccc-cceEEEecCCCC--cCC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK----DLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDL--HIG 241 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~--~~~ 241 (1436)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 58999999999999999999999999999999999988 6 8999999998765432 247999999974 456
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc---cccccc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV---CADTMV 318 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~v 318 (1436)
.+|+.|++.+.....+.. . ......++.+++.+||++ ..+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 120 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------S-------------------------KQARALILEALEAVGLPDPEEVLK--- 120 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------H-------------------------HHHHHHHHHHHHHcCCCchHHHHh---
Confidence 789999998754321100 0 001123466788999974 334
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
+.+..|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++.+. .+++|+.++|+.+++..++|+|+
T Consensus 121 --~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~ 197 (230)
T TIGR02770 121 --KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVA 197 (230)
T ss_pred --CChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 334569999999999999999999999999999999999999999999987642 35566668899889999999999
Q ss_pred EecCCeEEEecChhHHH
Q 046196 399 LLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~ 415 (1436)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=320.75 Aligned_cols=213 Identities=23% Similarity=0.275 Sum_probs=169.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECCccCCCccc----cceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL--GKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~ 240 (1436)
.++|+|+|++|++|++++|+||||||||||+++|+|.+ +|+ +|+|.++|.++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 35999999999999999999999999999999999995 566 8999999988754332 23489999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-ccccccc
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV-CADTMVG 319 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg 319 (1436)
+.+||+|++.+..+....... . ...+ ..+....++.+++.+||++ ..++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~----------~------~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARG----------E------EPLD-----------LLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccc----------c------cccc-----------HHHHHHHHHHHHHHcCCchhhcccccc
Confidence 999999999886432110000 0 0000 0011123567889999973 4554432
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh-cccEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL-FDDLI 398 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~ii 398 (1436)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+++|+.++|+..++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999999854 345666688888888888 89999
Q ss_pred EecCCeEEEecChhHHH
Q 046196 399 LLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~ 415 (1436)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=322.48 Aligned_cols=219 Identities=23% Similarity=0.263 Sum_probs=174.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888876652 245899999999999999999999999999999999987632 3589999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 915 YPKNQ----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 915 ~~~~~----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
.++.. ...++.++|++|++.+++ .||.||+.+...... ....+...+.+++.++.+++.+........ .+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 87631 234567999999988887 899999987643221 111223345567788888875321111111 2467
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 589999999986 57788999999996 789
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 888874
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=323.21 Aligned_cols=208 Identities=29% Similarity=0.406 Sum_probs=170.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 35999999999999999999999999999999999999987 9999999988765432 24689999998778889
Q ss_pred CHHHHHHhhhh-hcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 244 TVRETLAFSAR-CQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 244 TV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
||+||+.++.. ... .. . .+ ..+....++.+++.+||.+..++.+
T Consensus 91 tv~e~l~~~~~~~~~----------~~------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 135 (256)
T TIGR03873 91 TVRDVVALGRIPHRS----------LW------A-GD--------------SPHDAAVVDRALARTELSHLADRDM---- 135 (256)
T ss_pred CHHHHHHhcchhhhh----------hc------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 99999988521 000 00 0 00 0001123456788899977666555
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
..|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+++|+.++|+..++.+++|+|++|++
T Consensus 136 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 136 -STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 45999999999999999999999999999999999999999999998753 356677788999999999999999999
Q ss_pred CeEEEecChhHHH
Q 046196 403 GQIVYQGPRENVL 415 (1436)
Q Consensus 403 G~iv~~G~~~~~~ 415 (1436)
|+++..|+.+++.
T Consensus 213 G~i~~~g~~~~~~ 225 (256)
T TIGR03873 213 GRVVAAGPPREVL 225 (256)
T ss_pred CCEEEecCHHHhh
Confidence 9999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=332.49 Aligned_cols=218 Identities=17% Similarity=0.174 Sum_probs=171.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC-CcceEEEECCccCCCccc-------cceEEEecCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL-KFSGRVTYNGHGMEEFVP-------QRTSAYISQNDL 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~ 238 (1436)
..+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... .+.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 469999999999999999999999999999999999986411 138999999998765432 136999999975
Q ss_pred --cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccc
Q 046196 239 --HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADT 316 (1436)
Q Consensus 239 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 316 (1436)
+.+.+||.+++.+.......... . ... ..+....+..+|+.+||++..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~------~---------~~~-------------~~~~~~~~~~~L~~~gL~~~~~- 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGR------W---------WQR-------------FGWRKRRAIELLHRVGIKDHKD- 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccc------c---------ccc-------------HHHHHHHHHHHHHHCCCCChHH-
Confidence 57889999999764221000000 0 000 0001123566899999975321
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
+-++.+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+. .+.+++.++|+...+.+++|+
T Consensus 151 -~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~~~dr 228 (330)
T PRK15093 151 -AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQWADK 228 (330)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCE
Confidence 113455679999999999999999999999999999999999999999999998653 356777799999999999999
Q ss_pred EEEecCCeEEEecChhHHH
Q 046196 397 LILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~ 415 (1436)
|++|++|+|++.|+.+++.
T Consensus 229 i~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 229 INVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=325.28 Aligned_cols=220 Identities=22% Similarity=0.270 Sum_probs=176.5
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC---CceeEEEEEC
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYVSGSITIS 913 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 913 (1436)
..++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3588999988763 23589999999999999999999999999999999998652 1368999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046196 914 GYPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988 (1436)
Q Consensus 914 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~ 988 (1436)
|.++.. ...++.++|++|+..+++. |++||+.+...... ....+..++.++++++.+++.+......+ ..+
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLH-ENA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCc
Confidence 987642 1345679999999888875 99999987654321 11222233457888888888532111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|++ |
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G 243 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-G 243 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999875 789999999976 57788999999996 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 244 ~i~~~g~~ 251 (272)
T PRK14236 244 KLVEYGDT 251 (272)
T ss_pred EEEecCCH
Confidence 88888874
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=356.37 Aligned_cols=218 Identities=25% Similarity=0.338 Sum_probs=182.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++.+|+|+||+|++||++||+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 377888887652 2459999999999999999999999999999999999987 5689999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 918 NQE----TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 918 ~~~----~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
... ..++.++|++|++.+++.+||+|++.+....... ...+.++.++.++++++.+++.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCC
Confidence 321 1235689999999899999999999876432111 11223334456789999999988777653 4799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|+++ ++...+|++++|++ |+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57788999999996 78888
Q ss_pred EcCCC
Q 046196 1073 VGPLG 1077 (1436)
Q Consensus 1073 ~G~~~ 1077 (1436)
.|+..
T Consensus 222 ~~~~~ 226 (501)
T PRK10762 222 EREVA 226 (501)
T ss_pred ecCcC
Confidence 88864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=323.22 Aligned_cols=209 Identities=27% Similarity=0.395 Sum_probs=170.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 35999999999999999999999999999999999999887 9999999987654322 34699999998888889
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||.||+.++..-.. ..+. .. + ......++.+++.+||++..++.+
T Consensus 92 tv~~~i~~~~~~~~--~~~~---~~----------~---------------~~~~~~~~~~l~~~~l~~~~~~~~----- 136 (255)
T PRK11231 92 TVRELVAYGRSPWL--SLWG---RL----------S---------------AEDNARVNQAMEQTRINHLADRRL----- 136 (255)
T ss_pred cHHHHHHhccchhh--hhcc---CC----------C---------------HHHHHHHHHHHHHcCCHHHHcCCc-----
Confidence 99999988631000 0000 00 0 001123456788899987666654
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+.|||||||||+||+|++.+|++|+|||||+|||+.+...+.+.|+++.. .+++++.++|+..++.+++|++++|++|
T Consensus 137 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 3556777889999999999999999999
Q ss_pred eEEEecChhHHH
Q 046196 404 QIVYQGPRENVL 415 (1436)
Q Consensus 404 ~iv~~G~~~~~~ 415 (1436)
+++..|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999988763
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=324.20 Aligned_cols=216 Identities=23% Similarity=0.309 Sum_probs=176.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC-c--eeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--VSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~-~--~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478889887653 235899999999999999999999999999999999987632 2 489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP----IREALVGL 985 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~ 985 (1436)
.++.. ...++.++|++|++.+++ .||+||+.+....+. ..+..+..+.++++++.+++.+ ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK---- 146 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC----
Confidence 87632 223457999999988887 899999987654331 1122333455778888888842 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
.+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 147 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 147 -SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 2568999999999999999999999999999999999999999999999865 699999999986 5788999999998
Q ss_pred c----CcEEEEEcCC
Q 046196 1066 R----GGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~----Gg~~~y~G~~ 1076 (1436)
. .|+++..|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4899999975
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=331.54 Aligned_cols=221 Identities=19% Similarity=0.235 Sum_probs=177.8
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC---CceeEEEEEC
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYVSGSITIS 913 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~ 913 (1436)
..++++|+++.+.. +.+.+|+|+|++|++||++||+||||||||||+++|+|.... .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 46899999887631 123589999999999999999999999999999999998642 2468999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHcCCcccccccccCCC
Q 046196 914 GYPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVD-SDTRKMFVEEVMELVELNPIREALVGLPG 987 (1436)
Q Consensus 914 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~-~~~~~~~v~~vl~~l~l~~~~~~~~g~~~ 987 (1436)
|.++.. ..+++.++|++|++.+++ .|++||+.|..... ... .+...+.++++++.++|.+-.+..++. .
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~ 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-A 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-C
Confidence 998742 234567999999988774 79999999864322 112 222234467788888875322233332 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+.+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. .+.+.+|+|++|++
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~- 299 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ- 299 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 568999999999999999999999999999999999999999999999875 699999999976 46677999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|..
T Consensus 300 G~i~e~g~~ 308 (329)
T PRK14257 300 GWIEEAGET 308 (329)
T ss_pred CEEEEeCCH
Confidence 799999875
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=323.80 Aligned_cols=221 Identities=23% Similarity=0.272 Sum_probs=177.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.+. +..+|+|+||++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999987763 235899999999999999999999999999999999987632 1479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ...++.++|++|+..+++ .|++||+.+....... .+..+..+.++++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 233567999999988887 8999999876433211 12223345678889999885422111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecC-
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRG- 1067 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~G- 1067 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999865 4899999999986 578899999999964
Q ss_pred ---cEEEEEcCC
Q 046196 1068 ---GEEIYVGPL 1076 (1436)
Q Consensus 1068 ---g~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 789999885
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=316.69 Aligned_cols=197 Identities=25% Similarity=0.335 Sum_probs=162.2
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5899999999999999999999999999999999999988 9999999988765432 24699999999888
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++....+.. . .+....++.+++.+||++..+..+
T Consensus 101 ~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 144 (228)
T PRK10584 101 PTLNALENVELPALLRGES----------S------------------------RQSRNGAKALLEQLGLGKRLDHLP-- 144 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhhCCh--
Confidence 9999999998864322100 0 001123456788999987666554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++++... +++|+.++|+..++ +.+|++++|
T Consensus 145 ---~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 145 ---AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-GTTLILVTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999986432 45666678887776 569999999
Q ss_pred cCCeEEEe
Q 046196 401 SDGQIVYQ 408 (1436)
Q Consensus 401 ~~G~iv~~ 408 (1436)
++|+++++
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=317.27 Aligned_cols=209 Identities=24% Similarity=0.363 Sum_probs=173.4
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+.. ..+.+.+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~---------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGH---------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccC---------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 567777765421 0112569999999999999999999999999999999999876 57999999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 QE------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
.. ..++.++|++|++.+++++|+.||+.+...... ....++..+.++++++.+++.+..+.. ++.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 21 235679999999988899999999998654321 123344455688999999998766665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ..+.+|++++|.+|
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g 217 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999876 4899999999975 46789999999864
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=324.40 Aligned_cols=216 Identities=24% Similarity=0.343 Sum_probs=172.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--------ccceEEEecCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--------PQRTSAYISQNDL 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~~~ 238 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 35999999999999999999999999999999999999875223699999998774321 1346899999998
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 318 (1436)
+++.+||+||+.++..... . ..... .... ..+....++.+++.+||++..|..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~--~-------~~~~~--~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGST--P-------FWRTC--FSWF---------------TREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhcccc--c-------chhhh--cccc---------------cHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 8999999999987632100 0 00000 0000 0011224567889999987766555
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
..|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+. ++++|+.++|+..++.+++|+|+
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 459999999999999999999999999999999999999999999998653 35677778899989999999999
Q ss_pred EecCCeEEEecChhHH
Q 046196 399 LLSDGQIVYQGPRENV 414 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~ 414 (1436)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=317.48 Aligned_cols=193 Identities=27% Similarity=0.349 Sum_probs=159.8
Q ss_pred CccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCc
Q 046196 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 861 ~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 940 (1436)
++++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+|
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~t 100 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELT 100 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCc
Confidence 345679999999999999999999999999999999999876 579999999976421 111233457799
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsg 1020 (1436)
|+||+.+...... ....+..+.++++++.+++.+..++. +..||||||||++|||+|+.+|++|+|||||+|
T Consensus 101 v~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 101 GRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999987654321 22333445678889999998777665 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1021 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1021 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|++ |++++.|
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999998777899999999975 56678999999986 6777654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=327.41 Aligned_cols=209 Identities=25% Similarity=0.376 Sum_probs=175.5
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~ 242 (1436)
.+++|+++|+++++|++++++||+|+||||++++|-.+++++ +|.|+++|+++.+... ++.+|.|||+..+| +
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDtvLF-N 350 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF-N 350 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCcccceeh-h
Confidence 356999999999999999999999999999999999999998 9999999999876543 46799999998865 5
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
.|...|+.|+. |+...+++.+++........ +-.||+++||.||+++
T Consensus 351 Dti~yni~ygr-------------------------~~at~eev~aaa~~aqi~~f--------i~~lP~gy~t~Vgerg 397 (497)
T COG5265 351 DTIAYNIKYGR-------------------------PDATAEEVGAAAEAAQIHDF--------IQSLPEGYDTGVGERG 397 (497)
T ss_pred hhHHHHHhccC-------------------------ccccHHHHHHHHHHhhhhHH--------HHhCchhhhcccchhe
Confidence 69999999873 23333344444333322222 2348999999999998
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
.+ |||||||||+|||+++.+|+||+|||.||+||++|..+|...|++.. .++|+++. .|+..+.--+|.|+||++
T Consensus 398 lk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlvi--ahrlsti~~adeiivl~~ 472 (497)
T COG5265 398 LK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVI--AHRLSTIIDADEIIVLDN 472 (497)
T ss_pred ee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEE--eehhhhccCCceEEEeeC
Confidence 86 99999999999999999999999999999999999999999999976 36777763 334567778999999999
Q ss_pred CeEEEecChhHHHH
Q 046196 403 GQIVYQGPRENVLE 416 (1436)
Q Consensus 403 G~iv~~G~~~~~~~ 416 (1436)
|+|++.|++++++.
T Consensus 473 g~i~erg~h~~ll~ 486 (497)
T COG5265 473 GRIVERGTHEELLA 486 (497)
T ss_pred CEEEecCcHHHHHH
Confidence 99999999999986
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=324.10 Aligned_cols=209 Identities=25% Similarity=0.363 Sum_probs=171.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 35999999999999999999999999999999999999987 9999999988754322 24699999999888899
Q ss_pred CHHHHHHhhhhhc-CCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 244 TVRETLAFSARCQ-GVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 244 TV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
||+||+.++..-. ..... .+ ......++.+++.+||++..++.+
T Consensus 97 tv~~~~~~~~~~~~~~~~~----------------~~---------------~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (265)
T PRK10253 97 TVQELVARGRYPHQPLFTR----------------WR---------------KEDEEAVTKAMQATGITHLADQSV---- 141 (265)
T ss_pred cHHHHHHhCcccccccccC----------------CC---------------HHHHHHHHHHHHHcCCHHHhcCCc----
Confidence 9999998752100 00000 00 001123456788999987666544
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+..++.+++|+|++|++
T Consensus 142 -~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~ 219 (265)
T PRK10253 142 -DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALRE 219 (265)
T ss_pred -ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 569999999999999999999999999999999999999999999998642 255667788999999999999999999
Q ss_pred CeEEEecChhHHH
Q 046196 403 GQIVYQGPRENVL 415 (1436)
Q Consensus 403 G~iv~~G~~~~~~ 415 (1436)
|++++.|+++++.
T Consensus 220 G~i~~~g~~~~~~ 232 (265)
T PRK10253 220 GKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=319.86 Aligned_cols=202 Identities=26% Similarity=0.328 Sum_probs=166.1
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHH
Q 046196 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETL 249 (1436)
Q Consensus 170 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l 249 (1436)
|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999999987 9999999988765332 348999999888999999999
Q ss_pred HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 046196 250 AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGG 329 (1436)
Q Consensus 250 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 329 (1436)
.++..... .. ... .+....++.+++.+||++..++.+ +.||||
T Consensus 76 ~~~~~~~~-~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVL-PD-------LSK------------------------SERRAIVEEHIALVGLTEAADKRP-----GQLSGG 118 (230)
T ss_pred HHHHHhcc-cC-------CCH------------------------HHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHH
Confidence 88632100 00 000 001123456788999987766655 459999
Q ss_pred hhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEec
Q 046196 330 QRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409 (1436)
Q Consensus 330 qkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G 409 (1436)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+.+|+.++|+..++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999987653 3456666889999999999999999999999988
Q ss_pred ChhHH
Q 046196 410 PRENV 414 (1436)
Q Consensus 410 ~~~~~ 414 (1436)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=315.93 Aligned_cols=202 Identities=23% Similarity=0.297 Sum_probs=171.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++.+|+++|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478899887652 2358999999999999999999999999999999999887 5689999999876
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.....++.++|++|++.+++.+|++|++.+....+. .. ..+.++++++.+++.+..+.. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCC-----hhhCCHHHHH
Confidence 543344568999999888888999999987654321 11 123467889999998766665 3579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
|++||++++.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999998888999999999986 68889999999863
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=321.69 Aligned_cols=216 Identities=25% Similarity=0.299 Sum_probs=174.0
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCc---eeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---VSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~---~~G~i~i~g 914 (1436)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467788877652 2359999999999999999999999999999999999876432 479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP----IREALVGL 985 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~ 985 (1436)
.++.. ...++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 1335579999999999999999999987643221 1122333445667777776542 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999864 799999999986 5777899999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=323.38 Aligned_cols=215 Identities=24% Similarity=0.284 Sum_probs=174.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc-
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP- 916 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 916 (1436)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478899887653 2358999999999999999999999999999999999886 568999999987
Q ss_pred ----CCcc---c----ccceEEEeecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 046196 917 ----KNQE---T----FARISGYCEQTDI--HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREAL 982 (1436)
Q Consensus 917 ----~~~~---~----~~~~~gyv~q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~ 982 (1436)
+... . .++.++|++|+.. +.+.+|+.|++.+..... . .....+....++++++.+++.+ ..+..
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999873 567789999987643211 1 1112233456788999999963 44443
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeE
Q 046196 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 983 ~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+...+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4679999999999999999999999999999999999999999999998765 899999999976 466789999
Q ss_pred EEEecCcEEEEEcCC
Q 046196 1062 LLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1062 ~~l~~Gg~~~y~G~~ 1076 (1436)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 789998874
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=362.52 Aligned_cols=208 Identities=25% Similarity=0.398 Sum_probs=167.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|+++++|+.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+| +.|
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~T 421 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLF-NDT 421 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccc-ccc
Confidence 5899999999999999999999999999999999999998 9999999998876653 35799999999755 669
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++|||.++..- +.+.+++.+++...+.+ +.+ -.|++..||.||+.+ +
T Consensus 422 i~~Ni~~~~~~------------------------~~~~~~i~~~l~~~~l~------~~i--~~lp~gldt~i~~~g-~ 468 (571)
T TIGR02203 422 IANNIAYGRTE------------------------QADRAEIERALAAAYAQ------DFV--DKLPLGLDTPIGENG-V 468 (571)
T ss_pred HHHHHhcCCCC------------------------CCCHHHHHHHHHHcChH------HHH--HhCcCcccceecCCC-C
Confidence 99999876310 11122232322221111 111 236778899999874 5
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.||||||||++||||++.+|+|++||||||+||..++..|.+.|++.. .++ ++|.++|+. +..+.||+|++|++|+
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~-tiIiitH~~-~~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGR-TTLVIAHRL-STIEKADRIVVMDDGR 544 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCC-EEEEEehhh-HHHHhCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999863 234 444466654 6678999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++..|+++++.+
T Consensus 545 i~~~g~~~~l~~ 556 (571)
T TIGR02203 545 IVERGTHNELLA 556 (571)
T ss_pred EEeeCCHHHHHH
Confidence 999999999864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.42 Aligned_cols=213 Identities=21% Similarity=0.266 Sum_probs=173.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC--ceeEEEEECCc
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YVSGSITISGY 915 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~ 915 (1436)
.++++|+++.++ +.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 578889887651 24899999999999999999999999999999999997631 17899999998
Q ss_pred cCCcccc-cceEEEeecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc---ccccccCCCCC
Q 046196 916 PKNQETF-ARISGYCEQTDI--HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI---REALVGLPGVS 989 (1436)
Q Consensus 916 ~~~~~~~-~~~~gyv~q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~---~~~~~g~~~~~ 989 (1436)
++..... ++.++|++|++. +.+..|+.+++.+.+.... ... ..+.++++++.+++.+. .+.. +.
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 8753322 356999999974 4567899999876443221 111 12457889999999762 3333 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-G 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999976 46778999999986 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 218 ~i~~~~~~ 225 (254)
T PRK10418 218 RIVEQGDV 225 (254)
T ss_pred EEEEecCH
Confidence 89888874
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=336.99 Aligned_cols=200 Identities=26% Similarity=0.441 Sum_probs=170.0
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-------ccceEEEecCCCCcCCCCC
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-------PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~~~~~lT 244 (1436)
|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999998 999999998875321 2356999999999999999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.|+.+... .. +....++.+++.+||++..++.+ .
T Consensus 92 v~enl~~~~~~~~------------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR------------PS------------------------ERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC------------hh------------------------HHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998743110 00 01123466789999987777554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999986532 4566668899999999999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+++++..
T Consensus 210 i~~~g~~~~~~~ 221 (354)
T TIGR02142 210 VAAAGPIAEVWA 221 (354)
T ss_pred EEEECCHHHHhc
Confidence 999999988753
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=359.31 Aligned_cols=207 Identities=25% Similarity=0.341 Sum_probs=166.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.++. .|
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~t 404 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-DT 404 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-cc
Confidence 5899999999999999999999999999999999999998 9999999998876543 357999999988665 69
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++|||.++... .+.+++.+++...+.+. ....|+++.||.+|+.+ .
T Consensus 405 i~~Ni~~~~~~-------------------------~~~~~~~~~~~~~~l~~--------~i~~lp~gl~t~~~~~g-~ 450 (569)
T PRK10789 405 VANNIALGRPD-------------------------ATQQEIEHVARLASVHD--------DILRLPQGYDTEVGERG-V 450 (569)
T ss_pred HHHHHhcCCCC-------------------------CCHHHHHHHHHHcCCHH--------HHHhCcCcccceecCCC-C
Confidence 99999886311 11111222221111110 12357888899999864 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++||||++.+|++++|||||++||+.++..+.+.|+++. .++| ++.++|+. +....+|+|++|++|+
T Consensus 451 ~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t-ii~itH~~-~~~~~~d~i~~l~~G~ 526 (569)
T PRK10789 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRT-VIISAHRL-SALTEASEILVMQHGH 526 (569)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCE-EEEEecch-hHHHcCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999863 2445 44466655 4567899999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++.+|+++++.+
T Consensus 527 i~~~g~~~~l~~ 538 (569)
T PRK10789 527 IAQRGNHDQLAQ 538 (569)
T ss_pred EEEecCHHHHHH
Confidence 999999998864
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=319.16 Aligned_cols=212 Identities=19% Similarity=0.285 Sum_probs=167.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|....+|+|.++|+++.+... ++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 358999999999999999999999999999999999975311138999999998765322 356999999988776 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++....+.... . ......++.+++.+||........ ++.+
T Consensus 94 tv~eni~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKN--------K------------------------DEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccC--------h------------------------HHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 999999986433211000 0 001122456788888853211111 2345
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+..++.+.+|+|++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 67999999999999999999999999999999999999999999998742 456666889999999999999999999
Q ss_pred eEEEecChhHHH
Q 046196 404 QIVYQGPRENVL 415 (1436)
Q Consensus 404 ~iv~~G~~~~~~ 415 (1436)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999988764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=320.03 Aligned_cols=210 Identities=18% Similarity=0.256 Sum_probs=166.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc---CCCCCcceEEEECCccCCCcc-----ccceEEEecCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL---GKDLKFSGRVTYNGHGMEEFV-----PQRTSAYISQNDL 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~---~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~~~ 238 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.. ++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 35899999999999999999999999999999999973 331 13899999999875421 1356999999988
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 318 (1436)
+++ .||+||+.++.+..+.... ......++++++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhhhh
Confidence 776 6999999886433211000 001123456788888865322222
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
+..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|+++
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--D-YTIVIVTHNMQQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHhhCCEEE
Confidence 234557999999999999999999999999999999999999999999999742 3 566668899889999999999
Q ss_pred EecCCeEEEecChhHHH
Q 046196 399 LLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~ 415 (1436)
+|++|+++++|+++++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=321.83 Aligned_cols=210 Identities=18% Similarity=0.256 Sum_probs=164.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG--KDLKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 48999999999999999999999999999999999986 2111389999999887421 1135699999998777
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ +||+||+.++.+...... . .+....++.+++.+||........ +
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS---------R------------------------AEMDERVEWALTKAALWNEVKDKL-H 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC---------H------------------------HHHHHHHHHHHHHcCCChhhHHHH-h
Confidence 6 899999988643211000 0 001123456778888743211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+....||||||||++||+||+.+|++|+|||||+|||..++..+.+.|+++.. +++|+.++|+..++.+++|++++|
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ---DYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998742 356667889888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|+++..|+.+++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988774
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=328.07 Aligned_cols=205 Identities=18% Similarity=0.299 Sum_probs=166.6
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC----c----cccceEEEecCCCC-
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE----F----VPQRTSAYISQNDL- 238 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~~~- 238 (1436)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 4899999999999999999999999999999999999987 9999999987642 1 12356999999963
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTM 317 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 317 (1436)
.+...||+||+.|+....+.. .. +....++.+++.+||+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN----------KQ------------------------EAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhHhcCC
Confidence 234569999998864321100 00 0011245578888995 455544
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.++||+|
T Consensus 148 ~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 P-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred h-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999988653 3556666889998999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=315.24 Aligned_cols=195 Identities=22% Similarity=0.357 Sum_probs=161.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-----cccceEEEecCCCCcCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~~ 241 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 35999999999999999999999999999999999999987 99999999877421 11357999999998888
Q ss_pred CCCHHHHHHhhhh-hcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 242 EMTVRETLAFSAR-CQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 242 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
.+||+||+.++.. ..+.. . .+....++.+++.+||++..++.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 133 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------K------------------------AEAEERALELLEKVGLADKADAYP-- 133 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhhhCc--
Confidence 9999999988642 11100 0 001123456788899987666554
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+++|+.++|+..++.+++|+|++|
T Consensus 134 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 134 ---AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999864 3456666889999999999999999
Q ss_pred cCCeE
Q 046196 401 SDGQI 405 (1436)
Q Consensus 401 ~~G~i 405 (1436)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=315.99 Aligned_cols=202 Identities=22% Similarity=0.366 Sum_probs=168.8
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHHHHH
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999987 9999999998754322 356999999998898999999998
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
++... .... .+ .....++.+++.+||++..++.+ +.|||||
T Consensus 94 ~~~~~-~~~~--------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLKL--------NA-------------------------AQREKLHAIARQMGIEDLLARLP-----GQLSGGQ 134 (232)
T ss_pred ccccc-ccCC--------CH-------------------------HHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHH
Confidence 75321 0000 00 01123466788999987777655 4699999
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecC
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGP 410 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~ 410 (1436)
||||+||+|++.+|++++|||||+|||..++..+.+.|+++.+. .+++++.++|+..++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE-RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999987653 24566668899989999999999999999999999
Q ss_pred hhHHHH
Q 046196 411 RENVLE 416 (1436)
Q Consensus 411 ~~~~~~ 416 (1436)
.+++.+
T Consensus 214 ~~~~~~ 219 (232)
T PRK10771 214 TDELLS 219 (232)
T ss_pred HHHHHh
Confidence 887753
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=322.56 Aligned_cols=219 Identities=23% Similarity=0.281 Sum_probs=177.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999988763 245899999999999999999999999999999999987631 4689999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 915 YPKNQ----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 915 ~~~~~----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
.++.. ...++.++|++|+..+++ .|++||+.+..... ...+.++....+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234567999999988887 89999998764322 112233334456788899988643221111 12568
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999976 57788999999996 789
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 998875
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=315.22 Aligned_cols=194 Identities=30% Similarity=0.436 Sum_probs=160.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCC-cCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDL-HIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~-~~~~ 242 (1436)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 45999999999999999999999999999999999999987 9999999988754321 356899999964 4678
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.++....+.. . .+....++.+++.+||++..++.+
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------E------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 99999998864321100 0 001123456788899987666544
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.. .+++|+.++|+..++..+||+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA--EGKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998865 256677788999999999999999999
Q ss_pred Ce
Q 046196 403 GQ 404 (1436)
Q Consensus 403 G~ 404 (1436)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=321.45 Aligned_cols=211 Identities=20% Similarity=0.312 Sum_probs=166.1
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|. ...+|+|.++|+++... ..++.++|++|++..+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 4899999999999999999999999999999999998741 01289999999887531 1235689999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ .||+||+.|+....+.... + .+....++.+++.+||.+...... +
T Consensus 113 ~-~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 158 (267)
T PRK14235 113 P-KSIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRL-H 158 (267)
T ss_pred C-CcHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 4999999987543211000 0 000123456788888864211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++..++|++++|
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998753 3 56666889888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|+++.+|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 236 HLGNLVEVGDTEKMF 250 (267)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=313.39 Aligned_cols=199 Identities=22% Similarity=0.287 Sum_probs=164.4
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 45667766542 2458999999999999999999999999999999999987 56899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 919 Q--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 919 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
. ...++.++|++|++.+++.+|+.|++.+...... . ...+.++++++.+++.+..++. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999988999999999988654321 1 1234578899999998766654 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
||++||++|+++|++++|||||+|||+.+...+++.|++++++|+|||+++|+++ .+-..-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999976 344444555554
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=356.16 Aligned_cols=218 Identities=27% Similarity=0.335 Sum_probs=181.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 478888887652 2459999999999999999999999999999999999986 5689999999876
Q ss_pred Cccc----ccceEEEeecCCCCCCCCcHHHHHHHHHHhc--C-CC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 918 NQET----FARISGYCEQTDIHSPHVTVYESLVYSAWLR--L-PP-EVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 918 ~~~~----~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~--~-~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.... .++.++|++|+..+++.+||+|++.+..... . .. ..+.++..+.++++++.+++.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 4311 2346999999998899999999998653210 0 00 0122334456889999999987777653 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ .+...+|++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999878999999999976 56778999999996 78
Q ss_pred EEEEcCCC
Q 046196 1070 EIYVGPLG 1077 (1436)
Q Consensus 1070 ~~y~G~~~ 1077 (1436)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (510)
T PRK09700 223 SVCSGMVS 230 (510)
T ss_pred Eeeecchh
Confidence 89998764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=316.60 Aligned_cols=205 Identities=27% Similarity=0.390 Sum_probs=171.1
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 5999999999999999999999999999999999999987 9999999988764333 35799999999888889999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.+..+..+.. .. .....++.+++.+||.+..++.+ +.|
T Consensus 91 enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (237)
T TIGR00968 91 DNIAFGLEIRKHP----------KA------------------------KIKARVEELLELVQLEGLGDRYP-----NQL 131 (237)
T ss_pred HHHHhHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHhhCCh-----hhC
Confidence 9998864422100 00 00112356788889976666554 469
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv 406 (1436)
|||||||++||++++.+|++++|||||+|||..+...+.+.|+++.. ..+.+++.++|...++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998754 22456666788888899999999999999999
Q ss_pred EecChhHHH
Q 046196 407 YQGPRENVL 415 (1436)
Q Consensus 407 ~~G~~~~~~ 415 (1436)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (237)
T TIGR00968 211 QIGSPDEVY 219 (237)
T ss_pred EecCHHHHH
Confidence 999988774
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=320.62 Aligned_cols=210 Identities=19% Similarity=0.270 Sum_probs=167.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 34 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 113 (267)
T PRK14237 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPF 113 (267)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccc
Confidence 5899999999999999999999999999999999998641 11389999999887532 1145699999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ .||+||+.++.+..+... + ......++.+++.+||.+..+... +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~i~~~~-~ 158 (267)
T PRK14237 114 A-KSIYENITFALERAGVKD---------K------------------------KVLDEIVETSLKQAALWDQVKDDL-H 158 (267)
T ss_pred c-ccHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCCchhhhhh-c
Confidence 6 699999988643221100 0 001123445678888864322222 3
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.++.||||||||++|||+++.+|++++|||||+|||+.+...+.+.|+++.. +.+|+.++|+..++.++||++++|
T Consensus 159 ~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK---NYTIIIVTHNMQQAARASDYTAFF 235 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhcCEEEEE
Confidence 45567999999999999999999999999999999999999999999998742 356677888888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 236 YLGDLIEYDKTRNIF 250 (267)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998874
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=312.63 Aligned_cols=184 Identities=27% Similarity=0.340 Sum_probs=159.2
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc--ccccceEEEeecCCCCCCCCcH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ--ETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|+..+++.+|+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 458999999999999999999999999999999999986 568999999987532 2345679999999888889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
+|++.+.... . ..+.++++++.+++.+..++. +..||||||||++|||+|+.+|++|+|||||+||
T Consensus 91 ~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 91 LENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999874311 1 123468899999998766654 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
|+.+...+.+.|+++.++|+|+|+++|++. +....+|+++++
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999998777999999999976 577788998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=318.91 Aligned_cols=210 Identities=20% Similarity=0.330 Sum_probs=164.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG--KDLKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|+++++||+++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 58999999999999999999999999999999999853 4222389999999887431 1245699999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ +||+||+.++....+.... ......++.+++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK---------------------------------QVLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhHHHHH-h
Confidence 6 8999999986433211000 000112345677777643211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.++.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+.+|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998743 3 56667889988999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=320.60 Aligned_cols=211 Identities=21% Similarity=0.313 Sum_probs=166.5
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL--KFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|+++++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 58999999999999999999999999999999999987411 1389999999876421 1235699999998889
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.++....+... . ......++.+++.+||........ +
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRN---------K------------------------KDLDELVEKSLRGANLWNEVKDRL-D 143 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhhhHh-h
Confidence 99999999988653221000 0 001123455678888742111111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..+..|||||||||+||||++.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998743 3 56666889999999999999999
Q ss_pred c------CCeEEEecChhHHH
Q 046196 401 S------DGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~------~G~iv~~G~~~~~~ 415 (1436)
+ +|++++.|+++++.
T Consensus 221 ~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ecccCCCCceEEecCCHHHHH
Confidence 6 89999999998874
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=350.28 Aligned_cols=123 Identities=24% Similarity=0.308 Sum_probs=99.5
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCcce
Q 046196 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-REALVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 1013 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~LSgGqrqRl~iA~aL~~---~p~ill 1013 (1436)
++||.|.+.|...+. .. ....++++.+||... .+.. ...||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467777777755331 11 123577888898653 3333 45799999999999999997 599999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-----RGGEEIYVGPL 1076 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~y~G~~ 1076 (1436)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ....+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 446799999994 57899999975
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=352.17 Aligned_cols=211 Identities=23% Similarity=0.368 Sum_probs=174.7
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|++|+++ +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|++||.+
T Consensus 472 ~~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEE
Confidence 4699999999874 12359999999999999999999999999999999999987 579999999988
Q ss_pred CC---cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KN---QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~---~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
+. ...+++.+|||+|++.+++ .|++||+.+... ++.+.+ .+.++++..++.+. .|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVSQD----EIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCCHH----HHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 64 3456788999999998876 499999986421 122222 24556666655432 35556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+.+||||||||++|||||+++|+||+||||||+||+.+...+++.|+++ +|+|+|+++|+++ ....+|+|++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999985 4799999999975 5678999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 789999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=320.15 Aligned_cols=219 Identities=20% Similarity=0.261 Sum_probs=173.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+|++|++|++++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 477888877652 235899999999999999999999999999999999987632 1369999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ...++.++|++|+..+++. |++||+.+....+.. . ..+...+.++++++.+++.+....... ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT-T-AQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC-C-hhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 1345679999999888875 999999886543311 1 112223456777888887532111111 1256
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ .+.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 899999999999999999999999999999999999999999999985 5899999999976 57788999999986 68
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 8888874
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=318.15 Aligned_cols=212 Identities=18% Similarity=0.259 Sum_probs=167.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCc-----cccceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG--KDLKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1436)
.++|+|+|++|++||+++|+||||||||||+++|+|.++ |+...+|+|.++|+++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999986 3111389999999887432 124569999999988
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.++.+..+... .. +....++.+++.+||........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVN---------RS------------------------EADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCchhhhHHh-
Confidence 999999999987643211000 00 00113455677888754211111
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+..+..||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.+ + ++|+.++|+..++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEE
Confidence 133457999999999999999999999999999999999999999999999853 3 5666688999899999999999
Q ss_pred ecCCeEEEecChhHHH
Q 046196 400 LSDGQIVYQGPRENVL 415 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~ 415 (1436)
|++|+++..|+++++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 220 FYMGDLVECGETKKIF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=318.40 Aligned_cols=211 Identities=19% Similarity=0.304 Sum_probs=166.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCcc-----ccceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEEFV-----PQRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~~~~ 239 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+|. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35899999999999999999999999999999999998751 113899999999875321 13569999999887
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++ +||+||+.|+....+.... .+....++.+++.+||.+......
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 141 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDL- 141 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-
Confidence 76 8999999987543221000 000112345677887742111111
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+..++.||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.. + .+++.++|+..++.+++|++++
T Consensus 142 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~ 218 (251)
T PRK14270 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEE
Confidence 234557999999999999999999999999999999999999999999998753 3 5666678888899999999999
Q ss_pred ecCCeEEEecChhHHH
Q 046196 400 LSDGQIVYQGPRENVL 415 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~ 415 (1436)
|++|++++.|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 219 FLMGDLIEFNKTEKIF 234 (251)
T ss_pred EECCeEEEeCCHHHHh
Confidence 9999999999998874
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=321.99 Aligned_cols=204 Identities=21% Similarity=0.272 Sum_probs=168.9
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---ccceEEEecCCCC-cCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---PQRTSAYISQNDL-HIGEM 243 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~-~~~~l 243 (1436)
++|+|+|+++++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 5899999999999999999999999999999999999998 999999998875422 2356999999963 67788
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||.||+.++.+..+.. .. +....++.+++.+||.+..++.+
T Consensus 98 tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~----- 138 (277)
T PRK13642 98 TVEDDVAFGMENQGIP----------RE------------------------EMIKRVDEALLAVNMLDFKTREP----- 138 (277)
T ss_pred CHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhCCc-----
Confidence 9999998764321110 00 00123466788899987666544
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
..|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|+.++|+..++. .+|+|++|++|
T Consensus 139 ~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tiil~sH~~~~~~-~~d~i~~l~~G 216 (277)
T PRK13642 139 ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK-YQLTVLSITHDLDEAA-SSDRILVMKAG 216 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999988652 2556666888888875 69999999999
Q ss_pred eEEEecChhHHH
Q 046196 404 QIVYQGPRENVL 415 (1436)
Q Consensus 404 ~iv~~G~~~~~~ 415 (1436)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (277)
T PRK13642 217 EIIKEAAPSELF 228 (277)
T ss_pred EEEEeCCHHHHh
Confidence 999999998875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=314.95 Aligned_cols=200 Identities=28% Similarity=0.414 Sum_probs=160.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcC--CCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI--GEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~--~~lT 244 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 45999999999999999999999999999999999999988 9999999987642 345799999997653 3489
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.++..... ..+.. .. ......++.+++.+||++..++.+ .
T Consensus 87 v~e~l~~~~~~~~--~~~~~---~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 131 (213)
T cd03235 87 VRDVVLMGLYGHK--GLFRR---LS-------------------------KADKAKVDEALERVGLSELADRQI-----G 131 (213)
T ss_pred HHHHHHhcccccc--ccccC---CC-------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----c
Confidence 9999988643110 00000 00 001123466788999987666554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+++++.++|+..++.+++|+|++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 5999999999999999999999999999999999999999999999864 3556777889999999999999999886
Q ss_pred EEEec
Q 046196 405 IVYQG 409 (1436)
Q Consensus 405 iv~~G 409 (1436)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=320.19 Aligned_cols=219 Identities=24% Similarity=0.262 Sum_probs=174.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCc---eeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---VSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~---~~G~i~i~g 914 (1436)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+.+ .+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478888887652 2359999999999999999999999999999999999754222 489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. ....+..+.++++++.+++.+....... ..+.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 2335679999999888874 999999987544311 1222334457788888887531111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999875 689999999976 46678999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 8888875
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=354.34 Aligned_cols=210 Identities=28% Similarity=0.397 Sum_probs=174.5
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|++|+++. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 46999999998742 22469999999999999999999999999999999999987 579999999998
Q ss_pred CC---cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KN---QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~---~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
+. ...+++.+|||+|++.+++ .|++||+.+.. | +.+.+ .+.++++..++.+. .|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 64 3456788999999988875 69999997531 1 22222 24566666666543 34555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+.+||||||||++|||||+++|+||+||||||+||+.+...+++.|++ .++|+|+++|+++ ....+|+|++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999986 4899999999975 5677999999986
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 799999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=320.43 Aligned_cols=218 Identities=18% Similarity=0.214 Sum_probs=175.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.+.++++++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 8 ~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 74 (261)
T PRK14263 8 VMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG 74 (261)
T ss_pred eEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC
Confidence 46666666554 2346999999999999999999999999999999999987531 2689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ..+++.++|++|+..++ .+|+.||+.+....+. .. .+..+.++++++.+++.+..+...+ ...+
T Consensus 75 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 148 (261)
T PRK14263 75 QDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---YK-GDLGDRVKHALQGAALWDEVKDKLK-VSGL 148 (261)
T ss_pred EeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---ch-HHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87632 13456799999998776 5999999988754331 11 2233467888999998643222222 1356
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe----
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK---- 1065 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~---- 1065 (1436)
.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~ 226 (261)
T PRK14263 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDIS 226 (261)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccc
Confidence 899999999999999999999999999999999999999999999985 4799999999986 5778899999996
Q ss_pred ---cCcEEEEEcCC
Q 046196 1066 ---RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ---~Gg~~~y~G~~ 1076 (1436)
++|+++..|+.
T Consensus 227 ~~~~~G~i~~~g~~ 240 (261)
T PRK14263 227 QGTRTGYLVEMGPT 240 (261)
T ss_pred cccCCceEEEeCCH
Confidence 45899999975
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=357.40 Aligned_cols=207 Identities=21% Similarity=0.318 Sum_probs=165.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|+++++|+.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++.++ +.|
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~t 424 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLF-NRS 424 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccC-ccc
Confidence 4899999999999999999999999999999999999998 9999999998876543 46799999998866 579
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
++|||.++... .+.+++.+++...+.+ .. ...+++..||.+|+.+ .
T Consensus 425 i~~Ni~~~~~~-------------------------~~~~~~~~a~~~~~~~------~~--i~~l~~g~~t~~~~~~-~ 470 (585)
T TIGR01192 425 IRENIRLGREG-------------------------ATDEEVYEAAKAAAAH------DF--ILKRSNGYDTLVGERG-N 470 (585)
T ss_pred HHHHHhcCCCC-------------------------CCHHHHHHHHHHhCcH------HH--HHhccccccchhcCCC-C
Confidence 99999886321 1111222222111111 01 2236677789998764 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++|||||+.+|++++|||||||||+.++..+.+.|++.. . +.+++.++|..+.+ +.+|+|++|++|+
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~-~~tvI~isH~~~~~-~~~d~i~~l~~G~ 546 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--K-NRTTFIIAHRLSTV-RNADLVLFLDQGR 546 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--C-CCEEEEEEcChHHH-HcCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999998763 2 44555567766554 6799999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (585)
T TIGR01192 547 LIEKGSFQELIQ 558 (585)
T ss_pred EEEECCHHHHHH
Confidence 999999998864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=312.30 Aligned_cols=195 Identities=23% Similarity=0.337 Sum_probs=163.0
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHHHHH
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999987 9999999988754332 356999999999888999999998
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
++..... .. .+ .....++.+++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~-~~--------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-KL--------TA-------------------------EDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred ccccccc-Cc--------cH-------------------------HHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7632110 00 00 01123456788999987766554 4699999
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEec
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G 409 (1436)
|||++||+|++.+|++++|||||+|||..++..+.+.|+++... .+.+|+.++|+..++.+++|++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999987642 2456666899999999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=315.63 Aligned_cols=204 Identities=26% Similarity=0.439 Sum_probs=171.5
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
+|+|+|++|+|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 9999999998765322 357999999998898999999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+.++....+... . +....++.+++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------K------------------------EIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9988643221000 0 01112355788899987776655 4699
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
|||||||+||+|++.+|++++|||||+|||+.++.++.+.|+++.... +++++.++|+.+++.+.+|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999976532 4566668888889999999999999999999
Q ss_pred ecChhHHH
Q 046196 408 QGPRENVL 415 (1436)
Q Consensus 408 ~G~~~~~~ 415 (1436)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=324.72 Aligned_cols=215 Identities=21% Similarity=0.306 Sum_probs=173.5
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC--C-CceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 914 (1436)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999887752 2348999999999999999999999999999999999743 1 13689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP----IREALVGL 985 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~ 985 (1436)
.++.. ...++.++|++|++.+++. ||.||+.+....+.. .+.....+.+.++++.+++.. ..+.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 178 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDK---- 178 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhC----
Confidence 87532 1245679999999888775 999999986533211 112223455678888888742 2232
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
.+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 179 -~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 179 -NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 2468999999999999999999999999999999999999999999999865 689999999986 5677899999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 6 788888874
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=387.16 Aligned_cols=206 Identities=22% Similarity=0.278 Sum_probs=170.2
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++|+|||.+||+|++|||||||+++|.|+++|+ +|+|.+||.++++... ++.++||||++.+|. .|
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~-GT 1328 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFS-GT 1328 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECCCCcccc-cc
Confidence 4899999999999999999999999999999999999998 9999999999987654 467999999998765 59
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|||||..+.. .+.+++.++++..+.+.. +-.|+.+.||.||+++.
T Consensus 1329 IreNLd~~~~--------------------------~tdeei~~Al~~a~l~~~--------I~~lp~GLdt~Vge~G~- 1373 (1622)
T PLN03130 1329 VRFNLDPFNE--------------------------HNDADLWESLERAHLKDV--------IRRNSLGLDAEVSEAGE- 1373 (1622)
T ss_pred HHHHhCcCCC--------------------------CCHHHHHHHHHHcCcHHH--------HHhCccccCccccCCCC-
Confidence 9999986521 112233344333332211 22467888999998655
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. ++.|++++.|.. ++...||+|+||++|+
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~---~~~TvI~IAHRL-~tI~~~DrIlVLd~G~ 1449 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF---KSCTMLIIAHRL-NTIIDCDRILVLDAGR 1449 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC---CCCEEEEEeCCh-HHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999853 345566576765 4556799999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
|+++|+++++++
T Consensus 1450 IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1450 VVEFDTPENLLS 1461 (1622)
T ss_pred EEEeCCHHHHHh
Confidence 999999999974
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=322.50 Aligned_cols=215 Identities=20% Similarity=0.258 Sum_probs=173.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC--C-CceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 914 (1436)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999987653 2359999999999999999999999999999999999742 1 14689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP----IREALVGL 985 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~ 985 (1436)
.++.. ...++.++|++|++.+++. |++||+.+...... ........+.+++.++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1235679999999888775 99999987643221 1112223345677888888752 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999865 689999999976 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 6 789998874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=319.20 Aligned_cols=210 Identities=19% Similarity=0.304 Sum_probs=165.1
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG--KDLKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|++|++||+++|+||||||||||+++|+|.++ |+...+|+|.++|+++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 58999999999999999999999999999999999987 3212389999999987421 1235699999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+. ||+||+.|+.+..+... .. +....++.+++.+||.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKN---------KK------------------------KLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 99999988643221100 00 00112345677778753211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.. +.+++.++|+..++.+.+|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999998742 356666888888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998874
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=319.45 Aligned_cols=215 Identities=25% Similarity=0.347 Sum_probs=173.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC--C-ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 914 (1436)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478889887652 23599999999999999999999999999999999998752 1 3689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP----IREALVGL 985 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~ 985 (1436)
.++.. ...++.++|++|++.+++ .||+||+.+...... ....+...+.++++++.+++.. ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR---- 143 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc----
Confidence 87532 123567999999988776 799999987643321 1112223345778888888842 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
.+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ ++.+.+|++++|+
T Consensus 144 -~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 144 -NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 2468999999999999999999999999999999999999999999999854 689999999976 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=352.03 Aligned_cols=219 Identities=21% Similarity=0.340 Sum_probs=179.3
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ ++.+|+|||+++++||++||+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 46777776652 24599999999999999999999999999999999998764336899999998764
Q ss_pred ccc----ccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCC
Q 046196 919 QET----FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNPIR-EALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~~~----~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~~~-~~~~g~~~~~~LS 992 (1436)
... .++.+||++|++.+++.+||+|++.+........ ....++..+.++++++.+++.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 311 2356899999998899999999998764322111 122233445678999999997654 333 35799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ .+.+.+|++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999976 56778999999996 68888
Q ss_pred EcCCC
Q 046196 1073 VGPLG 1077 (1436)
Q Consensus 1073 ~G~~~ 1077 (1436)
.|+..
T Consensus 222 ~~~~~ 226 (500)
T TIGR02633 222 TKDMS 226 (500)
T ss_pred ecCcc
Confidence 88764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=324.12 Aligned_cols=217 Identities=24% Similarity=0.400 Sum_probs=173.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. +++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 578889887652 12458999999999999999999999999999999999977 5799999999876
Q ss_pred CcccccceEEEeecCCCCC--CCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 918 NQETFARISGYCEQTDIHS--PHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~--~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
.....++.++|++|++.+. ...+++|++.+....... .........+.++++++.+++.+..++. +..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHH
Confidence 4322234689999987542 234788888653211000 0011122334567889999998777665 3579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 995 qrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999976 577889999776 4 7899988
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 224 ~~ 225 (272)
T PRK15056 224 PT 225 (272)
T ss_pred CH
Confidence 75
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=322.40 Aligned_cols=207 Identities=21% Similarity=0.262 Sum_probs=169.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCC--cCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDL--HIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~--~~~ 241 (1436)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 45999999999999999999999999999999999999998 9999999988753221 246999999864 567
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-ccccccccC
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTMVGD 320 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 320 (1436)
.+||.|++.+..+.... ... .+....++.+++.+||. +..++.+
T Consensus 103 ~~tv~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTD---------LEP------------------------EQREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccC---------CCH------------------------HHHHHHHHHHHHHcCCChHHHhcCc--
Confidence 88999999876432100 000 00112345678999994 5555443
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++.+. .+++|+.++|+..++..+||++++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 3566666889999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=308.11 Aligned_cols=178 Identities=28% Similarity=0.355 Sum_probs=150.1
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-----ccccceEEEeecCCC-CCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-----ETFARISGYCEQTDI-HSP 937 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~q~~~-~~~ 937 (1436)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 459999999999999999999999999999999999887 569999999987631 123567899999863 333
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 046196 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1017 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP 1017 (1436)
..||+||+.+..... ..+.++..+.++++++.+++.+..++. +..||||||||++|||+|+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999998865432 123333445678899999998776665 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1018 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1018 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
|+|||+.++..+.+.|++++++|+|||+++|+++
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=352.64 Aligned_cols=211 Identities=22% Similarity=0.323 Sum_probs=179.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++.+|+|+||+|++|+++||+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488899987763 2459999999999999999999999999999999999986 5699999999876
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQE---T-FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~~---~-~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
... . .++.+||++|++.+++.+||+|++.+.... ..+.++.++++++.+++.+..+.. +..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCH
Confidence 421 1 124589999999999999999999874310 122345678899999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+...+|++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999976 46788999999996 688899
Q ss_pred cCCC
Q 046196 1074 GPLG 1077 (1436)
Q Consensus 1074 G~~~ 1077 (1436)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 8863
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=296.60 Aligned_cols=204 Identities=25% Similarity=0.388 Sum_probs=179.5
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCC
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPH 938 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~ 938 (1436)
+.+.+|+++|..|++|.+++|+|||||||||||.+++++.+ ..+|+|+++|.++.. ..+++.++..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 45779999999999999999999999999999999998876 579999999998643 4567778888998888889
Q ss_pred CcHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 046196 939 VTVYESLVYSAWLRLPP--EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016 (1436)
Q Consensus 939 lTv~e~l~~~~~l~~~~--~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDE 1016 (1436)
+||+|-+.|+. .|. ....++.+..+++.++.++|+++.|... .+||||||||.-||+.|+++.+.++|||
T Consensus 90 lTV~dLv~FGR---fPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 90 LTVRDLVGFGR---FPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred eEHHHHhhcCC---CcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecC
Confidence 99999999873 343 2334556677999999999999999874 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCC
Q 046196 1017 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLG 1077 (1436)
Q Consensus 1017 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~ 1077 (1436)
|.++||...+..+|+.||+++++ |+|||++.||.+. .-...|+|+-|++ |+++..|++.
T Consensus 162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~ 221 (252)
T COG4604 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPD 221 (252)
T ss_pred cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHH
Confidence 99999999999999999999876 9999999999874 4557899999996 7999999973
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=317.76 Aligned_cols=219 Identities=24% Similarity=0.302 Sum_probs=172.0
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCc---eeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---VSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~---~~G~i~i~g 914 (1436)
.+.++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|..+..+ .+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478888887652 2358999999999999999999999999999999999753112 489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ...++.++|++|+..+++ .|++||+.+....+.. ...+...+.+.+.++.+++......... ..+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLH-ESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHh-cCcc
Confidence 87632 134567999999988887 6999999886543311 1122223345677787776421111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ .+.+.+|++++|++ |+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GN 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999865 589999999986 57788999999986 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14255 225 LIEFADT 231 (252)
T ss_pred EEEeCCH
Confidence 8888874
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=317.40 Aligned_cols=211 Identities=20% Similarity=0.332 Sum_probs=166.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCc-----cccceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 35899999999999999999999999999999999998741 11389999999877532 123569999999887
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++ +||+||+.++....+.... ......++..++.+|+.+..+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK---------------------------------HKLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCchhHHH-H
Confidence 76 8999999886432211000 00011234567777775321111 1
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
++.+++||||||||++||+|++.+|++++|||||+|||..+...+.+.|+++.. + ++++.++|+..++.+++|+|++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEEE
Confidence 344567999999999999999999999999999999999999999999998743 3 5666688888889999999999
Q ss_pred ecCCeEEEecChhHHH
Q 046196 400 LSDGQIVYQGPRENVL 415 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~ 415 (1436)
|++|+++..|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988874
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=307.27 Aligned_cols=197 Identities=26% Similarity=0.412 Sum_probs=170.9
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-------ccceEEEecCCCCcCCCC
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-------PQRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~~~~~l 243 (1436)
=++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+.. .+|++|||+|+..+||.+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 3677777776899999999999999999999999999 999999998664321 247899999999999999
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+-||.|+...- .....|++.+.||++|..+ +++
T Consensus 92 tVrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~-----R~P 126 (352)
T COG4148 92 TVRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLD-----RYP 126 (352)
T ss_pred EEecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHh-----hCC
Confidence 9999999985321 0112366788999999887 455
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
..|||||||||+|||||++.|++|+||||.+.||-....+|+-.|.++.+.. +.-|+.++|...|+.+++|+|++|++|
T Consensus 127 ~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCC
Confidence 6799999999999999999999999999999999999999999999987654 455777899999999999999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
++...|+.+++..
T Consensus 206 kV~A~g~~e~v~~ 218 (352)
T COG4148 206 KVKASGPLEEVWG 218 (352)
T ss_pred eEEecCcHHHHhc
Confidence 9999999998854
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=321.05 Aligned_cols=223 Identities=23% Similarity=0.320 Sum_probs=177.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+.... .+ + ...++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~-~~--~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG-LS--G-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc-cc--c-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67888877653100 00 0 0012469999999999999999999999999999999999876 57999999998764
Q ss_pred cc------cccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046196 919 QE------TFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVS 989 (1436)
Q Consensus 919 ~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~ 989 (1436)
.. ..++.++|++|+. .+.+..|+.|++.+..... ......+....++++++.+++. ...+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 21 2356799999997 3667899999987643211 1122334445688999999996 455544 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+.+.+|++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999976 56778999999985 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
++++.|+.
T Consensus 229 ~i~~~g~~ 236 (268)
T PRK10419 229 QIVETQPV 236 (268)
T ss_pred EEeeeCCh
Confidence 89999875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=312.82 Aligned_cols=223 Identities=22% Similarity=0.307 Sum_probs=180.5
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC-C-C-ceeEEEEECCc
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YVSGSITISGY 915 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~-~-~-~~~G~i~i~g~ 915 (1436)
++.+|++..+... .+...+++||||++++||++||+|.|||||||+.++|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 4567766555421 123469999999999999999999999999999999999886 2 2 46789999998
Q ss_pred cCC---cc---c-ccceEEEeecCC--CCCCCCcHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCcccccccccC
Q 046196 916 PKN---QE---T-FARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPEV-DSDTRKMFVEEVMELVELNPIREALVGL 985 (1436)
Q Consensus 916 ~~~---~~---~-~~~~~gyv~q~~--~~~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~v~~vl~~l~l~~~~~~~~g~ 985 (1436)
++. .+ . +-+.++|++|++ .+.|.+||.+.+.=...... .. ..++.++++.++++.+++.+-......
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~- 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKS- 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhh-
Confidence 752 22 1 235699999996 47799999888765544321 12 345556778899999999865433322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
.+.+|||||||||.||.||+.+|++|+.||||++||...+++|+++|+++.+ .|.|+|++|||.. -+.+.+|||.||
T Consensus 150 -YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 150 -YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred -CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 3578999999999999999999999999999999999999999999999986 5999999999987 488999999999
Q ss_pred ecCcEEEEEcCC
Q 046196 1065 KRGGEEIYVGPL 1076 (1436)
Q Consensus 1065 ~~Gg~~~y~G~~ 1076 (1436)
.. |++|..||.
T Consensus 228 Ya-G~iVE~g~~ 238 (316)
T COG0444 228 YA-GRIVEEGPV 238 (316)
T ss_pred EC-cEEEEeCCH
Confidence 95 899999985
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=302.76 Aligned_cols=156 Identities=29% Similarity=0.450 Sum_probs=141.9
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc--ccccceEEEeecCCCCCCCCcHH
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ--ETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+.
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 58999999999999999999999999999999999876 568999999987643 23456799999999888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD 1022 (1436)
|++. ||||||||++||++|+.+|++|+|||||+|||
T Consensus 92 ~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD 127 (173)
T cd03230 92 ENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127 (173)
T ss_pred HHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 9873 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 1023 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1023 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+.++..+.+.|++++++|.|||+++|+++ .+.+.+|++++|++|
T Consensus 128 ~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 128 PESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999877899999999976 567789999999975
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=321.17 Aligned_cols=196 Identities=24% Similarity=0.370 Sum_probs=154.6
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCc
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lT 940 (1436)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|+..+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 458999999999999999999999999999999999986 568999999987532 234567999999987764 69
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKM-----FVEEVMELV--ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~-----~v~~vl~~l--~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ill 1013 (1436)
|.||+.+... ........+ ..++.++.+ ++....+. .+..|||||||||+|||+|+.+|++|+
T Consensus 92 v~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999976421 111111000 112223332 23222222 246899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||||+|||+.+...+.+.|+++++ |+|||+++|+++ .+ ..+|++++|++ |++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999864 899999999986 34 56999999996 789998874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=317.74 Aligned_cols=206 Identities=25% Similarity=0.329 Sum_probs=167.2
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc-----CCCccc-------cceEEEecC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG-----MEEFVP-------QRTSAYISQ 235 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~Q 235 (1436)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 5899999999999999999999999999999999999997 9999999987 554322 235999999
Q ss_pred CC--CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-
Q 046196 236 ND--LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV- 312 (1436)
Q Consensus 236 ~~--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 312 (1436)
++ .+.+.+|+.||+.+.....+... .. +....++++++.+|+.+
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------~~-----------~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGARH----------------------YG-----------DIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccCc----------------------HH-----------HHHHHHHHHHHHcCCChh
Confidence 96 35677899999976422110000 00 01123456788999963
Q ss_pred cccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHH
Q 046196 313 CADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYE 392 (1436)
Q Consensus 313 ~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 392 (1436)
..++.+ ..|||||||||+|||||+.+|++|+|||||+|||+.+...+.+.|+++... .+.+|+.++|+..++.+
T Consensus 144 ~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 144 RIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVARL 217 (258)
T ss_pred HHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHH
Confidence 445443 469999999999999999999999999999999999999999999987653 35667778999999999
Q ss_pred hcccEEEecCCeEEEecChhHHH
Q 046196 393 LFDDLILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 393 ~~D~iivL~~G~iv~~G~~~~~~ 415 (1436)
.+|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=322.19 Aligned_cols=213 Identities=24% Similarity=0.299 Sum_probs=172.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC---CceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999987652 23599999999999999999999999999999999998752 14689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP----IREALVGL 985 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~ 985 (1436)
.++.. ...++.++|++|+..+++. ||.||+.+....+. ... ...+.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999887775 99999987654331 112 23345788899998853 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEE-EE
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL-LM 1064 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~-~l 1064 (1436)
+..||||||||++||++|+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+...+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 468999999999999999999999999999999999999999999999976 489999999976 5677899976 55
Q ss_pred ecCcEEEEEcCC
Q 046196 1065 KRGGEEIYVGPL 1076 (1436)
Q Consensus 1065 ~~Gg~~~y~G~~ 1076 (1436)
++ |+++..|+.
T Consensus 254 ~~-G~i~~~g~~ 264 (285)
T PRK14254 254 TG-GELVEFDDT 264 (285)
T ss_pred eC-CEEEEeCCH
Confidence 65 788888874
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=314.87 Aligned_cols=203 Identities=23% Similarity=0.374 Sum_probs=166.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478899887652 2459999999999999999999999999999999999876 5799999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSg 993 (1436)
.. ..+++.++|++|+..+++ .|++||+.+....+.. .. ..+.++++++.+++. ...+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 224567899999988876 5999999875433211 11 123467899999995 344443 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
|||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++ |.|||+++|+++ .+ ..+|++++|++.+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~ 214 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHA 214 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEeccc
Confidence 9999999999999999999999999999999999999999998754 899999999986 34 5699999996433
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=317.97 Aligned_cols=207 Identities=18% Similarity=0.279 Sum_probs=162.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-----CCCCcceEEEECCccCCCcc-----ccceEEEecCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG-----KDLKFSGRVTYNGHGMEEFV-----PQRTSAYISQND 237 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~~ 237 (1436)
++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.... .++.++|++|++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 48999999999999999999999999999999999864 45 899999998875321 235699999998
Q ss_pred CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccc
Q 046196 238 LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTM 317 (1436)
Q Consensus 238 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 317 (1436)
.+++. ||+||+.++.+..+... .. .....+...++.+|+.+.....
T Consensus 112 ~~~~~-tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 112 NPFPK-SIYNNITHALKYAGERR---------KS------------------------VLDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred ccCcc-cHHHHHHHHHHhcCCCc---------HH------------------------HHHHHHHHHHHHcCCCcchHHH
Confidence 87774 99999988643211000 00 0011233456667764211011
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
. ++.+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.. + ++|+.++|+..++.+++|+|
T Consensus 158 ~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 158 L-HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred H-hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCEE
Confidence 1 234457999999999999999999999999999999999999999999999743 3 56666888888899999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|++++.|+.+++.
T Consensus 234 ~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 234 AFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=350.12 Aligned_cols=212 Identities=29% Similarity=0.439 Sum_probs=174.4
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|++|.++. +++.+|+|+|++++|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 46999999998741 22458999999999999999999999999999999999987 568999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
+++ ..+++.++||+|++.+++ .|++||+.+.. | +.+.+ .+.++++..++.+. .|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 643 456778999999988775 69999997532 2 22222 24455555555432 35555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
..+||||||||++|||||+++|++|+||||||+||+.+...+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 56899999999999999999999999999999999999999999999974 5899999999975 4567999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 799999984
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=350.72 Aligned_cols=216 Identities=28% Similarity=0.343 Sum_probs=179.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 477888887652 2359999999999999999999999999999999999876 5689999999876
Q ss_pred Cc----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046196 918 NQ----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST 993 (1436)
Q Consensus 918 ~~----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg 993 (1436)
.. ...++.+||++|+..+++.+||.||+.+..........+..+.++.++++++.+++.+..+.. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 42 123457999999998999999999998753211111122334445688999999998666554 457999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+...+|++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 56788999999996 677766
Q ss_pred cC
Q 046196 1074 GP 1075 (1436)
Q Consensus 1074 G~ 1075 (1436)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 64
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=386.66 Aligned_cols=206 Identities=21% Similarity=0.270 Sum_probs=169.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++|+|||.++|+||+|||||||+++|.|+++|+ +|+|.+||.++++... ++.++||||++.+|. .|
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~-gT 1325 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS-GT 1325 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC-cc
Confidence 4899999999999999999999999999999999999998 9999999999987654 467999999998775 59
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|||||.++.. .+.+++.++++..+.+.. +-.+++..||.||+.+.
T Consensus 1326 Ir~NL~~~~~--------------------------~sdeei~~al~~a~l~~~--------I~~lp~GLdt~v~e~G~- 1370 (1495)
T PLN03232 1326 VRFNIDPFSE--------------------------HNDADLWEALERAHIKDV--------IDRNPFGLDAEVSEGGE- 1370 (1495)
T ss_pred HHHHcCCCCC--------------------------CCHHHHHHHHHHcCCHHH--------HHhCcCCCCceecCCCC-
Confidence 9999986421 111233333332222211 12467788999998654
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
+||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. ++.|++++.|.. ++...||+|++|++|+
T Consensus 1371 ~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~---~~~TvI~IAHRl-~ti~~~DrIlVL~~G~ 1446 (1495)
T PLN03232 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF---KSCTMLVIAHRL-NTIIDCDKILVLSSGQ 1446 (1495)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEeCCH-HHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999752 345555576765 5566799999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
|++.|+++++++
T Consensus 1447 ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1447 VLEYDSPQELLS 1458 (1495)
T ss_pred EEEECCHHHHHh
Confidence 999999999874
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=319.49 Aligned_cols=209 Identities=20% Similarity=0.284 Sum_probs=162.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL--KFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
.+|+|+|++|++|++++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 106 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF 106 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence 48999999999999999999999999999999999986310 1289999999876421 1235699999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ .||+||+.++....+... + ....++.+++.+++....+... +
T Consensus 107 ~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~~-~ 149 (269)
T PRK14259 107 P-KSIYENIAFGARINGYTG------D-----------------------------MDELVERSLRKAAVWDECKDKL-N 149 (269)
T ss_pred h-hhHHHHHhhhhhhcCCcH------H-----------------------------HHHHHHHHHHHhCCcchhhhhh-C
Confidence 7 599999998754321100 0 0012234566666632111111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.+|+.++|+..++.++||++++|
T Consensus 150 ~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l 226 (269)
T PRK14259 150 ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNMQQAVRVSDMTAFF 226 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEE
Confidence 34457999999999999999999999999999999999999999999998742 356677889999999999999999
Q ss_pred cC-----------CeEEEecChhHHHH
Q 046196 401 SD-----------GQIVYQGPRENVLE 416 (1436)
Q Consensus 401 ~~-----------G~iv~~G~~~~~~~ 416 (1436)
++ |++++.|+++++.+
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred eccccccccccccceEEEeCCHHHHHh
Confidence 96 67999999988753
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=315.73 Aligned_cols=210 Identities=21% Similarity=0.334 Sum_probs=163.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK--DLKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|++|++||+++|+||||||||||+++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 489999999999999999999999999999999998753 112389999999987531 1235699999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ +||+||+.++....+.... . .....++.+++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------K------------------------KLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhHHHH-h
Confidence 6 8999999987543221000 0 00112344566666642111111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +++|+.++|+..++.+.+|++++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK---DYTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEEeCHHHHHhhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998742 356666888888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=320.58 Aligned_cols=218 Identities=22% Similarity=0.251 Sum_probs=172.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC--C-CceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 914 (1436)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 588999987653 2358999999999999999999999999999999999864 1 13689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGV 988 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~ 988 (1436)
.++.. ..+++.++|++|+..+++ .||+||+.+....+. ..+.+...+.+.++++.+++.. +.+.. . ..+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~-~~~ 165 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-H-DNA 165 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-h-cCc
Confidence 87632 234567999999988877 599999988653321 1112222344567777765431 21111 1 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|++ |
T Consensus 166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G 242 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-G 242 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999865 799999999976 46778999999986 6
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 243 ~i~~~g~~ 250 (271)
T PRK14238 243 YVNEYDDT 250 (271)
T ss_pred EEEEeCCH
Confidence 88888874
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=357.34 Aligned_cols=208 Identities=22% Similarity=0.377 Sum_probs=166.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
+.+|+|+|++++|||.++|+||||||||||+++|+|+++|. +|+|.+||.++++..+ ++.++|++|++.++ +.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf-~~ 428 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLF-AA 428 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCccc-cc
Confidence 35899999999999999999999999999999999999998 9999999999876654 35799999998855 67
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
|++|||.++.+. .+.+++.++++..+.. +.++ .+++..||.+|+.+
T Consensus 429 Ti~~Ni~~~~~~-------------------------~~~~~~~~~l~~~~l~------~~i~--~l~~gl~t~i~~~g- 474 (576)
T TIGR02204 429 SVMENIRYGRPD-------------------------ATDEEVEAAARAAHAH------EFIS--ALPEGYDTYLGERG- 474 (576)
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHcCcH------HHHH--hCCCCCCceeCCCC-
Confidence 999999886311 1111222222211111 1122 25667799998764
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
..||||||||++||||++++|++++||||||+||..++..+.+.|++.. .+.++|.++|.. +....+|+|++|++|
T Consensus 475 ~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~---~~~t~IiitH~~-~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM---KGRTTLIIAHRL-ATVLKADRIVVMDQG 550 (576)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh---CCCEEEEEecch-HHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999863 234555566765 556789999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++..|+++++.+
T Consensus 551 ~~~~~g~~~~l~~ 563 (576)
T TIGR02204 551 RIVAQGTHAELIA 563 (576)
T ss_pred EEEeeecHHHHHH
Confidence 9999999998754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=297.52 Aligned_cols=211 Identities=22% Similarity=0.319 Sum_probs=185.8
Q ss_pred CCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCC
Q 046196 163 RKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGE 242 (1436)
Q Consensus 163 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~ 242 (1436)
+..++++++|+||.++||++.+++|||||||||.+++|+|+++|+ +|+|+++|.+++... ..+|||.|.+.-+++.
T Consensus 11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k 86 (300)
T COG4152 11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPK 86 (300)
T ss_pred ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCcc
Confidence 345677999999999999999999999999999999999999998 999999999886543 3569999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||.|.|.|-++++|+... +.....++.|+.+++.......|
T Consensus 87 ~tv~dql~yla~LkGm~~~----------------------------------e~~~~~~~wLer~~i~~~~~~kI---- 128 (300)
T COG4152 87 MTVEDQLKYLAELKGMPKA----------------------------------EIQKKLQAWLERLEIVGKKTKKI---- 128 (300)
T ss_pred CcHHHHHHHHHHhcCCcHH----------------------------------HHHHHHHHHHHhccccccccchH----
Confidence 9999999999999886431 12234567899999987766444
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
..||-|.+|++.+-.+++.+|++++||||+|||||.++..+-+.+.++.. .|.+|+..+|.+..+.++||++++|++
T Consensus 129 -k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL~k 205 (300)
T COG4152 129 -KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLKK 205 (300)
T ss_pred -HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhheecC
Confidence 57999999999999999999999999999999999999999999999854 466777788999999999999999999
Q ss_pred CeEEEecChhHHHHHH
Q 046196 403 GQIVYQGPRENVLEFF 418 (1436)
Q Consensus 403 G~iv~~G~~~~~~~~f 418 (1436)
|+.|.+|+.+++..-|
T Consensus 206 G~~V~~G~v~~ir~~~ 221 (300)
T COG4152 206 GQTVLYGTVEDIRRSF 221 (300)
T ss_pred CceEEeccHHHHHHhc
Confidence 9999999999998754
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=320.39 Aligned_cols=220 Identities=19% Similarity=0.232 Sum_probs=173.9
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEE
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITI 912 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i 912 (1436)
+..+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 34688999987752 235899999999999999999999999999999999986421 25899999
Q ss_pred CCccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046196 913 SGYPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPG 987 (1436)
Q Consensus 913 ~g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~ 987 (1436)
+|.++.. ..+++.++|++|+..+++. ||.||+.+....+. .. ....+.+++.++.+++......... ..
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~ 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLK-EK 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhc-CC
Confidence 9987632 2345679999999887764 99999987643321 11 1122345677788776421111111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe--
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-- 1065 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-- 1065 (1436)
+..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~ 236 (274)
T PRK14265 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTE 236 (274)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecc
Confidence 467999999999999999999999999999999999999999999999865 789999999986 5778999999997
Q ss_pred ------cCcEEEEEcCC
Q 046196 1066 ------RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ------~Gg~~~y~G~~ 1076 (1436)
+.|+++..|+.
T Consensus 237 ~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 237 IDEYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccccCceEEEeCCH
Confidence 25899999986
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=317.28 Aligned_cols=197 Identities=26% Similarity=0.359 Sum_probs=167.3
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCcHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
+|+|+||++++||+++|+|+||||||||+++|+|..+ .+|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999874 38999999987642 22345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCcceee
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1015 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~-------~p~illlD 1015 (1436)
||+.+.... ..+.++..+.++++++.+++.+..+.. ++.||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112223345678999999998766654 45799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999976 57789999999996 788888875
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=318.09 Aligned_cols=215 Identities=25% Similarity=0.305 Sum_probs=172.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc-
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP- 916 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 916 (1436)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 367888877652 2358999999999999999999999999999999999987 568999999976
Q ss_pred ----CCc---cc----ccceEEEeecCCC--CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 046196 917 ----KNQ---ET----FARISGYCEQTDI--HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREAL 982 (1436)
Q Consensus 917 ----~~~---~~----~~~~~gyv~q~~~--~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~ 982 (1436)
+.. .. .++.++|++|++. +.+.+|+.|++.+..... .. ....+..+.++++++.+++.+ ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 422 11 1346899999864 446679999986542211 10 111223456788999999963 44543
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeE
Q 046196 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 983 ~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998654 899999999976 566789999
Q ss_pred EEEecCcEEEEEcCC
Q 046196 1062 LLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1062 ~~l~~Gg~~~y~G~~ 1076 (1436)
++|++ |+++..|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99986 788888874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=349.49 Aligned_cols=212 Identities=28% Similarity=0.441 Sum_probs=176.2
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++|+|++|+++. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46999999998741 23459999999999999999999999999999999999987 579999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
++. ..+++.++||+|++.+++ .|++||+.+.. | +.+.+ .+.++++..++.+. .|+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCCHH----HHHHHHHHcChHHHHHhCcccccceecCC
Confidence 643 456788999999998876 59999997642 1 22222 24566666665432 35555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
..+||||||||++|||||+++|+||+||||||+||+.+...+++.|+++. +++|+|+++|+++ ....+|+|++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 46899999999999999999999999999999999999999999999876 4799999999975 5678999999986
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 799999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=315.71 Aligned_cols=212 Identities=19% Similarity=0.291 Sum_probs=166.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCcc-----ccceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG--KDLKFSGRVTYNGHGMEEFV-----PQRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~~~~ 239 (1436)
+++|+|+|++|++|++++|+||||||||||+++|+|..+ |+...+|+|.++|.++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 358999999999999999999999999999999999976 21113899999998764321 24579999999887
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++. ||+||+.++....+..... ......++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-
Confidence 775 9999998864322110000 000112455788889865322222
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+..++.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++. . +.+|+.++|+..++.+++|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--K-NFTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhcCEEEE
Confidence 23456799999999999999999999999999999999999999999999873 2 45666688998899999999999
Q ss_pred ecCCeEEEecChhHHH
Q 046196 400 LSDGQIVYQGPRENVL 415 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~ 415 (1436)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=309.05 Aligned_cols=199 Identities=20% Similarity=0.293 Sum_probs=165.3
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-ccceEEEecCCCCcCCCCCHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-PQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999998 999999999875432 2356999999998898999999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+.+...... ... ......++.+++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~~-~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN---------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhccC-Ccc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 9987532100 000 001123456788999987666554 4699
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++... .+++|+.++|+..++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999987642 35667778899889999999999999999999
Q ss_pred ecC
Q 046196 408 QGP 410 (1436)
Q Consensus 408 ~G~ 410 (1436)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=360.47 Aligned_cols=212 Identities=28% Similarity=0.458 Sum_probs=175.8
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
...++|+|++|.++. ++++|+|+|++++|||++||+||||||||||++.|.|..+ +.+|+|.+||.
T Consensus 326 ~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~ 391 (567)
T COG1132 326 IGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGI 391 (567)
T ss_pred CCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCE
Confidence 346999999998752 3569999999999999999999999999999999999987 57999999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE-------LNPIREALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~-------l~~~~~~~~g~ 985 (1436)
+++. ..+++.++||+|+..++. -||+||+.++. + +.++++ ++++++..+ +.+-.|+.+|
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~-~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vg- 460 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR----P-DATDEE----IEEALKLANAHEFIANLPDGYDTIVG- 460 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhChHHHHHhCcccccceec-
Confidence 8653 557788999999988887 89999998753 1 123222 233333322 2234578887
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
+++..||||||||++||||+++||+||+||||||+||+.+...+++.++++. +|+|+++++|+++ ....+|+|++|+
T Consensus 461 e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~ 537 (567)
T COG1132 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLD 537 (567)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEE
Confidence 3456899999999999999999999999999999999999999999999876 5789999999985 455599999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|..
T Consensus 538 ~-G~i~e~G~h 547 (567)
T COG1132 538 N-GRIVERGTH 547 (567)
T ss_pred C-CEEEEecCH
Confidence 7 689999975
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=314.89 Aligned_cols=208 Identities=22% Similarity=0.297 Sum_probs=164.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCc-----cccceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL--KFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~ 239 (1436)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 359999999999999999999999999999999999987631 1379999999887531 123569999999988
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc----cccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE----VCAD 315 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 315 (1436)
++.+||+||+.++....+... .+ + .....+.+++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~-~~---~-----------------------------~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRD-RD---H-----------------------------LMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCC-HH---H-----------------------------HHHHHHHHHHHcCcchhhhhhhc
Confidence 999999999987643221100 00 0 001122344455442 2334
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcc
Q 046196 316 TMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFD 395 (1436)
Q Consensus 316 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 395 (1436)
+. ++.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++.+ + ++++.++|+..++.+.+|
T Consensus 144 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 TP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--V-TTIIIVTHNMHQAARVSD 215 (252)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCC
Confidence 33 456999999999999999999999999999999999999999999998742 3 666778899989999999
Q ss_pred cEEEecCCeEEEecChhHHH
Q 046196 396 DLILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 396 ~iivL~~G~iv~~G~~~~~~ 415 (1436)
+|++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998874
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=310.13 Aligned_cols=197 Identities=27% Similarity=0.376 Sum_probs=163.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|++..+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 56777776542 2358999999999999999999999999999999999876 56899999998753
Q ss_pred cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 046196 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKR 998 (1436)
Q Consensus 919 ~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqR 998 (1436)
....++.++|++|++.+++.+||.|++.+....+. .. .+.++++++.+++.+..+.. ++.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHH
Confidence 22245678999998888889999999987543321 11 12368899999998765554 35799999999
Q ss_pred HHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 999 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 999 l~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++. . |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 99999999999999999999999999999999999998777999999999975 343 3 8887774
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=315.80 Aligned_cols=220 Identities=23% Similarity=0.292 Sum_probs=173.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478888887652 2359999999999999999999999999999999999731125789999999876
Q ss_pred Ccc---cccc-eEEEeecCCCCCCCCcHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046196 918 NQE---TFAR-ISGYCEQTDIHSPHVTVYESLVYSAWLRLP----PEVDSDTRKMFVEEVMELVELN-PIREALVGLPGV 988 (1436)
Q Consensus 918 ~~~---~~~~-~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~----~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~ 988 (1436)
... ...+ .++|++|++.+++.+|+.+++.+....... ......+..+.++++++.+++. ...+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999998765432110 0111222335577889999986 34444321
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hCeEEEEecC
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDA-FDELLLMKRG 1067 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~G 1067 (1436)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 259999999999999999999999999999999999999999999998877999999999976 34444 799999985
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 799999875
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=278.70 Aligned_cols=202 Identities=25% Similarity=0.346 Sum_probs=171.7
Q ss_pred CCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEec
Q 046196 162 SRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYIS 234 (1436)
Q Consensus 162 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~ 234 (1436)
....+.+||++|++.|++||.++|+|||||||||||-+|+|+-+|+ +|+|.+.|+++..+.. .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3445678999999999999999999999999999999999999998 9999999998865542 36799999
Q ss_pred CCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccc
Q 046196 235 QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCA 314 (1436)
Q Consensus 235 Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 314 (1436)
|...++|+||-.||+....+++|-..+ +........|+.+||.+..
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCccccc
Confidence 999999999999999988777652211 0112234568999998766
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhc
Q 046196 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF 394 (1436)
Q Consensus 315 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 394 (1436)
+ .++..|||||+|||+||||+...|+|||-||||-.||..|..+|.+.|-.+.+. .+++++.++|+. ....-|
T Consensus 141 ~-----HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~-~LA~Rc 213 (228)
T COG4181 141 T-----HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDP-QLAARC 213 (228)
T ss_pred c-----cCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCH-HHHHhh
Confidence 5 456679999999999999999999999999999999999999999999988764 567777777774 677889
Q ss_pred ccEEEecCCeEEE
Q 046196 395 DDLILLSDGQIVY 407 (1436)
Q Consensus 395 D~iivL~~G~iv~ 407 (1436)
||++-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999974
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=315.14 Aligned_cols=211 Identities=21% Similarity=0.303 Sum_probs=164.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCC-c---cccceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEE-F---VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~-~---~~~~~~~yv~Q~~~~~ 240 (1436)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 35899999999999999999999999999999999998752 0138999999987642 1 1235699999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ .||+||+.++....+.... . .....++..++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK---------K------------------------VLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch---------H------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 8999999886432211000 0 00112334566666643211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..+..|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++.+ + ++|+.++|+..++.+.+|++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999999753 3 56666888888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+.+++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 218 LMGELVEHDDTQVIF 232 (249)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=317.51 Aligned_cols=211 Identities=27% Similarity=0.354 Sum_probs=167.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCcc----ccceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEEFV----PQRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~~~~~ 240 (1436)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|. ...+|+|.++|+++.+.. .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 35999999999999999999999999999999999998751 013899999998875431 245799999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ +||+||+.++.+...... .. +....++.+++.+||.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVP---------RK------------------------EFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCC---------HH------------------------HHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 899999988643211000 00 00112345677888865332222 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.++.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++.. + .+|+.++|+..++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 3 56667889999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998874
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=314.91 Aligned_cols=210 Identities=21% Similarity=0.355 Sum_probs=164.1
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG--KDLKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 58999999999999999999999999999999999986 2111389999999876431 1235699999998777
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ .||+||+.++....+.... + .....++.+++.+||........ +
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (251)
T PRK14251 98 P-FSVYDNVAYGLKIAGVKDK-----E----------------------------LIDQRVEESLKQAAIWKETKDNL-D 142 (251)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-----H----------------------------HHHHHHHHHHHHcCCCcchHHHh-c
Confidence 5 7999999886432211000 0 00112345677778742110011 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.+..||||||||++||||++.+|++++|||||+|||+.+...+.+.|+++.+ +++|+.++|+..++.+.+|+|++|
T Consensus 143 ~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i~~l 219 (251)
T PRK14251 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH---QYTFIMVTHNLQQAGRISDQTAFL 219 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc---CCeEEEEECCHHHHHhhcCEEEEE
Confidence 34457999999999999999999999999999999999999999999998743 356777889998999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|+++..|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 220 MNGDLIEAGPTEEMF 234 (251)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=350.08 Aligned_cols=205 Identities=26% Similarity=0.340 Sum_probs=172.7
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecCCCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQTDIHSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~~l 939 (1436)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+..+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 469999999999999999999999999999999999876 5699999999876421 2345699999998888999
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs 1019 (1436)
||+||+.+..........+.++..+.++++++.+++.+..+.. +..|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998753211010112233345688999999998766665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCC
Q 046196 1020 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLG 1077 (1436)
Q Consensus 1020 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~ 1077 (1436)
|||+.+...+.+.|++++++|+|||+++|+++ ++...+|++++|++ |+++..|+..
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLA 219 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChh
Confidence 99999999999999999878999999999976 56778999999996 7899998764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.89 Aligned_cols=210 Identities=19% Similarity=0.252 Sum_probs=165.0
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL--KFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 48999999999999999999999999999999999998751 1259999999877432 1245799999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+. ||+||+.++....+.... + .....++.+++.+||.+...... +
T Consensus 98 ~~-tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 142 (251)
T PRK14249 98 PK-SIFDNVAFGPRMLGTTAQ-----S----------------------------RLDEVVEKSLRQAALWDEVKDNL-H 142 (251)
T ss_pred cC-cHHHHHhhHHHhcCCChh-----h----------------------------HHHHHHHHHHHHhCCchhhhhHh-h
Confidence 75 999999987543221000 0 00012234456666643211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.+..|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. . +.+|+.++|+..++.+.+|++++|
T Consensus 143 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tilivsh~~~~~~~~~d~i~~l 219 (251)
T PRK14249 143 KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--Q-NYTIAIVTHNMQQAARASDWTGFL 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHhhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999873 2 456777899999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 220 LTGDLVEYGRTGEIF 234 (251)
T ss_pred eCCeEEEeCCHHHHH
Confidence 999999999988774
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=316.85 Aligned_cols=213 Identities=28% Similarity=0.389 Sum_probs=169.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-----CCcceEEEECCccCCCccc---cceEEEecCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD-----LKFSGRVTYNGHGMEEFVP---QRTSAYISQNDL 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~ 238 (1436)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 35999999999999999999999999999999999999874 1127999999988754322 345899999987
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 318 (1436)
.++.+||+||+.++..... .... ... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~--~~~~---~~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHA--RRAG---ALT-------------------------HRDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhcccccc--cccc---cCC-------------------------HHHHHHHHHHHHHcCcHhhhcCCc
Confidence 6777999999988532100 0000 000 001123456788999986655444
Q ss_pred cCcccccCChhhhhHHHHHHHHh---------cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLV---------GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE 389 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~---------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 389 (1436)
..|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.+. .+++|+.++|+..+
T Consensus 144 -----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tviiisH~~~~ 217 (272)
T PRK13547 144 -----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD-WNLGVLAIVHDPNL 217 (272)
T ss_pred -----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHH
Confidence 469999999999999999 599999999999999999999999999997653 24566668898888
Q ss_pred HHHhcccEEEecCCeEEEecChhHHH
Q 046196 390 TYELFDDLILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 390 ~~~~~D~iivL~~G~iv~~G~~~~~~ 415 (1436)
+.+++|++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 98999999999999999999988763
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=318.69 Aligned_cols=218 Identities=20% Similarity=0.231 Sum_probs=172.5
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478899887653 235899999999999999999999999999999999975421 3689999999
Q ss_pred ccCC-----cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKN-----QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~-----~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++. ....++.++|++|+..+++ .|+.||+.+....+. .. .+..+.++++++.+++.+..+.... ..+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 8753 1234567999999988777 499999987653321 11 1223445677787777431111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec---
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR--- 1066 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~--- 1066 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999875 589999999986 58889999999982
Q ss_pred -----CcEEEEEcCC
Q 046196 1067 -----GGEEIYVGPL 1076 (1436)
Q Consensus 1067 -----Gg~~~y~G~~ 1076 (1436)
.|+++..|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4789999874
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=313.69 Aligned_cols=209 Identities=27% Similarity=0.413 Sum_probs=166.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ..++.+|+|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-----------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcC-----------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 56777766542 112459999999999999999999999999999999999876 56899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 046196 919 Q---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG------LPGVS 989 (1436)
Q Consensus 919 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g------~~~~~ 989 (1436)
. ...++.++|++|+..+++ .||.|++.+... ... .+.++++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 223457999999988776 699999975321 111 1235677888888776655321 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|+++ ..+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEeC-Ce
Confidence 89999999999999999999999999999999999999999999998764 89999999976 3478999999996 67
Q ss_pred EEEEc
Q 046196 1070 EIYVG 1074 (1436)
Q Consensus 1070 ~~y~G 1074 (1436)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 76654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=317.43 Aligned_cols=210 Identities=20% Similarity=0.303 Sum_probs=165.1
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|++|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 5899999999999999999999999999999999998741 01389999999887531 1245799999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+. ||+||+.++....+... + . .....++.+++.+|+.+...+.. +
T Consensus 119 ~~-tv~enl~~~~~~~~~~~--~-------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 163 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINN--R-------R------------------------VLDEAVERSLRGAALWDEVKDRL-H 163 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCc--H-------H------------------------HHHHHHHHHHHHcCCChhHHHHh-h
Confidence 75 99999988654322100 0 0 00112344567777753211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+.++.|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+ + .+++.++|+..++.+.+|+|++|
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--K-YTIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEeCCHHHHHhhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999999853 3 45666889888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|++++.|+++++.
T Consensus 241 ~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 241 YMGKLVEYGDTDTLF 255 (272)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=316.61 Aligned_cols=203 Identities=25% Similarity=0.281 Sum_probs=166.0
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC----CCCcceEEEECCccCCCccc-cceEEEecCCCC--cC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK----DLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDL--HI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~--~~ 240 (1436)
++|+|+|+++++||+++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccC
Confidence 489999999999999999999999999999999999988 5 8999999988754322 256999999974 34
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc---ccccc
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV---CADTM 317 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~ 317 (1436)
+..|+.+++.+.++..+.. . ....++.+++.+||.+ ..++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~----------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~- 136 (254)
T PRK10418 94 PLHTMHTHARETCLALGKP----------A--------------------------DDATLTAALEAVGLENAARVLKL- 136 (254)
T ss_pred ccccHHHHHHHHHHHcCCC----------h--------------------------HHHHHHHHHHHcCCCChhhhhhc-
Confidence 5679999987643221100 0 0023456788899875 2343
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
.+..|||||||||+|||||+.+|++|||||||+|||..++..+.+.|+++++. .+++|+.++|+..++.+.+|++
T Consensus 137 ----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 137 ----YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred ----CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEE
Confidence 34569999999999999999999999999999999999999999999998653 3566777889998999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 212 AVMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999988774
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=318.85 Aligned_cols=195 Identities=26% Similarity=0.336 Sum_probs=155.8
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCcH
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|+..+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 58999999999999999999999999999999999986 579999999987532 234567999999988776 699
Q ss_pred HHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 046196 942 YESLVYSAWLRLPPEVDSDTRK-----MFVEEVMELV--ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1014 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~-----~~v~~vl~~l--~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illl 1014 (1436)
+||+.+.... ....... ..+++.++.+ ++.+..+.. +..||+|||||++||++|+.+|++++|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999764321 1111110 1123444444 444333332 568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1015 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1015 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||||+|||+.+...+.+.|+++.+ |.|||+++|+++ ++. .+|++++|++ |+++..|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecC-CeEeeeCCH
Confidence 999999999999999999999864 899999999986 454 5999999997 678888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=319.46 Aligned_cols=210 Identities=20% Similarity=0.295 Sum_probs=171.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. +...+|+|+|++|++||+++|+|+||||||||+++|+|..+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3778998877631 12358999999999999999999999999999999999875 479999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL------PGV 988 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~------~~~ 988 (1436)
.. ..+++.++|++|++.+++ .|++||+.... .... +.+.+.++.++|.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345667999999998887 49999996321 1111 2356778888987665554321 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|++.. .++|||+++|+++ .+ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 4899999999975 34 45999999986 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
++++.|++
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 89999975
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=359.94 Aligned_cols=210 Identities=24% Similarity=0.379 Sum_probs=172.9
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++|+|+++.+. +++.+|+|+|++|+||+++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999986432 1245899999999999999999999999999999999987 4 48999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-------IREALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~~ 986 (1436)
+.. ..+++.++||+|++.++. .|++||+.++. | +.+.+ .++++++..++.+ -.|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~-~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN----P-DASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC----C-CCCHH----HHHHHHHHhCHHHHHHhcccccccccccC
Confidence 643 456788999999998876 59999998752 2 23332 2455566555543 235666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +++|+|+++|+++ ....+|+|++|++
T Consensus 483 -G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 -AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 46799999999999999999999999999999999999999999999875 5899999999974 5678999999986
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 789988874
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=314.08 Aligned_cols=210 Identities=21% Similarity=0.286 Sum_probs=164.4
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD--LKFSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
.+|+|+|+++++||+++|+||||||||||+++|+|..++. ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 5899999999999999999999999999999999987531 11379999999987542 1135699999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ .||+||+.|+.+..+.... ......++.+++.++|.+...+.. +
T Consensus 100 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~-~ 144 (253)
T PRK14261 100 P-KSIYENVAYGPRIHGEKNK---------------------------------KTLDTIVEKSLKGAALWDEVKDRL-H 144 (253)
T ss_pred c-ccHHHHHHhhHHhcCCCCH---------------------------------HHHHHHHHHHHHHhcCchhhHHHh-h
Confidence 7 4999999987543211000 000112334566677643211111 2
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+..+.||||||||++|||+++.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.+.+|++++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTGFM 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999998753 3 56666889988999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|+++..|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 222 YLGKLIEFDKTTQIF 236 (253)
T ss_pred ECCEEEEcCCHHHHH
Confidence 999999999988764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=319.03 Aligned_cols=196 Identities=30% Similarity=0.412 Sum_probs=154.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCc
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lT 940 (1436)
+.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 458999999999999999999999999999999999976 569999999987532 223456999999987776 69
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~-------~g~~~~~~LSgGqrqRl~iA~aL~~~p~ill 1013 (1436)
|+|++.+.... ...+ ..++.++..++.+..+.+ .. ..+..||||||||++||++|+.+|++|+
T Consensus 93 v~e~l~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPD-----ATDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCC-----CCHH----HHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999764211 1111 122333333332221111 11 1246899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++ +.+|++++|++ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 7899999999976 34 47999999997 688888874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=315.54 Aligned_cols=217 Identities=24% Similarity=0.305 Sum_probs=172.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE------EEE
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG------SIT 911 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G------~i~ 911 (1436)
.+.++|+++.+. ++.+|+|+||++++||+++|+|+||||||||+++|+|... +.+| ++.
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~ 74 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVL 74 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEE
Confidence 477888876652 3468999999999999999999999999999999999876 3454 455
Q ss_pred ECCccCC---cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCC
Q 046196 912 ISGYPKN---QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR-EALVGLPG 987 (1436)
Q Consensus 912 i~g~~~~---~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~-~~~~g~~~ 987 (1436)
++|.+.. ....++.++|++|++.+++.+|++||+.+...... ....++..+.++++++.+++.+.. +.... .
T Consensus 75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 150 (257)
T PRK14246 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS--P 150 (257)
T ss_pred ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC--C
Confidence 5555442 12345679999999999999999999988643321 112234445678899999986421 11111 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+..||+|||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ ++|||+++|+++ .+...+|++++|++
T Consensus 151 ~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~- 227 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN- 227 (257)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999999865 699999999976 46688999999985
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 228 g~i~~~g~~ 236 (257)
T PRK14246 228 GELVEWGSS 236 (257)
T ss_pred CEEEEECCH
Confidence 788888874
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=313.66 Aligned_cols=206 Identities=28% Similarity=0.432 Sum_probs=159.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++ ..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 35899999999999999999999999999999999999987 9999999987654322 35699999998765 57
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHh--CCcccccccccCc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL--GLEVCADTMVGDE 321 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 321 (1436)
||+||+.+... . ...+...+ +... ...+..++.+ |++...+ +
T Consensus 91 tv~~nl~~~~~--~--~~~~~~~~---------------------~~~~------~~~~~~l~~l~~~~~~~~~-----~ 134 (237)
T cd03252 91 SIRDNIALADP--G--MSMERVIE---------------------AAKL------AGAHDFISELPEGYDTIVG-----E 134 (237)
T ss_pred hHHHHhhccCC--C--CCHHHHHH---------------------HHHH------cCcHHHHHhCcccccchhh-----c
Confidence 99999987532 1 00000000 0000 0012234444 4443333 3
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.+..|||||||||+||||++.+|++++|||||+|||+.+...+.+.|+++. . +.+|+.++|+..++ ..+|++++|+
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sH~~~~~-~~~d~v~~l~ 210 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--A-GRTVIIIAHRLSTV-KNADRIIVME 210 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCCHHHH-HhCCEEEEEE
Confidence 445799999999999999999999999999999999999999999999874 2 45566677887777 5699999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|++++.|+++++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999888754
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=290.72 Aligned_cols=211 Identities=27% Similarity=0.376 Sum_probs=181.4
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCCcCC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIG 241 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~~~~ 241 (1436)
.++.+|+|+|+.|++|.+|+++|||||||||||.+++++++.+ +|+|+++|.++.....+ +..+..-|+...-.
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 4467999999999999999999999999999999999999998 99999999998776543 55677889888888
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
.+||||-+.||.--..-|. + ..++...++..++-|+|++..|..+
T Consensus 89 rlTV~dLv~FGRfPYSqGR------------------l--------------t~eD~~~I~~aieyl~L~~l~dryL--- 133 (252)
T COG4604 89 RLTVRDLVGFGRFPYSQGR------------------L--------------TKEDRRIINEAIEYLHLEDLSDRYL--- 133 (252)
T ss_pred eeEHHHHhhcCCCcccCCC------------------C--------------chHHHHHHHHHHHHhcccchHHHhH---
Confidence 9999999999842211110 0 1123346777899999998877554
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.+||||||||.-||..++++.+.++||||.+.||...+.++++.|+++++..++|+|+ +.|+...+-.++|+|+-|+
T Consensus 134 --d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfAS~YsD~IVAlK 210 (252)
T COG4604 134 --DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYSDHIVALK 210 (252)
T ss_pred --HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHHHhhhhheeeec
Confidence 5699999999999999999999999999999999999999999999999988777666 6788999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|+++.+|+++|+.+
T Consensus 211 ~G~vv~~G~~~eii~ 225 (252)
T COG4604 211 NGKVVKQGSPDEIIQ 225 (252)
T ss_pred CCEEEecCCHHHhcC
Confidence 999999999999864
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=307.71 Aligned_cols=192 Identities=27% Similarity=0.404 Sum_probs=160.3
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-------ccceEEEecCCCCcCCCCC
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-------PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~~~~~lT 244 (1436)
|+|+++++ |+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999987 999999998764211 1356999999998888999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.+..... . .. .....++.+++.+||++..++.+ +
T Consensus 92 ~~~~l~~~~~~~---~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (214)
T cd03297 92 VRENLAFGLKRK---R---------NR------------------------EDRISVDELLDLLGLDHLLNRYP-----A 130 (214)
T ss_pred HHHHHHHHHhhC---C---------HH------------------------HHHHHHHHHHHHcCCHhHhhcCc-----c
Confidence 999998763210 0 00 00123456788999986665444 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++.. .+++++.++|+..++.+.+|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999998653 25567778899999999999999999999
Q ss_pred EEEec
Q 046196 405 IVYQG 409 (1436)
Q Consensus 405 iv~~G 409 (1436)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=302.35 Aligned_cols=159 Identities=32% Similarity=0.450 Sum_probs=142.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-----ccccceEEEeecCCCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-----ETFARISGYCEQTDIHSPH 938 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~ 938 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 358999999999999999999999999999999999876 569999999987642 2345679999999888888
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 046196 939 VTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018 (1436)
Q Consensus 939 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPT 1018 (1436)
.|++|++.+. ||||||||++||++|+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999987531 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 1019 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1019 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999877 899999999975 466689999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=314.87 Aligned_cols=219 Identities=24% Similarity=0.300 Sum_probs=174.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCC---ceeEEEEECC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YVSGSITISG 914 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 914 (1436)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..... +.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367788876652 245999999999999999999999999999999999975311 3689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046196 915 YPKNQ-----ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 915 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+...+.+.+.++.+++.+....... ..+.
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87642 1345679999999888875 99999987643221 11223334567888888888542211111 1256
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
.||+|||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 8999999999999999999999999999999999999999999999854 899999999986 57888999999986 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9998874
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=313.81 Aligned_cols=193 Identities=19% Similarity=0.264 Sum_probs=163.7
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcH
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
..+.+|+|+|++|+|||+++|+||||||||||+++|+|..+ +.+|+|.++|. ++++.|...+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE----------EeEEecccCCCCCCcH
Confidence 34579999999999999999999999999999999999987 56899999984 3566777767788999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
.||+.+..... ..+.++..+.++++++.+++.+..+.. ++.||||||||++||++|+.+|++|+|||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998754332 122344445567888888887766654 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|+.+...+.+.|+++.+.|+|||+++|++. .+.+.+|++++|++ |+++..|+.
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~ 227 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGEL 227 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCH
Confidence 999999999999998777999999999975 56778999999985 788888875
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=314.07 Aligned_cols=219 Identities=24% Similarity=0.296 Sum_probs=169.1
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ ++.+|+|+|++|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56777776652 23589999999999999999999999999999999998421157899999998763
Q ss_pred cc---c-ccceEEEeecCCCCCCCCcHHHHHHHHHH-hcC--CC-CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046196 919 QE---T-FARISGYCEQTDIHSPHVTVYESLVYSAW-LRL--PP-EVDSDTRKMFVEEVMELVELN-PIREALVGLPGVS 989 (1436)
Q Consensus 919 ~~---~-~~~~~gyv~q~~~~~~~lTv~e~l~~~~~-l~~--~~-~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~ 989 (1436)
.. . .++.++|++|++.+++.+|+.+++.+... ++. .. ........+.+++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 22468999999888888887776643211 110 00 011122345677888888884 3344332 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hCeEEEEecCc
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDA-FDELLLMKRGG 1068 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~Gg 1068 (1436)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999877899999999976 34444 899999985 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 88999875
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=327.88 Aligned_cols=211 Identities=24% Similarity=0.384 Sum_probs=176.7
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|++++++. ...++|+|+|+++++||.+||+|+||||||||+..|+|... +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 6899999998853 23469999999999999999999999999999999999887 5799999999886
Q ss_pred C---cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCC
Q 046196 918 N---QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL-------VGLPG 987 (1436)
Q Consensus 918 ~---~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~-------~g~~~ 987 (1436)
. ...+++.+++++|...++ .-|+++||..+. | +.+++ .+.++++.+||.+..... +|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~----~-~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN----P-DASDE----ELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC----C-CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 4 334566789999976655 569999997643 2 23332 257788888988765433 443 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
++.||||||||++|||+|++|.++++|||||.|||+.+.+++++.|.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 678999999999999999999999999999999999999999999998664 899999999965 5688999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|..
T Consensus 548 Gkiie~G~~ 556 (573)
T COG4987 548 GKIIEEGTH 556 (573)
T ss_pred CeeeecCCH
Confidence 799998864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=305.67 Aligned_cols=183 Identities=25% Similarity=0.322 Sum_probs=153.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc--ccccceEEEeecCCCCCCCCcH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ--ETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 459999999999999999999999999999999999876 568999999987532 2234678999999888888999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
.|++.+....+. . + .+.++++++.+++.+..++. +..||||||||++||++|+.+|++++|||||+||
T Consensus 91 ~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 158 (198)
T TIGR01189 91 LENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTAL 158 (198)
T ss_pred HHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999987643321 1 1 23468889999998776655 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEE
Q 046196 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL 1063 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1063 (1436)
|+.++..+++.|++++++|.|||+++|++. ++ .+++++.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEcccc-cc--cceEEee
Confidence 999999999999998777999999999975 22 3466553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=322.67 Aligned_cols=203 Identities=19% Similarity=0.330 Sum_probs=162.9
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--C---CCCcceEEEECCccCCCc-----cccceEEEecCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG--K---DLKFSGRVTYNGHGMEEF-----VPQRTSAYISQND 237 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~---~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~ 237 (1436)
.+|+|+|++|++|++++|+||||||||||+++|+|..+ | + +|+|.++|.++... ..++.++|++|++
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 59999999999999999999999999999999999864 3 5 89999999876432 1235799999998
Q ss_pred CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc----cc
Q 046196 238 LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE----VC 313 (1436)
Q Consensus 238 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~ 313 (1436)
.+++ .||+||+.++.+..+.... ......+..+++.+|+. +.
T Consensus 130 ~l~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~ 175 (286)
T PRK14275 130 NPFP-KSIFDNIAYGPRLHGINDK---------------------------------KQLEEIVEKSLRKAALWDEVSDR 175 (286)
T ss_pred CCCc-cCHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHhCCccchhhH
Confidence 8776 4999999986433211000 00011233456677763 22
Q ss_pred ccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh
Q 046196 314 ADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL 393 (1436)
Q Consensus 314 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 393 (1436)
.+ +.+..|||||||||+|||||+.+|++|||||||+|||+.+...+.+.|+++.. +.+|+.++|+..++.++
T Consensus 176 ~~-----~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~ 247 (286)
T PRK14275 176 LD-----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNMQQASRV 247 (286)
T ss_pred hh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHh
Confidence 33 33457999999999999999999999999999999999999999999998753 35677788999999999
Q ss_pred cccEEEecCCeEEEecChhHHH
Q 046196 394 FDDLILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 394 ~D~iivL~~G~iv~~G~~~~~~ 415 (1436)
+|++++|++|+++..|+++++.
T Consensus 248 ~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 248 SDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988774
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=353.35 Aligned_cols=177 Identities=29% Similarity=0.444 Sum_probs=144.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++. .. +.++||+|++.+| +.|
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF-~~T 423 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSL-QDELRRRISVFAQDAHLF-DTT 423 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhH-HHHHHhheEEEccCcccc-ccc
Confidence 3899999999999999999999999999999999999998 99999999998877 53 5799999999866 559
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+|||.++. |+.+.+++.++++..+.++. ...|+++.||.||+++.
T Consensus 424 I~eNI~~g~-------------------------~~~~~e~i~~al~~a~l~~~--------i~~lp~GldT~ige~G~- 469 (529)
T TIGR02868 424 VRDNLRLGR-------------------------PDATDEELWAALERVGLADW--------LRSLPDGLDTVLGEGGA- 469 (529)
T ss_pred HHHHHhccC-------------------------CCCCHHHHHHHHHHcCCHHH--------HHhCcccccchhccccC-
Confidence 999999862 12222334444443333221 23478899999998665
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP 386 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 386 (1436)
+||||||||++||||++++|+||+||||||+||+.++..|.+.+++.. +++|++.++|.
T Consensus 470 ~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~---~~~TvIiItHr 528 (529)
T TIGR02868 470 RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL---SGKTVVVITHH 528 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEecC
Confidence 699999999999999999999999999999999999999999999752 23444446664
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=314.27 Aligned_cols=210 Identities=20% Similarity=0.268 Sum_probs=164.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCC--cceEEEECCccCCCc-----cccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLK--FSGRVTYNGHGMEEF-----VPQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~--~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~~~~ 240 (1436)
++|+|+|+++++||+++|+|+||||||||+++|+|.++++.. .+|+|.++|+++... ..++.++|++|++.++
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 489999999999999999999999999999999999875311 389999999887431 1234699999998877
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+ +||+||+.++....+... + ......++.+++.+|+.+..... -+
T Consensus 101 ~-~tv~enl~~~~~~~~~~~-------------------~--------------~~~~~~~~~~l~~~~l~~~l~~~-~~ 145 (259)
T PRK14260 101 P-MSIYENVAYGVRISAKLP-------------------Q--------------ADLDEIVESALKGAALWQEVKDK-LN 145 (259)
T ss_pred C-ccHHHHHHHHHHHhcCCC-------------------H--------------HHHHHHHHHHHHHcCCcchhhhH-hc
Confidence 6 899999988643221000 0 00011234456777763211101 12
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..+..|||||||||+|||||+.+|++++|||||+|||+.+..++.+.|+++.. + .+|+.++|+.+++.+++|++++|
T Consensus 146 ~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 146 KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--E-LTIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCeEEEE
Confidence 34557999999999999999999999999999999999999999999998743 3 56677889999999999999999
Q ss_pred c-----CCeEEEecChhHHH
Q 046196 401 S-----DGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~-----~G~iv~~G~~~~~~ 415 (1436)
+ +|+++++|+++++.
T Consensus 223 ~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 223 STDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred eccCCCCceEEEeCCHHHHh
Confidence 8 59999999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1436 | ||||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 7e-09 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 9e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 9e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 9e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 8e-06 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-05 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-04 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 6e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-05 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-04 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-04 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-04 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 8e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 8e-04 |
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1436 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-26 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-13 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-13 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-12 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 9e-21 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-09 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-08 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 8e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 8e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-06 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-17 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-15 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-14 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-14 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-11 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 9e-13 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 8e-06 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-08 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-12 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-05 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-12 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-05 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 6e-11 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-04 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-10 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 4e-10 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 5e-10 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-09 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-09 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-04 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 4e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-08 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 5e-08 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-07 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 4e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 6e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 8e-07 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 8e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 3e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 5e-06 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 7e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-05 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 2e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP--KNQETF 922
LKG+S G + L+G +GAGKTT + +++ + + SG +T+ G +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEV 86
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
++ Y + ++ E L + A S + VE E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1043 VVCTIH 1048
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 3e-13
Identities = 50/249 (20%), Positives = 75/249 (30%), Gaps = 82/249 (32%)
Query: 185 LLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE----------FVPQRTSAYIS 234
L+GP +GKTT L ++ + SG VT G + E ++P+ AY
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY-- 100
Query: 235 QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEG 294
M E L F A E+
Sbjct: 101 ------RNMQGIEYLRFVAGFYASSSS-----EIEEM----------------------- 126
Query: 295 QEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEIST 354
+ +I GL V S G ++L L+ R +DE ++
Sbjct: 127 ------VERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 355 GLDSSTTYQIVNSLRQ----------SIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404
GLD ++ L+Q S H + E L D + L+ +G
Sbjct: 176 GLDVLNAREVRKILKQASQEGLTILVSSHNM------------LEVEFLCDRIALIHNGT 223
Query: 405 IVYQGPREN 413
IV G E
Sbjct: 224 IVETGTVEE 232
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 4e-25
Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 32/216 (14%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
+ ++ G + A++G +G GK+TL+D+L G + G I + +
Sbjct: 21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIEV----------YQSI 68
Query: 927 GYCEQTDIHSPHVTVYESLV------YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE 980
G+ Q +V + +V + P D + ++ + L + +
Sbjct: 69 GFVPQFFSSPFAYSVLD-IVLMGRSTHINTFAKPKSHDYQV----AMQALDYLNLTHLAK 123
Query: 981 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1039
+ LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 124 REF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 1040 GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075
TVV T HQP+ + ++ LL+ + G
Sbjct: 179 NMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 41/257 (15%), Positives = 78/257 (30%), Gaps = 68/257 (26%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+ ++ + + +LG GK+TLL L G G++
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 228 RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIM 287
++ ++ Q +V + + G + D + M
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM-----GRSTHINTFAKPKSH----------DYQVAM 110
Query: 288 KAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARAL 347
+A L L L A +SGGQR+ + ARA+
Sbjct: 111 QA---------------LDYLNLTHLAKREFTS-----LSGGQRQL-------ILIARAI 143
Query: 348 -------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISL--LQPAPETYELFDDLI 398
+DE ++ LD + +++ L N T V + + + +
Sbjct: 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVV---AIANKTL 200
Query: 399 LLSDGQIVYQGPRENVL 415
LL+ + G N+L
Sbjct: 201 LLNKQNFKF-GETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 35/231 (15%)
Query: 850 MPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGS 909
M M+ Q + + L +SG R G + L+G +GAGK+TL+ +AG +G GS
Sbjct: 1 MSIVMQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 910 ITISGYPKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFV 966
I +G P A Y Q V+ + L + ++ +
Sbjct: 56 IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH-YL---TLHQHDKTRTEL----L 107
Query: 967 EEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTS 1019
+V + L+ + LS + +R+ +A + ++ +DEP +
Sbjct: 108 NDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 162
Query: 1020 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAF---DELLLMKRG 1067
LD + + + + G +V + H D+ L+K G
Sbjct: 163 SLDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 3e-15
Identities = 53/269 (19%), Positives = 86/269 (31%), Gaps = 82/269 (30%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
T L +SG ++ + L+GP +GK+TLL +AG G + + G +E +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGKGSIQFAGQPLEAWSAT 69
Query: 228 ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
AY+SQ V L L + +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLT-----------------LHQH-------DKTRTE 105
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRL--------TT 336
L+ L L+ +SGG+ +R+ T
Sbjct: 106 LLNDV---------------AGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 337 GEMLVGPARALFMDEISTGLDSS---TTYQIVNSLRQ-------SIHILNGTAVISLLQP 386
+ + L +DE LD + +I+++L Q S H LN T +
Sbjct: 146 PQANPAG-QLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHA---- 200
Query: 387 APETYELFDDLILLSDGQIVYQGPRENVL 415
LL G+++ G RE VL
Sbjct: 201 --------HRAWLLKGGKMLASGRREEVL 221
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 2e-22
Identities = 36/204 (17%), Positives = 80/204 (39%), Gaps = 25/204 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L+ ++ G + G +G GKTTL+ ++ + G I +G P + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVP-ITKVKGK 79
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984
I + + I ++V + L A L K + + +E VE+ +++
Sbjct: 80 I-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 130
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1043
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G +
Sbjct: 131 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 1044 VCTIHQPSIDIFDAFDELLLMKRG 1067
+ + D + +
Sbjct: 188 ISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 37/231 (16%), Positives = 71/231 (30%), Gaps = 64/231 (27%)
Query: 185 LLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE------FVPQRTSAYISQNDL 238
GP GKTTLL ++ L G + YNG + + F+P+
Sbjct: 40 FHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKIFFLPEEIIVP------ 90
Query: 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKN 298
+++V + L A GV + I +++ + +K
Sbjct: 91 --RKISVEDYLKAVASLYGV----------KVNKNE--------IMDALESVEVLDLKKK 130
Query: 299 VVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDS 358
+ +S G +R+ L+ A +D+ +D
Sbjct: 131 L------------------------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 359 STTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQG 409
+ ++++ S+ + I G +IS + E D L
Sbjct: 167 DSKHKVLKSILE-ILKEKGIVIIS----SREELSYCDVNENLHKYSTKIDK 212
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 9e-21
Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 36/220 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYVSGSITISGYPKNQETF-- 922
LK +S G L G++GAGKTTL+++L T SG++ + G + +
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGYSA 92
Query: 923 ----ARISGYCEQTDIH---SPHVTVYESLVYSA------WLRLPPEVDSDTRKMFVEEV 969
I G+ + V + +V S + + + ++
Sbjct: 93 ETVRQHI-GFVSH-SLLEKFQEGERVID-VVISGAFKSIGVYQDIDDEIRNE----AHQL 145
Query: 970 MELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
++LV ++ + +G LST +++R+ IA L+ P ++ +DEP +GLD A +
Sbjct: 146 LKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESL 200
Query: 1030 MRTVR--NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ + + ++ H +I F ++LL+K G
Sbjct: 201 LSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 58/272 (21%), Positives = 94/272 (34%), Gaps = 79/272 (29%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE---- 223
TIL +S I +L G +GKTTLL L SG V G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91
Query: 224 ---------FVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKA 274
FV + V + + S + +G Y Q++ +
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEG------ERVIDVVI-SGAFKSIG-VY---QDIDDEIRN 140
Query: 275 ANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRL 334
+A L LK++G+ A +G +S G+++R+
Sbjct: 141 -------------EAHQL------------LKLVGMSAKAQQYIGY-----LSTGEKQRV 170
Query: 335 TTGEMLVGPARA-------LFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISL---- 383
M+ ARA L +DE + GLD +++ L A+I
Sbjct: 171 ----MI---ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHF 222
Query: 384 LQPAPETYELFDDLILLSDGQIVYQGPRENVL 415
++ F ++LL DGQ + QG E++L
Sbjct: 223 IEEITA---NFSKILLLKDGQSIQQGAVEDIL 251
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 2e-19
Identities = 50/253 (19%), Positives = 88/253 (34%), Gaps = 42/253 (16%)
Query: 808 GVQSSYGEVRS-------FNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIP 860
GV S YG V N L F ++ F D+ + ++
Sbjct: 296 GVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFS 355
Query: 861 DDRLEF------LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITI 912
L+ L G F + +MG +G GKTTL+ +LAG + G + +
Sbjct: 356 YPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNV 415
Query: 913 SGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMEL 972
S P+ +I+ TV + F +V++
Sbjct: 416 SMKPQ------KIA--------PKFPGTVRQLFFKKIR-------GQFLNPQFQTDVVKP 454
Query: 973 VELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1032
+ ++ I + V LS + +R+ I + L I +DEP++ LD+ I +
Sbjct: 455 LRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV 509
Query: 1033 VRNTV-DTGRTVV 1044
+R + +T
Sbjct: 510 IRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 23/221 (10%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSIT---ISGYPKNQ 919
F RPG + L+G +G GK+T + +LAG + G I Y +
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150
Query: 920 ETFARISGYCEQTD--IHSPHVTVYESLVYSAWLRLPPE---VDSDTRKMFVEEVMELVE 974
E + E I P ++ E + + V+ +++++
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQ 210
Query: 975 LNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
L + + + LS + +R I + V + DEP+S LD + + +R
Sbjct: 211 LENVLKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR 265
Query: 1035 NTVDTGRTVVCTIHQPSIDIF---DAFDELLLMKRGGEEIY 1072
+ + + V+C H D+ D + ++ G +Y
Sbjct: 266 SLLAPTKYVICVEH----DLSVLDYLSDFVCIIY-GVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 63/359 (17%), Positives = 106/359 (29%), Gaps = 99/359 (27%)
Query: 98 NEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYL 157
E + L I L T ++F + + S + + S F
Sbjct: 311 REGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF---- 366
Query: 158 HVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217
+L+ G + +++G +GKTTL+ LAG L D G+
Sbjct: 367 -----------VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQDIPK 412
Query: 218 GHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI 277
+ PQ+ + TVR+ + + + +
Sbjct: 413 LN--VSMKPQKIA-PKFP-------GTVRQLFFKK-----------IRGQFLNPQFQTD- 450
Query: 278 KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG 337
V+K L ++ D V +SGG+ +R+
Sbjct: 451 --------------------------VVKPLRIDDIIDQEVQH-----LSGGELQRVAIV 479
Query: 338 EMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI-----SLLQPAPETYE 392
L PA +DE S LDS +R+ I TA I +
Sbjct: 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMAT------Y 533
Query: 393 LFDDLILLSDGQIV--YQGPRENVLEFFERMGFKCPERKGVADFLQE--VTSRKDQEQY 447
L D +I+ + E++L R FL+ VT R+D +
Sbjct: 534 LADKVIVFEGIPSKNAHARAPESLLTGCNR-------------FLKNLNVTFRRDPNSF 579
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 7e-08
Identities = 52/256 (20%), Positives = 80/256 (31%), Gaps = 61/256 (23%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+ +P ++ L+G GK+T L LAGK +L GR E
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQE----- 142
Query: 228 RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIM 287
Y ++L + E + A IKP +D I
Sbjct: 143 -IIKYFRGSELQNYFTKMLE-----------------------DDIKAIIKP-QYVDNIP 177
Query: 288 KAA-----------SLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTT 336
+A L ++ +KIL LE V + +SGG+ +R
Sbjct: 178 RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE-----NVLKRDIEKLSGGELQRFAI 232
Query: 337 GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI-----SLLQPAPETY 391
G V A DE S+ LD +R S+ + S+L
Sbjct: 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR-SLLAPTKYVICVEHDLSVLD------ 285
Query: 392 ELFDDLILLSDGQIVY 407
L D + ++ VY
Sbjct: 286 YLSDFVCIIYGVPSVY 301
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 3e-19
Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 41/211 (19%)
Query: 876 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYVSGSITISGYPKNQETFARISGYCEQ-TD 933
G ++G +G+GKTTL+ ++G SG+I I+G Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPG------ 987
+ VTV + + E+ + + + +E+++ + L
Sbjct: 83 AYEIGVTVNDIVYL------YEEL----KGLDRDLFLEMLKA-------LKLGEEILRRK 125
Query: 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1047
+ LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ +
Sbjct: 126 LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVT 182
Query: 1048 HQPSIDIFDAF---DELLLMKRGGEEIYVGP 1075
H ++ + G
Sbjct: 183 H----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 47/329 (14%), Positives = 99/329 (30%), Gaps = 83/329 (25%)
Query: 149 MLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL 208
M++ N L + L +++ + + ++LGP SGKTTLL A++G L
Sbjct: 1 MIQ-LKNVGITLSGKGYERFSLENINLEVNGE-KVIILGPNGSGKTTLLRAISG-LLPY- 56
Query: 209 KFSGRVTYNGHGMEEFVPQRTSAYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQE 267
SG + NG + + Y + + + +TV + +
Sbjct: 57 --SGNIFINGMEVRKIRNYI--RYSTNLPEAYEIGVTVNDIVYL-------YEE------ 99
Query: 268 LSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327
L+G ++++ + +LK L L + L +S
Sbjct: 100 ------------------------LKGLDRDLFLE-MLKALKL----GEEILRRKLYKLS 130
Query: 328 GGQRKRLTTGEMLVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAV 380
GQ V + AL +DE +D++ + I +++ +
Sbjct: 131 AGQSVL-------VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE----YGKEGI 179
Query: 381 I---SLLQPAPETYELFDDLILLSDGQIVYQG--PRE----NVLEFFERMGFKCPERKGV 431
+ L + G + E +++E +
Sbjct: 180 LVTHEL----DMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMDK 235
Query: 432 ADFLQEVTSRKDQEQYWANKDEPYSFVTA 460
+ + + + Y + A
Sbjct: 236 KVSIVKGDLGMKFGAL-GSLNRIYGIIGA 263
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 8e-19
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 808 GVQSSYGEVRS----FNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDR 863
GV + + + NE Q + + F P+ I F + +D+ + P
Sbjct: 306 GVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDV-ERETLVEYPRLV 364
Query: 864 LEF----LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPK 917
++ L+ G R G + ++G +G GKTT + +LAG T G V +T++ P+
Sbjct: 365 KDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ 424
Query: 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
I TVYE L +L + E+++ + +
Sbjct: 425 ------YIK--------AEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIID 463
Query: 978 IREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037
+ + V LS + +R+ IA L+ + I +DEP++ LD V R +R+ +
Sbjct: 464 LYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518
Query: 1038 D-TGRTVV 1044
+ +T +
Sbjct: 519 EKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-13
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYVSGSITISGYPKN--Q 919
F+ + G++ ++G +G GKTT + +LAG+ S I + N Q
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 920 ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
F R+ + + +V + V L +VD + EEV++ +EL +
Sbjct: 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENVL 222
Query: 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1039
+ + LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 223 DRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277
Query: 1040 GRTVV 1044
G+ V+
Sbjct: 278 GKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 6e-13
Identities = 63/316 (19%), Positives = 103/316 (32%), Gaps = 82/316 (25%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220
+ L G I+ + ++GP GKTT + LAG G+V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLT- 418
Query: 221 MEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPD 280
+ PQ YI E TV E L+ +L+
Sbjct: 419 -VAYKPQ----YIKAEY----EGTVYELLSKI-----------DSSKLNSNFYKTE---- 454
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
+LK LG+ D V D +SGG+ +R+ L
Sbjct: 455 -----------------------LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 341 VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTA-VIS----LLQPAPETYELFD 395
+ A +DE S LD + ++R + TA V+ ++ + D
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI------DYVSD 540
Query: 396 DLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQE--VTSRKDQEQY--WANK 451
LI+ +G+ G + R+G+ FL +T R+D + ANK
Sbjct: 541 RLIVF-EGEPGRHGRALPPM----------GMREGMNRFLASVGITFRRDPDSGRPRANK 589
Query: 452 DEPYSFVTAKEFSEVF 467
+ K E +
Sbjct: 590 EGSVKDREQKARGEYY 605
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 50/226 (22%)
Query: 163 RKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME 222
R + I+K + ++GP +GKTT + LAG+L +L + +
Sbjct: 100 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSW---D 153
Query: 223 EFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD 282
+ N+L ++ E +KP
Sbjct: 154 NVI-----RAFRGNELQNYFERLKN-----------------------GEIRPVVKP-QY 184
Query: 283 IDLIMKAAS------LEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTT 336
+DL+ KA L+ ++ + V+K L LE D + +SGG+ +R+
Sbjct: 185 VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAI 239
Query: 337 GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILN-GTAVI 381
L+ A F DE S+ LD ++ +R + N G AV+
Sbjct: 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR---RLANEGKAVL 282
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-18
Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 37/254 (14%)
Query: 808 GVQSSYGEV---RSFNEADQNRKRGMILPFEPHSITFDDIRYALDMPQEMKAQGIPDDRL 864
G S YG V + N +G LP E I D+I++ L ++ ++
Sbjct: 212 GESSVYGRVSKSYAARVGINNFLKGY-LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKM 270
Query: 865 EF-----------LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITIS 913
++ L +G + G + ++G +G GKTT +L G T GS+T
Sbjct: 271 KWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPE 328
Query: 914 GYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV 973
+I Y Q + TV + +L + T F EEV + +
Sbjct: 329 K---------QILSYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRL 373
Query: 974 ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1033
L+ + E+ V + LS + ++L IA L + +D+P+S LD IV + +
Sbjct: 374 NLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428
Query: 1034 RNTVDTGRTVVCTI 1047
+ + V I
Sbjct: 429 KRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 36/187 (19%), Positives = 77/187 (41%), Gaps = 27/187 (14%)
Query: 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDI 934
+ + ++G +G GKTT++ +LAG + + E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRG----KEI 74
Query: 935 HSPHVTVYESLVYSAWLRL---PPEVDSDTRKMF--VEEVMELVELNPIREALVGLPGVS 989
++ Y +YS L++ V+ ++ + V E++ ++ ++ + L ++
Sbjct: 75 YN-----YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMT 129
Query: 990 G--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1041
LS +RL +A L+ + D+P+S LD R + + +R + +
Sbjct: 130 NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NK 188
Query: 1042 TVVCTIH 1048
V+ H
Sbjct: 189 YVIVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 54/293 (18%), Positives = 97/293 (33%), Gaps = 78/293 (26%)
Query: 162 SRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221
+K L +G K + +LGP GKTT L G++ D G VT
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK--- 329
Query: 222 EEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
+ +Y Q + TV++ L +++ + +E
Sbjct: 330 ------QILSYKPQRIFPNYDGTVQQYLENASK-DALSTSSWFFEE-------------- 368
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
V K L L ++ V D +SGG+ ++L L
Sbjct: 369 ----------------------VTKRLNLHRLLESNVND-----LSGGELQKLYIAATLA 401
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTA-VIS----LLQPAPETYELFDD 396
A +D+ S+ LD Y + ++++ +I + + D
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD------YIADR 455
Query: 397 LILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQE--VTSRKDQEQY 447
+I+ G+ G + + + G+ +FL+E VT R+D E
Sbjct: 456 IIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 52/316 (16%), Positives = 97/316 (30%), Gaps = 68/316 (21%)
Query: 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL-KFSGRVTYNGHGMEEFVPQRTSAYIS 234
K + +LG GKTT+L LAG++ + + +V
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGK----------DEVLKRFR 70
Query: 235 QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAAS--- 291
++ Y +EL E K ++ K
Sbjct: 71 GKEI-----------------------YNYFKELYSNELKIVHKI-QYVEYASKFLKGTV 106
Query: 292 ---LEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348
L ++ D V ++L + + +SGG +RL L+ A
Sbjct: 107 NEILTKIDERGKKDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYI 161
Query: 349 MDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI------SLLQPAPETYELFDDLILLSD 402
D+ S+ LD + ++R+ +L VI +L L D + ++
Sbjct: 162 FDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVLD------YLTDLIHIIYG 212
Query: 403 GQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTAKE 462
VY + + R+G + +L + ++ E +K+
Sbjct: 213 ESSVYGRVSK---SYAARVGINNFLKG----YLPAENMKIRPDEIKFMLKEVSDLDLSKD 265
Query: 463 FSEVFQSFHIGQKLGD 478
+ I +KLGD
Sbjct: 266 LKTKMKWTKIIKKLGD 281
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 52/247 (21%), Positives = 97/247 (39%), Gaps = 36/247 (14%)
Query: 808 GVQSSYGEVRSFNEADQNRKRGMI----LPFEPHSITFDDI--RYALDMPQEMKAQGIPD 861
GV + + + RG + + F P+ I F R ++ + +
Sbjct: 236 GVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVK 295
Query: 862 DRLEF-LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKN 918
D F L+ G + G + ++G +G GKTT + +LAG T G + +T++ K
Sbjct: 296 DYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKP 353
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
Q I TVYE L + E+++ + + +
Sbjct: 354 Q----YIK--------ADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDL 394
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038
+ V + LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++
Sbjct: 395 YDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 449
Query: 1039 -TGRTVV 1044
+T +
Sbjct: 450 KNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 14/186 (7%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYVSGSITISGYPKN-- 918
F+ + G++ ++G +G GK+T + +LAG+ G S I + N
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
Q F ++ + + +V + V + L + D + +EEV++ +EL +
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENV 151
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038
E + LS + +R+ IA L+ N + F DEP+S LD R R +R +
Sbjct: 152 LEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 1039 TGRTVV 1044
G++V+
Sbjct: 207 EGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 8e-12
Identities = 62/323 (19%), Positives = 104/323 (32%), Gaps = 82/323 (25%)
Query: 134 IGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPL--TILHDVSGIIKPQRLTLLLGPPSS 191
+ R F +E L P K L G IK + ++GP
Sbjct: 264 VRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGI 323
Query: 192 GKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAF 251
GKTT + LAG G++ ++ + PQ YI + E TV E L+
Sbjct: 324 GKTTFVKMLAGVEEPT---EGKIEWDLTVA--YKPQ----YIKAD----YEGTVYELLSK 370
Query: 252 SARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE 311
+L+ + LK LG+
Sbjct: 371 I-----------DASKLNSNFYKTEL---------------------------LKPLGII 392
Query: 312 VCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQS 371
D V + +SGG+ +R+ L+ A +DE S LD + ++R
Sbjct: 393 DLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 372 IHILNGTA-VIS----LLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCP 426
+ TA V+ ++ + D L++ +G+ G +
Sbjct: 448 MEKNEKTALVVEHDVLMID------YVSDRLMVF-EGEPGKYGRALPPM----------G 490
Query: 427 ERKGVADFLQE--VTSRKDQEQY 447
R+G+ FL +T R+D +
Sbjct: 491 MREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-06
Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 56/220 (25%)
Query: 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSA 231
++K + ++GP +GK+T + LAG+L
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL--------------------------- 71
Query: 232 YISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD---IDLIMK 288
+L + + R LQ + K I+P +DLI K
Sbjct: 72 ---IPNLCGDNDSWDGVIR--------AFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPK 120
Query: 289 AA------SLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG 342
A L+ ++ + V+K L LE + + +SGG+ +R+ L+
Sbjct: 121 AVKGKVIELLKKADETGKLEEVVKALELENVLEREIQH-----LSGGELQRVAIAAALLR 175
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLRQSIHILN-GTAVI 381
A F DE S+ LD ++R + G +V+
Sbjct: 176 NATFYFFDEPSSYLDIRQRLNAARAIR---RLSEEGKSVL 212
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 2e-17
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 41/242 (16%)
Query: 838 SITFDDI--RYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMD 895
I ++ + P E KA L+ VS G + G +G+GK+TL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 896 VLAG--RKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPH-----VTVYESLVYS 948
++AG T SG + G K R G Q P V++ + ++
Sbjct: 52 IVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQ----YPEDQFFAERVFDEVAFA 103
Query: 949 AWLRLPPE---VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVEL 1005
+ D D + V++ ME V L+ ++ LS +++R+ IA +
Sbjct: 104 ------VKNFYPDRDPVPL-VKKAMEFVGLDF--DSFKDRV-PFFLSGGEKRRVAIASVI 153
Query: 1006 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065
V P I+ +DEP GLD ++R V G+TV+ H + + D +++++
Sbjct: 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLE 212
Query: 1066 RG 1067
+G
Sbjct: 213 KG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 53/258 (20%), Positives = 92/258 (35%), Gaps = 58/258 (22%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-- 227
L +VS +I L+ G SGK+TLL +AG + SG V Y+ G + +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYD--GERKKGYEIR 77
Query: 228 RTSAYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
R Q + V + +AF + N PD D
Sbjct: 78 RNIGIAFQYPEDQFFAERVFDEVAF-------AVK--------------NFYPDRDP--- 113
Query: 287 MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG-----ISGGQRKRLTTGEMLV 341
V ++ +GL+ + + +SGG+++R+ ++V
Sbjct: 114 ---------VPLV--KKAMEFVGLDF--------DSFKDRVPFFLSGGEKRRVAIASVIV 154
Query: 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401
L +DE GLD ++ + + G VI + D +++L
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVINHVDRVVVLE 212
Query: 402 DGQIVYQGPRENVLEFFE 419
G+ V+ G R LE ++
Sbjct: 213 KGKKVFDGTRMEFLEKYD 230
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.5 bits (208), Expect = 2e-16
Identities = 91/640 (14%), Positives = 173/640 (27%), Gaps = 198/640 (30%)
Query: 125 HLNVE-AEAYIGSRALPTVFNSCANMLEGF---LNYLHVLPSRKKPLTILHDVSGIIK-P 179
H++ E E + + +VF + F + V K L+ ++ II
Sbjct: 6 HMDFETGEHQYQYKDILSVF------EDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSK 58
Query: 180 QR-------LTLLLGPPSSGKTTLLLALAGKLGKDLKF---SGRVTYNGHGM--EEFVPQ 227
LL S + + + L + KF + M ++ Q
Sbjct: 59 DAVSGTLRLFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 228 RTSAYISQNDLHI-GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
R Y ND + + V R + +L R+ ++P ++ +
Sbjct: 116 RDRLY---NDNQVFAKYNV--------------SRLQPYLKL--RQALLELRPAKNVLID 156
Query: 287 -MKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI---SGGQRKRLTTGEMLVG 342
+ G K + L+VC V +M I + + E ++
Sbjct: 157 GVL-----GSGKTW--------VALDVCLSYKVQCKMDFKIFWLNLKNCN---SPETVLE 200
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402
+ L +D + T + +S + I + A + L + YE + L++L +
Sbjct: 201 MLQKLLYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YE--NCLLVLLN 252
Query: 403 GQIVYQGPRENVLEFFERMGFKCP----ER-KGVADFLQ-EVTSRKDQEQYWANKDEPYS 456
V F C R K V DFL T+ + +
Sbjct: 253 ---VQ---NAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLD------HHSMT 297
Query: 457 FVTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAALTTKKYGASKKELLKACFAR-EY 515
T E + + + + D P + ++P L+ S ++ L A +
Sbjct: 298 L-TPDEVKSLLLKY-LDCRPQDL---PREVLTTNPRRLSI--IAESIRDGL----ATWDN 346
Query: 516 LLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVITIMFNGF 575
+S+ L +R +F
Sbjct: 347 WKH------VNCDKLTTIIESSLN---VLEPAEYR-----------KMF----------- 375
Query: 576 SELSMTIMKLPVFYKQRDFLFFPAWAYSLPTWILKIPITFIEVGIWVFMTYYVVGFESNI 635
FP A IP + + IW + V +
Sbjct: 376 ----------------DRLSVFPPSA--------HIPTILLSL-IWFDVIKSDV--MVVV 408
Query: 636 ERFVKQYFLLLCVNQTASGLFRLMG-------------ALGRNIIVANTFGSFANLTVLV 682
+ K L Q + AL R+I+ +
Sbjct: 409 NKLHKY---SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV-----DHYNIPKTFD 460
Query: 683 LGGFILSRDDVKKWWLWGYWFSPMMY----GQNALAVNEF 718
I D Y++S + + ++ + F
Sbjct: 461 SDDLIPPYLD-------QYFYSHIGHHLKNIEHPERMTLF 493
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 5e-16
Identities = 84/616 (13%), Positives = 176/616 (28%), Gaps = 190/616 (30%)
Query: 75 IKNLGFIERRNLIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEV-------RF--EH 125
+ N + +++ + +L E D+ ++ KD + T+ +F E
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 126 LNVE--------AEAYIGSRALPTVFNSCANMLEG----FLNYLHVLPSRKKPLTILHDV 173
L + + ++ + L F Y +V SR +P L
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NV--SRLQPYLKLRQA 143
Query: 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYI 233
++P + L+ G SGKT + L + K ++ +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----------------- 186
Query: 234 SQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRR-EKAANIKPDPDIDLIMKAASL 292
L++ C E+LQ+L + + + D ++ ++ S+
Sbjct: 187 ----LNLK------------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 293 EGQEK----------------NVVTDYVLKILGLEVC-----------ADTMVGDEMLRG 325
+ + + NV L C D +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHI 289
Query: 326 ISGGQRKRLTTGEML--------------------VGP-ARALFMDEISTGLDSSTTYQI 364
LT E+ P ++ + I GL + ++
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 365 VNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD-------------GQIVYQGPR 411
VN + + I+ + +++L+PA E ++FD L + ++
Sbjct: 350 VNCDKLT-TIIESS--LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV- 404
Query: 412 ENVLEFFERMGF----KCPERKGVADFLQEVTSRKDQ---------EQY-----WANKDE 453
V+ + + E+ + + + Y + + D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 454 P--------YSFV-----------TAKEFSEVFQSFH-IGQKLGDELATPFDKSKSHPAA 493
YS + F VF F + QK+ + +T ++ S S
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNT 523
Query: 494 LTT-KKYGASKKELLKACFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRST 552
L K Y K + E L+ N+ + F + + ++ +
Sbjct: 524 LQQLKFY---KPYICDNDPKYERLV---NAILDFLPKIE---------ENLICSK-YTDL 567
Query: 553 V------EDGGIYMGA 562
+ ED I+ A
Sbjct: 568 LRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-08
Identities = 93/587 (15%), Positives = 175/587 (29%), Gaps = 163/587 (27%)
Query: 767 FLFTVALKYLDPFGKPQAILS---EEALAK-----KNACKTE--EPVELSSGVQSSYGEV 816
LF L K + ++ EE L + KTE +P S + Y E
Sbjct: 66 RLFWTLLS------KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQ 115
Query: 817 RSFNEADQNRKRGMILPFEPHSIT----FDDIRYALDMPQEMKAQGIPDDRLEFLKGVSG 872
R +R F ++++ + +R AL E+
Sbjct: 116 R-------DRLYNDNQVFAKYNVSRLQPYLKLRQAL---LEL------------------ 147
Query: 873 AFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYVSGSI---TISGYPKNQETFARISGY 928
RP + GV G+GKT + +DV K + I + + +
Sbjct: 148 --RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 929 CEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988
Q D P+ T +S+ ++L + E+ L++ P L+ L V
Sbjct: 206 LYQID---PNWTSRSD--HSSNIKLRIH---SIQ----AELRRLLKSKPYENCLLVLLNV 253
Query: 989 SG-------------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL-DARAAAIVMRTVR 1034
L T + K++T + A + I +D + L +++++ +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 1035 NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLG----RH--CSQLI---- 1084
V T + + I E I G +H C +L
Sbjct: 313 CRPQDLPREVLTTNPRRLSII------------AESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 1085 ------------KYFE--GI--DGVPKIKEGYNPATWMLEVTTPAQEAALGINFAKVYKN 1128
K F+ + I W + + K++K
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVV-----NKLHKY 414
Query: 1129 SELYKGNKEMIKELSIPPPGSKNLYFQTRYSQSFFTQCMACLWKQHLSYWRNPPYTAVRL 1188
S + K KE +SIP ++Y + + L + + + Y +
Sbjct: 415 SLVEKQPKEST--ISIP-----SIYLELKVKLENEYA----LHRSIVDH-----YNIPKT 458
Query: 1189 FFTTFIAL--MFGTIFWDIG--SKRANRQDLFNAMGSMYAAILFLGVQNATSVQPVVAVE 1244
F + + + + IG K + ++ FL E
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--------------E 504
Query: 1245 RTVFYRERAAGMYSALPYAFGQVVIELPHIFIQAVIYGVIVYAMIGF 1291
+ + + A ++ Q+ P+I Y +V A++ F
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 4e-04
Identities = 88/639 (13%), Positives = 169/639 (26%), Gaps = 219/639 (34%)
Query: 348 FMDEISTGLDSSTTYQIVNSLRQSI------HILNGTAVISLLQPAPE--TYELFDDLIL 399
F D D + + + + HI+ T LF L
Sbjct: 25 FEDAFVDNFD---CKDVQDMPKSILSKEEIDHIIM--------SKDAVSGTLRLFW--TL 71
Query: 400 LSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRK--DQEQYWANKDEPYSF 457
LS + + Q E VL K + ++ + Y +D Y+
Sbjct: 72 LSKQEEMVQKFVEEVLR---------INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 458 VTAKEFSEVFQSFHIGQKLGDELATPFDKSKSHPAALTTKKY-------GASKKEL-LKA 509
+VF +++ + P+ K + L K G+ K + L
Sbjct: 123 N------QVFAKYNVSRL------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 510 CFAREYLLMKRNSFVYFFKMFQIFFSASVAMTLFLRTEMHRSTVEDGGIYMGALFFAVIT 569
C Y + + F +IF+ + + + + M I
Sbjct: 171 C--LSYKVQCKMDF-------KIFW-----LN------LKNCNSPETVLEMLQKLLYQID 210
Query: 570 IMFNGFSELSMTIMKLPVFYKQRDFLFFPAWAY--SL-------PTWIL-------KIPI 613
+ S+ S I + + Y L KI +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 614 TFIEVGIWVFM---TYYVVGFESNIERFVKQY---FLLLCVNQTASGLFR---------- 657
T + F+ T + + + LL ++ L R
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 658 -LMGALGRNIIVANTFGSFANLTVLVLGGFI------LSRDDVKKWW------------- 697
++ R+ + T+ ++ ++ L I L + +K +
Sbjct: 331 SIIAESIRDGL--ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 698 ------LWGYWFSPMMYGQNALAVNEFLGKS----WGHVPPNSTEPLGVVILKSR----- 742
+W ++ + VN+ S P ST + + L+ +
Sbjct: 389 TILLSLIWFD----VIKSDVMVVVNKLHKYSLVEKQ---PKESTISIPSIYLELKVKLEN 441
Query: 743 ---------------------GLFPNA---YWYWIGVGALLGY----------VLLFNFL 768
L P Y+Y +G+ + LF +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLFRMV 496
Query: 769 FTVALKYLD-PFGKPQAILSEEALAKKNACKTEEPVELSSGVQSSYGEVRSF------NE 821
+LD F L +K S + ++ +++ + N+
Sbjct: 497 ------FLDFRF-----------LEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 822 ADQNRKRGMILPF----EPHSIT--FDDI-RYALDMPQE 853
R IL F E + I + D+ R AL E
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 27/201 (13%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YVSGSITISGYPKNQE 920
E LKG+S + + G +++G SG+GK+TL+ +L T G + + +
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 921 TFAR---ISGYCEQTDIHS--PHVTVYES----LVYSAWLRLPPEVDSDTRKMFVEEVME 971
+ R + G+ Q H P +T E+ ++ K E ++
Sbjct: 77 SLLRNRKL-GFVFQF--HYLIPELTALENVIVPMLKM-------GKPKKEAKERGEYLLS 126
Query: 972 LVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031
+ L + L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 127 ELGLG---DKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD 181
Query: 1032 TVRNTVDTGRTVVCTIHQPSI 1052
+ G ++V H+ +
Sbjct: 182 IFLKINEGGTSIVMVTHEREL 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 22/207 (10%)
Query: 858 GIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YVSGSITISG 914
+ ++ + LK V+ + G ++MG SG+GK+T+++++ + T G +I +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 915 YPKNQETFAR---ISGYCEQTDIHSPHVTVYES----LVYSAWLRLPPEVDSDTRKMFVE 967
++ T R I G+ Q P +T E+ L++ + E R+
Sbjct: 72 LDDDELTKIRRDKI-GFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE----ERRKRAL 126
Query: 968 EVMELVELNPIREALVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
E +++ EL E P + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 127 ECLKMAELE---ERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 1027 AIVMRTVRN-TVDTGRTVVCTIHQPSI 1052
+M+ ++ + G+TVV H ++
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 3e-14
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 38/218 (17%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP--KNQETF 922
LKG++ + G +TA++G +G GK+TL G + + SG I P +++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 923 ARIS---GYCEQ---TDIHSPHVTVYESLVYSAWLRLPPE---VDSDTRKMFVEEVMELV 973
++ G Q + S +VY+ + + + D + V+ ++
Sbjct: 80 MKLRESIGIVFQDPDNQLFSA--SVYQDVSFG------AVNMKLPEDEIRKRVDNALKRT 131
Query: 974 ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1033
+ +++ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 GIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 1034 RN-TVDTGRTVVCTIHQPSIDIFDAF---DELLLMKRG 1067
+ G T++ H DI D + +MK G
Sbjct: 187 VEMQKELGITIIIATH----DIDIVPLYCDNVFVMKEG 220
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 4e-11
Identities = 54/282 (19%), Positives = 103/282 (36%), Gaps = 62/282 (21%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRT 229
L ++ IK +T +LG GK+TL G L SGR+ ++ ++ ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 230 SAYISQNDLHIG-----------EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIK 278
+ + IG +V + ++F A + E+ +R A
Sbjct: 79 IMKLRE---SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA--- 127
Query: 279 PDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGE 338
LK G+E D +S GQ+KR+
Sbjct: 128 --------------------------LKRTGIEHLKDKPTHC-----LSFGQKKRVAIAG 156
Query: 339 MLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398
+LV + L +DE + GLD +I+ L + + G +I D++
Sbjct: 157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPLYCDNVF 215
Query: 399 LLSDGQIVYQGPRENVL---EFFERMGFKCPERKGVADFLQE 437
++ +G+++ QG + V E ++ + P + + L+E
Sbjct: 216 VMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 9e-13
Identities = 65/260 (25%), Positives = 109/260 (41%), Gaps = 64/260 (24%)
Query: 832 LPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKT 891
L F+ I F+++ ++ D E L+ VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 892 TLM-------DVLAGRKTGGYVSGSITISGYPKNQETFA---RISGYCEQTDIHSPHVTV 941
T++ D+ SG I I G +Q T A G Q D + T+
Sbjct: 95 TILRLLFRFYDI---------SSGCIRIDGQDISQVTQASLRSHIGVVPQ-DTVLFNDTI 144
Query: 942 YESLVY---SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP----------GV 988
+++ Y +A + +EV + I +A++ P G+
Sbjct: 145 ADNIRYGRVTA---------GN------DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGL 189
Query: 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1048
LS +++R+ IA ++ P II +DE TS LD + ++ V RT + H
Sbjct: 190 K-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAH 247
Query: 1049 QPSIDIFDAFDELLLMKRGG 1068
+ S + +A D++L++K G
Sbjct: 248 RLST-VVNA-DQILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 77/373 (20%), Positives = 127/373 (34%), Gaps = 141/373 (37%)
Query: 78 LGFI--ERRNLI--ERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAY 133
G + I E + + +E+ E +KD L + FE+++ +Y
Sbjct: 12 SGLVPRGSHMFIDMENMFDLLKEETE-----VKDLPGAGPLRFQKGRIEFENVHF---SY 63
Query: 134 IGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGK 193
R L DVS + P + L+GP +GK
Sbjct: 64 ADGR------------------------------ETLQDVSFTVMPGQTLALVGPSGAGK 93
Query: 194 TTLLLALAGKLGKDLKF----SGRVTYNGHGMEEF-----------VPQRTSAYISQNDL 238
+T+L L +F SG + +G + + VPQ T + ND
Sbjct: 94 STILRLL-------FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF---ND- 142
Query: 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKN 298
T+ + + + R EV E AA +AA +
Sbjct: 143 -----TIADNIRY-GRVTA--GNDEV-------EAAA------------QAAGIHD---- 171
Query: 299 VVTDYVLKILGLEVCADTMVGDEMLRG--ISGGQRKRLTTGEMLVGPARA-------LFM 349
I+ T VG+ RG +SGG+++R V AR + +
Sbjct: 172 -------AIMAFPEGYRTQVGE---RGLKLSGGEKQR-------VAIARTILKAPGIILL 214
Query: 350 DEISTGLDSSTTYQIVNSLRQSIHILNG--TAVI----SLLQPAPETYELFDDLILLSDG 403
DE ++ LD+S I SL + + T V+ S + A D ++++ DG
Sbjct: 215 DEATSALDTSNERAIQASLAK---VCANRTTIVVAHRLSTVVNA-------DQILVIKDG 264
Query: 404 QIVYQGPRENVLE 416
IV +G E +L
Sbjct: 265 CIVERGRHEALLS 277
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 45/204 (22%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV--SGSIT-----ISGYPKNQ 919
L GVS + G +T ++G +G+GK+TL++V+ TG G + I+ +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVI----TGFLKADEGRVYFENKDITNKEPAE 78
Query: 920 -------ETFARISGYCEQTDIHS-PHVTVYE-----------SLVYSAWLRLPPEVDSD 960
TF QT +TV E S + S + + + +
Sbjct: 79 LYHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 961 TRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020
+ +++E ++L+ + + G LS Q K + I L+ NP +I MDEP +G
Sbjct: 130 MVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 1021 LDARAAAIVMRTVRNTVDTGRTVV 1044
+ A + V G T +
Sbjct: 184 VAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 52/216 (24%), Positives = 78/216 (36%), Gaps = 49/216 (22%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
L VS + +TL++GP SGK+TL+ + G L D GRV + + P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 227 -QRTSAYIS---QNDLHI-GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDP 281
+ I Q EMTV E L C G P + + ++ ++
Sbjct: 77 AELYHYGIVRTFQT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--- 132
Query: 282 DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341
KA + L+ L L D G+ +SGGQ K + E+
Sbjct: 133 ------KAFKI------------LEFLKLSHLYDRKAGE-----LSGGQMKLV---EI-- 164
Query: 342 GPARAL-------FMDEISTGLDSSTTYQIVNSLRQ 370
RAL MDE G+ + I N + +
Sbjct: 165 --GRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 64/285 (22%), Positives = 114/285 (40%), Gaps = 88/285 (30%)
Query: 839 ITFDDI--RYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 896
ITF +I RY D L ++ + + G + ++G SG+GK+TL +
Sbjct: 8 ITFRNIRFRY-------------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 897 LAGRKTGGYV--SGSITISGY------PK---------NQET--FARISGYCEQTDIHSP 937
+ Y+ +G + I G+ P Q+ R
Sbjct: 55 IQRF----YIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR------------- 97
Query: 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP----------G 987
++ +++ + P + E+V+ +L + + L G
Sbjct: 98 --SIIDNISLAN-----PGMSV-------EKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1047
LS QR+R+ IA LV NP I+ DE TS LD + ++MR + GRTV+
Sbjct: 144 AG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIA 201
Query: 1048 HQPSIDIFDAFDELLLMKRGG--EEIYVGPLGRHCSQLIKYFEGI 1090
H+ S + +A D +++M++G E+ G+H +L+ E +
Sbjct: 202 HRLST-VKNA-DRIIVMEKGKIVEQ------GKH-KELLSEPESL 237
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 66/262 (25%), Positives = 107/262 (40%), Gaps = 79/262 (30%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTL--LLALAGKLGKDLKF----SGRVTYNGHGM 221
IL +++ IK + ++G SGK+TL L+ +F +G+V +GH
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---------QRFYIPENGQVLIDGH-- 71
Query: 222 EEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQ-GVGPRYEVLQE--LSRREKAANI- 277
D + R Q GV VLQ+ L R NI
Sbjct: 72 ---------------D--LALADPN-----WLRRQVGV-----VLQDNVLLNRSIIDNIS 104
Query: 278 --KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI--SGGQRKR 333
P ++ ++ AA L G D+ I L +T+VG+ +G SGGQR+R
Sbjct: 105 LANPGMSVEKVIYAAKLAG-----AHDF---ISELREGYNTIVGE---QGAGLSGGQRQR 153
Query: 334 LTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNG--TAVI----SLLQPA 387
+ LV + L DE ++ LD + + I+ ++ + I G +I S ++ A
Sbjct: 154 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAHRLSTVKNA 210
Query: 388 PETYELFDDLILLSDGQIVYQG 409
D +I++ G+IV QG
Sbjct: 211 -------DRIIVMEKGKIVEQG 225
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 58/266 (21%)
Query: 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 897
+I F D+ ++ + LK ++ G AL+G +G+GK+T+ +L
Sbjct: 17 NIEFSDVNFSYPKQTNHRT----------LKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 898 AGRKTGGY-VSGSITISGYP---KNQETFARISGYCEQTDIHSPHVTVYESLVY---SAW 950
R Y G I I G N+ + I G Q D + T+ +++Y A
Sbjct: 67 Y-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQ-DTILFNETIKYNILYGKLDA- 120
Query: 951 LRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP-------GVSG--LSTEQRKRLTI 1001
+D EEV++ + + + + LP G G LS +R+R+ I
Sbjct: 121 --------TD------EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAI 166
Query: 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061
A L+ +P I+ DE TS LD++ + + V + + RT++ H+ S I A + +
Sbjct: 167 ARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESI 223
Query: 1062 LLMKRGG--EEIYVGPLGRHCSQLIK 1085
+L+ +G E+ G H L+K
Sbjct: 224 ILLNKGKIVEK------GTH-KDLLK 242
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 55/272 (20%), Positives = 101/272 (37%), Gaps = 86/272 (31%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKF---SGRVTYNGHGMEEF 224
L ++ I L+G SGK+T+ L +F G + G + +
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL-------YRFYDAEGDIKIGGKNVNK- 85
Query: 225 VPQRTSAYISQNDL--HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI---KP 279
++N + IG + ++T+ F+ + + NI K
Sbjct: 86 --------YNRNSIRSIIG-IVPQDTILFNE---------------TIKY---NILYGKL 118
Query: 280 DPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI--SGGQRKRLTTG 337
D + ++KA I L DT+VG+ +G+ SGG+R+R
Sbjct: 119 DATDEEVIKATKSAQLYD--------FIEALPKKWDTIVGN---KGMKLSGGERQR---- 163
Query: 338 EMLVGPARA-------LFMDEISTGLDSSTTYQIVNSLRQSIHILNG--TAVI----SLL 384
+ AR + DE ++ LDS T Y ++ + +I S +
Sbjct: 164 ---IAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED---LRKNRTLIIIAHRLSTI 217
Query: 385 QPAPETYELFDDLILLSDGQIVYQGPRENVLE 416
A + +ILL+ G+IV +G +++L+
Sbjct: 218 SSA-------ESIILLNKGKIVEKGTHKDLLK 242
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 35/223 (15%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--VSGSITISGYP-- 916
DD + L+ +S +P + A G SG GK+T+ +L R Y +G ITI G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RF---YQPTAGEITIDGQPID 67
Query: 917 -KNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
+ E + G+ Q D T+ E+L Y L + +D E++ ++++L
Sbjct: 68 NISLENWRSQIGFVSQ-DSAIMAGTIRENLTYG----LEGDY-TD------EDLWQVLDL 115
Query: 976 NPIREALVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025
R + +P GV +S QR+RL IA + NP I+ +DE T+ LD+ +
Sbjct: 116 AFARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 1026 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068
++V + + +++ GRT + H+ S I DA D++ +++G
Sbjct: 175 ESMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKGQ 214
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 59/260 (22%), Positives = 98/260 (37%), Gaps = 76/260 (29%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTL--LLALAGKLGKDLKF----SGRVTYNGHGME 222
IL D+S +P + GP GK+T+ LL +F +G +T +G ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL---------ERFYQPTAGEITIDGQPID 67
Query: 223 EFVPQ--RTS-AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEV-LQELSRREKAANIK 278
+ R+ ++SQ D I T+RE L + G + ++L + A +
Sbjct: 68 NISLENWRSQIGFVSQ-DSAIMAGTIRENLTY-------GLEGDYTDEDLWQVLDLAFAR 119
Query: 279 PDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI--SGGQRKRLTT 336
+ + +T VG+ RG+ SGGQR+RL
Sbjct: 120 -----SFVENMP--DQ--------L-----------NTEVGE---RGVKISGGQRQRLAI 150
Query: 337 GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNG--TAVI----SLLQPAPET 390
+ + L +DE + LDS + + +L ++ G T VI S + A
Sbjct: 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAHRLSTIVDA--- 204
Query: 391 YELFDDLIL-LSDGQIVYQG 409
D I + GQI G
Sbjct: 205 -----DKIYFIEKGQITGSG 219
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 1e-10
Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 26/163 (15%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR 924
L + + G +G GK+TLM +A + G+ + + R
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPT--------QEE----CR 496
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984
D +V + + E T++ +++ + + ++
Sbjct: 497 TVYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFT---DEMIA 543
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027
+P +S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 544 MP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 47/315 (14%), Positives = 88/315 (27%), Gaps = 81/315 (25%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVT----- 215
P KP + D++ ++GP +GK+TL+ L G+L SG V
Sbjct: 682 PGTSKP--QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHENC 736
Query: 216 ----YNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQG-------------V 258
H RET+ + R
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIE 796
Query: 259 GPRYEVLQELSRREKAANIKPDPDIDLIMKAAS---------------------LEGQEK 297
G + SRR+ + + L +E K
Sbjct: 797 GTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSK 856
Query: 298 NV-----------------VTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
V + + + +V +RG+SGGQ+ +L
Sbjct: 857 MVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGT 916
Query: 341 VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI-----SLLQPAPETYELFD 395
+ +DE + LD + + +L +++ G +I + L +
Sbjct: 917 WQRPHLIVLDEPTNYLDRDS----LGALSKALKEFEGGVIIITHSAEFTK------NLTE 966
Query: 396 DLILLSDGQIV-YQG 409
++ + DG++
Sbjct: 967 EVWAVKDGRMTPSGH 981
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 960 DTRKMFVEEVMELVELNPIREAL--VGLPG-------VSGLSTEQRKRLTIAVELVANPS 1010
D ++ + I E +GL + GLS Q+ +L +A P
Sbjct: 862 DMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPH 921
Query: 1011 IIFMDEPTSGLD 1022
+I +DEPT+ LD
Sbjct: 922 LIVLDEPTNYLD 933
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 881 ALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYP-KNQETFARISGYCEQTDIHSP 937
L+G +GAGK+ ++++AG + G + ++G R G+ Q P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPD----RGEVRLNGADITPLPPERRGIGFVPQDYALFP 83
Query: 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997
H++VY ++ Y LR V+ D R V E+ E + + + + + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 998 RLTIAVELVANPSIIFMDEPTSGLDAR 1024
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 4e-10
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 45/178 (25%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L +S + PG + ++G SG GKTTL+ LAG + SG I++SG
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD----SGEISLSG--------KT 67
Query: 925 ISGYCEQTDIHS-------------PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVME 971
I + PH+TVY ++ Y R +E ++E
Sbjct: 68 IFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR---IEAMLE 124
Query: 972 LVELNPIREALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
L G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 125 LT----------GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 5e-10
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 31/169 (18%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQ-ETFA 923
++GVS R G + L+G SG+GKTT++ ++AG R T G + I G
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT----KGDVWIGGKRVTDLPPQK 86
Query: 924 RISGYCEQTDIHS--------PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
R ++ H+TVY+++ + + P+ + D R V E++ + L
Sbjct: 87 R--------NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRL 135
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 136 ESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 48/254 (18%), Positives = 88/254 (34%), Gaps = 67/254 (26%)
Query: 838 SITFDD--IRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMD 895
+T D +Y L+ +S + PG L+G +G+GK+TL+
Sbjct: 19 QMTVKDLTAKYTEGGNA-------------ILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 896 VLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS-------PHVTVY--ESLV 946
G I I G S V + +
Sbjct: 66 AFLRLL---NTEGEIQIDG-----------------VSWDSITLEQWRKAFGVIPQKVFI 105
Query: 947 YSAWLRL---PPEVDSDTRKMFVEEVMELVELNPIREALVGLP---------GVSGLSTE 994
+S R P SD + +V + V L R + P G LS
Sbjct: 106 FSGTFRKNLDPNAAHSDQE---IWKVADEVGL---RSVIEQFPGKLDFVLVDGGCVLSHG 159
Query: 995 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID- 1053
++ + +A +++ I+ +DEP++ LD I+ RT++ TV+ + I+
Sbjct: 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEAR--IEA 216
Query: 1054 IFDAFDELLLMKRG 1067
+ + D+ L+++
Sbjct: 217 MLEC-DQFLVIEEN 229
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L V+ G ++G SGAGKTT M ++AG +G + +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVP 78
Query: 927 GYCEQTDIHS--------PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI 978
E I P++T +E++ + + + R VEEV ++++++ +
Sbjct: 79 P--EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHHV 133
Query: 979 REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 134 LNHF---P--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 60/196 (30%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL----GKDLKFSGRVTYNGHGMEE 223
L +V+ I+ +LGP +GKTT + +AG L +L F R+ +G
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLV-ASNGKLI 76
Query: 224 FVPQ-RTSAYISQN-DL--HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKP 279
P+ R + Q L + +T E +AF +
Sbjct: 77 VPPEDRKIGMVFQTWALYPN---LTAFENIAFPLTNMKM--------------------S 113
Query: 280 DPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML----RGISGGQRKRLT 335
+I K V + V KIL + +L R +SG Q++R+
Sbjct: 114 KEEIR------------KRV--EEVAKILDIH---------HVLNHFPRELSGAQQQRVA 150
Query: 336 TGEMLVGPARALFMDE 351
LV L +DE
Sbjct: 151 LARALVKDPSLLLLDE 166
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 7e-09
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 36/217 (16%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--VSGSITISGYPKNQETFAR 924
L+G+S + G AL+G SG GK+T++ +L R Y ++GS+ + G Q
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RF---YDPMAGSVFLDGKEIKQ---LN 1101
Query: 925 ISGYCEQTDIHS--PHV---TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR 979
+ Q I S P + ++ E++ Y R+ EE++ + I
Sbjct: 1102 VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY----------EEIVRAAKEANIH 1151
Query: 980 EALVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1030
+ + LP G G LS Q++R+ IA LV P I+ +DE TS LD + +V
Sbjct: 1152 QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQ 1211
Query: 1031 RTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ + GRT + H+ S I +A D +++++ G
Sbjct: 1212 EAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1041
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGR 576
Query: 1042 TVVCTIHQPSIDIFDAFDELLLMKRG 1067
T + H+ S + +A D + G
Sbjct: 577 TTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 63/304 (20%), Positives = 105/304 (34%), Gaps = 100/304 (32%)
Query: 163 RKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK---DLKFSGRVTYNGH 219
+ L+ ++ I L ++G GK++LL AL ++ K + G V Y
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAY--- 70
Query: 220 GMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKP 279
VPQ A+I QN ++RE + F G + E
Sbjct: 71 -----VPQ--QAWI-QN------DSLRENILF-------GCQLEE----PYYRSV----- 100
Query: 280 DPDIDLIMKAASLEGQEKNVVTDYVLKIL--GLEVCADTMVGDEMLRGI--SGGQRKRLT 335
++A +L D L+IL G T +G+ +G+ SGGQ++R
Sbjct: 101 -------IQACALL-------PD--LEILPSGDR----TEIGE---KGVNLSGGQKQR-- 135
Query: 336 TGEMLVGPARAL-------FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVI------S 382
V ARA+ D+ + +D+ I ++ +L I S
Sbjct: 136 -----VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMS 190
Query: 383 LLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQEVTSRK 442
L D +I++S G+I G + +L A+FL+ S
Sbjct: 191 YLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHH 233
Query: 443 DQEQ 446
Sbjct: 234 HHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 46/223 (20%), Positives = 85/223 (38%), Gaps = 61/223 (27%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L G++ + G L A++G G GK++L+ L K G + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDT--------RKM---FVEEVMELV 973
++ Y Q AW++ +D+ ++ + V++
Sbjct: 68 VA-YVPQQ----------------AWIQ------NDSLRENILFGCQLEEPYYRSVIQAC 104
Query: 974 ELNPIREAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
L P E L +G GV+ LS Q++R+++A + +N I D+P S +DA
Sbjct: 105 ALLPDLEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163
Query: 1027 AIVMRTV--RNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ V + +T + H + D +++M G
Sbjct: 164 KHIFENVIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 61/212 (28%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--VSGSITISGYPK------- 917
L+G++ PG +TAL+G +G+GK+T+ +L Y G + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NL---YQPTGGKVLLDGEPLVQYDHHY 90
Query: 918 --------NQET--FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVE 967
QE F R + E++ Y + E
Sbjct: 91 LHTQVAAVGQEPLLFGR---------------SFRENIAYGL-----TRTPTM------E 124
Query: 968 EVMELVELNPIREALVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1017
E+ + + + + G P G LS QR+ + +A L+ P ++ +D
Sbjct: 125 EITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNA 183
Query: 1018 TSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1048
TS LDA V R + + RTV+
Sbjct: 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 5e-08
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 36/207 (17%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP-KNQETF 922
E LKGVS R G + +++G SG+GK+T + + + G+I ++G
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDK 76
Query: 923 ARISGYCEQTDIHS---------------PHVTVYESLVYSAWLRLPPEVDSDTRKMFVE 967
++ + H+TV E+++ + P +V ++ E
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARE 131
Query: 968 EVMELVELNPIREALVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021
++ + VG+ LS Q++R++IA L P ++ DEPTS L
Sbjct: 132 RALKYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184
Query: 1022 DARAAAIVMRTVRNTVDTGRTVVCTIH 1048
D V+R ++ + G+T+V H
Sbjct: 185 DPELVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 44/205 (21%)
Query: 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA 923
LE LKG++ R G + ++G SG+GK+T + L + + G I I G +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAK--- 91
Query: 924 RISGYCEQTDIHS---------------PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEE 968
T+++ PH+TV ++ + P +V R+ +
Sbjct: 92 -------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAK 139
Query: 969 VMELVELNPIREALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023
MEL++ VGL LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 140 AMELLDK-------VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
Query: 1024 RAAAIVMRTVRNTVDTGRTVVCTIH 1048
V+ ++ + G T+V H
Sbjct: 193 EMVGEVLSVMKQLANEGMTMVVVTH 217
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 32/180 (17%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--VSGSITISGYPK 917
P + L+ ++ G AL+G SG+GK+T+ ++ T Y G I + G+
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDL 407
Query: 918 NQETFA---RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE 974
+ T A Q ++H + TV ++ Y+ E S E++ E
Sbjct: 408 REYTLASLRNQVALVSQ-NVHLFNDTVANNIAYAR-----TEEYSR------EQIEEAAR 455
Query: 975 LNPIREALVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
+ + + + GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 456 MAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 64/184 (34%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L +S G ++G +GAGKT ++++AG SG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD----SGRILLDG---------- 61
Query: 925 ISGYCEQTDIHS------------------PHVTVYESLVYSAWLRLPPEVDSDTRKMFV 966
D+ PH+ V ++L + +R+ +K+
Sbjct: 62 -------KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKD 104
Query: 967 EE-VMELVELNPIREALVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1020
+ V++ + + + LS +++R+ +A LV NP I+ +DEP S
Sbjct: 105 PKRVLDTARD-------LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSA 157
Query: 1021 LDAR 1024
LD R
Sbjct: 158 LDPR 161
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQ 919
+ +KG+ G + L+G +GAGKTT + +AG R G I +G
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ----KGKIIFNGQDITN 72
Query: 920 ETFARI--SGYCEQTDIHSP-------HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVM 970
+ I G P +TVYE+L+ A+ R K ++ +
Sbjct: 73 KPAHVINRMGIA-----LVPEGRRIFPELTVYENLMMGAYNR--------KDKEGIKRDL 119
Query: 971 ELV-ELNPI----REALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025
E + L P + L G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 120 EWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
Query: 1026 AAIVMRTVRNTVDTGRTV 1043
+ V ++ G T+
Sbjct: 175 VSEVFEVIQKINQEGTTI 192
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 3e-07
Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 67/197 (34%)
Query: 860 PDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYVSGSITI 912
D+ LK ++ + G A +G+SG GK+TL+ DV SG I I
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---------TSGQILI 400
Query: 913 SGYP----------KN-----QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEV 957
G+ Q+ S TV E+++ P
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLGR-----PTA 442
Query: 958 DSDTRKMFVEEVMELVELNPIREALVGLP----------GVSGLSTEQRKRLTIAVELVA 1007
+D EEV+E ++ + ++ LP GV LS Q++RL+IA +
Sbjct: 443 -TD------EEVVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLN 494
Query: 1008 NPSIIFMDEPTSGLDAR 1024
NP I+ +DE TS LD
Sbjct: 495 NPPILILDEATSALDLE 511
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 58/277 (20%), Positives = 102/277 (36%), Gaps = 96/277 (34%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK---DLKFSGRVTYNGHGMEEFV 225
+L D++ I+ +L + G +GKT+LL+ + G+L +K SGR+++
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF--------C 74
Query: 226 PQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
Q ++I T++E + F G Y+ R
Sbjct: 75 SQ--FSWI-MPG------TIKENIIF-------GVSYDE----YRYRS------------ 102
Query: 286 IMKAASLEGQEKNVVTDYVLKIL--GLEVCAD-TMVGDEMLRGI--SGGQRKRLTTGEML 340
++KA LE D + D ++G+ GI SGGQR R
Sbjct: 103 VIKACQLE-------ED--ISKFAEK-----DNIVLGE---GGITLSGGQRAR------- 138
Query: 341 VGPARAL-------FMDEISTGLDSSTTYQIVNS-----LRQSIHILNGTAVISLLQPAP 388
+ ARA+ +D LD T +I S + IL T+ + L+ A
Sbjct: 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV-TSKMEHLKKA- 196
Query: 389 ETYELFDDLILLSDGQIVYQGPRENVL----EFFERM 421
D +++L +G + G + +F ++
Sbjct: 197 ------DKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 59/221 (26%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
LK ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDT--------RKM---FVEEVMELV 973
IS +C Q +W+ T V++
Sbjct: 71 IS-FCSQF----------------SWIM------PGTIKENIIFGVSYDEYRYRSVIKAC 107
Query: 974 ELNPIREAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026
+L +G G++ LS QR R+++A + + + +D P LD
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 1027 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ + + +T + + ++ D++L++ G
Sbjct: 167 KEIFESCVCKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 54/270 (20%), Positives = 98/270 (36%), Gaps = 97/270 (35%)
Query: 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK---DLKFSGRVTYNGHGMEEFV 225
+L D++ I+ +L + G +GKT+LL+ + G+L +K SGR+++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF--------C 104
Query: 226 PQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYE-VLQELSRREKAANIKPD---- 280
Q +++I T++E + + + RY V+ KA ++ D
Sbjct: 105 SQ--NSWI-MP------GTIKENIIGVSYDE---YRYRSVI-------KACQLEEDISKF 145
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI--SGGQRKRLTTGE 338
+ D ++G+ GI SGGQR R
Sbjct: 146 AEKDN------------------------------IVLGE---GGITLSGGQRAR----- 167
Query: 339 MLVGPARAL-------FMDEISTGLDSSTTYQIVNS-----LRQSIHILNGTAVISLLQP 386
+ ARA+ +D LD T +I S + IL T+ + L+
Sbjct: 168 --ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV-TSKMEHLKK 224
Query: 387 APETYELFDDLILLSDGQIVYQGPRENVLE 416
A D +++L +G + G +
Sbjct: 225 A-------DKILILHEGSSYFYGTFSELQN 247
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 42/213 (19%), Positives = 81/213 (38%), Gaps = 44/213 (20%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
LK ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLR---LPPEVDSDTRKMFVEEVMELVELNPIREA 981
IS +C Q S + ++ + D V++ +L
Sbjct: 101 IS-FCSQ-----------NSWIMPGTIKENIIGVSYDEY----RYRSVIKACQLEEDISK 144
Query: 982 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1035 NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ +T + + ++ D++L++ G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 36/179 (20%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGY------PKN 918
L ++ + G AL+G SG+GK+TL+ +AG + T SG I PK+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT----SGKIYFDEKDVTELPPKD 74
Query: 919 QET---FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL 975
+ F + Y PH+TVY+++ + LR P + D + V EV +++ +
Sbjct: 75 RNVGLVFQNWALY--------PHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHI 123
Query: 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1032
+ + L P LS Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 124 DKL---LNRYP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 32/173 (18%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--VSGSITISGYPKNQETFA- 923
L VS + G AL+G SG+GK+T+ ++ T Y SGSI + G+
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 924 --RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA 981
R Q ++H + T+ ++ Y+A E E++ + E
Sbjct: 415 LRRHFALVSQ-NVHLFNDTIANNIAYAA----EGEYTR-------EQIEQAARQAHAMEF 462
Query: 982 LVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024
+ +P G S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 463 IENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 53/192 (27%), Positives = 76/192 (39%), Gaps = 45/192 (23%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--VSGSITISG-------- 914
LKGV+ G + ALMG +GAGK+TL +LAG Y G I + G
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSP 74
Query: 915 -------------YPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDT 961
YP E + G VT+ L + +L EV
Sbjct: 75 DERARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREVGVAE 117
Query: 962 RKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021
V++ +EL++ + + + G S ++KR I LV P+ +DE SGL
Sbjct: 118 FWTKVKKALELLDWDE---SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL 174
Query: 1022 DARAAAIVMRTV 1033
D A +V R V
Sbjct: 175 DIDALKVVARGV 186
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 991 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1045 CTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073
H ++ DA D ++ + V
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 32/162 (19%)
Query: 882 LMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY------PKNQE---TFARISGYCEQT 932
L+G SG GKTT + ++AG + G I PK++ F + +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVW---- 95
Query: 933 DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992
PH+TVYE++ + ++ P+ + D R V EL+++ + L P LS
Sbjct: 96 ----PHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRYPA--QLS 143
Query: 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1032
QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 48/178 (26%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISG-----YPKNQ 919
L VS G + ++G SGAGK+TL+ + R T GS+ + G +++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESE 99
Query: 920 ETFARISGYCEQTDI----------HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEV 969
T AR I S TV+ ++ P E+D+ + V
Sbjct: 100 LTKAR-------RQIGMIFQHFNLLSS--RTVFGNVAL------PLELDNTPKDEVKRRV 144
Query: 970 MELVELNPIREALVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022
EL+ L VGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 145 TELLSL-------VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 42/182 (23%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY------PKNQE 920
+ GVS + G AL+G SG GKTT + +LAG SG I PK
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKY-- 74
Query: 921 TFARISGYCEQTDI----HS----PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMEL 972
R ++ + PH+TV+E++ + R + + + R V E+
Sbjct: 75 ---R--------EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIARK 120
Query: 973 VELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVM 1030
+ ++ + L P LS Q++R+ +A LV P ++ DEP S LDA R M
Sbjct: 121 LLIDNL---LDRKPT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---M 172
Query: 1031 RT 1032
R
Sbjct: 173 RA 174
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 50/168 (29%), Positives = 68/168 (40%), Gaps = 38/168 (22%)
Query: 882 LMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISG-------------- 927
L+G SG GKTT + ++AG + G I I
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91
Query: 928 -YCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
Y PH+TVY+++ + LR P + D R V EV EL+ L + L P
Sbjct: 92 LY--------PHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTEL---LNRKP 137
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1032
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 138 R--ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 61/197 (30%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL----GKDLKFSGRVTYNGHGMEE 223
T + ++S +K +LLGP GKTT L +AG L + ++
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLV-ADPEKGI 74
Query: 224 FVP--QRTSAYISQN-DL--HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIK 278
FVP R A + Q+ L H MTV + +AF + + V
Sbjct: 75 FVPPKDRDIAMVFQSYALYPH---MTVYDNIAFPLKLRKV-------------------- 111
Query: 279 PDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML----RGISGGQRKRL 334
P +ID ++ + ++LGL E+L R +SGGQR+R+
Sbjct: 112 PRQEIDQRVREVA--------------ELLGLT---------ELLNRKPRELSGGQRQRV 148
Query: 335 TTGEMLVGPARALFMDE 351
G +V + MDE
Sbjct: 149 ALGRAIVRKPQVFLMDE 165
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--VSGSITISG-------- 914
L+G+S PG + A+MG +G+GK+TL LAGR+ Y G++ G
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSP 91
Query: 915 -------------YPKNQETFARISGYCEQTDIHSPHVTVYESL--VYSAWLRLPPEVDS 959
YP E I G V+ L +A +
Sbjct: 92 EDRAGEGIFMAFQYP--VE----IPG-----------VSNQFFLQTALNAVRSYRGQETL 134
Query: 960 DTRKM--FVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1017
D +EE + L+++ L+ G S ++KR I V P + +DE
Sbjct: 135 DRFDFQDLMEEKIALLKMPE---DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 191
Query: 1018 TSGLDARAAAIV 1029
SGLD A +V
Sbjct: 192 DSGLDIDALKVV 203
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 31/170 (18%)
Query: 162 SRKKPLTILHDVSGIIKPQR----------LTLLLGPPSSGKTTLLLALAGKLGKDLKFS 211
+ KP+ IL + P + L+ P +GK+ L L LA ++
Sbjct: 2 ATHKPINILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLL 61
Query: 212 GRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRR 271
+P Y+ E R +G + R+
Sbjct: 62 EV---------GELPTGPVIYLP------AEDPPTA---IHHRLHALGAHLSAEE---RQ 100
Query: 272 EKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321
A + P I + + E + +++ L+ + +E
Sbjct: 101 AVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEE 150
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFD 1056
RL +++ L S++ +DEPT LD ++ + + V+ H ++ D
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1057 AFDELLLM-KRGGE 1069
A D ++ + G
Sbjct: 128 AADHVIRISLENGS 141
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1436 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.91 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.91 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.89 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.89 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.88 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.86 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.84 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.84 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.83 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.83 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.83 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.8 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.8 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.79 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.78 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.78 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.78 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.74 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.74 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.73 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.73 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.73 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.72 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.72 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.72 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.71 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.71 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.7 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.7 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.69 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.69 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.69 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.68 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.67 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.67 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.65 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.65 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.64 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.64 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.63 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.61 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.61 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.6 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.6 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.6 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.59 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.59 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.58 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.57 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.57 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.56 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.55 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.53 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.51 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.51 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.5 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.5 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.5 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.5 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.49 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.49 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.49 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.48 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.47 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.47 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.47 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.47 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.46 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.45 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.45 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.44 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.44 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.43 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.43 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.43 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.43 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.43 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.4 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.39 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.38 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.35 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.35 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.34 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.33 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.32 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.31 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.31 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.3 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.28 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.28 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.26 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.26 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.25 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.25 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.25 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.23 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.23 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.23 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.22 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.21 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.21 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.19 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.19 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.18 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.17 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.16 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.15 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.15 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.12 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.12 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.12 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.12 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.12 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.1 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.1 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.09 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.09 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.08 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.06 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.06 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.05 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.05 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.03 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.02 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.02 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.01 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.01 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.0 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.0 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.98 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.94 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.92 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.92 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.92 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.92 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.91 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.91 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.91 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.91 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.9 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.88 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.86 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.84 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.82 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.81 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.8 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.77 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.77 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.76 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.75 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.73 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.69 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.69 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.68 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.66 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.66 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.64 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.62 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.62 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.61 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.59 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.58 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.52 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.49 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.49 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.47 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.46 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.44 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.44 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.44 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.4 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.4 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.39 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.37 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.37 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.35 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.35 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.34 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.33 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.32 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.28 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.27 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.27 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.26 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.26 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.23 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.17 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.16 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.13 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.07 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.06 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.03 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.03 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.02 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.96 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.95 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.95 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.91 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.88 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.85 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.82 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.79 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.76 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.74 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.74 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.72 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.7 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.66 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.64 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.63 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.63 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.63 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.58 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.57 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.57 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.52 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.51 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.5 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.49 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.48 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.46 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.45 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.43 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.39 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.39 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.38 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.36 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.34 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.32 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.31 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.3 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.27 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.26 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.24 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.21 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.2 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.2 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.2 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.17 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.17 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.15 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.15 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.14 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.12 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.12 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.04 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.04 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.02 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.97 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.93 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.92 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.9 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.89 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.88 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.87 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.84 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.84 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.82 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.81 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.8 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.8 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.79 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.73 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.68 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.68 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.64 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.63 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.63 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.59 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.59 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.56 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.52 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.51 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.48 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.46 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.44 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.42 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.38 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.34 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.31 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.3 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.3 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.26 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.25 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.25 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.17 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.17 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.16 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.14 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.12 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.11 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.08 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.08 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.08 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.06 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.02 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.02 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.94 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.93 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.92 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.89 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.89 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.88 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.88 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.86 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.84 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.83 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.82 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.78 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.75 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.72 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.67 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.67 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.67 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.65 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.65 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.65 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.63 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.62 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.57 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.56 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.49 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.47 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.41 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.41 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.39 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.37 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.33 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.3 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.27 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.26 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.26 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.25 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.19 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.14 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.13 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.07 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.03 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.02 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.01 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.97 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.95 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.91 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.9 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.88 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.86 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.82 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.75 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.62 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.6 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.57 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.57 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.5 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.48 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.42 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.41 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.38 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.36 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.35 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.33 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.25 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.24 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.24 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.24 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.19 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.17 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.15 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.12 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.1 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.1 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.09 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.07 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.04 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.03 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.01 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.0 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 93.9 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 93.9 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 93.88 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 93.85 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 93.83 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 93.81 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 93.8 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 93.8 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 93.79 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 93.76 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 93.7 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 93.68 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-74 Score=783.55 Aligned_cols=216 Identities=29% Similarity=0.390 Sum_probs=179.8
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
...++|+|++++|+.. ...++|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.
T Consensus 1074 ~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGS 1141 (1321)
T ss_dssp CCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTE
T ss_pred CCeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCE
Confidence 3469999999987421 23459999999999999999999999999999999999987 57999999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-------IREALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~ 985 (1436)
++.. ..+++.++||||++.++. -|++||+.|+. -|.+.+.+ .+.++++..++.+ -.|+.+|.
T Consensus 1142 di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A 1142 EIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD 1213 (1321)
T ss_dssp ETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT
T ss_pred EhhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccC---CCCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC
Confidence 8754 457788999999998886 59999997642 12233322 3566777766643 34666664
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
. +.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+++|+++ ....+|+|+||+
T Consensus 1214 ~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld 1289 (1321)
T 4f4c_A 1214 R-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS 1289 (1321)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES
T ss_pred C-CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEE
Confidence 3 46899999999999999999999999999999999999999999999865 4899999999987 467799999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 1290 ~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1290 N-GTIIEKGTH 1299 (1321)
T ss_dssp S-SSEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999985
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-68 Score=725.05 Aligned_cols=215 Identities=24% Similarity=0.363 Sum_probs=173.4
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++.. ....+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSC
T ss_pred CcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEE
Confidence 469999999887421 12358999999999999999999999999999999999987 579999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-------PIREALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-------~~~~~~~g~~ 986 (1436)
+.. ..+++.+|||+|++.++ +.||+||+.++... ...+.++ +.+.++..++. +-.|+.+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCCHHH----HHHHHHHhCcHHHHHhCccccccccCCC
Confidence 753 34567799999998776 57999999764211 1122222 34444444443 3345566643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+.+||||||||++|||||+++|+||+|||||||||+.+...+++.|++. .+|+|||+++|+++. + ..+|+|++|++
T Consensus 1169 -G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~ 1244 (1284)
T 3g5u_A 1169 -GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN 1244 (1284)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET
T ss_pred -CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999885 458999999999873 4 66999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 1245 -G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 -GKVKEHGTH 1253 (1284)
T ss_dssp -BEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999975
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=564.87 Aligned_cols=201 Identities=22% Similarity=0.276 Sum_probs=166.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ + ..|+++|+++++||++||+||||||||||+++|+|..+ +.+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE-----
Confidence 477788765542 1 25899999999999999999999999999999999887 56898875
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.+.+||++|+....+.+||.|++....... ....+.++++++.+++.+..+..+ ..|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 235899999987778899999886531100 011245788999999988777664 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEec-CcEEEEEcC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKR-GGEEIYVGP 1075 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-Gg~~~y~G~ 1075 (1436)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++ +.|.|||+++||+. .+...+|++++|++ .|+.+..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46899999999975 46778999999983 266778888
Q ss_pred CC
Q 046196 1076 LG 1077 (1436)
Q Consensus 1076 ~~ 1077 (1436)
+.
T Consensus 558 p~ 559 (607)
T 3bk7_A 558 PM 559 (607)
T ss_dssp CE
T ss_pred HH
Confidence 74
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-57 Score=561.38 Aligned_cols=201 Identities=23% Similarity=0.295 Sum_probs=165.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 477778765542 1 25889999999999999999999999999999999887 46898875
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
...+||++|+....+.+||.|++........ . ..+.++++++.+++.+..+.. +..|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDRE-----VNELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSB-----GGGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHH
Confidence 2358999999877788999998865311110 0 123467889999998766665 3579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEec-CcEEEEEcC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKR-GGEEIYVGP 1075 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-Gg~~~y~G~ 1075 (1436)
||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|.|||+++||++ .+...||++++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 99999999999999999999999999999999999999874 5999999999976 57778999999984 267778888
Q ss_pred CC
Q 046196 1076 LG 1077 (1436)
Q Consensus 1076 ~~ 1077 (1436)
+.
T Consensus 488 ~~ 489 (538)
T 1yqt_A 488 PM 489 (538)
T ss_dssp CE
T ss_pred HH
Confidence 74
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=561.22 Aligned_cols=184 Identities=21% Similarity=0.277 Sum_probs=148.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCC-CcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQND-LHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~-~~~~~lTV 245 (1436)
+.+|+|+|+++++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 459999999999999999999999999999999995 222 3333211 12468999874 67889999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-ccccccccCcccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTMVGDEMLR 324 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 324 (1436)
.|++.+ ...+ . ...++.+|+.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~----------~-----------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG----------T-----------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS----------C-----------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcC----------H-----------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999976 1110 0 01245678899995 55665554
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ .+.+++.++|+..++.++||+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-----~g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-----CGITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-----SCSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-----CCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 5999999999999999999999999999999999999999999987 24566668999999999999999999999
Q ss_pred EE-EecChhHHH
Q 046196 405 IV-YQGPRENVL 415 (1436)
Q Consensus 405 iv-~~G~~~~~~ 415 (1436)
++ +.|+++++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789987764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-55 Score=546.97 Aligned_cols=202 Identities=22% Similarity=0.248 Sum_probs=162.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESL 945 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l 945 (1436)
.|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|. .++|++|+....+..||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe---------eeEeechhcccccCCCHHHHH
Confidence 4777899999999999999999999999999999987 56899987653 478999987777789999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHH
Q 046196 946 VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1025 (1436)
Q Consensus 946 ~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~ 1025 (1436)
.+..... ... ....++++++.+++.+..+..+ ..|||||||||+|||+|+.+|+||+|||||+|||+.+
T Consensus 352 ~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASKDA----LST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 8642111 111 1234678899999988777664 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecC-cEEEEEcCCCcchhHHHHHhhhC
Q 046196 1026 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRG-GEEIYVGPLGRHCSQLIKYFEGI 1090 (1436)
Q Consensus 1026 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~G-g~~~y~G~~~~~~~~~~~yf~~~ 1090 (1436)
+..+++.|+++++ .|.|||+++||++ .+...||+|++|+.+ |.....|+.......+..|+..+
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 9999999999975 5899999999976 577789999999842 34445555432223445555543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-54 Score=551.55 Aligned_cols=214 Identities=22% Similarity=0.277 Sum_probs=136.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHH---------------------HHHhcCcCCCCC----cceEEEECCccC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLL---------------------LALAGKLGKDLK----FSGRVTYNGHGM 221 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~~G~~~ 221 (1436)
.++|+|||++|++||+++|+||||||||||+ +.+.|...|+.. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 788887777521 256777777655
Q ss_pred CCccccceEEEecCCCC-------------------cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCc
Q 046196 222 EEFVPQRTSAYISQNDL-------------------HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD 282 (1436)
Q Consensus 222 ~~~~~~~~~~yv~Q~~~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (1436)
... +++.++|++|... .++.+||+||+.+....... ......
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------- 171 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------- 171 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH-------
Confidence 332 2334556555432 24678999999874321100 000000
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHhCCccc-ccccccCcccccCChhhhhHHHHHHHHhcCCc--eeEEeCCCCCCChH
Q 046196 283 IDLIMKAASLEGQEKNVVTDYVLKILGLEVC-ADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR--ALFMDEISTGLDSS 359 (1436)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~~ 359 (1436)
.+.. . .+.... ..+++.+||++. .|..+ ..|||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 172 ~~~~-----~--~~~~~~-~~~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 172 ARLI-----L--REIRDR-LGFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp --------------CHHH-HHHHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred HHHH-----H--HHHHHH-HHHHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 0000 0 000111 135888999764 45554 4599999999999999999988 99999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe------cCCeEEEecChhHHH
Q 046196 360 TTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL------SDGQIVYQGPRENVL 415 (1436)
Q Consensus 360 t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL------~~G~iv~~G~~~~~~ 415 (1436)
++.++.+.|+++.. .+.+||.++|+... ...||+|++| ++|++++.|+++++.
T Consensus 239 ~~~~l~~~l~~l~~--~g~tvi~vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 239 DNDRLIATLKSMRD--LGNTLIVVEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GHHHHHHHHHHHHH--TTCEEEEECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCEEEEEeCCHHH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 99999999999864 35667778998875 4569999999 899999999988763
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-54 Score=538.57 Aligned_cols=189 Identities=20% Similarity=0.194 Sum_probs=155.3
Q ss_pred cccccceEEEeCC-----eEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCC
Q 046196 865 EFLKGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHV 939 (1436)
Q Consensus 865 ~iL~~vs~~i~~G-----e~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~l 939 (1436)
.+++|+|+++++| |++||+||||||||||+++|+|..+ +.+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------cc----CCcEEEecccccccCCc
Confidence 3688899999888 7899999999999999999999987 456752 11 23589999987766678
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs 1019 (1436)
||+|++... .+. ... ....++++++.+++.+..+.. +..|||||||||+|||+|+.+|+||+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQE-----VQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSB-----SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--ccc---cHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 211 111 123467899999999887776 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEecC-cEEEEEcCCCc
Q 046196 1020 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRG-GEEIYVGPLGR 1078 (1436)
Q Consensus 1020 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G-g~~~y~G~~~~ 1078 (1436)
|||+.++..+++.|+++. +.|.|||+++||++ .+...+||+++|+++ |+++..|++.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHH
Confidence 999999999999999986 45999999999976 577789999999852 78888898743
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-41 Score=432.34 Aligned_cols=196 Identities=26% Similarity=0.406 Sum_probs=146.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHH---------HhHcCCCC-CC---cee------EEEEECCccCCccc-----
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-GG---YVS------GSITISGYPKNQET----- 921 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl---------~~L~g~~~-~~---~~~------G~i~i~g~~~~~~~----- 921 (1436)
.|+|||++|++|++++|+|+||||||||+ +.+.+... .+ ..+ +.+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 34433221 00 122 34566655432100
Q ss_pred ---------------------------------------ccceEEEeecCCCCCC-------------------------
Q 046196 922 ---------------------------------------FARISGYCEQTDIHSP------------------------- 937 (1436)
Q Consensus 922 ---------------------------------------~~~~~gyv~q~~~~~~------------------------- 937 (1436)
..+..|++.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012367776655544
Q ss_pred -------CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 046196 938 -------HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANP- 1009 (1436)
Q Consensus 938 -------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p- 1009 (1436)
.+||.|++.|... . .....+.++++.+||.... .+.+ +..|||||||||.|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3678888876431 1 1223467889999996532 2222 4689999999999999999876
Q ss_pred --CcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 046196 1010 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-----RGGEEIYVGPL 1076 (1436)
Q Consensus 1010 --~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~y~G~~ 1076 (1436)
+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. +||++++.|++
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999888999999999964 567799999993 47999999985
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=394.16 Aligned_cols=219 Identities=24% Similarity=0.313 Sum_probs=190.3
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.+... .....+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 23 ~mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~ 91 (366)
T 3tui_C 23 HMIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQE 91 (366)
T ss_dssp CCEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred ceEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 358999998877421 123569999999999999999999999999999999999987 579999999998
Q ss_pred CCcc------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 917 KNQE------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 917 ~~~~------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
+... ..++.+||++|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..+.. +.+
T Consensus 92 i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~ 163 (366)
T 3tui_C 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSN 163 (366)
T ss_dssp CSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCC-----TTT
T ss_pred CCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhh
Confidence 7432 23567999999999999999999999987654 234566677899999999999887765 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ .+...||+|++|++ |+
T Consensus 164 LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~ 241 (366)
T 3tui_C 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GE 241 (366)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999754 999999999976 57788999999996 79
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 242 iv~~g~~ 248 (366)
T 3tui_C 242 LIEQDTV 248 (366)
T ss_dssp EEECCBH
T ss_pred EEEEcCH
Confidence 9999975
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=388.80 Aligned_cols=207 Identities=21% Similarity=0.307 Sum_probs=180.7
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc------cceEEEecCCCCc
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP------QRTSAYISQNDLH 239 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~~~~ 239 (1436)
..++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 356999999999999999999999999999999999999998 9999999999876543 3569999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.|+.+..+... .+...+++.+|+.+||++.++..+
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~- 161 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP- 161 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCT-
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCCh-
Confidence 999999999999876543210 112234677899999998777555
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
..|||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.+.. +.+|+.++|+..++.++||+|++
T Consensus 162 ----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 162 ----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp ----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999986543 56677789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 046196 400 LSDGQIVYQGPRENVL 415 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~ 415 (1436)
|++|+++++|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999885
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=371.43 Aligned_cols=219 Identities=23% Similarity=0.347 Sum_probs=183.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 5788888776421 112469999999999999999999999999999999999987 57999999998864
Q ss_pred ccc-------ccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCC
Q 046196 919 QET-------FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR-EALVGLPGVSG 990 (1436)
Q Consensus 919 ~~~-------~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~-~~~~g~~~~~~ 990 (1436)
... .++.+||++|++.+++.+||+||+.+....+.......++..+.+.++++.+++.+.. +.. +..
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 321 1245999999999999999999999876554222334556667788999999997643 544 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ....+|++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4588999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 223 i~~~~~~ 229 (235)
T 3tif_A 223 VEREEKL 229 (235)
T ss_dssp EEEEEEC
T ss_pred EEEEcCh
Confidence 9888875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=387.19 Aligned_cols=207 Identities=22% Similarity=0.372 Sum_probs=178.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC----CCccc-cceEEEecCCCCcCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM----EEFVP-QRTSAYISQNDLHIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~----~~~~~-~~~~~yv~Q~~~~~~ 241 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..+++
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999998 99999999987 22222 367999999999999
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
.+||+||+.|+.+..+... .+...+++.+++.+||++..|..+
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~--- 136 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYP--- 136 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCG---
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCCh---
Confidence 9999999999865433211 011234567899999998877555
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.++++.+. .+++++.++|+..++..+||+|++|+
T Consensus 137 --~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 137 --HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-NGKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 469999999999999999999999999999999999999999988887654 35667779999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|+++..|+++++.+
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998854
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=388.67 Aligned_cols=207 Identities=24% Similarity=0.364 Sum_probs=181.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-ceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+. +.+|||+|+..+++.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999998 99999999998765543 679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+... .+...+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 999999876543210 112234677899999998776554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986544 55666689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999999854
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=418.85 Aligned_cols=195 Identities=28% Similarity=0.381 Sum_probs=148.4
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHc-CC---------CCCC---ceeE------EEEECCccCCccc-----
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GR---------KTGG---YVSG------SITISGYPKNQET----- 921 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~-g~---------~~~~---~~~G------~i~i~g~~~~~~~----- 921 (1436)
.|+|||++|++||++||+|+||||||||+++|. |. ..++ ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999863 21 0112 2234 5889988763110
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 046196 922 -----------------FARISGYCEQTDIHS----------------------P------------------------- 937 (1436)
Q Consensus 922 -----------------~~~~~gyv~q~~~~~----------------------~------------------------- 937 (1436)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357776642221 1
Q ss_pred -------CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046196 938 -------HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQRKRLTIAVELVANP 1009 (1436)
Q Consensus 938 -------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p 1009 (1436)
.+||.|++.|... . .. ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 4678888876321 1 11 223578899999986 44444 3579999999999999999865
Q ss_pred ---CcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 046196 1010 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-----RGGEEIYVGPL 1076 (1436)
Q Consensus 1010 ---~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~~~y~G~~ 1076 (1436)
+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999965 457899999995 46899998875
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=379.27 Aligned_cols=215 Identities=25% Similarity=0.385 Sum_probs=185.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ ++..+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 588999988763 12349999999999999999999999999999999999987 5799999999987
Q ss_pred C--c---ccccceEEEeecCCC-CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 918 N--Q---ETFARISGYCEQTDI-HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 918 ~--~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
. . ..+++.+||++|++. .+..+||+||+.|..... ..+.++..++++++++.++|.+..+..+ ..|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 1 124567999999863 445799999999987543 2345566677999999999998887764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ ++|+|||++||+++ .+...+|++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999987 46778999999996 799
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
++.|+.
T Consensus 223 ~~~g~~ 228 (275)
T 3gfo_A 223 ILQGNP 228 (275)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999985
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=391.33 Aligned_cols=214 Identities=26% Similarity=0.392 Sum_probs=189.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. +..+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 377888887762 3569999999999999999999999999999999999987 5799999999987
Q ss_pred Ccc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
... ..++.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+.. +.+||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHH
Confidence 532 23467999999999999999999999987664 245566677899999999999888776 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||||||+..+..+++.|+++.++ |.|||++|||++ ++..++|+|++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999765 999999999976 68889999999996 79999997
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 218 ~ 218 (381)
T 3rlf_A 218 P 218 (381)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=368.12 Aligned_cols=213 Identities=23% Similarity=0.311 Sum_probs=182.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 378888887662 2459999999999999999999999999999999999987 5699999999886
Q ss_pred Ccc------ccc-ceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 918 NQE------TFA-RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 918 ~~~------~~~-~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
... .++ +.+||++|++.+++.+||+||+.+....+ ....++..+.++++++.+++.+..+..+ ..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YE 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 431 122 56999999999999999999999876543 1233444567899999999988877653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ....+|++++|++ |++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~~-G~i 217 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMKD-GKV 217 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEET-TEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999877999999999965 3488999999986 789
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
++.|+.
T Consensus 218 ~~~g~~ 223 (224)
T 2pcj_A 218 VGEITR 223 (224)
T ss_dssp EEEEEC
T ss_pred EEEeee
Confidence 988863
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=374.57 Aligned_cols=214 Identities=27% Similarity=0.375 Sum_probs=183.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 388999988762 2459999999999999999999999999999999999987 5699999999876
Q ss_pred C--c---ccccceEEEeecCCCCCCCCcHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 918 N--Q---ETFARISGYCEQTDIHSPHVTVYESLVYSA-WLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 918 ~--~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
. . ..+++.+||++|++.+++.+||+||+.+.. ... ..+.++..+.++++++.++|.+..+.. +..|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhC
Confidence 3 1 123456999999999999999999999864 322 223344456789999999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 46678999999996 7899
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
+.|+.
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88874
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=390.30 Aligned_cols=214 Identities=25% Similarity=0.415 Sum_probs=185.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478888887762 3569999999999999999999999999999999999987 5799999999876
Q ss_pred ----Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 918 ----NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 918 ----~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
.. ...++.+|||+|+..++|++||+||+.|+...+ ....++.+++++++++.++|.+..+..+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 22 234567999999999999999999999875443 2234556677899999999998888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
|||||||+|||||+.+|++|+|||||||||+..+..+++.|+++. +.|.|||++|||.+ ++..++|+|++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999888765 56999999999976 67889999999996 7999
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
..|++
T Consensus 219 ~~g~~ 223 (359)
T 3fvq_A 219 QTASP 223 (359)
T ss_dssp EEECH
T ss_pred EEeCH
Confidence 99985
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=374.86 Aligned_cols=214 Identities=22% Similarity=0.293 Sum_probs=183.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 478899887762 2459999999999999999999999999999999999987 5699999999886
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCcHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCccc-c
Q 046196 918 NQ----------------ETFARISGYCEQTDIHSPHVTVYESLVYSA-WLRLPPEVDSDTRKMFVEEVMELVELNPI-R 979 (1436)
Q Consensus 918 ~~----------------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~ 979 (1436)
.. ...++.+||++|++.+++.+||+||+.+.. ..+ ..+.++.++.++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123456999999999999999999999864 322 22334445678999999999887 7
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhC
Q 046196 980 EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1059 (1436)
Q Consensus 980 ~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1059 (1436)
+.. +..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|
T Consensus 148 ~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKY-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSC-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 765 3579999999999999999999999999999999999999999999999877999999999975 4667899
Q ss_pred eEEEEecCcEEEEEcCC
Q 046196 1060 ELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1060 ~v~~l~~Gg~~~y~G~~ 1076 (1436)
++++|++ |+++..|+.
T Consensus 222 ~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 222 HVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEEET-TEEEEEECH
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999996 789988874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-40 Score=370.78 Aligned_cols=214 Identities=26% Similarity=0.354 Sum_probs=184.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 488999987762 2459999999999999999999999999999999999987 5699999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046196 918 NQ--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq 995 (1436)
.. ...++.+||++|++.+++.+||+||+.+...... ...++..+.++++++.++|.+..++.+ ..|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 43 2345679999999999999999999998764431 233344456889999999998877763 5799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999975 45667999999996 78888887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=379.22 Aligned_cols=208 Identities=23% Similarity=0.372 Sum_probs=167.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++.++ ..
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-ND 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SE
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccC-cc
Confidence 45999999999999999999999999999999999999998 9999999999877643 35799999998876 56
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+|||.|+..... .+.+.+++...+.. ..+ -.+++..+|.+|+.+
T Consensus 143 Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~~l~------~~i--~~lp~gl~t~~~~~g- 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG-------------------------NDEVEAAAQAAGIH------DAI--MAFPEGYRTQVGERG- 188 (306)
T ss_dssp EHHHHHHTTSTTCC-------------------------HHHHHHHHHHHTCH------HHH--HHSTTGGGCEESTTS-
T ss_pred cHHHHHHhhcccCC-------------------------HHHHHHHHHHhCcH------HHH--HhccchhhhHhcCCc-
Confidence 99999999743210 01111111111110 111 135667789998654
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+|||||||||+|||||+.+|+||||||||||||+.+...|.+.|+++.. + .++|+++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~-~Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--N-RTTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--T-SEEEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--C-CEEEEEEcChHHHHc-CCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998743 3 455557888777655 9999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+|+++|+++++++
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=372.95 Aligned_cols=217 Identities=23% Similarity=0.277 Sum_probs=183.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 488999987762 2459999999999999999999999999999999999987 5699999999886
Q ss_pred Ccc----cccceEEEeecCCCCCCCCcHHHHHHHHHHh-cCCC---------CCCHHHHHHHHHHHHHHcCCcccccccc
Q 046196 918 NQE----TFARISGYCEQTDIHSPHVTVYESLVYSAWL-RLPP---------EVDSDTRKMFVEEVMELVELNPIREALV 983 (1436)
Q Consensus 918 ~~~----~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l-~~~~---------~~~~~~~~~~v~~vl~~l~l~~~~~~~~ 983 (1436)
... ..++.+||++|++.+++.+||+||+.+.... .... ....++.++.++++++.+++.+..+..+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 1345699999999899999999999886532 1010 0122334566889999999988777764
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEE
Q 046196 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL 1063 (1436)
Q Consensus 984 g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1063 (1436)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 579999999999999999999999999999999999999999999999877999999999987 46778999999
Q ss_pred EecCcEEEEEcCC
Q 046196 1064 MKRGGEEIYVGPL 1076 (1436)
Q Consensus 1064 l~~Gg~~~y~G~~ 1076 (1436)
|++ |++++.|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 226 MFN-GQIIAEGRG 237 (257)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEeCH
Confidence 996 789988875
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=382.36 Aligned_cols=215 Identities=25% Similarity=0.395 Sum_probs=187.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ +++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 588889887651 23458999999999999999999999999999999999987 5799999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.. ...++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+... .+||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 234567999999999999999999999987654 2344555677899999999998887763 57999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998755 999999999975 57788999999996 79999887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=373.53 Aligned_cols=207 Identities=24% Similarity=0.327 Sum_probs=175.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc-----cccceEEEecCCC-CcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF-----VPQRTSAYISQND-LHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~~-~~~ 240 (1436)
..+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+|||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999998 99999999987421 1235799999986 345
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+||+.|+....+... .+...+++.+++.+||++..+..+
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~-- 141 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPT-- 141 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBG--
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCc--
Confidence 68999999999865432110 011234567899999988777655
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+.. +++|+.++|+..++.++||+|++|
T Consensus 142 ---~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 142 ---HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp ---GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEE
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999986333 556667899999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 046196 401 SDGQIVYQGPRENVLE 416 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~~ 416 (1436)
++|+++++|+++++.+
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=379.41 Aligned_cols=207 Identities=25% Similarity=0.368 Sum_probs=179.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999866544 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+...+++.+++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------K------------------------DEVEKRVVEIARKLLIDNLLDRKP-----TQ 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------H------------------------HHTTHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 99999986543210 0 011234667899999988777554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-GITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45566689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=366.70 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=177.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 45999999999999999999999999999999999999998 9999999999876543 25699999999888899
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++...... .+....++.+++.+||.+..+..+
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 139 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDY----- 139 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBG-----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----
Confidence 999999997543210 001124566899999988777655
Q ss_pred ccCChhhhhHHHHHHHHhc------CCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 324 RGISGGQRKRLTTGEMLVG------PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~------~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
..|||||||||+|||||+. +|++|||||||+|||+.++.++.+.|+++.+. ++.+|+.++|+..++..+||+|
T Consensus 140 ~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 4699999999999999999 99999999999999999999999999998653 4667777999999999999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|+++++|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999999874
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=412.85 Aligned_cols=195 Identities=26% Similarity=0.367 Sum_probs=144.8
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHh-HcCCC-------CC----------------CceeE-------EEEECC
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDV-LAGRK-------TG----------------GYVSG-------SITISG 914 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~-L~g~~-------~~----------------~~~~G-------~i~i~g 914 (1436)
.|+|||++|++||++||+|+||||||||++. |+|.. .+ .+.+| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 66431 11 12467 789999
Q ss_pred ccCCcccc----------------------cceEEEeec----------------------CCCCCC-------------
Q 046196 915 YPKNQETF----------------------ARISGYCEQ----------------------TDIHSP------------- 937 (1436)
Q Consensus 915 ~~~~~~~~----------------------~~~~gyv~q----------------------~~~~~~------------- 937 (1436)
.++..... .+..||.++ +..+.+
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 87632110 011122211 111111
Q ss_pred -------------------CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHH
Q 046196 938 -------------------HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-REALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 938 -------------------~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~LSgGqrq 997 (1436)
.+|+.|++.|.. .. ...+.+.++++.++|... .+.. +..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~---~~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE---SAIFRALDTLREVGLGYLRLGQP-----ATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS---HHHHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc---hHHHHHHHHHHHcCCCcccccCC-----cccCCHHHHH
Confidence 245666554421 11 122357899999999763 2433 4579999999
Q ss_pred HHHHHHHHhhC---CCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe-----cCcE
Q 046196 998 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK-----RGGE 1069 (1436)
Q Consensus 998 Rl~iA~aL~~~---p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~Gg~ 1069 (1436)
||.||++|+.+ |+||+|||||+|||+.+...+++.|++++++|.|||+++|+++ ....+|+|++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCCE
Confidence 99999999996 7999999999999999999999999999888999999999965 348899999995 4689
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
+++.|+.
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=364.50 Aligned_cols=206 Identities=20% Similarity=0.333 Sum_probs=174.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--Ccc---ccceEEEecCCCCcCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME--EFV---PQRTSAYISQNDLHIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~~~~~~ 241 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 35999999999999999999999999999999999999998 999999998874 111 1346999999998899
Q ss_pred CCCHHHHHHhhh-hhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 242 EMTVRETLAFSA-RCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 242 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
.+||+||+.|+. +..+.. + .+....++.+++.+||++..+..+
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~-- 157 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------R------------------------EKAEAKAMELLDKVGLKDKAHAYP-- 157 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCG--
T ss_pred CCCHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchHhcCCh--
Confidence 999999999864 322110 0 001124567899999988777555
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..++.++||+|++|
T Consensus 158 ---~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 158 ---DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ---GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998653 566777899999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 046196 401 SDGQIVYQGPRENVLE 416 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~~ 416 (1436)
++|++++.|+++++.+
T Consensus 233 ~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 233 DGGYIIEEGKPEDLFD 248 (263)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=383.05 Aligned_cols=213 Identities=27% Similarity=0.387 Sum_probs=185.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+ +++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKF-------------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEES-------------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6788887665 23469999999999999999999999999999999999987 57999999998864
Q ss_pred cc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 QE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.. ..++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+... .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999986554 2334555677899999999998887763 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998754 999999999975 57789999999996 789998875
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=379.76 Aligned_cols=207 Identities=26% Similarity=0.407 Sum_probs=179.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999998866544 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+...+++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAP----------R------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQ 133 (362)
T ss_dssp HHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hh
Confidence 99999986543211 0 011234567899999988776554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45566689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 213 ~~~g~~~~~~~ 223 (362)
T 2it1_A 213 LQVGTPDEVYY 223 (362)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=379.93 Aligned_cols=207 Identities=27% Similarity=0.392 Sum_probs=179.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999998865443 4679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+...+++++++.+||++..|..+ ..
T Consensus 105 ~eni~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~ 145 (355)
T 1z47_A 105 YDNVSFGLREKRVP----------K------------------------DEMDARVRELLRFMRLESYANRFP-----HE 145 (355)
T ss_dssp HHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcCCc-----cc
Confidence 99999986543211 0 011234667899999998777554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-GVTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45666689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 225 ~~~g~~~~l~~ 235 (355)
T 1z47_A 225 EQFGTPEEVYE 235 (355)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=383.37 Aligned_cols=213 Identities=26% Similarity=0.376 Sum_probs=184.2
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67888877652 3469999999999999999999999999999999999987 57999999998874
Q ss_pred cc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 QE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.. ..++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+... .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999875432 2223344567899999999998887764 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999975 57789999999996 789999875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=370.96 Aligned_cols=212 Identities=22% Similarity=0.317 Sum_probs=183.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 588999988763 3569999999999999999999999999999999999987 5699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE 994 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG 994 (1436)
.. ...++.++|++|+..+++.+||+||+.+..... ...+.++.++++++.+++.+..+..+ ..||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 53 234567899999998888999999999875432 12233456889999999998887764 579999
Q ss_pred HHHHHHHHHHHhh------CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 995 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 995 qrqRl~iA~aL~~------~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
|||||+|||||+. +|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+...+|++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999976 46778999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 224 G~i~~~g~~ 232 (266)
T 4g1u_C 224 GKLVACGTP 232 (266)
T ss_dssp TEEEEEECH
T ss_pred CEEEEEcCH
Confidence 799999986
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=359.97 Aligned_cols=207 Identities=21% Similarity=0.239 Sum_probs=170.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-------ceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-------RTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~~~~ 239 (1436)
.++|+|||+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++...... +.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999998 99999999988765432 359999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccc-cccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCA-DTMV 318 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 318 (1436)
++.+||+||+.++......... .. .+....+..+++.+||.+.. +..
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SG------------------------EERRKRALECLKMAELEERFANHK- 142 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CH------------------------HHHHHHHHHHHHHTTCCGGGTTCC-
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CH------------------------HHHHHHHHHHHHHCCCChhhhhCC-
Confidence 9999999999997643211000 00 01122355678999998643 544
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++|+.++|+.. ..++||+|+
T Consensus 143 ----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 143 ----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDIN-VARFGERII 216 (235)
T ss_dssp ----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHH-HHTTSSEEE
T ss_pred ----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEcCCHH-HHHhCCEEE
Confidence 45699999999999999999999999999999999999999999999986533 455666788876 568999999
Q ss_pred EecCCeEEEecChhHH
Q 046196 399 LLSDGQIVYQGPRENV 414 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~ 414 (1436)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999988765
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=358.03 Aligned_cols=200 Identities=25% Similarity=0.320 Sum_probs=169.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~ 239 (1436)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 45999999999999999999999999999999999999998 9999999998865432 1469999999998
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.++....+.. + .+....++.+++.+||++..+..+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------K------------------------KEAKERGEYLLSELGLGDKLSRKP- 138 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTCCG-
T ss_pred CCCCCHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 99999999999875432210 0 001123566899999988777655
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+...+ ++||+|++
T Consensus 139 ----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 139 ----YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG--GTSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp ----GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH-TTSSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHH-HhCCEEEE
Confidence 469999999999999999999999999999999999999999999998653 55666678887766 89999999
Q ss_pred ecCCeEEEecCh
Q 046196 400 LSDGQIVYQGPR 411 (1436)
Q Consensus 400 L~~G~iv~~G~~ 411 (1436)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=383.73 Aligned_cols=213 Identities=26% Similarity=0.366 Sum_probs=185.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. ++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 67888877652 3469999999999999999999999999999999999987 57999999998753
Q ss_pred c-------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 919 Q-------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 919 ~-------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
. ...++.+|||+|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+..+ .+|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 123467999999999999999999999987654 2344555677899999999998887763 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998754 999999999975 57789999999996 799
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
+..|+.
T Consensus 219 ~~~g~~ 224 (372)
T 1g29_1 219 QQVGSP 224 (372)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 999975
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=365.16 Aligned_cols=213 Identities=22% Similarity=0.323 Sum_probs=179.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 478899887762 2459999999999999999999999999999999999987 5699999999887
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCC
Q 046196 918 NQE---T-FARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVE-LNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 918 ~~~---~-~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~-l~~~~~~~~g~~~~~~LS 992 (1436)
... . .++.+||++|++.+++.+||+||+.+..... ...++..+.++++++.++ +.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCC
Confidence 432 1 2345999999999999999999998864211 112333456788999994 87766655 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIY 1072 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y 1072 (1436)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 56788999999996 78888
Q ss_pred EcCC
Q 046196 1073 VGPL 1076 (1436)
Q Consensus 1073 ~G~~ 1076 (1436)
.|+.
T Consensus 220 ~g~~ 223 (240)
T 1ji0_A 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 8864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=365.76 Aligned_cols=206 Identities=19% Similarity=0.256 Sum_probs=174.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC----------cc------ccceE
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE----------FV------PQRTS 230 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------~~------~~~~~ 230 (1436)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 35999999999999999999999999999999999999998 9999999988751 11 13569
Q ss_pred EEecCCCCcCCCCCHHHHHHhhh-hhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhC
Q 046196 231 AYISQNDLHIGEMTVRETLAFSA-RCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILG 309 (1436)
Q Consensus 231 ~yv~Q~~~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 309 (1436)
+||+|++.+++.+||+||+.|+. +..+.. + .+....++.+++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcC
Confidence 99999999999999999999864 222110 0 001124567899999
Q ss_pred Cccc-ccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 046196 310 LEVC-ADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP 388 (1436)
Q Consensus 310 L~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 388 (1436)
|++. .+..+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..
T Consensus 142 L~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHH
T ss_pred CCchhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 9887 77555 469999999999999999999999999999999999999999999998653 556666899999
Q ss_pred hHHHhcccEEEecCCeEEEecChhHHHH
Q 046196 389 ETYELFDDLILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 389 ~~~~~~D~iivL~~G~iv~~G~~~~~~~ 416 (1436)
++..+||+|++|++|++++.|+++++.+
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999988753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=379.31 Aligned_cols=207 Identities=27% Similarity=0.390 Sum_probs=178.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC------ccc-cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE------FVP-QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~~~-~~~~~yv~Q~~~~ 239 (1436)
.++|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..+ ++.+|||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 45999999999999999999999999999999999999998 9999999988754 332 4679999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.|+.+..+.. + .+...+++.+++.+||++..+..+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~- 137 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVP----------R------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred CCCCCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchHhcCCc-
Confidence 99999999999986543211 0 011234567899999988777554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++
T Consensus 138 ----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhCCEEEE
Confidence 5699999999999999999999999999999999999999999999986543 45566689999999999999999
Q ss_pred ecCCeEEEecChhHHHH
Q 046196 400 LSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~~ 416 (1436)
|++|+++..|+++++.+
T Consensus 213 l~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999998853
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=379.26 Aligned_cols=207 Identities=24% Similarity=0.352 Sum_probs=172.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999998866544 3679999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+..+.. + .+...+++.+++.+||++..+..+ ..
T Consensus 101 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFP----------K------------------------DEIDKRVRWAAELLQIEELLNRYP-----AQ 141 (372)
T ss_dssp HHHHHTTCC--CCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 99999986433211 0 011234567899999998777554 56
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45566689999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+..|+++++.+
T Consensus 221 ~~~g~~~~l~~ 231 (372)
T 1v43_A 221 LQIGSPTEVYL 231 (372)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=383.10 Aligned_cols=213 Identities=26% Similarity=0.394 Sum_probs=185.2
Q ss_pred eEEecccceeecchhhhccCCCCcccc--ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLE--FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
++++|+++.+. ++. +|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67888877652 245 8999999999999999999999999999999999987 579999999987
Q ss_pred CCc------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 917 KNQ------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 917 ~~~------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
+.. ...++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+..+ .+
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 632 234577999999999999999999999876433 2344555677899999999998887764 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 999999999975 57788999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 219 i~~~g~~ 225 (353)
T 1oxx_K 219 LVQVGKP 225 (353)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9998875
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=363.82 Aligned_cols=216 Identities=26% Similarity=0.352 Sum_probs=173.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
.++|+|||+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 35999999999999999999999999999999999999998 9999999998865432 2469999999988999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.++......+ ..... ........ ..+....++.+++.+||++..++.+
T Consensus 97 ~tv~enl~~~~~~~~~~----~~~~~----~~~~~~~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 151 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES----PLNSL----FYKKWIPK-------------EEEMVEKAFKILEFLKLSHLYDRKA---- 151 (257)
T ss_dssp SBHHHHHHGGGTSTTSC----HHHHH----HHCSSCCC-------------CHHHHHHHHHHHHHTTCGGGTTSBG----
T ss_pred CcHHHHHHHHHhhhccC----ccccc----ccccccCC-------------HHHHHHHHHHHHHHcCCchhhCCCc----
Confidence 99999999875320000 00000 00000000 0011224567899999988777655
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++..+||+|++|++
T Consensus 152 -~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 152 -GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 45999999999999999999999999999999999999999999999865 2 56666689999999999999999999
Q ss_pred CeEEEecChhH
Q 046196 403 GQIVYQGPREN 413 (1436)
Q Consensus 403 G~iv~~G~~~~ 413 (1436)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999988
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=361.02 Aligned_cols=206 Identities=25% Similarity=0.290 Sum_probs=175.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lT 244 (1436)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999875421 1356999999998899999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.|+.+..+.. . .+....++.+++.+||++..++.+ .
T Consensus 105 v~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~ 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIKDRV-----S 145 (256)
T ss_dssp HHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGGSBG-----G
T ss_pred HHHHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHCCCchHhcCCh-----h
Confidence 999999875432210 0 001123566889999998777655 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. .+++|+.++|+..++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh--CCCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 35666778899988889999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=382.84 Aligned_cols=214 Identities=22% Similarity=0.363 Sum_probs=179.8
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. ++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 378899887762 2459999999999999999999999999999999999987 5799999999886
Q ss_pred Ccc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
... ..++.+||++|+..++|++||+||+.|....+ ..+.++.+++++++++.++|.+..+.. +.+||||||
T Consensus 76 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~ 147 (372)
T 1v43_A 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQR 147 (372)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHH
Confidence 432 23467999999999999999999999865332 234455567789999999999888776 457999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||||||+.++..+++.|+++.++ |.|||++||+++ ++..++|++++|++ |+++..|+
T Consensus 148 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 225 (372)
T 1v43_A 148 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 225 (372)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999998765 999999999975 57789999999996 78999887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 226 ~ 226 (372)
T 1v43_A 226 P 226 (372)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=377.52 Aligned_cols=205 Identities=21% Similarity=0.305 Sum_probs=177.2
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC-----cc-ccceEEEecCCCCcCCC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE-----FV-PQRTSAYISQNDLHIGE 242 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~-~~~~~~yv~Q~~~~~~~ 242 (1436)
+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+|||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 899999999999999999999999999999999999998 9999999988754 22 24679999999999999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
+||+||+.|+.+..+.. + .+...+++.+++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMS----------K------------------------EEIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCCh----
Confidence 99999999986543211 0 011234567899999998877554
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
..|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5699999999999999999999999999999999999999999999986543 45566689999999999999999999
Q ss_pred CeEEEecChhHHHH
Q 046196 403 GQIVYQGPRENVLE 416 (1436)
Q Consensus 403 G~iv~~G~~~~~~~ 416 (1436)
|+++..|+++++.+
T Consensus 217 G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 217 GKLVQVGKPEDLYD 230 (353)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998853
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=376.77 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=176.2
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999998 9999999998865433 367999999999999999999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+.|+.+..+... . .+++.+++.+||++..|..+ ..||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999864322100 0 23566899999998877554 5699
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
|||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986543 5566668999999999999999999999999
Q ss_pred ecChhHHH
Q 046196 408 QGPRENVL 415 (1436)
Q Consensus 408 ~G~~~~~~ 415 (1436)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999884
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=357.11 Aligned_cols=204 Identities=22% Similarity=0.346 Sum_probs=171.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~ 242 (1436)
.++|+|||+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 35999999999999999999999999999999999999998 9999999998865432 2359999999998999
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhC-CcccccccccCc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILG-LEVCADTMVGDE 321 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 321 (1436)
+||+||+.++.... ... . +....++.+++.++ |++..+..+
T Consensus 96 ltv~enl~~~~~~~-~~~--------------------~--------------~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KDK--------------------E--------------GIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-CCS--------------------S--------------HHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-CCH--------------------H--------------HHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863211 000 0 01123455678884 877666544
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .+++|+.++|+..++.++||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999864 35556668899889999999999999
Q ss_pred CCeEEEecChhHHH
Q 046196 402 DGQIVYQGPRENVL 415 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~ 415 (1436)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988774
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=376.62 Aligned_cols=209 Identities=22% Similarity=0.297 Sum_probs=180.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+ +++ +|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y-------------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKW-------------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEEC-------------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 4677777654 234 8999999999999999999999999999999999987 57999999998874
Q ss_pred c-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 Q-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
. ...++.+||++|+..++|++||+||+.|....+.. +.+ ++++++++.++|.+..+... .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998655421 111 56889999999998888764 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||||+.+|++|+|||||||||+.++..+++.|+++.+ .|.|||++||+++ ++..++|++++|++ |+++..|+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999975 57789999999986 788888875
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=364.25 Aligned_cols=217 Identities=23% Similarity=0.339 Sum_probs=179.3
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+... ....+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRG--------TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTT--------STTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 6788888766300 0001459999999999999999999999999999999999987 56999999998875
Q ss_pred cccccceEEEeecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCCCCHHH
Q 046196 919 QETFARISGYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN--PIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 919 ~~~~~~~~gyv~q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~--~~~~~~~g~~~~~~LSgGq 995 (1436)
...+++.+||++|++ ..++.+||+||+.+...... ..++..++++++++.++|. +..+..+ ..|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 433456799999985 56678999999998643221 1122234578999999998 7777653 5799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999777999999999987 46668999999996 78888886
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=357.51 Aligned_cols=208 Identities=23% Similarity=0.327 Sum_probs=176.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. + +|+|||+++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46777776652 1 49999999999 9999999999999999999999987 56999999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 Q-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
. ...++.+||++|++.+++.+||+||+.|....+ .....++.++++++.+++.+..+..+ ..|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 223567999999999999999999998754221 11222556889999999988777654 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 899999999975 46788999999996 789988874
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=360.33 Aligned_cols=216 Identities=26% Similarity=0.280 Sum_probs=173.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCC--CCCCceeEEEEECCcc
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYVSGSITISGYP 916 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~--~~~~~~~G~i~i~g~~ 916 (1436)
++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|. .+ +.+|+|.++|.+
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEE
Confidence 77888887762 24599999999999999999999999999999999997 44 679999999988
Q ss_pred CCcc---cc-cceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-cccccccccCCCCCC-
Q 046196 917 KNQE---TF-ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-NPIREALVGLPGVSG- 990 (1436)
Q Consensus 917 ~~~~---~~-~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l-~~~~~~~~g~~~~~~- 990 (1436)
+... .. ++.++|++|++.+++.+||+|++.+............++..+.++++++.+++ .+..+..+ ..
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccC
Confidence 6432 11 23489999999999999999999886532111111233344568899999999 47777653 45
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDA-FDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~Gg~ 1069 (1436)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~ 221 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GR 221 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999767999999999986 35555 599999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
+++.|+.
T Consensus 222 i~~~g~~ 228 (250)
T 2d2e_A 222 VVATGGP 228 (250)
T ss_dssp EEEEESH
T ss_pred EEEEeCH
Confidence 9998875
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-39 Score=367.00 Aligned_cols=218 Identities=25% Similarity=0.376 Sum_probs=178.8
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.+. ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 20 ~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~ 84 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKM 84 (279)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBC
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEE
Confidence 3589999988762 2459999999999999999999999999999999999987 569999999987
Q ss_pred CC--c---ccccceEEEeecCCCCC--CCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046196 917 KN--Q---ETFARISGYCEQTDIHS--PHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGV 988 (1436)
Q Consensus 917 ~~--~---~~~~~~~gyv~q~~~~~--~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~ 988 (1436)
+. . ..+++.+||++|++.+. +.+||+||+.+....... .....++..+.++++++.+++.+..+..+
T Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 159 (279)
T 2ihy_A 85 PGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI----- 159 (279)
T ss_dssp CC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----
T ss_pred cccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----
Confidence 64 2 23456799999986543 457999999875321000 01112333456889999999988777664
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEecCCCHHHHHhhCeEEEEec
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|| |++||+++ ++...+|++++|++
T Consensus 160 ~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 160 GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD 238 (279)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 5799999999999999999999999999999999999999999999997669999 99999976 46678999999986
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 239 -G~i~~~g~~ 247 (279)
T 2ihy_A 239 -GQSIQQGAV 247 (279)
T ss_dssp -TEEEEEEEH
T ss_pred -CEEEEECCH
Confidence 789998874
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=350.41 Aligned_cols=202 Identities=23% Similarity=0.355 Sum_probs=172.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
+|+|||+++++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 59999999999 999999999999999999999999998 9999999998754322 357999999999999999999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+.|+.+..+. .. ....++.+++.+||++..+..+ ..||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDRKP-----ARLS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTCCG-----GGSC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcCCh-----hhCC
Confidence 99987432110 00 0123466789999988777555 4699
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
|||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH-TCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986533 4555667899999999999999999999999
Q ss_pred ecChhHHHH
Q 046196 408 QGPRENVLE 416 (1436)
Q Consensus 408 ~G~~~~~~~ 416 (1436)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=356.39 Aligned_cols=221 Identities=24% Similarity=0.293 Sum_probs=179.0
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+
T Consensus 19 ~~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~ 85 (267)
T 2zu0_C 19 HMLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 85 (267)
T ss_dssp -CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 3589999988762 245999999999999999999999999999999999984222679999999987
Q ss_pred CCcc---cc-cceEEEeecCCCCCCCCcHHHHHHHHHH-hc---CCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 046196 917 KNQE---TF-ARISGYCEQTDIHSPHVTVYESLVYSAW-LR---LPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPG 987 (1436)
Q Consensus 917 ~~~~---~~-~~~~gyv~q~~~~~~~lTv~e~l~~~~~-l~---~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~ 987 (1436)
+... .. ++.++|++|++.+++.+||.|++.+... .+ .....+.++..+.++++++.+++. +..+..++
T Consensus 86 i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--- 162 (267)
T 2zu0_C 86 LLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN--- 162 (267)
T ss_dssp GGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT---
T ss_pred CCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc---
Confidence 6421 12 2348999999999999999999987541 11 111223334456788999999996 45565432
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh-hCeEEEEec
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDA-FDELLLMKR 1066 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~ 1066 (1436)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 163 -~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~ 240 (267)
T 2zu0_C 163 -VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ 240 (267)
T ss_dssp -TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET
T ss_pred -cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC
Confidence 249999999999999999999999999999999999999999999998767999999999976 34444 899999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 241 -G~i~~~g~~ 249 (267)
T 2zu0_C 241 -GRIVKSGDF 249 (267)
T ss_dssp -TEEEEEECT
T ss_pred -CEEEEEcCH
Confidence 789999986
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=354.51 Aligned_cols=205 Identities=24% Similarity=0.359 Sum_probs=173.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCC-CcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQND-LHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~-~~~~~lTV 245 (1436)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.....++.++|++|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999998 999999998875432345799999995 56778999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc--ccccccccCccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE--VCADTMVGDEML 323 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 323 (1436)
+||+.|+.... ... .+....++.+++.+||+ +..+..+
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 000 00112346678999998 7776555
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..+||+|++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999998653 556666889988888899999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=350.88 Aligned_cols=207 Identities=21% Similarity=0.338 Sum_probs=173.5
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+
T Consensus 4 ~l~i~~l~~~y~------------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~----- 64 (253)
T 2nq2_C 4 ALSVENLGFYYQ------------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIEV----- 64 (253)
T ss_dssp EEEEEEEEEEET------------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEEE-----
T ss_pred eEEEeeEEEEeC------------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEE-----
Confidence 378888887662 02459999999999999999999999999999999999987 56999982
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
++.+||++|++.+++.+||+||+.+....... ......+..+.++++++.+++.+..+.. +..||||||
T Consensus 65 -----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~ 134 (253)
T 2nq2_C 65 -----YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQR 134 (253)
T ss_dssp -----CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHH
T ss_pred -----eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHH
Confidence 35689999999988899999999986432211 0011233345688999999998877765 357999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ .+...+|++++|++ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999876 999999999975 46678999999997 57 88886
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 212 ~ 212 (253)
T 2nq2_C 212 T 212 (253)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=352.00 Aligned_cols=193 Identities=22% Similarity=0.331 Sum_probs=168.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCcHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
+|+|+|+++++||+++|+|||||||||||++|+|..+ +. |+|.++|.++.. ..+++.+||++|+..+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 8999999999999999999999999999999999987 56 999999987632 23456799999999889999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-------cceee
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS-------IIFMD 1015 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~-------illlD 1015 (1436)
||+.+... +. .. .+.++++++.+++.+..+.. +..||||||||++|||||+.+|+ +|+||
T Consensus 92 e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987421 11 11 34578999999998877765 35799999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||+|||+.++..+++.|++++++|+|||+++|+++ .+...+|++++|++ |++++.|+.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999777999999999975 46678999999996 788888874
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=361.98 Aligned_cols=212 Identities=26% Similarity=0.352 Sum_probs=174.3
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
...++++|+++.++ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCE
Confidence 34699999998873 12459999999999999999999999999999999999987 57999999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR-------EALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~-------~~~~g~ 985 (1436)
++.. ..+++.+|||+|++.+++ .||+||+.|+.. .... +.++++++.+++.+.. ++.+|.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 8754 335677999999998875 699999987531 1121 2245666666665433 333443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
. +.+||||||||++|||||+.+|+||+|||||||||+.+...|++.|+++.+ ++|||+++|+++ ....+|+|++|+
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~aD~i~vl~ 262 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS--TVVNADQILVIK 262 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH--HHHTCSEEEEEE
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH--HHHcCCEEEEEE
Confidence 2 468999999999999999999999999999999999999999999999864 799999999975 345599999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 263 ~-G~iv~~G~~ 272 (306)
T 3nh6_A 263 D-GCIVERGRH 272 (306)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999985
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=351.18 Aligned_cols=212 Identities=27% Similarity=0.422 Sum_probs=174.5
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++ .+++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 4689999988762 012469999999999999999999999999999999999987 569999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV-------GLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~-------g~~ 986 (1436)
+.. ..+++.+||++|++.+++ .||+||+.+.. + ... .+.++++++.+++.+..+... +.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~- 141 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE- 141 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-
Confidence 643 234567999999988876 69999998642 1 111 223577888888876554432 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++. + ..+|++++|++
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 246899999999999999999999999999999999999999999999985 59999999999763 3 56999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|++++.|+.
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 789998874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=356.07 Aligned_cols=214 Identities=22% Similarity=0.309 Sum_probs=171.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. .+++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPN----------HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTT----------CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 5899999887631 012459999999999999999999999999999999999987 5699999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHc--CCcccccccccCCC
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDT-----RKMFVEEVMELV--ELNPIREALVGLPG 987 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~v~~vl~~l--~l~~~~~~~~g~~~ 987 (1436)
.. ..+++.+||++|++.+++ .||+||+.+.... ....++ ....++++++.+ ++....+..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~----- 153 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGET----- 153 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----
Confidence 43 224567999999988877 5999999875311 111011 112245667777 666555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ +|+|||++||+++ ....+|++++|++
T Consensus 154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 4899999999965 3456999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 788888874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=354.33 Aligned_cols=210 Identities=26% Similarity=0.310 Sum_probs=168.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--Cccc---cceEEEecCCCCcC-
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME--EFVP---QRTSAYISQNDLHI- 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~~---~~~~~yv~Q~~~~~- 240 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. .... ++.++|++|++...
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999998 999999998875 3221 35699999986543
Q ss_pred -CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 241 -GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 241 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
+.+||+||+.|+..... ..+.. + . .+....++.+++.+||++..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~--~~~~~--------------~--~------------~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI--GVYQD--------------I--D------------DEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------C--C------------HHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc--ccccC--------------C--c------------HHHHHHHHHHHHHcCChhHhcCChh
Confidence 35699999998632100 00000 0 0 0011245668999999887776554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEE-EEEecCchhHHHhcccEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAV-ISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~i-i~i~q~~~~~~~~~D~ii 398 (1436)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++... +.|+. +.++|+..++.++||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 59999999999999999999999999999999999999999999998653 44440 567899888889999999
Q ss_pred EecCCeEEEecChhHHH
Q 046196 399 LLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~ 415 (1436)
+|++|++++.|+++++.
T Consensus 235 ~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEETTEEEEEEEHHHHC
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999988763
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=346.79 Aligned_cols=198 Identities=19% Similarity=0.273 Sum_probs=169.6
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ + .+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 578899887652 2 58999999999999999999999999999999999987 5699999999876
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
. ..++.++|++|++.+++.+||+||+.+....+.. . .+ .+.++++++.+++.+. +.. +..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3466799999999999999999999987654321 1 11 3457889999999876 554 4579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
|++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++++
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999999999999999999999999999999999998766899999999987 4667788877664
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=345.83 Aligned_cols=200 Identities=25% Similarity=0.394 Sum_probs=161.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.+... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 45999999999999999999999999999999999999998 9999999998865432 356999999988775 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-------cccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV-------CADT 316 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~dt 316 (1436)
||+||+.|+... ... + .++.+++.+||.+ ..++
T Consensus 98 tv~enl~~~~~~----~~~---------------------~---------------~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANPG----MSV---------------------E---------------KVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCTT----CCH---------------------H---------------HHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCCC----CCH---------------------H---------------HHHHHHHHhChHHHHHhCcchhhh
Confidence 999999986310 000 0 0112233344432 2344
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.++. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. . +++|+.++|+...+ ..||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~-g~tviivtH~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--K-GRTVIIIAHRLSTV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--T-TSEEEEECSSGGGG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--C-CCEEEEEeCCHHHH-HhCCE
Confidence 4443 356799999999999999999999999999999999999999999999973 2 45566678887766 46999
Q ss_pred EEEecCCeEEEecChhHHH
Q 046196 397 LILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~ 415 (1436)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=390.63 Aligned_cols=208 Identities=21% Similarity=0.391 Sum_probs=169.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 45899999999999999999999999999999999999998 9999999999876543 3579999999987765
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++... .+.+++.+++...+... ....+++..||.+|+++.
T Consensus 430 tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~~~~--------~~~~lp~g~~t~~~~~g~ 476 (578)
T 4a82_A 430 TVKENILLGRPT-------------------------ATDEEVVEAAKMANAHD--------FIMNLPQGYDTEVGERGV 476 (578)
T ss_dssp BHHHHHGGGCSS-------------------------CCHHHHHHHHHHTTCHH--------HHHTSTTGGGCBCCGGGT
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhCcHH--------HHHhCcchhhhhhccCCC
Confidence 999999987321 11112222222211111 123577888999987654
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+|||||||||+||||++.+|++++|||||||||+.++..+.+.++++.+ ++ +++.++|+...+ ..||+|++|++|
T Consensus 477 -~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~-t~i~itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 477 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DR-TTLIVAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp -TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TS-EEEEECSSGGGT-TTCSEEEEEETT
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CC-EEEEEecCHHHH-HcCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999988632 44 555578877665 569999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++|+.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=347.07 Aligned_cols=205 Identities=21% Similarity=0.281 Sum_probs=163.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC--cCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK--LGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~ 240 (1436)
.++|+|||+++++|++++|+||||||||||+++|+|. ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4599999999999999999999999999999999998 6676 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHhhhhh-cCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCC-cccccccc
Q 046196 241 GEMTVRETLAFSARC-QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGL-EVCADTMV 318 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 318 (1436)
+.+||+||+.++... .+... .. .+....++.+++.+|| ++..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~--------~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV--------GV------------------------AEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC--------CH------------------------HHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC--------CH------------------------HHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999986421 11000 00 0011235668999999 46666554
Q ss_pred cCccccc-CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh-ccc
Q 046196 319 GDEMLRG-ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL-FDD 396 (1436)
Q Consensus 319 g~~~~~~-LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~ 396 (1436)
.. |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .+++|+.++|+..++..+ +|+
T Consensus 141 -----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 -----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRILNYIQPDK 213 (250)
T ss_dssp -----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGGGGTSCCSE
T ss_pred -----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhcCCE
Confidence 45 999999999999999999999999999999999999999999998743 356677788988888777 599
Q ss_pred EEEecCCeEEEecChhH
Q 046196 397 LILLSDGQIVYQGPREN 413 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~ 413 (1436)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999874
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-37 Score=388.04 Aligned_cols=208 Identities=25% Similarity=0.392 Sum_probs=169.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 45899999999999999999999999999999999999998 9999999999877654 357999999998775 5
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++.... +.+.+.+++...+... . ...|++..||.+|+++
T Consensus 432 tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~~~~------~--i~~l~~g~~~~~~~~~- 477 (587)
T 3qf4_A 432 TIKENLKWGREDA-------------------------TDDEIVEAAKIAQIHD------F--IISLPEGYDSRVERGG- 477 (587)
T ss_dssp EHHHHHTTTCSSC-------------------------CHHHHHHHHHHTTCHH------H--HHTSSSGGGCEECSSS-
T ss_pred cHHHHHhccCCCC-------------------------CHHHHHHHHHHhCcHH------H--HHhcccchhhHhcCCC-
Confidence 9999999863210 1111122211111111 1 2357778899998755
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+||||||||++|||||+.+|++|+||||||+||+.++..+.+.++++. ++++++.++|+...+ ..||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT---KGCTTFIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS---TTCEEEEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecChHHH-HhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999863 245556577877654 689999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++|+.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=339.48 Aligned_cols=198 Identities=17% Similarity=0.229 Sum_probs=165.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++|++|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 45999999999999999999999999999999999999998 999983 34699999999888899999
Q ss_pred HHHHhhhhhc-CCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 247 ETLAFSARCQ-GVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 247 E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
||+.|+.... +.... +. ......++.+++.+||++..+..+ ..
T Consensus 85 enl~~~~~~~~~~~~~-----------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------PK--------------SHDYQVAMQALDYLNLTHLAKREF-----TS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHhhhhhcccccC-----------------CC--------------HHHHHHHHHHHHHcCChHHhcCCh-----hh
Confidence 9999874321 10000 00 001123566899999988777554 46
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS-QNMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 9999999999999999999999999999999999999999999998653 25566678999999999999999999999
Q ss_pred EEecChhHHH
Q 046196 406 VYQGPRENVL 415 (1436)
Q Consensus 406 v~~G~~~~~~ 415 (1436)
++.|+++++.
T Consensus 207 ~~~g~~~~~~ 216 (253)
T 2nq2_C 207 FKFGETRNIL 216 (253)
T ss_dssp EEEEEHHHHC
T ss_pred EecCCHHHHh
Confidence 9999988763
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=347.91 Aligned_cols=210 Identities=26% Similarity=0.407 Sum_probs=172.2
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++ +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 56778776652 12458999999999999999999999999999999999987 56999999998864
Q ss_pred c---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCCCC
Q 046196 919 Q---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV-------GLPGV 988 (1436)
Q Consensus 919 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~-------g~~~~ 988 (1436)
. ..+++.+||++|++.+++ .||+||+.+... + ... .+.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234567999999998877 599999976421 1 111 223678889999887665432 22 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ ....+|++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-C
Confidence 6899999999999999999999999999999999999999999999987 6999999999975 3456999999996 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 88887764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=343.86 Aligned_cols=220 Identities=21% Similarity=0.254 Sum_probs=171.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECCccCCCccc----cceEEEecCCCCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL--GKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHI 240 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~ 240 (1436)
+++|+|||++|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 35999999999999999999999999999999999984 465 8999999998765432 23489999999999
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-cccccccc
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTMVG 319 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 319 (1436)
+.+||+|++.+...... ...+ .+..+ ..+....++.+++.+||+ +..+..++
T Consensus 110 ~~~tv~e~~~~~~~~~~---------------~~~~-~~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVR---------------SYRG-QETLD-----------RFDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHHH---------------HGGG-CCCCC-----------HHHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhhh---------------hhhc-cccCC-----------HHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 99999999987532100 0000 00000 001122456789999996 45554442
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh-cccEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL-FDDLI 398 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~ii 398 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.. .+++|+.++|+..++..+ ||+|+
T Consensus 163 ----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 ----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD--GKRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--SSCEEEEECSSGGGGGTSCCSEEE
T ss_pred ----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeeCHHHHHhhcCCEEE
Confidence 14999999999999999999999999999999999999999999998643 356677788988877776 89999
Q ss_pred EecCCeEEEecChhHHHHHHHhcCC
Q 046196 399 LLSDGQIVYQGPRENVLEFFERMGF 423 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~~~f~~~G~ 423 (1436)
+|++|++++.|+++++.. .+..||
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEECCEEEEEcCHHHHhh-hhhcch
Confidence 999999999999988754 344444
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=345.34 Aligned_cols=202 Identities=23% Similarity=0.346 Sum_probs=164.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---ccceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---PQRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 45899999999999999999999999999999999999998 999999999876533 2456999999988776 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc-------c
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD-------T 316 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-------t 316 (1436)
||+||+.|+... . .. ...++.+++.+|+.+..+ +
T Consensus 91 tv~enl~~~~~~-~--~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-D--YT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-C--SC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-C--CC------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999886311 0 00 011234566677765443 3
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. . +++|+.++|+...+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~-~~tvi~vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--K-GRTTLVIAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--T-TSEEEEECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCChHHH-HhCCE
Confidence 333 3456799999999999999999999999999999999999999999999874 2 45566678887665 56999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 046196 397 LILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~~ 416 (1436)
|++|++|++++.|+++++.+
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988754
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=348.24 Aligned_cols=209 Identities=22% Similarity=0.354 Sum_probs=165.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 45899999999999999999999999999999999999998 9999999998765432 356999999988776 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHh--CCcccccccccCc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL--GLEVCADTMVGDE 321 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 321 (1436)
||+||+.|+.... .. .+ +.. ++. ....++.+++.+ ||+...+.
T Consensus 108 tv~enl~~~~~~~--~~-~~---~~~------------------~~~------~~~~~~~~l~~l~~gl~~~~~~----- 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-ME---EIT------------------AVA------MESGAHDFISGFPQGYDTEVGE----- 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC-HH---HHH------------------HHH------HHHTCHHHHHHSTTGGGSBCCG-----
T ss_pred cHHHHHhhhcccC--Ch-HH---HHH------------------HHH------HHHhHHHHHHhhhcchhhhhcC-----
Confidence 9999999864211 00 00 000 000 001123456666 66554443
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++||.++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW-ASRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTT-TTSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 34569999999999999999999999999999999999999999999986432 2556666888877664 599999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|++++.|+++++.+
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=339.48 Aligned_cols=198 Identities=24% Similarity=0.317 Sum_probs=169.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~lT 244 (1436)
++|+|+|+++++|++++|+|||||||||||++|+|.++| . |+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999987 3 999999998754332 356999999998889999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.++... .. . ...++.+++.+||++..+..+ .
T Consensus 90 v~e~l~~~~~~-~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQHD-KT----------R----------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCSS-TT----------C----------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhcc-CC----------c----------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 99999986210 00 0 112456788999988776554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCc-------eeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 325 GISGGQRKRLTTGEMLVGPAR-------ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~-------illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
.|||||||||+||+||+.+|+ +|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999 99999999999999999999999998643 556666899998888999999
Q ss_pred EEecCCeEEEecChhHHH
Q 046196 398 ILLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~ 415 (1436)
++|++|++++.|+++++.
T Consensus 204 ~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEVL 221 (249)
T ss_dssp EEEETTEEEEEEEHHHHS
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=384.51 Aligned_cols=208 Identities=25% Similarity=0.369 Sum_probs=168.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||+|++.++ +.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-ST 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC-SS
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCccc-cc
Confidence 45899999999999999999999999999999999999998 9999999999876544 35799999999876 46
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++.... +.+++.+++...+.+. . .-.+++..||.+|+++.
T Consensus 444 tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~~~~------~--~~~~~~g~~t~~~~~g~ 490 (598)
T 3qf4_B 444 TVKENLKYGNPGA-------------------------TDEEIKEAAKLTHSDH------F--IKHLPEGYETVLTDNGE 490 (598)
T ss_dssp BHHHHHHSSSTTC-------------------------CTTHHHHHTTTTTCHH------H--HHTSTTGGGCBCHHHHT
T ss_pred cHHHHHhcCCCCC-------------------------CHHHHHHHHHHhCCHH------H--HHhccccccchhcCCCC
Confidence 9999999863210 0111222222211111 1 22467788999987654
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+|||||||||+||||++.+|++|+||||||+||+.++..+.+.++++. ++.+++.++|+...+ ..||+|++|++|
T Consensus 491 -~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~t~i~itH~l~~~-~~~d~i~~l~~G 565 (598)
T 3qf4_B 491 -DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM---EGKTSIIIAHRLNTI-KNADLIIVLRDG 565 (598)
T ss_dssp -TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH---TTSEEEEESCCTTHH-HHCSEEEEECSS
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHH-HcCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999874 245555577877665 559999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++|+.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999865
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=417.28 Aligned_cols=210 Identities=23% Similarity=0.371 Sum_probs=177.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|+|||.+||+||+|||||||+++|.|+++|+ +|+|.+||+++++... ++.++||||++.+| +.
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF-~g 1167 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DC 1167 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCC-SE
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEee-Cc
Confidence 45999999999999999999999999999999999999998 9999999999988765 46799999999866 56
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||||||.|+..- ++.+.+++.+|++..+.+.. +-.|+++.||.||+++.
T Consensus 1168 TIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~l~~~--------I~~Lp~GldT~vge~G~ 1216 (1321)
T 4f4c_A 1168 SIAENIIYGLDP-----------------------SSVTMAQVEEAARLANIHNF--------IAELPEGFETRVGDRGT 1216 (1321)
T ss_dssp EHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTTCHHH--------HHTSTTTTCSEETTTSC
T ss_pred cHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhCChHH--------HHcCcCCCCCEecCCCc
Confidence 999999987421 12234455556555444332 34689999999998765
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. ++.|++++.|. ..+...||+|+||++|
T Consensus 1217 -~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~---~~~TvI~IAHR-LsTi~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1217 -QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR---EGRTCIVIAHR-LNTVMNADCIAVVSNG 1291 (1321)
T ss_dssp -SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS---SSSEEEEECSS-SSTTTTCSEEEEESSS
T ss_pred -ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc---CCCEEEEeccC-HHHHHhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999998742 34555556664 4677889999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+|+++|+|+|+++
T Consensus 1292 ~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMS 1304 (1321)
T ss_dssp SEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999986
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=339.24 Aligned_cols=195 Identities=19% Similarity=0.169 Sum_probs=165.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEE-EecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSA-YISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~~~~~~~lTV 245 (1436)
.++|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 459999999999 9999999999999999999999999 98 999999998775421245799 99999876 8999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCc-ccccccccCcccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLE-VCADTMVGDEMLR 324 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 324 (1436)
+||+.++.+... . ....++.+++.+||+ +..+..+ .
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999998643210 0 012345678899998 7766554 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcc-cEEEecCC
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFD-DLILLSDG 403 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D-~iivL~~G 403 (1436)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. . +++.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998752 2 66668899888889999 99999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
++++.|+++++.+
T Consensus 203 ~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 203 RLQGPISVSELLE 215 (263)
T ss_dssp EEEEEEEHHHHHT
T ss_pred EEEEecCHHHHHh
Confidence 9999999988753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=342.71 Aligned_cols=211 Identities=25% Similarity=0.384 Sum_probs=170.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. ...+.+|+|||++|++||+++|+||||||||||+++|+|..+ + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPK----------QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTT----------CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCC----------CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 4889999887631 011359999999999999999999999999999999999875 4 79999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR-------EALVGLPG 987 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~-------~~~~g~~~ 987 (1436)
.. ..+++.+||++|++.+++ .||+||+.+.. . ... .+.+.++++.+++.+.. ++.++. .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~ 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK----L-DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-K 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC----T-TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-S
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC----C-CCC----HHHHHHHHHHhCCHHHHHhccccccccccC-C
Confidence 43 234567999999998876 69999998742 1 111 12346677777765432 222332 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ |+|||+++|+++. + ..+|++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 568999999999999999999999999999999999999999999999864 8999999999863 3 56999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 788888874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=340.50 Aligned_cols=206 Identities=18% Similarity=0.192 Sum_probs=170.8
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.++.. ...+.+|+|+|++++ ||+++|+|||||||||||++|+|.. + .+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5677887765310 011459999999999 9999999999999999999999987 4 5899999998754
Q ss_pred cccccceEE-EeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHH
Q 046196 919 QETFARISG-YCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 919 ~~~~~~~~g-yv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGqr 996 (1436)
....++.+| |++|++.+ .+||+||+.+...+. ... .+.++++++.+++. +..+.. +..||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRK-----LYKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCC-----hhhCCHHHH
Confidence 211145689 99999877 899999999876443 111 23478999999998 777765 357999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhC-eEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD-ELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D-~v~~l~~Gg~~~y~G~ 1075 (1436)
||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ |||++||+++ .+...+| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998753 9999999986 4667899 9999986 78999887
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=375.09 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=165.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 35899999999999999999999999999999999999998 9999999998865433 357999999998776 5
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++.. .. .+.+.+.++++..+.+ ..+ -.+++..||.+|+++
T Consensus 432 tv~eni~~~~~-~~-----------------------~~~~~~~~~~~~~~l~------~~~--~~~p~g~~t~~~~~~- 478 (582)
T 3b5x_A 432 TIANNIAYAAE-GE-----------------------YTREQIEQAARQAHAM------EFI--ENMPQGLDTVIGENG- 478 (582)
T ss_pred cHHHHHhccCC-CC-----------------------CCHHHHHHHHHHCCCH------HHH--HhCcccccchhcCCC-
Confidence 99999998631 00 0001111111111110 111 135667889998764
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+||||||||++||||++.+|++|+|||||||||+.++..+.+.++++.+ +++++.++|+...+ +.||+|++|++|
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~-~~~d~i~~l~~G 554 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK---NKTVLVIAHRLSTI-EQADEILVVDEG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC---CCEEEEEecCHHHH-HhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998742 44555577776554 579999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 555 EIIERGRHADLLA 567 (582)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-36 Score=338.74 Aligned_cols=200 Identities=21% Similarity=0.323 Sum_probs=161.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++|++++|+||||||||||+++|+|.+++ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 3589999999999999999999999999999999999864 7999999998765432 356999999998775 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHh-------CCcccccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL-------GLEVCADT 316 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 316 (1436)
||+||+.|+... ... +.+ ..+++.+ ++++..||
T Consensus 108 tv~enl~~~~~~----~~~---------------------~~~---------------~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKLD----ATD---------------------EEV---------------IKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCTT----CCH---------------------HHH---------------HHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCCC----CCH---------------------HHH---------------HHHHHHhCCHHHHHhccccccc
Confidence 999999986310 000 000 1112222 45666777
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.++. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +++|+.++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~---~~tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK---NRTLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT---TSEEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHH-HhCCE
Confidence 7754 4567999999999999999999999999999999999999999999998742 45666678887765 46999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 046196 397 LILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~~ 416 (1436)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=357.33 Aligned_cols=199 Identities=23% Similarity=0.255 Sum_probs=162.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|++.+++ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 458999999999999999999999999999999999986 5 8999999999876654 367999999998776 6
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc-------c
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD-------T 316 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-------t 316 (1436)
||+||+.+.... . ...++.+++.+||.+..+ |
T Consensus 109 tv~enl~~~~~~-----~------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH-----S------------------------------------DQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS-----C------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc-----C------------------------------------HHHHHHHHHHhCCHHHHhhccccccc
Confidence 999999753210 0 011234566677765444 3
Q ss_pred cccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.+++. ..+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|++.. .+++++.++|+. +....+|+
T Consensus 148 ~i~~~-g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~-e~~~~aDr 222 (390)
T 3gd7_A 148 VLVDG-GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARI-EAMLECDQ 222 (390)
T ss_dssp EECTT-TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSS-GGGTTCSE
T ss_pred ccccc-cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCH-HHHHhCCE
Confidence 34332 23599999999999999999999999999999999999999999998742 345666678875 56677999
Q ss_pred EEEecCCeEEEecChhHHHH
Q 046196 397 LILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 397 iivL~~G~iv~~G~~~~~~~ 416 (1436)
|++|++|+|++.|+++++.+
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999854
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=373.77 Aligned_cols=209 Identities=23% Similarity=0.367 Sum_probs=167.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 45899999999999999999999999999999999999998 9999999999876543 357999999998776 5
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.++.. .. .+.+.+.++++..+.+ ..++ .+++..||.+|+++
T Consensus 432 tv~eni~~~~~-~~-----------------------~~~~~~~~~l~~~~l~------~~~~--~~p~g~~~~~~~~~- 478 (582)
T 3b60_A 432 TVANNIAYART-EE-----------------------YSREQIEEAARMAYAM------DFIN--KMDNGLDTIIGENG- 478 (582)
T ss_dssp BHHHHHHTTTT-SC-----------------------CCHHHHHHHHHTTTCH------HHHH--HSTTGGGSBCCTTS-
T ss_pred CHHHHHhccCC-CC-----------------------CCHHHHHHHHHHcCCH------HHHH--hccccccccccCCC-
Confidence 99999998631 00 0011111221111111 1111 25667889998764
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+|||||||||+||||++.+|++|+|||||||||+.++..+.+.++++.+ +++++.++|+...+ +.||+|++|++|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~-~~~d~i~~l~~G 554 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTI-EQADEIVVVEDG 554 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGGT-TTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEeccHHHH-HhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998742 44555577776655 579999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999999864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=327.82 Aligned_cols=196 Identities=21% Similarity=0.316 Sum_probs=152.6
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 45899999999999999999999999999999999999998 99999998 48999999987775 999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.|+.... . . .. +...+...+ +..++. ++...+|.+++ ....|
T Consensus 87 enl~~~~~~~----~-~---~~---------------~~~~~~~~l---------~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-Y---RY---------------RSVIKACQL---------EEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-H---HH---------------HHHHHHTTC---------HHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-H---HH---------------HHHHHHhCc---------HHHHHh--CcccccccccC-CCCcC
Confidence 9999863210 0 0 00 000000000 011222 23344556653 35679
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHH-HHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSL-RQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
||||||||+|||||+.+|++++|||||+|||+.++..+.+.+ ++.. .+++|+.++|+...+ ..||+|++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~---~~~tvi~vtH~~~~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh---CCCEEEEEcCChHHH-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999864 4432 245666678887665 46999999999999
Q ss_pred EEecChhHHH
Q 046196 406 VYQGPRENVL 415 (1436)
Q Consensus 406 v~~G~~~~~~ 415 (1436)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998875
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-36 Score=327.88 Aligned_cols=188 Identities=18% Similarity=0.226 Sum_probs=155.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++|++|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999998 999999998875 23567999999998899999999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+.++.+..+. . .+ ...++.+++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99987543210 0 00 1234567889999865 543 45699
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..++|+|+++ +|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999998642 455666788888888888887754 4544
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=327.40 Aligned_cols=200 Identities=22% Similarity=0.358 Sum_probs=159.5
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4788998876531 23469999999999999999999999999999999999987 5699999998
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCC
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA-------LVGLPGVSG 990 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~-------~~g~~~~~~ 990 (1436)
.++|++|++.+++. ||+||+.+... .... ..+++++.+++.+..+. .++. .+..
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCc
Confidence 38999999988875 99999986421 1111 13345555555432221 2222 2468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
||||||||++|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||+++|+++ ....+|++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999965 3356999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8888874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=329.65 Aligned_cols=199 Identities=23% Similarity=0.377 Sum_probs=157.5
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+.. +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 778888876531 12469999999999999999999999999999999999987 6799999998
Q ss_pred cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc------ccc-cccccCCCCCCC
Q 046196 919 QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN------PIR-EALVGLPGVSGL 991 (1436)
Q Consensus 919 ~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~------~~~-~~~~g~~~~~~L 991 (1436)
.+||++|++. ++.+||+||+.+.... ..+ + .+++++.+++. +.. ++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EEP-Y---YRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CTT-H---HHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CHH-H---HHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 2899999976 4688999999875311 111 1 23334444332 211 112222 25689
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
|||||||++|||||+.+|++|+|||||+|||+.++..+++.|+ ++. +|+|||++||+++. + ..+|++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 48999999999873 3 57999999996 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 88888874
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=352.75 Aligned_cols=211 Identities=21% Similarity=0.302 Sum_probs=175.0
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.+. .+++.+|+|||++|++||+++|+|||||||||||++|+|..+ .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~y~-----------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYT-----------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESS-----------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEec-----------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 4689999988763 123569999999999999999999999999999999999874 58999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL------PG 987 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~------~~ 987 (1436)
+.. ..+++.+||++|+..+++ +||+||+.+.. ... ++.++++++.++|.+..+..... ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 753 234577999999999887 69999995321 111 23468899999998777665321 11
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
..+|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++. .++|||+++|+.+ ....+|+|++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~- 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE- 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-
Confidence 23499999999999999999999999999999999999999999999864 4899999999964 4567999999996
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|++
T Consensus 229 G~i~~~g~~ 237 (390)
T 3gd7_A 229 NKVRQYDSI 237 (390)
T ss_dssp TEEEEESSH
T ss_pred CEEEEECCH
Confidence 799999975
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=331.39 Aligned_cols=199 Identities=23% Similarity=0.340 Sum_probs=154.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 45899999999999999999999999999999999999987 99999999 4899999986 5689999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCC-cccccccccCccccc
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGL-EVCADTMVGDEMLRG 325 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg~~~~~~ 325 (1436)
||+.|+.... . +. .+...++. .+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~---~--~~------------------~~~~~~~~------------~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE---E--PY------------------YRSVIQAC------------ALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC---T--TH------------------HHHHHHHT------------TCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC---H--HH------------------HHHHHHHH------------hhHHHHHhcccccccccc-CCCCC
Confidence 9999864211 0 00 00000100 01223333 223344454 44567
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++......+++|+.++|+...+ ..||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999885211111245666678887665 57999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
++.|+++++.+
T Consensus 207 ~~~g~~~~~~~ 217 (237)
T 2cbz_A 207 SEMGSYQELLA 217 (237)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHhh
Confidence 99999998754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=369.02 Aligned_cols=213 Identities=20% Similarity=0.316 Sum_probs=173.6
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
+..++++|+++.++. +.+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSS
T ss_pred CCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCE
Confidence 346999999987741 23469999999999999999999999999999999999987 57999999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-------IREALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~ 985 (1436)
++.. ..+++.++||+|++.+++. ||+||+.++. + ..+.+ .+.+.++..++.+ -.++.+|.
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR----E-DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC----S-SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC----C-CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 8753 3456779999999988864 9999997642 1 12222 2344455544432 23444444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
. +.+||||||||++|||||+++|+||+||||||+||+.+...+++.|+++. +|+|+|+++|+++ ....+|+|++|+
T Consensus 476 ~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~ 551 (587)
T 3qf4_A 476 G-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH 551 (587)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE
T ss_pred C-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE
Confidence 3 56899999999999999999999999999999999999999999999974 5899999999975 456899999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 552 ~-G~i~~~g~~ 561 (587)
T 3qf4_A 552 E-GKVAGFGTH 561 (587)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999985
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=366.36 Aligned_cols=213 Identities=25% Similarity=0.382 Sum_probs=174.3
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
...++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 346999999987641 23469999999999999999999999999999999999987 57999999998
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~ 985 (1436)
++.. ..+++.+|||+|++.+++. ||+||+.++. + ..+. +.+.++++..++.+. .++.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 8643 3456779999999988875 9999998752 2 1122 224566666665433 2344443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
. +.+||||||||++|||||+++|++|+|||||||||+.+...+.+.++++. +|+|+|+++|+++. ...+|++++|+
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEE
Confidence 2 45899999999999999999999999999999999999999999999885 47999999999873 46699999999
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 550 ~-G~i~~~g~~ 559 (578)
T 4a82_A 550 N-GHIVETGTH 559 (578)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 6 799999985
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=365.30 Aligned_cols=213 Identities=21% Similarity=0.305 Sum_probs=176.3
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEE
Confidence 45999999887631 11459999999999999999999999999999999999987 579999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIR-------EALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~-------~~~~g~~ 986 (1436)
+.. ..+++.+||++|++.+++ .||+||+.++.. + ..+ ++.++++++.+++.+.. ++.+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 743 335567999999998887 499999987531 1 122 23367788888876543 3344433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+.+||||||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|+|+++|+++ ..+.+|++++|++
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 553 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED 553 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999865 899999999986 3457999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 554 -G~i~~~g~~ 562 (582)
T 3b60_A 554 -GIIVERGTH 562 (582)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEecCH
Confidence 789999975
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=363.55 Aligned_cols=213 Identities=24% Similarity=0.323 Sum_probs=176.4
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 46999999988731 12459999999999999999999999999999999999987 569999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA-------LVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~-------~~g~~ 986 (1436)
+.. ..+++.+||++|++.+++ .||+||+.++.. + ..+ .+.++++++.+++.+..+. .+|..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998887 499999987531 1 122 2336788888888655433 33432
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
+.+||||||||++|||||+++|++|+|||||||||+.++..+++.|+++.+ |+|+|+++|+++ ..+.+|++++|++
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 553 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 468999999999999999999999999999999999999999999999864 899999999975 4467999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 554 -G~i~~~g~~ 562 (582)
T 3b5x_A 554 -GEIIERGRH 562 (582)
T ss_pred -CEEEEECCH
Confidence 789998875
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=360.78 Aligned_cols=211 Identities=25% Similarity=0.405 Sum_probs=170.9
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++.++ +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEE
Confidence 4699999998763 12459999999999999999999999999999999999987 579999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIRE-------ALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~-------~~~g~~ 986 (1436)
+.. ..+++.+||++|++.+++ .||+||+.++. + ..+.+ .++++++..++.+..+ +.+|.
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~- 487 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD- 487 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH-
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC-
Confidence 643 345678999999998875 59999998642 1 11211 1345555555543322 22221
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
.+.+||||||||++|||||+++|++|+||||||+||+.+...+++.|+++. +|+|+|+++|+++. ...+|+|++|++
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~ 564 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLRD 564 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC
Confidence 135799999999999999999999999999999999999999999999985 58999999999873 456999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 565 -G~i~~~g~~ 573 (598)
T 3qf4_B 565 -GEIVEMGKH 573 (598)
T ss_dssp -SSEEECSCH
T ss_pred -CEEEEECCH
Confidence 789999975
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=321.33 Aligned_cols=195 Identities=23% Similarity=0.371 Sum_probs=148.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.. +.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 47788887631 348999999999999999999999999999999999987 6799999998
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCC
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREA-------LVGLPGVSG 990 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~-------~~g~~~~~~ 990 (1436)
.++|++|++.+++. ||+||+. .. . ... . .++++++.+++.+..+. ..+. .+..
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~-~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE-Y---RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH-H---HHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch-H---HHHHHHHHhChHHHHHhccccccchhcC-ccCc
Confidence 37999999888775 9999997 21 1 111 1 13445556666433222 1221 2468
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
||||||||++|||||+.+|++|+|||||+|||+.++..+++.+ +++. +|+|||+++|+++ ....+|++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 5554 4899999999975 3456999999996 78
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 8888875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=319.18 Aligned_cols=195 Identities=21% Similarity=0.310 Sum_probs=149.1
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 4899999999999999999999999999999999999987 99999998 4899999988776 59999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
|+. +... .. .. . +...+...+ +..++. ++...++.++. .+..||
T Consensus 118 nl~-~~~~----~~-~~---~---------------~~~~~~~~l---------~~~l~~--~~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YR---Y---------------RSVIKACQL---------EEDISK--FAEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HH---H---------------HHHHHHTTC---------HHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HH---H---------------HHHHHHhCh---------HHHHHh--ccccccchhcC-ccCcCC
Confidence 998 4211 00 00 0 000000000 111222 23344555653 355799
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHH-HHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEE
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSL-RQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv 406 (1436)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.+ +++. .+++|+.++|+...+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~---~~~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh---CCCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 245666678887665 569999999999999
Q ss_pred EecChhHHHH
Q 046196 407 YQGPRENVLE 416 (1436)
Q Consensus 407 ~~G~~~~~~~ 416 (1436)
+.|+++++.+
T Consensus 238 ~~g~~~~l~~ 247 (290)
T 2bbs_A 238 FYGTFSELQN 247 (290)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHhh
Confidence 9999998753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=380.30 Aligned_cols=210 Identities=21% Similarity=0.355 Sum_probs=170.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++++... ++.++||+|++.++ +.
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-cc
Confidence 35899999999999999999999999999999999999998 9999999999876553 35799999999755 67
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+|||.++...... +.+++.+++...+.+ .. .-.+++..||.||+++.
T Consensus 1122 ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~~~~~------~~--i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVV-----------------------SYEEIVRAAKEANIH------QF--IDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp BHHHHHTCCCSSCCC-----------------------CHHHHHHHHHHHTCH------HH--HSSTTTGGGCBCSTTSC
T ss_pred cHHHHHhccCCCCCC-----------------------CHHHHHHHHHHhCcH------HH--HHhCccccccccCCCCC
Confidence 999999987432110 111122221111111 11 23478889999997654
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. ++.+++.++|+...+ ..||+|++|++|
T Consensus 1171 -~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~---~~~tvi~isH~l~~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1171 -QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR---EGRTCIVIAHRLSTI-QNADLIVVIQNG 1245 (1284)
T ss_dssp -SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS---SSSCEEEECSCTTGG-GSCSEEEEEETB
T ss_pred -ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecCHHHH-HcCCEEEEEECC
Confidence 699999999999999999999999999999999999999999998742 345566688888776 569999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+++++|+++++++
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=319.36 Aligned_cols=191 Identities=25% Similarity=0.262 Sum_probs=160.8
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
.|+++|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++ ..++|++|+....+.+||+|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~----------~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWD----------LTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCCC----------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEEe----------eEEEEEecCccCCCCCcHHHH
Confidence 578888889999999999999999999999999999998 8999762 369999999877788999998
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
+....... + .....++.+|+.+||.+..+..++ .|||
T Consensus 438 ~~~~~~~~-----~---------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----L---------------------------------NSNFYKTELLKPLGIIDLYDRNVE-----DLSG 474 (607)
T ss_dssp HHHHHHHH-----H---------------------------------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCH
T ss_pred HHhhhccC-----C---------------------------------CHHHHHHHHHHHcCCchHhcCChh-----hCCH
Confidence 86531000 0 001234567899999877776554 5999
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC--CeEE
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD--GQIV 406 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~--G~iv 406 (1436)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999986533 45666689999999999999999986 8899
Q ss_pred EecChhHHHH
Q 046196 407 YQGPRENVLE 416 (1436)
Q Consensus 407 ~~G~~~~~~~ 416 (1436)
..|+++++.+
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999998865
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=316.09 Aligned_cols=191 Identities=25% Similarity=0.262 Sum_probs=159.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
.|+++|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++ ..++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~----------~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWD----------LTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCCC----------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEC----------ceEEEEecCCcCCCCCcHHHH
Confidence 577888889999999999999999999999999999998 8999752 359999999877788999988
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
+...... . .. ....++.+++.+||.+..+..+ ..|||
T Consensus 368 ~~~~~~~-~----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 404 (538)
T 1yqt_A 368 LSKIDAS-K----------LN---------------------------SNFYKTELLKPLGIIDLYDREV-----NELSG 404 (538)
T ss_dssp HHHHHHH-H----------HT---------------------------CHHHHHHTTTTTTCGGGTTSBG-----GGCCH
T ss_pred HHhhhcc-C----------CC---------------------------HHHHHHHHHHHcCChhhhcCCh-----hhCCH
Confidence 7643100 0 00 0113455788899987766555 45999
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC--CeEE
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD--GQIV 406 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~--G~iv 406 (1436)
||||||+||++|+.+|++|||||||+|||..+...+.+.|+++++.. +.+|+.++|+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999986433 45566689999999999999999986 8899
Q ss_pred EecChhHHHH
Q 046196 407 YQGPRENVLE 416 (1436)
Q Consensus 407 ~~G~~~~~~~ 416 (1436)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=311.85 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=158.6
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
.|+++|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|. .++|++|+....+.+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe---------eeEeechhcccccCCCHHHH
Confidence 467778889999999999999999999999999999998 999997763 58999998776778999999
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
+.+..... . .. ....++.+++.+||.+..+..+ ..|||
T Consensus 351 l~~~~~~~-~-------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-------------------ST-----------------SSWFFEEVTKRLNLHRLLESNV-----NDLSG 388 (538)
T ss_dssp HHHHCSST-T-------------------CT-----------------TSHHHHHTTTTTTGGGCTTSBG-----GGCCH
T ss_pred HHHhhhhc-c-------------------ch-----------------hHHHHHHHHHHcCCHHHhcCCh-----hhCCH
Confidence 98642100 0 00 0112355678889987777555 46999
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC--CeEE
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD--GQIV 406 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~--G~iv 406 (1436)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|+.++|+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998754 356666789999999999999999986 6677
Q ss_pred EecChhHHH
Q 046196 407 YQGPRENVL 415 (1436)
Q Consensus 407 ~~G~~~~~~ 415 (1436)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777776554
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=312.16 Aligned_cols=193 Identities=23% Similarity=0.226 Sum_probs=159.5
Q ss_pred ceeeecceEEEeCC-----eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCC
Q 046196 167 LTILHDVSGIIKPQ-----RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIG 241 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~ 241 (1436)
..+++|+|+++++| |+++|+||||||||||+++|+|+++|+ +|+. + ....++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 789999999999999999999999998 7852 1 1346899999977677
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
..||+|++....+ +. . .....++.+++.+||.+..+..+
T Consensus 427 ~~tv~e~~~~~~~--~~---~---------------------------------~~~~~~~~~l~~l~l~~~~~~~~--- 465 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQ---F---------------------------------LNPQFQTDVVKPLRIDDIIDQEV--- 465 (608)
T ss_dssp CSBHHHHHHHHCS--ST---T---------------------------------TSHHHHHHTHHHHTSTTTSSSBS---
T ss_pred CccHHHHHHHHhh--cc---c---------------------------------ccHHHHHHHHHHcCChhhhcCCh---
Confidence 7899998754211 00 0 00012345788999988777655
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.... +.+|+.++|+..++..++|+|++|+
T Consensus 466 --~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 466 --QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp --SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEECE
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 4599999999999999999999999999999999999999999999986543 4566668999999999999999998
Q ss_pred C--CeEEEecChhHHHH
Q 046196 402 D--GQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~--G~iv~~G~~~~~~~ 416 (1436)
+ |+++..|++++++.
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999999875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-31 Score=333.10 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=115.0
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHH
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAW 950 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~ 950 (1436)
++.+++|++++|+|+||||||||++.++|...+ .|+ +.+.|++|+.. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 458999999999999999999999999986542 232 12345555431 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH-----H
Q 046196 951 LRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1025 (1436)
Q Consensus 951 l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~-----~ 1025 (1436)
+. ..+. ++ +...|+..+.+.. +..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 1121 22 2235555554443 3579999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCC---------HHHHHhhCeEEEEecC
Q 046196 1026 AAIVMRTVRNTVDTGRTVVCTIHQPS---------IDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1026 ~~~i~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~~D~v~~l~~G 1067 (1436)
+..+.++++.+++.|.|||+++|+.. ..+...+|+|++|.+|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 99999999999888999999999971 2355689999999874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-28 Score=312.88 Aligned_cols=193 Identities=19% Similarity=0.260 Sum_probs=155.3
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.+...|+++.+. ++.+|+|+||++++|++++|+|||||||||||++|+| |+| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 456667776652 3469999999999999999999999999999999994 222 34432
Q ss_pred CcccccceEEEeecCC-CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 046196 918 NQETFARISGYCEQTD-IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~LSgGq 995 (1436)
.. ...++|++|+. .+++.+||.|++.+ ... .. .+.++++++.+|+. +..+..+ ..|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~----~~~-~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE----SGV-GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT----TCS-SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH----hhc-CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 21 12368999874 67789999999975 111 11 34578999999995 5666654 4799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE-EEc
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI-YVG 1074 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~-y~G 1074 (1436)
|||++||++|+.+|+||+|||||+|||+.++..+.+.|++ .|+|||+++|++. .+...+|++++|++ |+++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999998 5899999999975 56778999999996 5765 788
Q ss_pred CC
Q 046196 1075 PL 1076 (1436)
Q Consensus 1075 ~~ 1076 (1436)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 75
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=314.20 Aligned_cols=204 Identities=22% Similarity=0.303 Sum_probs=133.2
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHH---------------------HhHcCCCCCC--c---eeEEEEECCccC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--Y---VSGSITISGYPK 917 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl---------------------~~L~g~~~~~--~---~~G~i~i~g~~~ 917 (1436)
+.+|+||||+|++||++||+||||||||||+ +++.|...++ . ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999997 6666654432 1 146777777654
Q ss_pred CcccccceEEEeecCCC-------------------CCCCCcHHHHHHHHHHhcCCCCCCHHHHH------HHHHHHHHH
Q 046196 918 NQETFARISGYCEQTDI-------------------HSPHVTVYESLVYSAWLRLPPEVDSDTRK------MFVEEVMEL 972 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~-------------------~~~~lTv~e~l~~~~~l~~~~~~~~~~~~------~~v~~vl~~ 972 (1436)
... .++.+|+++|... .++.+||+|++.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 1233455554332 2357899999987533221110 000000 011235788
Q ss_pred cCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--cceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 046196 973 VELNPI-REALVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049 (1436)
Q Consensus 973 l~l~~~-~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~--illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1049 (1436)
+||.+. .+.. +..|||||||||+|||||+.+|+ +|+|||||+|||+.++..+++.|++++++|.|||+++|+
T Consensus 189 ~gL~~~~~~~~-----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCB-----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCC-----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 888764 3554 35799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CCHHHHHhhCeEEEEe-----cCcEEEEEcCC
Q 046196 1050 PSIDIFDAFDELLLMK-----RGGEEIYVGPL 1076 (1436)
Q Consensus 1050 ~~~~~~~~~D~v~~l~-----~Gg~~~y~G~~ 1076 (1436)
++ ....+|++++|. ++|++++.|+.
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCH
Confidence 65 456799999993 35899999985
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=278.90 Aligned_cols=107 Identities=25% Similarity=0.305 Sum_probs=91.5
Q ss_pred HHHHHHHhCCcc-cccccccCcccccCChhhhhHHHHHHHHhcCC---ceeEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 046196 301 TDYVLKILGLEV-CADTMVGDEMLRGISGGQRKRLTTGEMLVGPA---RALFMDEISTGLDSSTTYQIVNSLRQSIHILN 376 (1436)
Q Consensus 301 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~illLDEptsgLD~~t~~~i~~~l~~~~~~~~ 376 (1436)
...+|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 825 ~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~--~ 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD--N 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--C
Confidence 356799999976 44544 4569999999999999999764 99999999999999999999999999865 3
Q ss_pred CeEEEEEecCchhHHHhcccEEEe------cCCeEEEecChhHHH
Q 046196 377 GTAVISLLQPAPETYELFDDLILL------SDGQIVYQGPRENVL 415 (1436)
Q Consensus 377 ~t~ii~i~q~~~~~~~~~D~iivL------~~G~iv~~G~~~~~~ 415 (1436)
+.+|++++|+..++ ..+|+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 56666688988765 789999999 799999999999875
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-24 Score=276.51 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=91.5
Q ss_pred HHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCC---ceeEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 046196 300 VTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA---RALFMDEISTGLDSSTTYQIVNSLRQSIHILN 376 (1436)
Q Consensus 300 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~illLDEptsgLD~~t~~~i~~~l~~~~~~~~ 376 (1436)
.+..+|+.+||.... +| +...+|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 784 ~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~- 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R- 857 (916)
T ss_dssp HHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c-
Confidence 455689999997421 22 344579999999999999999865 79999999999999999999999999865 3
Q ss_pred CeEEEEEecCchhHHHhcccEEEe------cCCeEEEecChhHHHH
Q 046196 377 GTAVISLLQPAPETYELFDDLILL------SDGQIVYQGPRENVLE 416 (1436)
Q Consensus 377 ~t~ii~i~q~~~~~~~~~D~iivL------~~G~iv~~G~~~~~~~ 416 (1436)
+.+||+++|+...+ ..||+|++| ++|+|+++|+++++.+
T Consensus 858 G~TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 858 GNTVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCEEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 45566688888655 669999999 8999999999999863
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-24 Score=274.88 Aligned_cols=108 Identities=21% Similarity=0.288 Sum_probs=93.4
Q ss_pred HHHHHHHHhCCccc-ccccccCcccccCChhhhhHHHHHHHHhcC---CceeEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 046196 300 VTDYVLKILGLEVC-ADTMVGDEMLRGISGGQRKRLTTGEMLVGP---ARALFMDEISTGLDSSTTYQIVNSLRQSIHIL 375 (1436)
Q Consensus 300 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~---~~illLDEptsgLD~~t~~~i~~~l~~~~~~~ 375 (1436)
.++.+|+.+||... .+. .+..|||||||||+||++|+.+ |++|||||||+|||..+...+.+.|++++.
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-- 781 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-- 781 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--
Confidence 45678999999763 343 3456999999999999999996 799999999999999999999999999865
Q ss_pred CCeEEEEEecCchhHHHhcccEEEe------cCCeEEEecChhHHH
Q 046196 376 NGTAVISLLQPAPETYELFDDLILL------SDGQIVYQGPRENVL 415 (1436)
Q Consensus 376 ~~t~ii~i~q~~~~~~~~~D~iivL------~~G~iv~~G~~~~~~ 415 (1436)
.+.+|++++|+..++ ..||+|++| ++|+|++.|+++++.
T Consensus 782 ~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 782 AGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 356666789998887 889999999 799999999999874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-26 Score=275.53 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=142.1
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-E-EEECCccCCCccccceEEEecCCCC---cCCCCCH
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSG-R-VTYNGHGMEEFVPQRTSAYISQNDL---HIGEMTV 245 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~~G~~~~~~~~~~~~~yv~Q~~~---~~~~lTV 245 (1436)
.++|+.+++|++++|+||||||||||+++|+|++.|+ +| + |.++|. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 4899999999999999999999999999999999887 89 9 999982 3567899999873 4556899
Q ss_pred HHHHHhhhhhc-CCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 246 RETLAFSARCQ-GVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 246 ~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
+||+ |+.... +... . ..+..+++.+||++..+ ..
T Consensus 200 ~eni-~~~~~~~~~~~-~------------------------------------~~~~~ll~~~gl~~~~~-------~~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL-L------------------------------------HNKQPMVKNFGLERINE-------NK 234 (460)
T ss_dssp TCTT-CSCBCBSSCCS-S------------------------------------CCBCCEECCCCSSSGGG-------CH
T ss_pred hhhh-cccccccCcch-H------------------------------------HHHHHHHHHhCCCcccc-------hh
Confidence 9999 764321 1000 0 00112355678876554 34
Q ss_pred cCChhhhhHHHHHHH--HhcCCce----eEEeC-CCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch------hHH
Q 046196 325 GISGGQRKRLTTGEM--LVGPARA----LFMDE-ISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP------ETY 391 (1436)
Q Consensus 325 ~LSGGqkqRvsia~a--l~~~~~i----llLDE-ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~------~~~ 391 (1436)
.|||||||||++|++ |+.+|++ ||||| ||++||.. ...+.+.+++ .+.++|+ ++|+.. ++.
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tvii-Vth~~~~~l~~~~~~ 308 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIML-VLCSETDPLWEKVKK 308 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEE-EECCSSCTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEE-EEccCchhhhHHHHH
Confidence 699999999999999 9999999 99999 99999999 4445554443 3455555 445444 666
Q ss_pred Hhccc-----EEEec-CCeEEEecChhHHH
Q 046196 392 ELFDD-----LILLS-DGQIVYQGPRENVL 415 (1436)
Q Consensus 392 ~~~D~-----iivL~-~G~iv~~G~~~~~~ 415 (1436)
.++|+ |++|+ +|+++ .|+++++.
T Consensus 309 ~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 309 TFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred HhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 89999 99999 99999 99987764
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-26 Score=277.32 Aligned_cols=197 Identities=15% Similarity=0.074 Sum_probs=149.3
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE-E-EEECCccCCcccccceEEEeecCCC---CCCCCcH
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG-S-ITISGYPKNQETFARISGYCEQTDI---HSPHVTV 941 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~q~~~---~~~~lTv 941 (1436)
+.++|+.+++|++++|+||||||||||+++|+|... +.+| + |.+||. .++.++|++|+.. +.+.+||
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 457999999999999999999999999999999876 5789 8 999983 2456899999874 4556899
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCCc----ceee
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMD 1015 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~a--L~~~p~i----lllD 1015 (1436)
+|++ |........ .. .+.+.++++.+|+.+..+ ...|||||||||+|||+ |+.+|++ |+||
T Consensus 200 ~eni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLD 266 (460)
T 2npi_A 200 QLPT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVD 266 (460)
T ss_dssp TCTT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred hhhh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEe
Confidence 9988 643321111 00 112355677778876654 24799999999999999 9999999 9999
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC--H---HHHHhhCe-----EEEEecCcEEEEEcCCCcc----h
Q 046196 1016 E-PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFDAFDE-----LLLMKRGGEEIYVGPLGRH----C 1080 (1436)
Q Consensus 1016 E-PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~D~-----v~~l~~Gg~~~y~G~~~~~----~ 1080 (1436)
| ||++||+. ...+.+.++++ |.|+|+++|+.+ . .+...+|+ |++|++.|+++ .|+.... .
T Consensus 267 EpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~ 341 (460)
T 2npi_A 267 TPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQR 341 (460)
T ss_dssp CCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHH
T ss_pred CCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhH
Confidence 9 99999999 55666655543 789999999976 3 34578999 99998335666 7775321 1
Q ss_pred hHHHHHhhh
Q 046196 1081 SQLIKYFEG 1089 (1436)
Q Consensus 1081 ~~~~~yf~~ 1089 (1436)
..+.+||..
T Consensus 342 ~~i~~~f~g 350 (460)
T 2npi_A 342 TSIREYFYG 350 (460)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhCC
Confidence 245577754
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-23 Score=253.70 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=139.8
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCC------------------------------------CceeE
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYVSG 908 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~------------------------------------~~~~G 908 (1436)
.+|+++|+.+.+| +++|+|+|||||||||++|.+...+ ...+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 9999999999999999999654321 01268
Q ss_pred EEEECCccCCccc---c-cceEEEeecCCCCCCCCcHHHHHHHHHHhc-----------------------CCCCCC---
Q 046196 909 SITISGYPKNQET---F-ARISGYCEQTDIHSPHVTVYESLVYSAWLR-----------------------LPPEVD--- 958 (1436)
Q Consensus 909 ~i~i~g~~~~~~~---~-~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~-----------------------~~~~~~--- 958 (1436)
.+++||.+++... . ...+++++|++.+... +..+...|.-... ......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999999876422 2 2347999998766532 4444433321110 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---cccC---
Q 046196 959 -------------------------------SDTRKMFVEEVMELVELNPIR----------------EA---LVGL--- 985 (1436)
Q Consensus 959 -------------------------------~~~~~~~v~~vl~~l~l~~~~----------------~~---~~g~--- 985 (1436)
.......+++.++.+++.... +. ....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112334455555554310 00 0110
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhC
Q 046196 986 ---PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 1059 (1436)
Q Consensus 986 ---~~~~~-LSgGqrqRl~iA~aL~~~p--~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1059 (1436)
..++. ||||||||++||++|+.+| ++|+|||||+|||+.+...+.+.|++++ +|+|||+|||++ ++...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 00112 6999999999999999999 9999999999999999999999999997 589999999996 4568899
Q ss_pred eEEEE----ecCcEEEEE
Q 046196 1060 ELLLM----KRGGEEIYV 1073 (1436)
Q Consensus 1060 ~v~~l----~~Gg~~~y~ 1073 (1436)
++++| .+ |+++-.
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 65 565443
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=248.25 Aligned_cols=236 Identities=16% Similarity=0.128 Sum_probs=147.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-----------------------------------CCcc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD-----------------------------------LKFS 211 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~~ 211 (1436)
..+|+++|+.+++| +++|+|||||||||||++|.+..... ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 34799999999999 99999999999999999997766421 0116
Q ss_pred eEEEECCccCCCcccc----ceEEEecCCCCcCCCCCHHHHHHhhhhhcCC-----CCchhhhhhhhHHHHHccCCCCC-
Q 046196 212 GRVTYNGHGMEEFVPQ----RTSAYISQNDLHIGEMTVRETLAFSARCQGV-----GPRYEVLQELSRREKAANIKPDP- 281 (1436)
Q Consensus 212 G~V~~~G~~~~~~~~~----~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~- 281 (1436)
|++.+||.+++..... ..+++++|++.++. .+..+...|--..... ...+....+..+..... .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 8899999887642221 23899999876543 3565555443211100 00000000000000000 00000
Q ss_pred ----------cHHHHH-----------HHhhhhhhhhhHHHHHHHHHhCCcccc----------------cc---cccC-
Q 046196 282 ----------DIDLIM-----------KAASLEGQEKNVVTDYVLKILGLEVCA----------------DT---MVGD- 320 (1436)
Q Consensus 282 ----------~~~~~~-----------~~~~~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 320 (1436)
..+... +............++..++.++++... +. .++.
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 000000 000000111223445567777776411 00 1111
Q ss_pred -----ccccc-CChhhhhHHHHHHHHhcCC--ceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHH
Q 046196 321 -----EMLRG-ISGGQRKRLTTGEMLVGPA--RALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYE 392 (1436)
Q Consensus 321 -----~~~~~-LSGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 392 (1436)
..++. |||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|+++.+ +.+|+.++|.. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~---~~~vi~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT---TSEEEEECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC---CCEEEEEeCcH-HHHh
Confidence 11222 6999999999999999999 99999999999999999999999999752 44555577875 6778
Q ss_pred hcccEEEe----cCCeEEEec
Q 046196 393 LFDDLILL----SDGQIVYQG 409 (1436)
Q Consensus 393 ~~D~iivL----~~G~iv~~G 409 (1436)
.||++++| ++|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-25 Score=240.53 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=100.4
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcH
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+++.+|+|| ++||+++|+||||||||||+++|+|. + +.+|+|............++.+||++|+.
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 345789996 89999999999999999999999998 6 56777632111111122456789999975
Q ss_pred HHHH-HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 046196 942 YESL-VYSA----WLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016 (1436)
Q Consensus 942 ~e~l-~~~~----~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDE 1016 (1436)
+||+ .+.. .+.. ... .+.++++++. + + |||||++|||+|+.+|++|+|||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4444 2210 1110 001 1124445543 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1017 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1017 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
||+| ++..+++.|+++ ++|+||| +||+++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 889999999998 6689999 999965
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-21 Score=226.17 Aligned_cols=81 Identities=22% Similarity=0.370 Sum_probs=74.3
Q ss_pred CCCCCHHHHHHHHHHHHHh------hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeE
Q 046196 988 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|+++ ....+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999964 47789999
Q ss_pred EEEecCcEEE
Q 046196 1062 LLMKRGGEEI 1071 (1436)
Q Consensus 1062 ~~l~~Gg~~~ 1071 (1436)
++|++ |+++
T Consensus 355 ~~l~~-G~i~ 363 (365)
T 3qf7_A 355 LRITG-GVVV 363 (365)
T ss_dssp EEEET-TEEC
T ss_pred EEEEC-CEEE
Confidence 99996 6664
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-21 Score=224.47 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeE--
Q 046196 988 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL-- 1061 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~----~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v-- 1061 (1436)
+..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|||+|+|++. +.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 4579999999999999997 6889999999999999999999999999984 4889999999964 67789987
Q ss_pred EEEecCcEEEEEcCC
Q 046196 1062 LLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1062 ~~l~~Gg~~~y~G~~ 1076 (1436)
++|.+|+..+.....
T Consensus 294 v~~~~g~s~~~~~~~ 308 (322)
T 1e69_A 294 VTMVNGVSAIVPVEV 308 (322)
T ss_dssp EEESSSCEEEEECCC
T ss_pred EEEeCCEEEEEEEEc
Confidence 888877766666554
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-22 Score=211.19 Aligned_cols=143 Identities=14% Similarity=0.183 Sum_probs=100.2
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCC-CCCcHHHHHHH
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS-PHVTVYESLVY 947 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~-~~lTv~e~l~~ 947 (1436)
||||++++||+++|+||||||||||++++.+-.. .+++ . ...|+++|+.... ..-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 0 1225666653210 0001111111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH---
Q 046196 948 SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1024 (1436)
Q Consensus 948 ~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~--- 1024 (1436)
.. .+.....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 64 ----------------~~-~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YI-VSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HH-HHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HH-HHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11 1122233544444432 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1025 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1025 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
....+++.|+++.++|.|+|+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 568899999888777999999999964
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-23 Score=223.54 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=96.7
Q ss_pred CcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--CccccceEEEecCCCCcCCC
Q 046196 165 KPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGME--EFVPQRTSAYISQNDLHIGE 242 (1436)
Q Consensus 165 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~~~~~~~yv~Q~~~~~~~ 242 (1436)
.++++|+|| ++|++++|+|||||||||||++|+|. +|+ +|+|.. .++. ....++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~--~~~~~~~~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSR--IILTRPAVEAGEKLGFLPGTL----- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSE--EEEEECSCCTTCCCCSSCC-------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeee--EEecCCchhhhcceEEecCCH-----
Confidence 345689996 89999999999999999999999999 886 788732 1111 112245799999975
Q ss_pred CCHHHHH-HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 243 MTVRETL-AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 243 lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
+||+ .+..... + .+. .. . ....++.+++. |
T Consensus 76 ---~enl~~~~~~~~------~---~~~------~~-~-----------------~~~~~~~~l~~-g------------ 106 (208)
T 3b85_A 76 ---NEKIDPYLRPLH------D---ALR------DM-V-----------------EPEVIPKLMEA-G------------ 106 (208)
T ss_dssp -------CTTTHHHH------H---HHT------TT-S-----------------CTTHHHHHHHT-T------------
T ss_pred ---HHHHHHHHHHHH------H---HHH------Hh-c-----------------cHHHHHHHHHh-C------------
Confidence 6776 4431100 0 000 00 0 00112233332 2
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPET 390 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 390 (1436)
+ ||||||+|||||+.+|++|||||||+| ++..+.+.|+++ . .+++|+ ++|+..++
T Consensus 107 ----l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 ----I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp ----S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred ----C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 888899988876 2 356677 78876544
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=223.20 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=73.2
Q ss_pred cccccCChhhhhHHHHHHHHh------cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhc
Q 046196 321 EMLRGISGGQRKRLTTGEMLV------GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF 394 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 394 (1436)
+.+..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.. .+.+|+.++|+... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~--~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER--LNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG--SSSEEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCCEEEEEecchHH-HHhC
Confidence 456679999999999999999 79999999999999999999999999998754 35566667888765 7889
Q ss_pred ccEEEecCCeEEE
Q 046196 395 DDLILLSDGQIVY 407 (1436)
Q Consensus 395 D~iivL~~G~iv~ 407 (1436)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999975
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-23 Score=238.58 Aligned_cols=157 Identities=15% Similarity=0.205 Sum_probs=117.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~---------------~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL---------------SFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE---------------CGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE---------------EEecCcccccc-ccHH
Confidence 45899999999999999999999999999999999997 58883 46778776554 5888
Q ss_pred H-HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 247 E-TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 247 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
| ||.|+... .. .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------------~~-----------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------TH-----------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------------CH-----------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------------cH-----------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 88774210 00 011123332 454444 2 46
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||| |||++.+|+||| ||+||+.+...|.. + +| ..++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH-~~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HS-RVQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TT-TEEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hC-CHHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999887752 1 23 23345689999 9999999
Q ss_pred EEecChhHHHHHHHh
Q 046196 406 VYQGPRENVLEFFER 420 (1436)
Q Consensus 406 v~~G~~~~~~~~f~~ 420 (1436)
++.|+++++..+|.+
T Consensus 256 v~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 256 PFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHH
Confidence 999999999666654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-23 Score=245.95 Aligned_cols=171 Identities=14% Similarity=0.162 Sum_probs=135.1
Q ss_pred ccccccceEEEeCCe--------------------EEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCccccc
Q 046196 864 LEFLKGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFA 923 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge--------------------~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 923 (1436)
+.+|++||+++++|+ ++||+||||||||||+|+|+|..+ +.+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 458999999999999 999999999999999999999887 56899999987643
Q ss_pred ceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHH
Q 046196 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE--QRKRLTI 1001 (1436)
Q Consensus 924 ~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG--qrqRl~i 1001 (1436)
+ .+|++|++ .++++|+.|++.+.. + +..+++.++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899975 577899999875431 1 11257889999987653322 28999 9999999
Q ss_pred HHHHhh----------CCCcceeeCCCCCCCHHHHHHHHHHHHHHH-----hC----CCEEEEEecCCCH-HHHHhhCeE
Q 046196 1002 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DT----GRTVVCTIHQPSI-DIFDAFDEL 1061 (1436)
Q Consensus 1002 A~aL~~----------~p~illlDEPTsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~~D~v 1061 (1436)
|++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+. ++-+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 22 2678899998652 255556655
Q ss_pred E
Q 046196 1062 L 1062 (1436)
Q Consensus 1062 ~ 1062 (1436)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-20 Score=217.05 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=69.4
Q ss_pred cccCChhhhhHHHHHHHHh----cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE-
Q 046196 323 LRGISGGQRKRLTTGEMLV----GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL- 397 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i- 397 (1436)
+..||||||||++||++|+ .+|++|+|||||++||+.....+.+.++++. ++++++.++|. .++.+.+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~---~~~~vi~~tH~-~~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS---KHTQFIVITHN-KIVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT---TTSEEEEECCC-TTGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECC-HHHHhhCceEE
Confidence 4579999999999999997 6899999999999999999999999999863 24555657777 5678899986
Q ss_pred -EEecCCeE-EEecChhHH
Q 046196 398 -ILLSDGQI-VYQGPRENV 414 (1436)
Q Consensus 398 -ivL~~G~i-v~~G~~~~~ 414 (1436)
++|.+|+. +.....++.
T Consensus 293 ~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEEESSSCEEEEECCC---
T ss_pred EEEEeCCEEEEEEEEcchh
Confidence 78887754 444444443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-22 Score=236.59 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=132.2
Q ss_pred ceeeecceEEEeCCe--------------------EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc
Q 046196 167 LTILHDVSGIIKPQR--------------------LTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~ 226 (1436)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|.++|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 458999999999999 99999999999999999999999988 899999997653
Q ss_pred cceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHH
Q 046196 227 QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLK 306 (1436)
Q Consensus 227 ~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (1436)
+ .+|++|++ .++.+|+.||+.++.. + ..++.+++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHHH
Confidence 1 27899985 4778899888755410 0 01244677
Q ss_pred HhCCcccccccccCcccccCChh--hhhHHHHHHHHhc----------CCceeEEeCCCCCCChHHHHHHHHHHHHHHH-
Q 046196 307 ILGLEVCADTMVGDEMLRGISGG--QRKRLTTGEMLVG----------PARALFMDEISTGLDSSTTYQIVNSLRQSIH- 373 (1436)
Q Consensus 307 ~lgL~~~~dt~vg~~~~~~LSGG--qkqRvsia~al~~----------~~~illLDEptsgLD~~t~~~i~~~l~~~~~- 373 (1436)
.++|.+... . .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~~-~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYDF-F-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCSE-E-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccCC-e-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 788765421 1 22 9999 9999999999999 9999999999999999999999999998752
Q ss_pred ---hc---CCeEEEEEecCchh--HHHhcccEE
Q 046196 374 ---IL---NGTAVISLLQPAPE--TYELFDDLI 398 (1436)
Q Consensus 374 ---~~---~~t~ii~i~q~~~~--~~~~~D~ii 398 (1436)
.. ..++++...|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 13555545555554 777777763
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-23 Score=225.24 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=117.8
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHH
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
...+++| .++++||+++|+||||||||||+++|+|..+ .+.+.+.+.+.+... ..++.++|++|+...++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3457888 6999999999999999999999999999874 233333333322211 1235689999998777778887
Q ss_pred HHHHHHHHhcC---CCCCCHHHHHHHHHHH------HHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 046196 943 ESLVYSAWLRL---PPEVDSDTRKMFVEEV------MELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 943 e~l~~~~~l~~---~~~~~~~~~~~~v~~v------l~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ill 1013 (1436)
|++........ ....+.++.++.+++. ++.+++.+.++.. ++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 77632110000 0011233333444444 4444554444443 23566 8899999999
Q ss_pred eeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 1014 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 1014 lDEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
|||||+|+ |+..+..+++.++++.+ .|.|||+++|+++ ++...+|++++|.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999874 4899999999986 6888999999996544
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-20 Score=199.38 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=54.5
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChH----------------HHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSS----------------TTYQIVNSLRQSIHILNGTAVISLLQPAP 388 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~----------------t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 388 (1436)
..|||||||++||+++..+|++++|||||++||+. ...++.+.++++.+. +.+++.++|+..
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~--g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE--GFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH--TCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc--CCcEEEEeCCHH
Confidence 36999999999999999999999999999999999 558888888877543 455556788876
Q ss_pred hHH
Q 046196 389 ETY 391 (1436)
Q Consensus 389 ~~~ 391 (1436)
++.
T Consensus 161 ~~~ 163 (171)
T 4gp7_A 161 EVE 163 (171)
T ss_dssp HHH
T ss_pred Hhh
Confidence 664
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-20 Score=198.27 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPR 261 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~ 261 (1436)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 22333221 1111001245689999975 222222 10 00
Q ss_pred hhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHH--
Q 046196 262 YEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEM-- 339 (1436)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~a-- 339 (1436)
+... +..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhcc
Confidence 0000 0111 23345699999999999996
Q ss_pred ---HhcCCceeEEeC--CCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEe--cCchhHHHhcccEEEecCCeEEE
Q 046196 340 ---LVGPARALFMDE--ISTGLDSSTTYQIVNSLRQSIHILNGTAVISLL--QPAPETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 340 ---l~~~~~illLDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~--q~~~~~~~~~D~iivL~~G~iv~ 407 (1436)
++.+|++++||| ||++||+.....+.+.+++ .+.+++++.| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999988888865 2445666664 677888888887 5677665
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-20 Score=198.00 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=99.1
Q ss_pred EEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~ 955 (1436)
.++|+||||||||||+++|+|... |.++|.+.... ..++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-HhhcC--
Confidence 589999999999999999999763 22333322110 2345689999975 233332 1 11100
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCCcceeeC--CCCCCCHHHHHH
Q 046196 956 EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1028 (1436)
Q Consensus 956 ~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~a-----L~~~p~illlDE--PTsgLD~~~~~~ 1028 (1436)
. -.+..+.. +..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 65 --~----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --T----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --C----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --C----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0 00122222 34699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEec---CCCHHHHHhhCeEEEEecCcEEEEEc
Q 046196 1029 VMRTVRNTVDTGRTVVCTIH---QPSIDIFDAFDELLLMKRGGEEIYVG 1074 (1436)
Q Consensus 1029 i~~~l~~~~~~g~tvi~~~H---~~~~~~~~~~D~v~~l~~Gg~~~y~G 1074 (1436)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~ 161 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELT 161 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECC
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEec
Confidence 9988875 4678899986 432 45566776 346665533
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-20 Score=212.82 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=97.1
Q ss_pred EEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVD 958 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~ 958 (1436)
.++|+||||||||||+|+|+|... +.+|+|.++|.++.....++.++|++|++.+++.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 479999999999999999999876 5689999999887555556789999999999999999999988653321 111
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh
Q 046196 959 SDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038 (1436)
Q Consensus 959 ~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~ 1038 (1436)
. +.+.+.++ .+..+... ..||||||||++|||+++. ++||||||.|||+.. .+.++++.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 11223332 33344443 3699999999999999876 999999999999987 445566655
Q ss_pred CCCEEEEEecCC
Q 046196 1039 TGRTVVCTIHQP 1050 (1436)
Q Consensus 1039 ~g~tvi~~~H~~ 1050 (1436)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999974
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-19 Score=207.75 Aligned_cols=174 Identities=15% Similarity=0.154 Sum_probs=125.8
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---------ccceEEEecCCCC-c
Q 046196 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---------PQRTSAYISQNDL-H 239 (1436)
Q Consensus 170 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~~~-~ 239 (1436)
++++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.+..... .+..++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999887 899999998865421 1235899999987 8
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
.+.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~~----d--------------------------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY----D--------------------------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC----S--------------------------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-CC----c--------------------------------------chHHhcCCCCcchhHHH-
Confidence 8899999999876321 00 0 00234566665555444
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCc--eeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC---------ch
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPAR--ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP---------AP 388 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~ 388 (1436)
..|| |||++||+++..+|+ +|+|| ||+|||+.+.. +++.+..+.+.++ ++|. ..
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 4599 999999999999999 99999 99999998642 3333223444444 5662 12
Q ss_pred hHHHhcccEEEecCCeE
Q 046196 389 ETYELFDDLILLSDGQI 405 (1436)
Q Consensus 389 ~~~~~~D~iivL~~G~i 405 (1436)
......+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 23344567788888854
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-19 Score=208.46 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=119.8
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------cc--cceEEEeecCCC-CC
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------TF--ARISGYCEQTDI-HS 936 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~ 936 (1436)
++++|+.+++|++++|+||||||||||++.|+|... +.+|+|.++|.+.... .+ ++.++|++|++. .+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457889999999999999999999999999999876 4579999999876431 12 235899999988 88
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--ccee
Q 046196 937 PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1014 (1436)
Q Consensus 937 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~--illl 1014 (1436)
|.+|++|++.+... + ..+ ..+++.+|+.+..+... .+|| |||++||++|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~---~~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T---TCS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c---CCc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 89999999987542 1 111 13456677776666553 3688 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Q 046196 1015 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1049 (1436)
Q Consensus 1015 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1049 (1436)
| ||+|||+.+.. +++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCC
Confidence 9 99999987542 4444 348999999994
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=197.06 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=75.3
Q ss_pred Ccccc-cCChhhhhHHHHHHHHh---------cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 046196 320 DEMLR-GISGGQRKRLTTGEMLV---------GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE 389 (1436)
Q Consensus 320 ~~~~~-~LSGGqkqRvsia~al~---------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 389 (1436)
+..++ .+|||||||++||++|+ ++|+||||||||++||+..+..+++.++++ . .++|+++|. .+
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 45566 69999999999999999 899999999999999999999999999874 2 567777774 33
Q ss_pred HHHhcccEEEecCCeEEEecChhHH
Q 046196 390 TYELFDDLILLSDGQIVYQGPRENV 414 (1436)
Q Consensus 390 ~~~~~D~iivL~~G~iv~~G~~~~~ 414 (1436)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998865
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-19 Score=209.12 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=105.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-ccccceEEEeecCCCCCCCCcHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
+++++|+.+++|++++|+||||||||||+++|+|..+ +.+|.|.++|.+... ...++.++++.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 8999999999999999999999999999999999887 468999999864211 00112222221
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
+ |||+||++||++|..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 1025 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
.+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356677776543458999999986 677899999998753
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-21 Score=224.18 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=122.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++.+. +.+|+++|++|++|++++|+||||||||||+++|+|.. +|+|.
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~------- 155 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL------- 155 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE-------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE-------
Confidence 66778877652 24899999999999999999999999999999999975 47773
Q ss_pred cccccceEEEeecCCCCCCCCcHHH-HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 QETFARISGYCEQTDIHSPHVTVYE-SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~~~~~~~~gyv~q~~~~~~~lTv~e-~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
+|++|+..+++ .|++| |+.|.. ..+. .+.+.++.+ |.+..+ +..|||||||
T Consensus 156 --------~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQ 207 (305)
T 2v9p_A 156 --------SFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKH 207 (305)
T ss_dssp --------CGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSS
T ss_pred --------EEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHH
Confidence 45667666554 46776 665421 1111 234455543 332222 2479999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLG 1077 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~ 1077 (1436)
| ||||+++|+||+ ||+||+.+...+.. .+|+++ .+..+|+| +|++ |++++.|+.
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~- 261 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD- 261 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH-
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH-
Confidence 9 999999999999 99999999988762 178865 45789999 9985 789988875
Q ss_pred cchhHHHHHhhhC
Q 046196 1078 RHCSQLIKYFEGI 1090 (1436)
Q Consensus 1078 ~~~~~~~~yf~~~ 1090 (1436)
.++..+|..+
T Consensus 262 ---~el~~~y~~l 271 (305)
T 2v9p_A 262 ---ADWKSFFVRL 271 (305)
T ss_dssp ---HHHHHHHHHS
T ss_pred ---HHHHHHHHHH
Confidence 4455666554
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-19 Score=219.00 Aligned_cols=190 Identities=14% Similarity=0.085 Sum_probs=143.7
Q ss_pred hhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc---cCCCc--------
Q 046196 156 YLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH---GMEEF-------- 224 (1436)
Q Consensus 156 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~-------- 224 (1436)
..++...+....++|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++
T Consensus 134 ~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~ 209 (438)
T 2dpy_A 134 RTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPD 209 (438)
T ss_dssp SCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHH
T ss_pred EeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhcccc
Confidence 334444443345699999 999999999999999999999999999999988 899999998 45432
Q ss_pred cccceEEEecCC-CCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHH
Q 046196 225 VPQRTSAYISQN-DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDY 303 (1436)
Q Consensus 225 ~~~~~~~yv~Q~-~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1436)
..++.++|++|+ +..++.+||.+|+.+.++.... +. .+
T Consensus 210 ~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~--------------------- 248 (438)
T 2dpy_A 210 GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD--------------RG------QH--------------------- 248 (438)
T ss_dssp HHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CE---------------------
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CC---------------------
Confidence 124679999995 5667788999999886543110 00 00
Q ss_pred HHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHh--cCCe---
Q 046196 304 VLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI--LNGT--- 378 (1436)
Q Consensus 304 ~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~--~~~t--- 378 (1436)
.....| .+..+|||| |||+|| +.+|++ |+|||+.+...+.+.++++.+. .++.
T Consensus 249 ------v~~~ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~ 306 (438)
T 2dpy_A 249 ------VLLIMD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITA 306 (438)
T ss_dssp ------EEEEEE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEE
T ss_pred ------HHHHHH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccc
Confidence 000011 123599999 999999 888887 9999999999999999886431 1243
Q ss_pred --EEEEEecCchhHHHhcccEEEecCCeEEEecChhHH
Q 046196 379 --AVISLLQPAPETYELFDDLILLSDGQIVYQGPRENV 414 (1436)
Q Consensus 379 --~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~ 414 (1436)
+|+..+|+.. ...+|++++|.+|+++..|++.++
T Consensus 307 ~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 307 FYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp EEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred eeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 6666777776 678999999999999999988765
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-19 Score=202.38 Aligned_cols=147 Identities=13% Similarity=0.126 Sum_probs=88.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPR 261 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~ 261 (1436)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47899999999999999999999987 89999999887654445789999999999999999999998754321000
Q ss_pred hhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHh
Q 046196 262 YEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLV 341 (1436)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~ 341 (1436)
.+.+.+. +. ....+.. ...||||||||+++||+++
T Consensus 80 ---------------------~~~i~~~---------------~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 ---------------------WEPIEKY---------------IN----EQYEKFL-----KEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp ---------------------SHHHHHH---------------HH----HHHHHHH-----HHHSCTTCCSSCCCCSCCE
T ss_pred ---------------------HHHHHHH---------------HH----HHHHhhh-----HHhcCcccchhhhhheeee
Confidence 0000000 00 1111222 2359999999999999987
Q ss_pred cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCc
Q 046196 342 GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPA 387 (1436)
Q Consensus 342 ~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 387 (1436)
. +++||||+.|||+.. .+.++.+.. ..++|+ +.+..
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~--~~~vI~-Vi~K~ 150 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSK--VVNIIP-VIAKA 150 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHT--TSEEEE-EETTG
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHh--cCcEEE-EEecc
Confidence 5 999999999999987 334444433 245555 44443
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-21 Score=214.33 Aligned_cols=177 Identities=10% Similarity=-0.011 Sum_probs=108.2
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc----cccceEEEeecCCCCCCCCc
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE----TFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~~lT 940 (1436)
.-|+||||++++|++++|+||||||||||+++|+|.. + |+|.+ |.+.... ..++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 3699999999999999999999999999999999976 2 77888 7654211 12356789999866554332
Q ss_pred H-HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCCccee
Q 046196 941 V-YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIFM 1014 (1436)
Q Consensus 941 v-~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~i-----A~aL~~~p~illl 1014 (1436)
. .+++.+. .... ..... ....++++++..++. ..+ ..+|||||||++| +++++.+|++++|
T Consensus 85 ~~~~~l~~~-~~~~--~~~g~-~~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 85 KNEDFLEYD-NYAN--NFYGT-LKSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HTTCEEEEE-EETT--EEEEE-EHHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hccchhhhh-hccc--ccCCC-cHHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1 1111100 0000 00000 012356666654332 111 2589999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEecCCCHHHHHhhCeE
Q 046196 1015 DEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 1015 DEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
||||+++|..+...+.+.++++.+ .+.+.|++.|+++ +.+...|++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 999999999999999998887643 2344555555543 344444443
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-21 Score=210.04 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=96.9
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----cceEEEecCCCCcCCCCC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----QRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~~~~~~~lT 244 (1436)
-|+|||+++++|++++|+||||||||||+++|+|++ | |+|.+ |.+.....+ .+.++|++|++..++.++
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 699999999999999999999999999999999987 4 78888 776543222 346889999876554432
Q ss_pred H-HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 245 V-RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 245 V-~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
. .+++.++ ...+ ..|... ...++.+++...+ ..+.
T Consensus 85 ~~~~~l~~~-~~~~--~~~g~~--------------------------------~~~i~~~l~~~~~-----~il~---- 120 (218)
T 1z6g_A 85 KNEDFLEYD-NYAN--NFYGTL--------------------------------KSEYDKAKEQNKI-----CLFE---- 120 (218)
T ss_dssp HTTCEEEEE-EETT--EEEEEE--------------------------------HHHHHHHHHTTCE-----EEEE----
T ss_pred hccchhhhh-hccc--ccCCCc--------------------------------HHHHHHHHhCCCc-----EEEE----
Confidence 1 1111111 0000 000000 0012223332221 1221
Q ss_pred ccCChhhhhHHHH-----HHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHH
Q 046196 324 RGISGGQRKRLTT-----GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIH 373 (1436)
Q Consensus 324 ~~LSGGqkqRvsi-----a~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~ 373 (1436)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.+...
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3599999999999 8999999999999999999999999999998877543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-19 Score=207.98 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=120.6
Q ss_pred ccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------cc--cceEEEeecCCC-CCC
Q 046196 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------TF--ARISGYCEQTDI-HSP 937 (1436)
Q Consensus 868 ~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~-~~~ 937 (1436)
+++|+.+++|++++|+||||||||||++.|+|... +.+|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788899999999999999999999999999876 4579999999876431 12 235899999988 888
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--cceee
Q 046196 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1015 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~--illlD 1015 (1436)
..|++|++.+.... ..+ ..+++.+|+.+..+... .+|| |||++||++|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 99999999876421 111 12455677776666553 3688 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1049 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1049 (1436)
||+|||+.+.. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999988653 34443 48999999994
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-18 Score=203.59 Aligned_cols=173 Identities=15% Similarity=0.159 Sum_probs=126.2
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---------ccceEEEecCCCC-cC
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---------PQRTSAYISQNDL-HI 240 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~~~-~~ 240 (1436)
+++|+.+++|++++|+||||||||||++.|+|.+.++ +|+|.++|.++.... .+..++|++|++. ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 5688999999999999999999999999999999887 899999998875321 1235899999987 88
Q ss_pred CCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 046196 241 GEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD 320 (1436)
Q Consensus 241 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 320 (1436)
+.+||+|++.++... +. + ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~~----d--------------------------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY----D--------------------------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC----S--------------------------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-CC----H--------------------------------------HHHHHhcCCChhhhhHH--
Confidence 899999999886321 00 0 00234556665544433
Q ss_pred cccccCChhhhhHHHHHHHHhcCCc--eeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC---------chh
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPAR--ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP---------APE 389 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~~ 389 (1436)
..|| |||++||+++..+|+ +|+|| ||+|||+.+.. +++.+..+.+.|+ ++|. ..-
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 4599 999999999999999 99999 99999998653 2332223444444 6662 122
Q ss_pred HHHhcccEEEecCCeE
Q 046196 390 TYELFDDLILLSDGQI 405 (1436)
Q Consensus 390 ~~~~~D~iivL~~G~i 405 (1436)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 3345567777777753
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-19 Score=213.02 Aligned_cols=175 Identities=15% Similarity=0.093 Sum_probs=137.0
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc---cCCc--------ccccceEEEeec
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY---PKNQ--------ETFARISGYCEQ 931 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~q 931 (1436)
+..+|+++ +.+.+|++++|+||||||||||+++|+|..+ +..|.|.++|. +... ...++.++|++|
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 35699999 9999999999999999999999999999876 46899999998 3321 234577999999
Q ss_pred C-CCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 046196 932 T-DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS 1010 (1436)
Q Consensus 932 ~-~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ 1010 (1436)
+ +..++.+||.+++.+.+....... . ....+.|. ...||+|| ||++|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~~----------~------~v~~~ld~------l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDRG----------Q------HVLLIMDS------LTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTT----------C------EEEEEEEC------HHHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCC----------C------CHHHHHHh------HHHHHHHH-HHHHHH---hCCCc
Confidence 5 556678899999987654321000 0 00011121 24699999 999999 88998
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1011 IIFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1011 illlDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+ |+|||+.+...+.+.++++.+ + |+ ||++++||.+ ...+|++++|.+ |+++..|..
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 8 999999999999999999866 3 64 9999999987 356899999986 799888753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-20 Score=201.15 Aligned_cols=184 Identities=11% Similarity=0.062 Sum_probs=111.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.++|+| ..+++|++++|+||||||||||+++|+|.++. . .+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i--~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-L--HFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT-C--EECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc-e--EEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999852 2 3333232322211 1235689999998878888888
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHH------HHHhCCcccccccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYV------LKILGLEVCADTMVGD 320 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 320 (1436)
|++.+.....+....+.. .+.+ ....++.. ++.+|+.+.++..
T Consensus 83 ~~l~~~~~~~~n~~~~g~----~~~~------------------------~~~~~~~~~~~~~~l~~~gl~~~~~~~--- 131 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGT----LAQP------------------------VRAAAATGVPVLIEVDLAGARAIKKTM--- 131 (207)
T ss_dssp TCEEEEEEEGGGTEEEEE----EHHH------------------------HHHHHHHTCCEEEECCHHHHHHHHHHC---
T ss_pred CCceeehhhcCchhhcCC----cHHH------------------------HHHHHHcCCeEEEEeCHHHHHHHHHhc---
Confidence 887543211100000000 0000 00011111 2233333333322
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCC----ChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGL----DSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgL----D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
++.|| +|+.+|++++|||||+|+ |+..+..+.+.++++.+.. +.+++.++|+..++..++|+
T Consensus 132 --~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 132 --PEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQG-DFDKVVVNRRLESACAELVS 197 (207)
T ss_dssp --TTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGG-GSSEEEECSSHHHHHHHHHH
T ss_pred --CCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhc-cCcEEEECCCHHHHHHHHHH
Confidence 23466 889999999999999998 6778999999999886533 45556689999999999999
Q ss_pred EEEec
Q 046196 397 LILLS 401 (1436)
Q Consensus 397 iivL~ 401 (1436)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-17 Score=190.10 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=69.3
Q ss_pred CCCCCHHHHH------HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeE
Q 046196 988 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 988 ~~~LSgGqrq------Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||+++|++ ++.+.+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4679999999 67778888889999999999999999999999999999877789999999995 467889999
Q ss_pred EEEec
Q 046196 1062 LLMKR 1066 (1436)
Q Consensus 1062 ~~l~~ 1066 (1436)
++|..
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99963
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-18 Score=194.89 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=117.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE-EEEECCccCCcccccceEEEeecCCCCCCCCcHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG-SITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
..+|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.........+.+.++.+.. .+++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~----~~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRV----RLRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTC----CGGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCC----Chhhc
Confidence 358999999999999999999999999999999999764 2346 5654443333222222222232221 12333
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCCcceeeCCCC--
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS-- 1019 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq-rqRl~iA~aL~~~p~illlDEPTs-- 1019 (1436)
+++.... + +.++..+.++++++..++. +.+. ...+|.+| +||+. |+++..+|++|++||||+
T Consensus 96 ~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4443221 1 1122223334443322221 1111 13589999 66666 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCC-H--------------------HHHHhhCeEEEEecCc
Q 046196 1020 -G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 1020 -g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~~D~v~~l~~Gg 1068 (1436)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...+|+|++|.+|.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 5 555 6778899999999765 999999999952 1 4667899999999753
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.9e-18 Score=197.07 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=100.4
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
+++++|+.+++|++++|+||||||||||+++|+|+++|+ +|.|+++|.+ +.. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------ccc------
Confidence 799999999999999999999999999999999999997 8999999853 110 000
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
.+ .. .+ .+ .+ |
T Consensus 215 ----~~-----~~----------------------------------------------i~-------~~-----~g--g 225 (330)
T 2pt7_A 215 ----HK-----NY----------------------------------------------TQ-------LF-----FG--G 225 (330)
T ss_dssp ----CS-----SE----------------------------------------------EE-------EE-----CB--T
T ss_pred ----ch-----hE----------------------------------------------EE-------EE-----eC--C
Confidence 00 00 00 00 01 8
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
||+||++||+||..+|++++|||||+. ++.+.|+.+. .+++++++++|... +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456666653 24444444555544 8889999999998854
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=188.70 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCe
Q 046196 990 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDE 1060 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~---------~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1060 (1436)
.||||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998873 799999994 3 2 7899
Q ss_pred EEEEecCcEEEEEcCC
Q 046196 1061 LLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1061 v~~l~~Gg~~~y~G~~ 1076 (1436)
+++|++ |+++..|+.
T Consensus 337 i~~l~~-G~i~~~g~~ 351 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADE 351 (359)
T ss_dssp EEEEET-TEEEECCCT
T ss_pred EEEEEC-CEEEecCCH
Confidence 999986 789888876
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=199.51 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=70.7
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 988 VSGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 988 ~~~L-SgGqrqRl~iA~aL~~~p--~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. +...+|++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 899999999964 55679999999
Q ss_pred ecC
Q 046196 1065 KRG 1067 (1436)
Q Consensus 1065 ~~G 1067 (1436)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-18 Score=198.43 Aligned_cols=128 Identities=9% Similarity=0.009 Sum_probs=95.9
Q ss_pred cceE-EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHH
Q 046196 172 DVSG-IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 172 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
|+|. .+++|++++|+||||||||||+++|+|.++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 4444 37999999999999999999999999999875 342 358999999998888 9999986
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
+... .+.... .+ .......|+.++ ....++.+ ..+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 5321 111000 00 112334566666 33333333 4699999
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCCCCh
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTGLDS 358 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsgLD~ 358 (1436)
|||+++|++++.+|+|+|||||+..+|.
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-19 Score=206.95 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=95.2
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
+++|+++||+||||||||||+++|+|...+ ..| . +.++|++|++.+++. |++|++.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G------~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDH------H--------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STT------C--------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCC------C--------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 899999999999999999999999998653 222 1 347999999999888 999998542111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
..+.....+.+.+.++.++ .+..+.. +..|||||+||+++|++++.+|+||+||||++.+|+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1122222344677888877 4443333 246999999999999999999999999999999986
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=180.42 Aligned_cols=81 Identities=26% Similarity=0.347 Sum_probs=67.5
Q ss_pred cccccCChhhhh------HHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhc
Q 046196 321 EMLRGISGGQRK------RLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF 394 (1436)
Q Consensus 321 ~~~~~LSGGqkq------Rvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 394 (1436)
+.+..||||||| |+++|++++.+|++|+|||||+|||+.....+.+.|+++.. . +.+|+.++|+ .++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~-~~~vi~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-K-IPQVILVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-G-SSEEEEEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEECh-HHHHHhC
Confidence 345679999999 67788889999999999999999999999999999998754 2 3455657787 5688999
Q ss_pred ccEEEec--CCe
Q 046196 395 DDLILLS--DGQ 404 (1436)
Q Consensus 395 D~iivL~--~G~ 404 (1436)
|+|++|+ +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999985 554
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-16 Score=192.41 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=67.0
Q ss_pred cccC-ChhhhhHHHHHHHHhcCC--ceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 323 LRGI-SGGQRKRLTTGEMLVGPA--RALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 323 ~~~L-SGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+..| ||||||||+||++|+.+| ++|||||||+|||..++..|.+.|+++++ +.+|+.++|.. ++...||++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~---~~~vi~itH~~-~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLA-QIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH---HSEEEEECCCH-HHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCH-HHHHhCCEEEE
Confidence 4567 999999999999999999 99999999999999999999999999864 35566678875 46678999999
Q ss_pred ecCC
Q 046196 400 LSDG 403 (1436)
Q Consensus 400 L~~G 403 (1436)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-16 Score=184.16 Aligned_cols=185 Identities=12% Similarity=0.054 Sum_probs=111.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-EEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSG-RVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.+.+.+.......+.+.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999998775 56 66554432211000011111111110 011
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.+++..+ .+...+....++.+++..++. +. +....
T Consensus 95 ~~~l~~~--------------------------------------~~~~~~~~~~~~~~l~~~~l~------i~-~~~~~ 129 (296)
T 1cr0_A 95 SDSLKRE--------------------------------------IIENGKFDQWFDELFGNDTFH------LY-DSFAE 129 (296)
T ss_dssp CHHHHHH--------------------------------------HHHHTHHHHHHHHHHSSSCEE------EE-CCCCS
T ss_pred ccccccC--------------------------------------CCCHHHHHHHHHHHhccCCEE------EE-CCCCC
Confidence 1111110 000001111223333222221 11 11234
Q ss_pred CChhh-hhHHHHHHHHhcCCceeEEeCCCC---C---CCh-HHHHHHHHHHHHHHHhcCCeEEEEEecCc--h-------
Q 046196 326 ISGGQ-RKRLTTGEMLVGPARALFMDEIST---G---LDS-STTYQIVNSLRQSIHILNGTAVISLLQPA--P------- 388 (1436)
Q Consensus 326 LSGGq-kqRvsia~al~~~~~illLDEpts---g---LD~-~t~~~i~~~l~~~~~~~~~t~ii~i~q~~--~------- 388 (1436)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+.+.|+++++..+.+ |+.++|.. .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~-vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVV-LVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCE-EEEEEECC----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCe-EEEEEecCcccccccccc
Confidence 88888 67777 999999999999999999 5 455 66688999999988655544 55566764 3
Q ss_pred -------------hHHHhcccEEEecCCeE
Q 046196 389 -------------ETYELFDDLILLSDGQI 405 (1436)
Q Consensus 389 -------------~~~~~~D~iivL~~G~i 405 (1436)
.+...||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=157.39 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=69.8
Q ss_pred CCCCCHHHHHHHHHH------HHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeE
Q 046196 988 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA------~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
+..||||||||++|| ++|+.+|++++|||||+|||+.+...+.+.|+++.++|+|||+++|++ ++...+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 468999999999886 899999999999999999999999999999999877789999999996 456789999
Q ss_pred EEEe
Q 046196 1062 LLMK 1065 (1436)
Q Consensus 1062 ~~l~ 1065 (1436)
++|+
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-16 Score=179.01 Aligned_cols=132 Identities=19% Similarity=0.257 Sum_probs=98.1
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCce-eEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV-SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.++. |++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 3899999 99999999999999999999999999875 44 799999987642 222221000
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
. + + +.+++.. ..+ |++||++|..+|++|++|||| |+
T Consensus 75 -------v--~-----q----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------V--N-----Q----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------E--E-----E----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------e--e-----H----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 0 0 0 0112211 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 1024 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 1024 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
.+...+ ++. +..|.+|++++|+.+ ....+|+++.|..
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 886544 333 356999999999976 5678899988864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-17 Score=184.79 Aligned_cols=155 Identities=9% Similarity=-0.019 Sum_probs=98.0
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcH
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 941 (1436)
+++.+|+|+||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3456999999999999999999999999999999999854 222222 2356689999985 6678999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL 1021 (1436)
.|++.+...... ...+.....+.+.+.++.+ .+..+.. ...||+||+||+.+ ++++.+|+++++|||....
T Consensus 76 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYN-FDHPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCC-TTSGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCC-CCCcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876432211 0101111122234444433 2223333 34799999999988 5788899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 046196 1022 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 1049 (1436)
Q Consensus 1022 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1049 (1436)
|.. ++++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 764 2232 27899999996
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-16 Score=179.27 Aligned_cols=178 Identities=16% Similarity=0.099 Sum_probs=102.9
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
++++|+|+|+++++|++++|+||||||||||+++|+|.+ |.+.++ ...+.++|++|++ ++..+|+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 456999999999999999999999999999999999976 223233 1245689999986 6778999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.|++.+.......... .. .+.+ .....|+.+ .+..+.. ...
T Consensus 76 ~~~~~~~~~~~~~~~~----~~-------------~~~~---------------~~~~~L~~l--~~~~~~~-----~~~ 116 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHP----DA-------------FDND---------------LMHRTLKNI--VEGKTVE-----VPT 116 (245)
T ss_dssp HHHHHHHTTCCCTTSG----GG-------------BCHH---------------HHHHHHHHH--HTTCCEE-----ECC
T ss_pred hHhhhhhccCCCCCCc----cc-------------ccHH---------------HHHHHHHHH--HCCCCee-----ccc
Confidence 9998775432111000 00 0011 011122222 2333333 346
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHH-hcccEEEecCCe
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYE-LFDDLILLSDGQ 404 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~-~~D~iivL~~G~ 404 (1436)
+|+||+||+.+ ++++.+|++++||||....|.. +.++ . +.+|+..+|+.....+ +++++ ++|+
T Consensus 117 ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~-~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 117 YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---F-HLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---C-SEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---c-CeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 99999999988 5788899999999998877753 2221 2 3455555565444433 34444 6664
Q ss_pred EEEecChhHHHHHH
Q 046196 405 IVYQGPRENVLEFF 418 (1436)
Q Consensus 405 iv~~G~~~~~~~~f 418 (1436)
+.+++.+.+
T Consensus 181 -----~~e~~~~~~ 189 (245)
T 2jeo_A 181 -----DLEQILTQY 189 (245)
T ss_dssp -----CHHHHHHHH
T ss_pred -----CHHHHHHHH
Confidence 566666533
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=197.74 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=107.2
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHc--------CCCCCCceeEEEEECCccCCcccccceEEEeecCCC
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYVSGSITISGYPKNQETFARISGYCEQTDI 934 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~ 934 (1436)
...+++|+++.+++|++++|+|||||||||||++++ |... +.++.. ++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~~---------------~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESAE---------------VSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEEE---------------EECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--cccccc---------------chHH---HH
Confidence 346899999999999999999999999999999993 3221 111110 1110 10
Q ss_pred CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCcc
Q 046196 935 HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVEL--VANPSII 1012 (1436)
Q Consensus 935 ~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL--~~~p~il 1012 (1436)
+ +..+|+. +.. .+++|++++++..+|++| +.+|+++
T Consensus 708 i----------------------------------~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 I----------------------------------LARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp E----------------------------------EEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred H----------------------------------HHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 0 0111111 111 135888888888888888 8999999
Q ss_pred eeeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1013 FMDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1013 llDEPTsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
+|||||+|+|+.....+ +.+++.+.+ .|+|+|++||+. ++...+|++..+.+ |++.+.+..
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 99999999999988877 667777776 499999999995 46688999999986 688877654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-16 Score=185.50 Aligned_cols=175 Identities=15% Similarity=0.175 Sum_probs=122.1
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC----------cccccceEEEeecCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN----------QETFARISGYCEQTD 933 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~----------~~~~~~~~gyv~q~~ 933 (1436)
..+|+++ +.|.+||+++|+||||||||||+++|+|... +..|.|.+.|.+.. ...+++.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4699999 9999999999999999999999999999877 45899999886421 112345567777654
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 046196 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 934 ~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~ill 1013 (1436)
. ...+.+.-.. ... ...+.....+ .++... . ..+..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~-----------~~~-~~ae~~~~~~-~~vl~~-l--d~~~~lS~g~-r~v~la---l~~p~~-- 188 (347)
T 2obl_A 136 R-----PALERMKAAF-----------TAT-TIAEYFRDQG-KNVLLM-M--DSVTRYARAA-RDVGLA---SGEPDV-- 188 (347)
T ss_dssp S-----CHHHHHHHHH-----------HHH-HHHHHHHTTT-CEEEEE-E--ETHHHHHHHH-HHHHHH---TTCCCC--
T ss_pred C-----CHHHHHHHHH-----------HHH-HHHHHHHhcc-ccHHHH-H--hhHHHHHHHH-HHHHHH---cCCCCc--
Confidence 2 2222221000 000 0011111111 011000 0 1134699999 899999 688887
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|+|||+.....+.+.++++.+ .|. ||++++||.+ ...+|++++|.+ |+++..|+.
T Consensus 189 ----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999874 477 8999999987 356899999986 799988754
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-16 Score=187.82 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=124.3
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc----------cccceEEEecC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF----------VPQRTSAYISQ 235 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------~~~~~~~yv~Q 235 (1436)
...+|+++ +.|.+|++++|+||||||||||+++|+|...|+ .|.|.+.|++..+. ..++.+.+++|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999988 89999988652211 11245667776
Q ss_pred CCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc
Q 046196 236 NDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD 315 (1436)
Q Consensus 236 ~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 315 (1436)
.+. +..+.+.-... +.. ..++ ....| .|
T Consensus 134 ~~~-----~~~~r~~~~~~----------------------------------~~~--------~ae~-~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFT----------------------------------ATT--------IAEY-FRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHH----------------------------------HHH--------HHHH-HHTTT----CE
T ss_pred CCC-----CHHHHHHHHHH----------------------------------HHH--------HHHH-HHhcc----cc
Confidence 532 22222211000 000 0000 00001 01
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCe-----EEEEEecCchhH
Q 046196 316 TMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGT-----AVISLLQPAPET 390 (1436)
Q Consensus 316 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t-----~ii~i~q~~~~~ 390 (1436)
..+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.+++.....+++ +|++.+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 000002244699999 899999 578776 99999999999999998864312355 6666778776
Q ss_pred HHhcccEEEecCCeEEEecChhHH
Q 046196 391 YELFDDLILLSDGQIVYQGPRENV 414 (1436)
Q Consensus 391 ~~~~D~iivL~~G~iv~~G~~~~~ 414 (1436)
...+|++++|.+|+|+.+|+.+++
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 578999999999999999988765
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-16 Score=206.73 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=112.7
Q ss_pred ccccccceEEEeC-------CeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCC
Q 046196 864 LEFLKGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS 936 (1436)
Q Consensus 864 ~~iL~~vs~~i~~-------Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~ 936 (1436)
..+++|+++.+++ |++++|+|||||||||||+++ |... + .++..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HHTTTCCEESSEE--
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------HhheeEEeccCcC--
Confidence 4699999999987 999999999999999999999 8653 1 1222349999753
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 046196 937 PHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016 (1436)
Q Consensus 937 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDE 1016 (1436)
.+||.|++. .+. |+.+.... +.+.+|+|+++ +++|++++.+|++++|||
T Consensus 828 -~l~v~d~I~----~ri--------------------g~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 828 -RLTPIDRVF----TRL--------------------GASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -EECCCSBEE----EEC--------------------C--------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred -CCCHHHHHH----HHc--------------------CCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 456655542 011 11110000 12346777664 999999999999999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE--EEcC
Q 046196 1017 PTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI--YVGP 1075 (1436)
Q Consensus 1017 PTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~--y~G~ 1075 (1436)
||+|+|+.. ...++..|+.++++ |+++|++||+++ .+...+|++.++. |++. +.|+
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~ 936 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENE 936 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC----
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecC
Confidence 999999987 46678899998876 999999999965 3555689988875 6766 4454
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-15 Score=194.56 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=69.9
Q ss_pred ccCChhhhhHHHHHHHH--hcCCceeEEeCCCCCCChHHHHHH-HHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 324 RGISGGQRKRLTTGEML--VGPARALFMDEISTGLDSSTTYQI-VNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al--~~~~~illLDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ ...++.+.+.. +.+++.++|. .+..+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~-g~~vl~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKI-GAFCMFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTT-CCEEEEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEcCc-HHHHHHhccccee
Confidence 46899999998888888 899999999999999999998888 45556554323 4455556777 5677899999999
Q ss_pred cCCeEEEecChhHH
Q 046196 401 SDGQIVYQGPRENV 414 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~ 414 (1436)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999998877654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-16 Score=173.97 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=94.8
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCc-----eeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHH
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-----VSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLV 946 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~-----~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~ 946 (1436)
+.+++|++++|+||||||||||+++|+|.....+ ..|.+++++..... .+.++++.|...+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5899999999999999999999999998433211 24567777653210 1112233333222221 2222221
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH-HHHHHHHHHHHhh-------CCCcceeeCCC
Q 046196 947 YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 1018 (1436)
Q Consensus 947 ~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG-qrqRl~iA~aL~~-------~p~illlDEPT 1018 (1436)
+. ...+.+ +++++..+.+++. +|+++++||||
T Consensus 96 ----------------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 ----------------------------VA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp ----------------------------EE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred ----------------------------EE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 112333 3344566666665 89999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCCH---HHHHhhCeEEEEecC
Q 046196 1019 SGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1019 sgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~D~v~~l~~G 1067 (1436)
+++|+.. ...+++.|+++++ .|+|||+++|..+. .+...+|+++.|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9999841 2367777777764 49999999995431 256678999999874
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-15 Score=183.84 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=111.9
Q ss_pred eecc-eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 170 LHDV-SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 170 L~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
|+.+ ++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~ 327 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRN 327 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHH
Confidence 3443 6799999999999999999999999999987653 32 12344555431 022222
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
.. + .+ .+. +. +...|+....+. .+..|||
T Consensus 328 ~~---~-~g-----------------------~~~------------------~~-~~~~g~~~~~~~-----~p~~LS~ 356 (525)
T 1tf7_A 328 AY---S-WG-----------------------MDF------------------EE-MERQNLLKIVCA-----YPESAGL 356 (525)
T ss_dssp HH---T-TS-----------------------CCH------------------HH-HHHTTSEEECCC-----CGGGSCH
T ss_pred HH---H-cC-----------------------CCH------------------HH-HHhCCCEEEEEe-----ccccCCH
Confidence 10 0 00 000 00 123445444332 3456999
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChH-----HHHHHHHHHHHHHHhcCCeEEEEEecCc----------hhHHHh
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSS-----TTYQIVNSLRQSIHILNGTAVISLLQPA----------PETYEL 393 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~-----t~~~i~~~l~~~~~~~~~t~ii~i~q~~----------~~~~~~ 393 (1436)
||+||+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. . +.+++.++|.. ..+..+
T Consensus 357 g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~-g~tvilvsh~~~~~~~~~~~~~~l~~~ 433 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-E-EITGLFTNTSDQFMGAHSITDSHISTI 433 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-T-TCEEEEEEECSSSSCCCSSCSSCCTTT
T ss_pred HHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-C-CCEEEEEECcccccCcccccCccccee
Confidence 9999999999999999999999 99999999 88999998887754 3 44555566665 667789
Q ss_pred cccEEEecCCe
Q 046196 394 FDDLILLSDGQ 404 (1436)
Q Consensus 394 ~D~iivL~~G~ 404 (1436)
+|+|++|++|+
T Consensus 434 ~D~vi~L~~ge 444 (525)
T 1tf7_A 434 TDTIILLQYVE 444 (525)
T ss_dssp CSEEEEEEEEE
T ss_pred eeEEEEEEEEE
Confidence 99999999886
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-15 Score=190.79 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=98.2
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHH
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
++.+++|||+.+++|++++|+|||||||||||+++++.... ... |...... ...++. .+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~------g~~vpa~--~~~i~~---~d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQI------GSYVPAE--EATIGI---VDGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHH------TCCBSSS--EEEEEC---CSEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhc------Cccccch--hhhhhH---HHHHHHhCChH
Confidence 35699999999999999999999999999999999753210 000 1111000 001111 11122222211
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1022 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD 1022 (1436)
+++ .. +.+.+|+|++|++.|+++ +.+|++++|||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 00 124689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCCCHHHHHhhCeE
Q 046196 1023 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 1023 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
+.....+. .+++.+++ .|+|||++||+++ +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99988887 67777765 5999999999964 44555543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-15 Score=165.95 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=92.6
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC----CcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHH
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDL----KFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~----~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
+-+++|++++|+||||||||||+++|+|.+.+.. .-.|.|.+++.+.. ..+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654420 01346666664310 01223344443332222 4444433
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
+.. ..++++
T Consensus 96 ~~~-----------------------------------------------------------------------~~~~~~ 104 (231)
T 4a74_A 96 VAR-----------------------------------------------------------------------AFNSNH 104 (231)
T ss_dssp EEE-----------------------------------------------------------------------CCSHHH
T ss_pred EEe-----------------------------------------------------------------------cCChHH
Confidence 321 122222
Q ss_pred -hhHHHHHHHHh-------cCCceeEEeCCCCCCChHH------------HHHHHHHHHHHHHhcCCeEEEEEecCchh-
Q 046196 331 -RKRLTTGEMLV-------GPARALFMDEISTGLDSST------------TYQIVNSLRQSIHILNGTAVISLLQPAPE- 389 (1436)
Q Consensus 331 -kqRvsia~al~-------~~~~illLDEptsgLD~~t------------~~~i~~~l~~~~~~~~~t~ii~i~q~~~~- 389 (1436)
++++..++.++ .+|+++++||||+++|+.. ..++++.|+++++.. +.+|+.++|...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~-g~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-DIAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHC-CCeEEEEeecccCc
Confidence 22233333333 4899999999999999842 236778888776644 4556667884444
Q ss_pred ---HHHhcccEEEecCC
Q 046196 390 ---TYELFDDLILLSDG 403 (1436)
Q Consensus 390 ---~~~~~D~iivL~~G 403 (1436)
+...+|+++.|++|
T Consensus 184 g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 184 GHILAHSATLRVYLRKG 200 (231)
T ss_dssp ------CCSEEEEEEEC
T ss_pred chhhHhhceEEEEEEec
Confidence 88889999999875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-15 Score=168.77 Aligned_cols=133 Identities=16% Similarity=0.240 Sum_probs=94.6
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
++|+|+| +++|++++|+||||||||||+++|+|.++|+ .+|+|.++|.++. |++|+...
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~---------~~~~~~~~-------- 73 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE---------YVFKHKKS-------- 73 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC---------SCCCCSSS--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce---------eecCCcce--------
Confidence 3899999 9999999999999999999999999998763 1699999987642 33332110
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
+. .+ +.+|++. ..+
T Consensus 74 ---~v--~q-------------------------------------------------~~~gl~~-----------~~l- 87 (261)
T 2eyu_A 74 ---IV--NQ-------------------------------------------------REVGEDT-----------KSF- 87 (261)
T ss_dssp ---EE--EE-------------------------------------------------EEBTTTB-----------SCH-
T ss_pred ---ee--eH-------------------------------------------------HHhCCCH-----------HHH-
Confidence 00 00 0012210 112
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
|++||++|..+|+++++|||| |..+...+++ . +. . +.+|++++|... ....+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~-g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-T-GHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-T-TCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-c-CCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9888665443 2 22 2 445565667654 7789999988864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-17 Score=177.40 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=110.9
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCC--CCCcHHHHHHHHHHh
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS--PHVTVYESLVYSAWL 951 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~lTv~e~l~~~~~l 951 (1436)
.++|+++||+||||||||||+++|+|... + .++|++|++.++ +.+|+.++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~--~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG--E-------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG--G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC--C-------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 47899999999999999999999998753 1 368999988776 5689988865421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCCcceeeCCCCC-------
Q 046196 952 RLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1020 (1436)
Q Consensus 952 ~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq----rqRl~iA~aL~~~p~illlDEPTsg------- 1020 (1436)
..+. ....+.+.+.++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~----~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPD----AFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGG----GBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChh----hhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111 11123456777777776554432 34688886 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCEEEEEecCC
Q 046196 1021 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1050 (1436)
Q Consensus 1021 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1050 (1436)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45689999999973
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-16 Score=183.93 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=85.3
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCC-CCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCc
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 940 (1436)
+++.+++++++.| +|+|+||||||||++.|+|. .. +.+| |.++|.+.......+.+++++|.+.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 4567999999998 99999999999999999996 44 4578 8888876543222345789999888888899
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC-
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS- 1019 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs- 1019 (1436)
+.|+.-+...... .+.....++.+.+ ..+.. .+++|||||||+.+||+++ ++++||||+
T Consensus 80 v~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAINC-----RDCFKTIISYIDE------QFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHHH------HHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 9998876532210 0000111122211 12232 2469999999999988875 999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCC
Q 046196 1020 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1051 (1436)
Q Consensus 1020 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1051 (1436)
|||+... +.++++.+. +.++|++.||..
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 4999873 556666543 778899999854
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-16 Score=169.90 Aligned_cols=163 Identities=22% Similarity=0.241 Sum_probs=107.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-ccceEEEecCCCCcCCCCCHHHHHHhhhhhcCC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-PQRTSAYISQNDLHIGEMTVRETLAFSARCQGV 258 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~ 258 (1436)
|++++|+||||||||||+++|+|.++ + +| |.++|.+..+.. ..+.++|++|+.. . + ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~-~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--T-RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEETT--S--C-EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEecc--c--c-eehh---hcccc-
Confidence 78999999999999999999999987 6 79 999887764432 2467899998641 1 1 1111 00000
Q ss_pred CCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-cccccccCcccccCChhhhhHHH-H
Q 046196 259 GPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV-CADTMVGDEMLRGISGGQRKRLT-T 336 (1436)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvs-i 336 (1436)
+.++ ..+..+|.. ...+|||||+++. +
T Consensus 67 --------------------------------------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 67 --------------------------------------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVL 95 (189)
T ss_dssp --------------------------------------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTT
T ss_pred --------------------------------------------------cCCccccccccceE-EEcchHHHHHHHHHH
Confidence 0000 012244433 3359999999984 4
Q ss_pred HH---HHhcCCceeEEeC--CCCCCChHHHHHHHHHHHHHHHhcCCeEEE---EEecCchhHHHhcccEEEecCCeEEEe
Q 046196 337 GE---MLVGPARALFMDE--ISTGLDSSTTYQIVNSLRQSIHILNGTAVI---SLLQPAPETYELFDDLILLSDGQIVYQ 408 (1436)
Q Consensus 337 a~---al~~~~~illLDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii---~i~q~~~~~~~~~D~iivL~~G~iv~~ 408 (1436)
++ |+..+|++++||| |+..+|......+.+.+++ ..++|+ .++|+.+ ..+.|+|..+.+|+|+.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-----~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-----PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-----SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-----CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 8988998765555555442 334553 3336553 357788888899999874
Q ss_pred c--ChhHH
Q 046196 409 G--PRENV 414 (1436)
Q Consensus 409 G--~~~~~ 414 (1436)
. +++++
T Consensus 169 ~~~nr~~~ 176 (189)
T 2i3b_A 169 TKENRNHL 176 (189)
T ss_dssp CSSSGGGH
T ss_pred ChHhHHHH
Confidence 3 44444
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-15 Score=176.60 Aligned_cols=149 Identities=14% Similarity=0.131 Sum_probs=104.9
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------cc--cceEEEeecCCCCCCCCcHHHHHH
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------TF--ARISGYCEQTDIHSPHVTVYESLV 946 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~q~~~~~~~lTv~e~l~ 946 (1436)
+|++++|+||||||||||++.|+|... +.+|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 799999999999999999999999876 3579999999875321 11 235899999988888899999997
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHH
Q 046196 947 YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026 (1436)
Q Consensus 947 ~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~ 1026 (1436)
+..... .+ ..+++..|+.+..+.. ++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~~~----~d--------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARG----YD--------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHT----CS--------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCC----CC--------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 643110 00 0122223333322221 455669999999999999994433 4454444
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCC
Q 046196 1027 AIVMRTVRNTVDT-GRTVVCTIHQPS 1051 (1436)
Q Consensus 1027 ~~i~~~l~~~~~~-g~tvi~~~H~~~ 1051 (1436)
..+++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5566666766544 899999999743
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-15 Score=197.75 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=111.1
Q ss_pred ceeeecceEEEeC-------CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEE-EecCCCC
Q 046196 167 LTILHDVSGIIKP-------QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSA-YISQNDL 238 (1436)
Q Consensus 167 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~~~ 238 (1436)
..+++|+++.+++ |++++|+|||||||||||++| |.+.+. ..+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------------aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------------AQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------------------HTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------------------hheeEEeccCcC
Confidence 4689999999987 999999999999999999999 987431 1344 8998753
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMV 318 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 318 (1436)
.+||.|+|.. + +|+.+..+
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555421 0 01111000
Q ss_pred cCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHH-HHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 319 GDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTT-YQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 319 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~-~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
.+...+|+|+++ +++|++++.+|+++|||||++|+|+... ..+++.|+.+.+.. +.+++.++|....+...+|++
T Consensus 847 --~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 112346776664 9999999999999999999999999885 44677777775432 455666789888888889999
Q ss_pred EEecCCeEE--EecChhH
Q 046196 398 ILLSDGQIV--YQGPREN 413 (1436)
Q Consensus 398 ivL~~G~iv--~~G~~~~ 413 (1436)
.++ +|++. +.|+.++
T Consensus 923 ~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECED 939 (1022)
T ss_dssp SEE-EEEEEEC-------
T ss_pred eee-cCeEEEEEecCccc
Confidence 887 58887 5566543
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-15 Score=191.83 Aligned_cols=128 Identities=21% Similarity=0.153 Sum_probs=96.0
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
+.+++|+|+. |++++|+|||||||||||++|+|.... +..|.+. + . .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHHH
Confidence 4699999999 999999999999999999999996420 1234321 1 1 1234677765 445556555
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCCcceeeCC---C
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1018 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL--~~~p~illlDEP---T 1018 (1436)
++. .++|+|+++++.+|+++ +.+|++++|||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 431 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1019 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1019 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
++||..+. ..+.+.|++ .|+|+|++||+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 99999875 567777766 4899999999953
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-14 Score=145.10 Aligned_cols=83 Identities=23% Similarity=0.305 Sum_probs=69.5
Q ss_pred CcccccCChhhhhHHHHH------HHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh
Q 046196 320 DEMLRGISGGQRKRLTTG------EMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL 393 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia------~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 393 (1436)
++.+..||||||||++|| ++++.+|++++|||||+|||+.+...+.+.++++.. . +.+|+.++|+. +..+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-K-IPQVILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-G-SSEEEEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-c-CCEEEEEEChH-HHHHh
Confidence 445667999999999876 899999999999999999999999999999998754 2 44566677876 67889
Q ss_pred cccEEEe--cCCeE
Q 046196 394 FDDLILL--SDGQI 405 (1436)
Q Consensus 394 ~D~iivL--~~G~i 405 (1436)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 46643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-15 Score=168.11 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=101.2
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcC--CCCCHHHHHHhhhh
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHI--GEMTVRETLAFSAR 254 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~--~~lTV~E~l~f~~~ 254 (1436)
.++|++++|+||||||||||+++|+|.+.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998743 378999988765 56899988765321
Q ss_pred hcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh----
Q 046196 255 CQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ---- 330 (1436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 330 (1436)
..+ .. ........++.+++.+..+.. ...+|+||
T Consensus 61 ~~~---------~~----------------------------~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HPD---------AF----------------------------DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SGG---------GB----------------------------CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Chh---------hh----------------------------hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 000 00 011223345666666544433 34589996
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCC-------CChHHHHHHHHHHHHHHHhcCCeEE
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTG-------LDSSTTYQIVNSLRQSIHILNGTAV 380 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsg-------LD~~t~~~i~~~l~~~~~~~~~t~i 380 (1436)
+||+++|++++.+|+++++||||++ ||+.+..++.+.+++.....+.+++
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~ 155 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLE 155 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHH
Confidence 4789999999999999999999999 9999999999988875433344443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-15 Score=175.74 Aligned_cols=170 Identities=19% Similarity=0.176 Sum_probs=101.4
Q ss_pred eeeecc-eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCC-CcceE-EEECCccCCCccccceEEEecCCCCcCCC
Q 046196 168 TILHDV-SGIIKPQRLTLLLGPPSSGKTTLLLALAGKL--GKDL-KFSGR-VTYNGHGMEEFVPQRTSAYISQNDLHIGE 242 (1436)
Q Consensus 168 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~-~~~G~-V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~ 242 (1436)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|+. ...|+ |.+++.+.. ..+.+++++|...+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 356665 6899999999999999999999999999987 4430 11367 788886531 12345666666543333
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
++.||+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555555443110
Q ss_pred cccCChhhhhHHHHHHHHh-------cCCceeEEeCCCCCCChHH------------HHHHHHHHHHHHHhcCCeEEEEE
Q 046196 323 LRGISGGQRKRLTTGEMLV-------GPARALFMDEISTGLDSST------------TYQIVNSLRQSIHILNGTAVISL 383 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~-------~~~~illLDEptsgLD~~t------------~~~i~~~l~~~~~~~~~t~ii~i 383 (1436)
-|++|+|++.++++++ .+|+++++||||+++|+.. ..++++.|+++++.. +++|+.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~-~~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-DIAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHc-CcEEEEE
Confidence 0223333333333333 7899999999999999852 356666777776543 4556657
Q ss_pred ecCchhHHHhcccEEEecCCeEEEecChh
Q 046196 384 LQPAPETYELFDDLILLSDGQIVYQGPRE 412 (1436)
Q Consensus 384 ~q~~~~~~~~~D~iivL~~G~iv~~G~~~ 412 (1436)
+|...+....+++......|+++.++...
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~~~ 311 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSATL 311 (349)
T ss_dssp EECC---------------CCCCCTTCSE
T ss_pred cccccccccccCCccccCCcceEeecCcE
Confidence 77766555556667777788877666543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-15 Score=178.33 Aligned_cols=161 Identities=19% Similarity=0.118 Sum_probs=98.7
Q ss_pred ccccc-eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCcee----EE-EEECCccCCcccccceEEEeecCCCCCCCC
Q 046196 866 FLKGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVS----GS-ITISGYPKNQETFARISGYCEQTDIHSPHV 939 (1436)
Q Consensus 866 iL~~v-s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~----G~-i~i~g~~~~~~~~~~~~gyv~q~~~~~~~l 939 (1436)
.|+++ ++.+++|++++|+||||||||||++.|++.....+.+ |. |++++.+.. .++.+++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45665 5899999999999999999999999999865211223 67 888886531 12234445554333221
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCCcc
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV-------ANPSII 1012 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~-------~~p~il 1012 (1436)
++.||+.+. +. .-|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 333322110 00 01567788888888887 689999
Q ss_pred eeeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 1013 FMDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 1013 llDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
++||||+++|+.. ...+++.|+++++ .|+|||+|+|... ..-..++...... ||+.+
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l 305 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHIL 305 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCC
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceE
Confidence 9999999999862 3566666777665 4899999999864 3322344444444 34443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-14 Score=159.84 Aligned_cols=167 Identities=13% Similarity=0.157 Sum_probs=107.8
Q ss_pred ccccccceE-EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccc---eEEEeecCCCCCCCC
Q 046196 864 LEFLKGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFAR---ISGYCEQTDIHSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~-~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~q~~~~~~~l 939 (1436)
...|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+.+.......+ ..++.+|..... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 346888885 899999999999999999999999997643 23455555443322111100 011111110000 00
Q ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC--cceeeCC
Q 046196 940 TVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEP 1017 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~--illlDEP 1017 (1436)
.+ ++.....++ ... .....|.++.++...+.....+|+ ++++|||
T Consensus 86 ~~------------------------~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II------------------------IDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE------------------------EECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE------------------------EeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 000000000 000 012359999998888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCC-------HHHHHhhCeEEEEec
Q 046196 1018 TSGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFDAFDELLLMKR 1066 (1436)
Q Consensus 1018 TsgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~D~v~~l~~ 1066 (1436)
|+++ |+.....+++.|+++++ .|+|||+++|+.. ..+...+|++++|.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 9888 99999999999999864 5899999999972 236778999999986
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=165.59 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=64.2
Q ss_pred ccCChhhhhHHHHHHHHh----cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 324 RGISGGQRKRLTTGEMLV----GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
..||||||||++||++++ .+|+++|||||+++||+.....+.+.|+++.. .++++++++|+ .+....+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 359999999999999999 68999999999999999999999999988642 24555556776 577889999999
Q ss_pred ec
Q 046196 400 LS 401 (1436)
Q Consensus 400 L~ 401 (1436)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.4e-14 Score=181.28 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=60.2
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHH-HHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE-ec
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIV-NSLRQSIHILNGTAVISLLQPAPETYELFDDLIL-LS 401 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~-~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv-L~ 401 (1436)
..+|+|++|++.++++ +.+|+++|||||++|||+.....+. ..++.+.+.. +.+++.++|+. +..+++|+.-- +.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~-g~tvl~vTH~~-el~~l~~~~~~~v~ 810 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDV-KSLTLFVTHYP-PVCELEKNYSHQVG 810 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT-CCEEEEECSCG-GGGGHHHHTTTTEE
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc-CCeEEEEeCcH-HHHHHHhhcccceE
Confidence 4689999999999998 8999999999999999999998887 5666654433 45555567774 55577776431 34
Q ss_pred CCeEEE
Q 046196 402 DGQIVY 407 (1436)
Q Consensus 402 ~G~iv~ 407 (1436)
++++.+
T Consensus 811 n~~~~~ 816 (918)
T 3thx_B 811 NYHMGF 816 (918)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 455544
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-14 Score=186.06 Aligned_cols=154 Identities=12% Similarity=0.015 Sum_probs=102.8
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
+.+++|+++. ++|++++|+|||||||||||++|+|.... +. .|..+... ...++++.| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~----~q---~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM----AY---IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH----HT---TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH----Hh---cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 99999999999999999999999985321 00 12111111 123455544 344455555
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
++... .+.+|+|+++ +..+..++.+|++++|||||+|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 44210 1236766664 4445556899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 1024 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 1024 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
.....+ +..++.+.+ .|+++|++||+++ ....+|++..+.+ |++.+.
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~ 750 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDAL 750 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEE
Confidence 777665 778888877 4999999999965 4567887666654 455444
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-14 Score=185.25 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=99.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG-KDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. . .....+++++| ++..+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------p--a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------P--AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------S--SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------e--hhccceeeHHH---hhccCCH
Confidence 4689999999 99999999999999999999999863 33 45431 0 01234667666 3445555
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.||+. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55442 24
Q ss_pred CChhhhhHHHHHHHH--hcCCceeEEeCC---CCCCChHHH-HHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 326 ISGGQRKRLTTGEML--VGPARALFMDEI---STGLDSSTT-YQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 326 LSGGqkqRvsia~al--~~~~~illLDEp---tsgLD~~t~-~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+.+.|++ .+.+ ++.++|.. +..+++ .--
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~-vl~~TH~~-~l~~~~--~~~ 707 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAY-TLFATHYF-ELTALG--LPR 707 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCE-EEEECCCH-HHHTCC--CTT
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCE-EEEEeCCH-HHHHhh--hhc
Confidence 899999999999999 999999999999 999998875 568888775 2344 44467765 344444 112
Q ss_pred ecCCeEEEe
Q 046196 400 LSDGQIVYQ 408 (1436)
Q Consensus 400 L~~G~iv~~ 408 (1436)
+.++++...
T Consensus 708 v~n~~~~~~ 716 (765)
T 1ewq_A 708 LKNLHVAAR 716 (765)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEEEE
Confidence 334554443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-15 Score=171.37 Aligned_cols=156 Identities=12% Similarity=0.110 Sum_probs=79.5
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC-cCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK-LGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 244 (1436)
++.+++|+++.| +|+||||+|||||++.|.|. +.++ +| |.++|.++......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6666 78 8888876643222345789999887788899
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|.||..++..... ..++ ....+++.+. .+ ...+
T Consensus 80 v~Dt~g~~~~~~~-~e~~-----------------------------------~~l~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-RDCF-----------------------------------KTIISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC------------C-----------------------------------TTHHHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcCc-HHHH-----------------------------------HHHHHHHHHH------HH-----HHHH
Confidence 9999877532100 0000 0001111111 11 2345
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCC-CChHHHHHHHHHHHHHHHhcCCeEEEEEecCc
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTG-LDSSTTYQIVNSLRQSIHILNGTAVISLLQPA 387 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsg-LD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 387 (1436)
++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ..+.++|...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 69999999999988875 9999999985 999873 44555432 2244555455554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=158.09 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=102.8
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhc
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLR 952 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~ 952 (1436)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 589999999999999999999999997433 3444 23443211 2346777655422 11111211 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC--CCCHHHH---H
Q 046196 953 LPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 1027 (1436)
Q Consensus 953 ~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs--gLD~~~~---~ 1027 (1436)
..... ...+++++.+++.+..+.. +..||+||++++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 11121 2246677888877665443 457999998865 68889999999999999 9998544 7
Q ss_pred HHHHHHHHHH-hCCCEEEEEecCCC
Q 046196 1028 IVMRTVRNTV-DTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1028 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1051 (1436)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888888886 45999999999864
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-15 Score=188.02 Aligned_cols=165 Identities=17% Similarity=0.152 Sum_probs=109.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCC-CCCcceEEEECCccCCC------ccccceEEEecCCCCcCCCCCHHHHHHhhhhh
Q 046196 183 TLLLGPPSSGKTTLLLALAGKLGK-DLKFSGRVTYNGHGMEE------FVPQRTSAYISQNDLHIGEMTVRETLAFSARC 255 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~~G~~~~~------~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~ 255 (1436)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 5 8999999987521 12346789999999999999999999876432
Q ss_pred cCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHH
Q 046196 256 QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLT 335 (1436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 335 (1436)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0011 11222
Q ss_pred HHHHHhcCCceeEEeCC------CCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch----hHHHhc--------ccE
Q 046196 336 TGEMLVGPARALFMDEI------STGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP----ETYELF--------DDL 397 (1436)
Q Consensus 336 ia~al~~~~~illLDEp------tsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~----~~~~~~--------D~i 397 (1436)
++.+....|+++++||| |+|||+....++.+.++++.....+.+++.++|+.+ ++..++ ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222357999999999 999999999999999998755444556666676654 222332 237
Q ss_pred EEecCCeEEEecChhHHHH
Q 046196 398 ILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 398 ivL~~G~iv~~G~~~~~~~ 416 (1436)
+|+.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8888888888887665544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-14 Score=169.32 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=90.4
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCce-eEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV-SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
+|+++ ...+|++++|+|||||||||||++|+|... +. .|.|...+.+... ......+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIEF-VHESKKCLVNQREVHRD------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT-------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHHh-hhhccccceeeeeeccc-------
Confidence 55555 678999999999999999999999999765 23 4566544433321 11112233433321111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
.++..+ +||++|..+|++|++|||| |..
T Consensus 182 ---------------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e 209 (356)
T 3jvv_A 182 ---------------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLE 209 (356)
T ss_dssp ---------------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHH
T ss_pred ---------------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHH
Confidence 122222 9999999999999999999 666
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 1025 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+... +.+++.+|.||++|+|+.+. ...+||++.|..|
T Consensus 210 ~~~~----~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~ 246 (356)
T 3jvv_A 210 TIRL----ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHH----HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred HHHH----HHHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence 6444 34446679999999999873 3789999998653
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-14 Score=166.07 Aligned_cols=148 Identities=12% Similarity=0.080 Sum_probs=102.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---------cceEEEecCCCCcCCCCCHHHHH
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---------QRTSAYISQNDLHIGEMTVRETL 249 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~~~~~~~lTV~E~l 249 (1436)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... ++.++|++|+....+.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999987 8999999988753221 23589999998888889999999
Q ss_pred HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 046196 250 AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGG 329 (1436)
Q Consensus 250 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 329 (1436)
.++... +. + . .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~~-~~----d-----------~---------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY----D-----------L---------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHHH-TC----S-----------E---------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHhC-CC----C-----------E---------------------------EEecCCCCCCchH--------HHHHHH
Confidence 865211 00 0 0 0111223322111 124555
Q ss_pred hhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 046196 330 QRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP 386 (1436)
Q Consensus 330 qkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 386 (1436)
+|||++|||++..+|+.++| .||+.+..++++.++++.+..+.+.|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 68999999999999995554 566665566666676665444444444 6664
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-15 Score=162.00 Aligned_cols=160 Identities=21% Similarity=0.191 Sum_probs=102.1
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~ 955 (1436)
|++++|+||||||||||+++|+|..+ .+| |.++|.+..+ ...++.+||++|+. .... +++ +.+....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccccC
Confidence 78999999999999999999999764 368 8888876643 23467789999974 1111 111 1111100
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCCcceeeC--CCCCCCHHHHHHH
Q 046196 956 EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1029 (1436)
Q Consensus 956 ~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl-~iA~---aL~~~p~illlDE--PTsgLD~~~~~~i 1029 (1436)
+ ....+..+|.. ...+|+|||+++ ++++ |+..+|++|+||| ||..+|......+
T Consensus 69 --~-----------------~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 69 --P-----------------PGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp --C-----------------SSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred --C-----------------ccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 0 00011123322 246899999988 4444 5789999999999 8999998765555
Q ss_pred HHHHHHHHhCCCEEEE----EecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1030 MRTVRNTVDTGRTVVC----TIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1030 ~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
.+.++ ...++|+ ++|+.+ ....|+|..+. +|+++...+.
T Consensus 129 ~~~l~----~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~~ 171 (189)
T 2i3b_A 129 RQTLS----TPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTKE 171 (189)
T ss_dssp HHHHH----CSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCSS
T ss_pred HHHHh----CCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeChH
Confidence 55544 3445553 338864 13456666665 4677765543
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-14 Score=154.69 Aligned_cols=171 Identities=16% Similarity=0.100 Sum_probs=107.3
Q ss_pred ceeeecceE-EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSG-IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+. +|.|.+.+.+. +.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~----------------------~~ 63 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE----------------------SR 63 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS----------------------CH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc----------------------CH
Confidence 446888885 89999999999999999999999999887654 56666644221 11
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.+........ +... + +.... .... .+.....++ ...+ ...
T Consensus 64 ~~~~~~~~~~-~~~~--~---~~~~~--~~~~-----------------------~~~~~~~~~-----~~~~----~~~ 103 (235)
T 2w0m_A 64 DSIIRQAKQF-NWDF--E---EYIEK--KLII-----------------------IDALMKEKE-----DQWS----LVN 103 (235)
T ss_dssp HHHHHHHHHT-TCCC--G---GGBTT--TEEE-----------------------EECCC---------CTTB----CSS
T ss_pred HHHHHHHHHh-cchH--H---HHhhC--CEEE-----------------------EeccccccC-----ceee----ecC
Confidence 1111000000 0000 0 00000 0000 000000001 0000 123
Q ss_pred CChhhhhHHHHHHHHhcCCc--eeEEeCCCCCC--ChHHHHHHHHHHHHHHHhcCCeEEEEEecCc--------hhHHHh
Q 046196 326 ISGGQRKRLTTGEMLVGPAR--ALFMDEISTGL--DSSTTYQIVNSLRQSIHILNGTAVISLLQPA--------PETYEL 393 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~--illLDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~--------~~~~~~ 393 (1436)
.|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+++.++|.. +.+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhee
Confidence 58999988888877778999 99999999888 9999999999999987643 56666677877 558889
Q ss_pred cccEEEecCC
Q 046196 394 FDDLILLSDG 403 (1436)
Q Consensus 394 ~D~iivL~~G 403 (1436)
+|+|++|+..
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-14 Score=156.06 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=93.9
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC---CCceeEEEEECCc
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYVSGSITISGY 915 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~ 915 (1436)
++++|+++.+. ..+|++ +.+++|..++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 56777777653 136777 8899999999999999999999999999761 0134455433211
Q ss_pred cC--CcccccceEEEeecCCCCCCCCc---HHHHHHHHHHh-cC----------CCCCCHHHHHHHHHHHHHHcCCcccc
Q 046196 916 PK--NQETFARISGYCEQTDIHSPHVT---VYESLVYSAWL-RL----------PPEVDSDTRKMFVEEVMELVELNPIR 979 (1436)
Q Consensus 916 ~~--~~~~~~~~~gyv~q~~~~~~~lT---v~e~l~~~~~l-~~----------~~~~~~~~~~~~v~~vl~~l~l~~~~ 979 (1436)
-. ....+....|+..+. .+... .+..+...... +. ...... ....+.+.++..++..+
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~- 141 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVL- 141 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEE-
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeE-
Confidence 00 000000111111100 00000 11111111110 00 001111 11223445555555432
Q ss_pred cccccCCCCCCCCHHHHHH-HHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 046196 980 EALVGLPGVSGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1042 (1436)
Q Consensus 980 ~~~~g~~~~~~LSgGqrqR-l~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1042 (1436)
.+++. ...+|+||||| +..+++++.+|+++++|||||++|......+++.|.++..+|.|
T Consensus 142 --~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 142 --VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp --EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred --EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 11211 34589999999 89999999999999999999999999999999999988766544
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.35 E-value=6.9e-14 Score=177.16 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=92.9
Q ss_pred EEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC------cccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN------QETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
+||+|||||||||||++|+|...+ ..+|.|+++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998653 25899999998741 12456789999999999999999999976532210
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC------CCCCCHHHHH
Q 046196 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 1027 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP------TsgLD~~~~~ 1027 (1436)
... .++| ++++.++.+...+|+++++||| |+|||+....
T Consensus 127 ~~~--------------------------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GEG--------------------------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CSS--------------------------------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CCc--------------------------------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 0011 0111222222458999999999 9999999999
Q ss_pred HHHHHHHHHHhC--CCEEEEEecCCC
Q 046196 1028 IVMRTVRNTVDT--GRTVVCTIHQPS 1051 (1436)
Q Consensus 1028 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1051 (1436)
.+.++++++..+ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 668888999866
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-13 Score=174.75 Aligned_cols=156 Identities=12% Similarity=0.051 Sum_probs=100.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
..+++|+|+. ++|++++|+|||||||||||++|+|..... ..| ..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4589999999 999999999999999999999999974211 012 11111 0123455544 34455555
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
|++..+ ...+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 554321 1135
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHH-HHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQI-VNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|+|+++ ++.+...+.+|+++|||||++|+|+.....+ ...++.+.+.. +.+++.++|+. +...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~-g~~vl~~TH~~-el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI-KALTLFATHYF-ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT-CCEEEEECSCG-GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc-CCeEEEEeCCH-HHHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999999877775 56666665422 44555567776 45578999877888888
Q ss_pred EEec
Q 046196 406 VYQG 409 (1436)
Q Consensus 406 v~~G 409 (1436)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.9e-14 Score=168.16 Aligned_cols=164 Identities=12% Similarity=0.120 Sum_probs=94.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.+.++|+++.+ +++.+++|+||.| +|+|+||||||||+++|+|...+.+..|.+.+++.+
T Consensus 11 ~l~~~~l~~~y-------------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQV-------------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCT-------------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeE-------------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 36777776554 2356899999998 999999999999999999976421112222222211
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
....+.+++++|.+.+.+.+||.|++.+..... .... ...+.+.+ + ..++.+++|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~--------~~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------D--------SKFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------H--------HHHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------H--------HHHHHHHHH
Confidence 112345799999888888899999987754221 0000 11122211 1 125667788
Q ss_pred HHHHHHHHhhCCC---cceeeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 998 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 998 Rl~iA~aL~~~p~---illlDEPT-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
|+.|||+++.+|+ +|++|||| +|||+... +.++++.. +.+||+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 9999999999999 89999999 69998874 34455543 788888888643
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=147.17 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=97.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhh
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARC 255 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~ 255 (1436)
-+++|++++|+||||||||||++.+++.+. .|++ +.|.+.. ....+.|+..++.. ..+.+.+. ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---AL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HH
Confidence 489999999999999999999999998654 3555 3344321 12457787765531 01111110 00
Q ss_pred cCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHH
Q 046196 256 QGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLT 335 (1436)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 335 (1436)
+ ... .....+.+++.+++.+..+. .+..||+||++++
T Consensus 91 -g-------------------~~~-----------------~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 91 -G-------------------AHL-----------------SAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp -H-------------------TTS-----------------CHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred -H-------------------hhc-----------------ChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 0 000 00112345667777665443 3456999998876
Q ss_pred HHHHHhcCCceeEEeCCCC--CCChHHH---HHHHHHHHHHHHhcCCeEEEEEecCchh
Q 046196 336 TGEMLVGPARALFMDEIST--GLDSSTT---YQIVNSLRQSIHILNGTAVISLLQPAPE 389 (1436)
Q Consensus 336 ia~al~~~~~illLDEpts--gLD~~t~---~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 389 (1436)
++++.+|+++++||||+ ++|.... .++++.|+++++..+ .+|+.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g-~tvi~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcC-CEEEEEecCCCc
Confidence 57888999999999999 9998554 788888888875444 455556776544
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=135.52 Aligned_cols=75 Identities=11% Similarity=0.190 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEE
Q 046196 988 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL 1063 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~----~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1063 (1436)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. .....+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 45799999999999999974 4699999999999999999999999999865 57899999984 46789999986
Q ss_pred Ee
Q 046196 1064 MK 1065 (1436)
Q Consensus 1064 l~ 1065 (1436)
+.
T Consensus 139 v~ 140 (173)
T 3kta_B 139 VS 140 (173)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-15 Score=176.41 Aligned_cols=164 Identities=16% Similarity=0.065 Sum_probs=98.1
Q ss_pred eeecceEEEeC--CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcc----eEEEEC----CccCCCcccc--ceEEEecCC
Q 046196 169 ILHDVSGIIKP--QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFS----GRVTYN----GHGMEEFVPQ--RTSAYISQN 236 (1436)
Q Consensus 169 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~~----G~~~~~~~~~--~~~~yv~Q~ 236 (1436)
+.+.|++.|++ |+.++|+||||||||||+++|+|.++++ + |+|.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 45789999999 9999999999999999999999999886 6 776653 2221 00000 112222221
Q ss_pred CCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccc
Q 046196 237 DLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADT 316 (1436)
Q Consensus 237 ~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 316 (1436)
.. ....|++|||.|+ ..+..++
T Consensus 233 ~~-~~~~t~~~nl~~~---------------------------------------------------------~~~~~~~ 254 (365)
T 1lw7_A 233 YI-DYAVRHSHKIAFI---------------------------------------------------------DTDFITT 254 (365)
T ss_dssp HH-HHHHHHCSSEEEE---------------------------------------------------------SSCHHHH
T ss_pred HH-HHHHhccCCEEEE---------------------------------------------------------eCCchHH
Confidence 11 0011111111110 0000011
Q ss_pred cccCcccccCChhhhhHHHHHHHHh-cCCceeEEeC---CC------CCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 046196 317 MVGDEMLRGISGGQRKRLTTGEMLV-GPARALFMDE---IS------TGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP 386 (1436)
Q Consensus 317 ~vg~~~~~~LSGGqkqRvsia~al~-~~~~illLDE---pt------sgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 386 (1436)
....+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.+ ++.+.++
T Consensus 255 -----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~-ililde~ 328 (365)
T 1lw7_A 255 -----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVP-YIEIESP 328 (365)
T ss_dssp -----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCC-CEEEECS
T ss_pred -----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCC-EEEeCCC
Confidence 11236677788888888775 5899999999 65 5899999999999998865433344 4445665
Q ss_pred chhHHHhcccEEEec
Q 046196 387 APETYELFDDLILLS 401 (1436)
Q Consensus 387 ~~~~~~~~D~iivL~ 401 (1436)
.+..+++|.+.+++
T Consensus 329 -~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 -SYLDRYNQVKAVIE 342 (365)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 35666777665554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-13 Score=157.61 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=43.6
Q ss_pred HHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 335 TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 335 sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
+||++|..+|+++++|||+ |..+...+.+ .+. . +.++++++|..... +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~-G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-T-GHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-T-TCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-c-CCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 7666444433 332 2 44566667766655 889999999665
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-12 Score=143.18 Aligned_cols=154 Identities=19% Similarity=0.135 Sum_probs=99.8
Q ss_pred cccccce-EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 865 EFLKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 865 ~iL~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
..|+++. +.+++|++++|+||||||||||++.|++ .. ..+.++++..+ . .+. +
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~---~~~v~~i~~~~-----------------~----~~~-~ 60 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS---GKKVAYVDTEG-----------------G----FSP-E 60 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH---CSEEEEEESSC-----------------C----CCH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc---CCcEEEEECCC-----------------C----CCH-H
Confidence 4677776 4899999999999999999999999998 21 12334443321 1 111 1
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CCcceeeCCCCC
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSG 1020 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG--qrqRl~iA~aL~~~-p~illlDEPTsg 1020 (1436)
.+.-. ... ...+. +++++.+.+ ...|++ +++++..+++++.+ |+++++||||++
T Consensus 61 ~~~~~--~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 61 RLVQM--AET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHH--HHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHH--HHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11100 000 01111 122222211 123334 46788889999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHhC-CCEEEEEecCCCH------------HHHHhhCeEEEEecC
Q 046196 1021 LDARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1021 LD~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~D~v~~l~~G 1067 (1436)
+|+.. ...+++.|++++++ |+|||+++|.... .+...+|.+++|.+.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 24566667887654 8999999997541 356789999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-13 Score=148.65 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=98.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH----HHHHH
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV----RETLA 250 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV----~E~l~ 250 (1436)
-..++|++++|+||||||||||+++|+|.++|+ ..+|.|.+.+.+.... .++.++|++|++..++.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998762 3589999988765432 23457899997655554444 22222
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
+... +.|-.
T Consensus 89 ~~~~-----------------------------------------------------------------------~yg~~ 97 (219)
T 1s96_A 89 VFGN-----------------------------------------------------------------------YYGTS 97 (219)
T ss_dssp ETTE-----------------------------------------------------------------------EEEEE
T ss_pred HHhc-----------------------------------------------------------------------cCCCC
Confidence 2110 01111
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecC
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGP 410 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~ 410 (1436)
+++ .+.++..++++||| ||+.++.++.+.+. .+.+|+.++|+..++.+ |+ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 111 23334456999999 99999999988765 35667767777666544 53 7788 678
Q ss_pred hhHHHHHHH
Q 046196 411 RENVLEFFE 419 (1436)
Q Consensus 411 ~~~~~~~f~ 419 (1436)
.+++...+.
T Consensus 155 ~e~i~~rl~ 163 (219)
T 1s96_A 155 EEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888765443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-13 Score=159.56 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=110.3
Q ss_pred cccccccceEEEeCCeE--EEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCc
Q 046196 863 RLEFLKGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~--~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 940 (1436)
... |++||+++++|++ +||+||||||||||+++|+|..- .|... ... .....++.++|++|+..+++.+|
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~--~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THT--QPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCC--CccceEeeEEEEeecCccccccc
Confidence 345 9999999999999 99999999999999999999742 22211 110 11122456899999988888999
Q ss_pred HHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHHc-CCc----cccccc----cc--CCCCCCCCHHHHHHHHH
Q 046196 941 VYESLVYSAWLRLPPEVDSD--------TRKMFVEEVMELV-ELN----PIREAL----VG--LPGVSGLSTEQRKRLTI 1001 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~--------~~~~~v~~vl~~l-~l~----~~~~~~----~g--~~~~~~LSgGqrqRl~i 1001 (1436)
|.|++.|+.. .+.. ......++.++.. ++. ...|.. +. .+...+|+-.+ +.|
T Consensus 99 v~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 99 IVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp EEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred hhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 9999865421 1111 0122334445443 433 111221 11 12224677776 789
Q ss_pred HHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 046196 1002 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1049 (1436)
Q Consensus 1002 A~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1049 (1436)
+++|..+++|+++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999999986 77779999888764
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=128.51 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=69.6
Q ss_pred cccCChhhhhHHHHHHHHh----cCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 323 LRGISGGQRKRLTTGEMLV----GPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +++ +++++|+ ..+...+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEE
Confidence 4579999999999999996 56799999999999999999999999998743 344 4445665 46788999998
Q ss_pred Ee--cCCeE-EEecChhHHHH
Q 046196 399 LL--SDGQI-VYQGPRENVLE 416 (1436)
Q Consensus 399 vL--~~G~i-v~~G~~~~~~~ 416 (1436)
.+ .+|.. +.....++..+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEETTEEEEEECCHHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHHH
Confidence 66 46644 33445555443
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-15 Score=163.34 Aligned_cols=169 Identities=18% Similarity=0.204 Sum_probs=109.7
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPE 956 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~ 956 (1436)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...++++|.....+..|+++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999862 357899988654211 234667776544455688888876543211000
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC--CHHHHHHHHHHH------HHhhCCCcceeeCCCCCCCHHHHHH
Q 046196 957 VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1028 (1436)
Q Consensus 957 ~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L--SgGqrqRl~iA~------aL~~~p~illlDEPTsgLD~~~~~~ 1028 (1436)
. ..+++.+......+. .+.+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 1124 778888888888 9999999999994 899988888
Q ss_pred HHHHHHHHHhCCCEEEEEecC-CCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1029 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1029 i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
++.++++.+.+.+||.++|+ ++ ++.+.+|+|+ + .|+++..|+.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~ 179 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAG 179 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--H-CGGGSCC---
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--h-CCcEEEeecC
Confidence 88888876667899999998 75 5788899998 4 5788888875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-12 Score=156.03 Aligned_cols=130 Identities=20% Similarity=0.279 Sum_probs=96.8
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCce-eEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYV-SGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+... ..++.++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 678776 89999999999999999999999999765 34 7999777766532 2344567777741
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
+++. ...+ +.+|+++|..+|++|++|||| |+.
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 1124 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 1025 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
+... .++. +..|.+|++|+|..+ ..+.+||++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6443 3443 356899999999965 667788887664
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-13 Score=152.16 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=86.5
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcH----HHHHH
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTV----YESLV 946 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv----~e~l~ 946 (1436)
.-..++|++++|+||||||||||+++|+|..++....|.|.+++.+... ..++.++|++|+...++.+++ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3467899999999999999999999999987532378999999876532 223457899987654443333 22211
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHH
Q 046196 947 YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1026 (1436)
Q Consensus 947 ~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~ 1026 (1436)
+.. .. .+.| +++ +.+++..+++++|| ||+.++
T Consensus 89 ~~~-------------------------------~~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFG-------------------------------NY------YGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETT-------------------------------EE------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHh-------------------------------cc------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 100 00 0112 111 34455668999999 999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1027 AIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1027 ~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
..+.+.+. ++.||++++|+++
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHHcc----CCEEEEEECCCHH
Confidence 99998876 5899999999865
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-14 Score=154.21 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=107.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcCCC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVG 259 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~ 259 (1436)
|++++|+||||||||||+++|++ +. +|.|.++|.++... ...++++|.......+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 68999999999999999999997 33 68999998765332 234667776544556688888876532110
Q ss_pred CchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccC---cccccC--ChhhhhHH
Q 046196 260 PRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGD---EMLRGI--SGGQRKRL 334 (1436)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqkqRv 334 (1436)
. . +-....+...+. +..+.+ |+|++||+
T Consensus 71 ----------~--~-----------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 ----------L--A-----------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ----------H--T-----------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------h--c-----------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 0 000000000000 001224 89999998
Q ss_pred HHHH------HHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecC-chhHHHhcccEEEecCCeEEE
Q 046196 335 TTGE------MLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQP-APETYELFDDLILLSDGQIVY 407 (1436)
Q Consensus 335 sia~------al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~-~~~~~~~~D~iivL~~G~iv~ 407 (1436)
.++. ++..+++...+|+ +||+..... .+.++.+.. .+.+++..+|. ..++.+.+|+|+ ++|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~--~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI--DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC--CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC--CccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8888888888884 899988777 777776532 23445545666 778999999998 9999999
Q ss_pred ecChhHH
Q 046196 408 QGPRENV 414 (1436)
Q Consensus 408 ~G~~~~~ 414 (1436)
+|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9988755
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-12 Score=155.95 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=77.0
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++...+.+||
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 356899999998 99999999999999999999765311 2222222111 1112457899999888888999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.||+.|+..... . .... ...+++ + ..
T Consensus 93 ~Dt~g~~~~~~~-------------~---------~~~~--------------~i~~~i-~-----------------~~ 118 (418)
T 2qag_C 93 VDTPGFGDAVDN-------------S---------NCWQ--------------PVIDYI-D-----------------SK 118 (418)
T ss_dssp EECC---------------------------------CH--------------HHHHHH-H-----------------HH
T ss_pred eechhhhhhccc-------------h---------hhHH--------------HHHHHH-H-----------------HH
Confidence 999887632110 0 0000 001110 0 13
Q ss_pred CChhhhhHHHHHHHHhcCCc---eeEEeCCC-CCCChHH
Q 046196 326 ISGGQRKRLTTGEMLVGPAR---ALFMDEIS-TGLDSST 360 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~---illLDEpt-sgLD~~t 360 (1436)
++++.+||+.|||+++.+|+ ++++|||| .|||+..
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d 157 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD 157 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH
Confidence 66678889999999999999 99999999 6999877
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-12 Score=154.50 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=99.8
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC-cccccceEEEee-cCCCCCCCCcHHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN-QETFARISGYCE-QTDIHSPHVTVYE 943 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~-~~~~~~~~gyv~-q~~~~~~~lTv~e 943 (1436)
+++++|+.+++|++++|+||||||||||+++|+|..+ +.+|.|.++|...- ....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 4599999999999999999999999999999999887 46899999985421 122455678887 44321
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
+++++...|-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356667777777899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 1024 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1024 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
..+.+.++.+.....|++.++|..+ ....+||+..|..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2345566666544568899999965 56788999999875
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-14 Score=152.47 Aligned_cols=153 Identities=13% Similarity=0.008 Sum_probs=93.9
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-cccceEEEeecCCCCCCCCcHHHHHHHHHHh
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-TFARISGYCEQTDIHSPHVTVYESLVYSAWL 951 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l 951 (1436)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.+.... ...+.++|++|... +..||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 36799999999999999999999999973 368999998764211 11234577777543 457889988765432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHH
Q 046196 952 RLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1031 (1436)
Q Consensus 952 ~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~ 1031 (1436)
........ .++.+++..++...... +. .+..+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~~-----~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYFV-----ILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCEE-----EECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCeE-----EEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 10000000 00111111111111100 10 12359999999999999999999987 68887777777
Q ss_pred HHHHHHhCCCEEEEEe
Q 046196 1032 TVRNTVDTGRTVVCTI 1047 (1436)
Q Consensus 1032 ~l~~~~~~g~tvi~~~ 1047 (1436)
.++.+...+..+|.++
T Consensus 143 ~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVS 158 (191)
T ss_dssp HTTCCGGGGGGEEECT
T ss_pred HHhccCcccccEEECC
Confidence 7665533233344443
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-13 Score=144.14 Aligned_cols=138 Identities=20% Similarity=0.171 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc------cc-ceEE----EecCCCCcCCCCCHHHHH
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV------PQ-RTSA----YISQNDLHIGEMTVRETL 249 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~----yv~Q~~~~~~~lTV~E~l 249 (1436)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999999875333699999998865432 11 2355 788876544 000
Q ss_pred HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 046196 250 AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGG 329 (1436)
Q Consensus 250 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 329 (1436)
+ . .+. .+ ..+.+++. .|+ ..||.|++ +||||
T Consensus 77 -------~--~-----~~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S-----EEE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C-----HHH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C-----hhh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 000 00 01122333 134 57999997 59999
Q ss_pred hhhHHHHHHHHhcCCceeE-------EeCCCCC---CChHHHHHHHHHHHHHHH
Q 046196 330 QRKRLTTGEMLVGPARALF-------MDEISTG---LDSSTTYQIVNSLRQSIH 373 (1436)
Q Consensus 330 qkqRvsia~al~~~~~ill-------LDEptsg---LD~~t~~~i~~~l~~~~~ 373 (1436)
||||++|||+++++|++.- =|.|..+ +|......+.+.+.+...
T Consensus 108 q~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp CCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred CCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 9999999999999998742 2444322 334445667777665543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-12 Score=149.91 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=52.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-ccceEEEec-CCC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-PQRTSAYIS-QND 237 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~-Q~~ 237 (1436)
+++++|+.+++|++++|+||||||||||+++|+|+++|+ +|.|+++|..--... .++.++|++ |++
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC---
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcc
Confidence 349999999999999999999999999999999999997 899999985311111 234577887 543
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.21 E-value=8.6e-13 Score=137.75 Aligned_cols=78 Identities=17% Similarity=0.030 Sum_probs=66.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
..+++++|+++++|++++|+||||||||||+++|+|.+ |+ +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999999 76 899999998874321111 2799997777 89999
Q ss_pred HHHHh
Q 046196 247 ETLAF 251 (1436)
Q Consensus 247 E~l~f 251 (1436)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99964
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-14 Score=170.08 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=99.8
Q ss_pred eEEEEEccCCCChhHHHHhHcCCCCC------CceeEEEEECCccCCcc------------------cccceEEEe---e
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRKTG------GYVSGSITISGYPKNQE------------------TFARISGYC---E 930 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 930 (1436)
++++|+|+|||||||||+.|.|...+ .+..|+|.+||.++... .+.+.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999987521 14579999999775321 123345555 5
Q ss_pred cCCCCCCCCcHHHHHHHHHHhcCCCCC--CHH-HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 046196 931 QTDIHSPHVTVYESLVYSAWLRLPPEV--DSD-TRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVA 1007 (1436)
Q Consensus 931 q~~~~~~~lTv~e~l~~~~~l~~~~~~--~~~-~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~ 1007 (1436)
|+..+.++.++.|+..++......... ... .+...++.++..+++.+..+... ++|+|||||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 665555677777766432100000000 000 00000111222334444333332 589999999999999999
Q ss_pred CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1008 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1008 ~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99988 999 67888888874 5899999999864
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-11 Score=132.94 Aligned_cols=77 Identities=13% Similarity=-0.000 Sum_probs=56.6
Q ss_pred CChhh--hhHHHHHHHHhcC-CceeEEeCCCCCCChHH--------HHHHHHHHHHHHHhcCCeEEEEEecCch------
Q 046196 326 ISGGQ--RKRLTTGEMLVGP-ARALFMDEISTGLDSST--------TYQIVNSLRQSIHILNGTAVISLLQPAP------ 388 (1436)
Q Consensus 326 LSGGq--kqRvsia~al~~~-~~illLDEptsgLD~~t--------~~~i~~~l~~~~~~~~~t~ii~i~q~~~------ 388 (1436)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.+++ .++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi-~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVI-VINQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEE-EEECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEE-EEeeEEEcCCCCc
Confidence 55554 5678888899885 99999999999999743 24566668887765555555 4566543
Q ss_pred -------hHHHhcccEEEecCC
Q 046196 389 -------ETYELFDDLILLSDG 403 (1436)
Q Consensus 389 -------~~~~~~D~iivL~~G 403 (1436)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567889999999754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-12 Score=135.84 Aligned_cols=140 Identities=17% Similarity=0.105 Sum_probs=87.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHHHHHhhhh
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRETLAFSAR 254 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E~l~f~~~ 254 (1436)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++..... .+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 44 7999999976533211 234577777643 45789999876532
Q ss_pred hcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHH
Q 046196 255 CQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRL 334 (1436)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRv 334 (1436)
...... ... .-+. ++...+++...+ . +..+..+|+|++||+
T Consensus 78 ~~~~~~------------~~~--~~~~----------------------~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYAKEG------------YFV--ILDG----------------------VVRPDWLPAFTA--L-ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHHHTS------------CEE--EECS----------------------CCCTTTTHHHHT--T-CSCEEEEEEECCHHH
T ss_pred HHhccC------------CeE--EEec----------------------cCcHHHHHHHHh--c-CCCeEEEEecCCHHH
Confidence 110000 000 0000 000011111110 0 111235999999999
Q ss_pred HHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHH
Q 046196 335 TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLR 369 (1436)
Q Consensus 335 sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~ 369 (1436)
.++|++..+|+++ +|+.....+.+.++
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFA 145 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence 9999999999876 57776666655444
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-13 Score=155.37 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=97.5
Q ss_pred CCeEEEEEccCCCChhHHHHhHc---CCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhc
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLR 952 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~ 952 (1436)
++++++|+||||||||||+++|+ |... +..|+|.++|.+... .....+++++|+..+.+..++.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 9865 567888887755321 12233455667777788889999997643210
Q ss_pred CC-----CCCCHHHHHHHHHHHHHH--cC------------CcccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCCcc
Q 046196 953 LP-----PEVDSDTRKMFVEEVMEL--VE------------LNPIREALVGLPGVSGLSTEQRKRLTIAVEL-VANPSII 1012 (1436)
Q Consensus 953 ~~-----~~~~~~~~~~~v~~vl~~--l~------------l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL-~~~p~il 1012 (1436)
.. ....... ..++.+.+. ++ +..+.+.. +..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 00 0111111 112222211 11 11112222 346888 55 677 9999999
Q ss_pred eee----CCCCCCCHHHHHHHHHHHHHHHhC
Q 046196 1013 FMD----EPTSGLDARAAAIVMRTVRNTVDT 1039 (1436)
Q Consensus 1013 llD----EPTsgLD~~~~~~i~~~l~~~~~~ 1039 (1436)
+|| |||+|||..+...+.+.++++.++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999 999999999999999999987654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-12 Score=142.96 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=52.2
Q ss_pred HHHHhCCcccccccccCcccccCChhhhhH-HHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHH
Q 046196 304 VLKILGLEVCADTMVGDEMLRGISGGQRKR-LTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIH 373 (1436)
Q Consensus 304 ~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR-vsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~ 373 (1436)
.++..+++.. .++++ ...+|+||||| +..+++++.+|+.+++|||||++|.....++++.|.+...
T Consensus 132 ~~~~~~~~~~---~v~nK-~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 132 WAVDSNIAVL---VLLTK-ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHTTCCEE---EEEEC-GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHcCCCeE---EEEec-ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3455666532 12322 23599999999 8999999999999999999999999999999999988754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-13 Score=150.78 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---cCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhh-
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALA---GKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSAR- 254 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~- 254 (1436)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... .....+.++.|+...++..|+.|++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 988776 8888887754211 111234556677777888899999976432
Q ss_pred -------hcCCCCchhhhhhhhHHHHHcc-CCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 255 -------CQGVGPRYEVLQELSRREKAAN-IKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 255 -------~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
+.+.....+ ..+.... ..++--+ + + +.. .+..+ .... ++.+..|
T Consensus 102 ~~~~~~il~g~~~~~~------~~~~l~~~~~~~~vi--~-----L---~~~--~~~~l-----~r~~-----~r~~~~l 153 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLG------QAEALDKICEVDLVI--S-----L---NIP--FETLK-----DRLS-----RRWIHPP 153 (246)
T ss_dssp CTTSCEEEESCCCSHH------HHHHHHTTCCCCEEE--E-----E---ECC--HHHHH-----HHHH-----TEEEETT
T ss_pred cCCCeEEEECCCCCHH------HHHHHHhhcCCCEEE--E-----E---ECC--HHHHH-----HHHH-----cCCCcCC
Confidence 111110000 0000000 0000000 0 0 000 00000 0111 2334469
Q ss_pred ChhhhhHHHHHHHH-hcCCceeEEe----CCCCCCChHHHHHHHHHHHHHHH
Q 046196 327 SGGQRKRLTTGEML-VGPARALFMD----EISTGLDSSTTYQIVNSLRQSIH 373 (1436)
Q Consensus 327 SGGqkqRvsia~al-~~~~~illLD----EptsgLD~~t~~~i~~~l~~~~~ 373 (1436)
|| |+ +++ +.+|++++|| |||+|||..+...+.+.++++..
T Consensus 154 Sg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 154 SG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 99 66 677 9999999999 99999999999999999987654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-13 Score=162.99 Aligned_cols=163 Identities=12% Similarity=0.084 Sum_probs=98.1
Q ss_pred ccccceEEEeC--CeEEEEEccCCCChhHHHHhHcCCCCCCcee----EEEEEC----CccCC--cccccceEEEeecCC
Q 046196 866 FLKGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYVS----GSITIS----GYPKN--QETFARISGYCEQTD 933 (1436)
Q Consensus 866 iL~~vs~~i~~--Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~~--~~~~~~~~gyv~q~~ 933 (1436)
+.+.|++.|++ |++++|+||||||||||+++|+|... +.+ |+|.++ |.+.. ...+ +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 46789999999 99999999999999999999999876 456 666553 22110 0001 1122222211
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCCcc
Q 046196 934 IHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV-ANPSII 1012 (1436)
Q Consensus 934 ~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~-~~p~il 1012 (1436)
..+ ..|+.||+.+ ++ .+..+.. ...+|+|++||..+++++. .+|+++
T Consensus 234 ~~~-~~t~~~nl~~-------------------------~~-~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDY-AVRHSHKIAF-------------------------ID-TDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHH-HHHHCSSEEE-------------------------ES-SCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHH-HHhccCCEEE-------------------------Ee-CCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 100 0111111110 00 0001111 1135667788888888775 599999
Q ss_pred eeeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 1013 FMDE---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1013 llDE---PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
+||| |+ .++|+..+..+.+.|+++.+ .|.+||+++|. + .....+|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 68999999999999988754 48899999975 3 3444555555443
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-11 Score=147.35 Aligned_cols=131 Identities=18% Similarity=0.280 Sum_probs=92.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRET 248 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~ 248 (1436)
+|++++ +++|++++|+||||||||||+++|+|.++++ -+|+|.+.|.++. ...+..++|++|...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~---------- 191 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREV---------- 191 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEB----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeec----------
Confidence 678876 8999999999999999999999999998763 1699987776543 223344566666310
Q ss_pred HHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCCh
Q 046196 249 LAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISG 328 (1436)
Q Consensus 249 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 328 (1436)
|++ ...+
T Consensus 192 ------------------------------------------------------------g~~-----------~~~~-- 198 (372)
T 2ewv_A 192 ------------------------------------------------------------GED-----------TKSF-- 198 (372)
T ss_dssp ------------------------------------------------------------TTT-----------BSCS--
T ss_pred ------------------------------------------------------------CCC-----------HHHH--
Confidence 010 0123
Q ss_pred hhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 329 GQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 329 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
+.+|+++|..+|+++++|||+ |..+... .++. +. . +..+++.+|. .++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~-g~~vi~t~H~-~~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-T-GHLVFGTLHT-NTAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-T-TCEEEECCCC-CSHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-c-CCEEEEEECc-chHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3433 22 2 4455656665 45888899987764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-11 Score=135.05 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=88.1
Q ss_pred cccce-EEEeCCeEEEEEccCCCChhHHHHhHcCC--CCC---CceeEEEEECCccCCcccccceEEEeecCCCCCCCCc
Q 046196 867 LKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 867 L~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 940 (1436)
|+.+- +-+++|++++|+||||||||||++.|++. ..+ +...|.+++++.... .
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~ 71 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------R 71 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------C
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------C
Confidence 44433 67999999999999999999999999983 321 013567777765310 0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH-HHHHHHHh--hCCCcceeeCC
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKR-LTIAVELV--ANPSIIFMDEP 1017 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqR-l~iA~aL~--~~p~illlDEP 1017 (1436)
..+-......+ .... +++++.+.+ ....+..+... +.-+.+++ .+|+++++|||
T Consensus 72 ~~~~~~~~~~~----g~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 72 PERLLAVAERY----GLSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHT----TCCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHc----CCCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 00000000001 0111 112221110 01245554332 33333444 48999999999
Q ss_pred CCCCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCCCHH------------------HHHhhCeEEEEec
Q 046196 1018 TSGLDAR-------A-----AAIVMRTVRNTVDT-GRTVVCTIHQPSID------------------IFDAFDELLLMKR 1066 (1436)
Q Consensus 1018 TsgLD~~-------~-----~~~i~~~l~~~~~~-g~tvi~~~H~~~~~------------------~~~~~D~v~~l~~ 1066 (1436)
|+.+|+. + ...+++.|++++++ |+|||+++|..... +...+|.+++|.+
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 9999985 3 34556666666544 99999999964311 1126899999986
Q ss_pred C
Q 046196 1067 G 1067 (1436)
Q Consensus 1067 G 1067 (1436)
+
T Consensus 209 ~ 209 (243)
T 1n0w_A 209 G 209 (243)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-11 Score=140.16 Aligned_cols=78 Identities=26% Similarity=0.361 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCe
Q 046196 988 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDE 1060 (1436)
Q Consensus 988 ~~~LSgGqrqRl------~iA~aL~~~-p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1060 (1436)
+..||||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999988 567888999 99999999999999999999999999874 3579999999975 5678999
Q ss_pred EEEEecCc
Q 046196 1061 LLLMKRGG 1068 (1436)
Q Consensus 1061 v~~l~~Gg 1068 (1436)
+++|++.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998544
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-12 Score=133.18 Aligned_cols=79 Identities=22% Similarity=0.119 Sum_probs=65.7
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHH
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
++.+++++|+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++.... . ...+++|+..++ .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~-~-~~~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEY-N-IAGKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEE-E-ETTEEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeec-c-CCCcceeccccc-cCCcH
Confidence 346899999999999999999999999999999999987 3 5899999998864221 1 113789988777 89999
Q ss_pred HHHHH
Q 046196 943 ESLVY 947 (1436)
Q Consensus 943 e~l~~ 947 (1436)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-11 Score=142.16 Aligned_cols=122 Identities=17% Similarity=0.123 Sum_probs=85.1
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEEC-CccCCcccccceEEEeecCCCCCCCCcHHHHH
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITIS-GYPKNQETFARISGYCEQTDIHSPHVTVYESL 945 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l 945 (1436)
+++++.. .+|++++|+||||||||||+|+|+|... .+.+|+|.++ |.+.. ....+.+++++|+..++++.||+|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSS-CCCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccc-ccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh
Confidence 4455543 4899999999999999999999999875 1358999887 76543 23356789999998888888998841
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 046196 946 VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVEL 1005 (1436)
Q Consensus 946 ~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL 1005 (1436)
+ ...+.++..+.+.++++.+++.+..+.. ..++| ||+||++||+++
T Consensus 283 -----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 -----L---WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA 328 (358)
T ss_dssp -----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred -----h---cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence 1 1234455556678889999998877765 35799 999999999864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-12 Score=153.49 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=102.6
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------c--ccceEEEeecCCCCCC
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------T--FARISGYCEQTDIHSP 937 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~gyv~q~~~~~~ 937 (1436)
-+++|+.+++|++++|+|+||||||||+++|+|... +..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 467899999999999999999999999999999875 4579999987665321 1 2456899999988888
Q ss_pred CCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCC-cceee
Q 046196 938 HVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV-ANPS-IIFMD 1015 (1436)
Q Consensus 938 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~-~~p~-illlD 1015 (1436)
..|+++++.+...-. .+ --+++..|+.+... .+-..-+|++.+++++. ..|. +||..
T Consensus 361 ~~tV~e~l~~a~~~~----~D--------vVLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN----ID--------VLIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcC----CC--------EEEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 899999998764211 00 00112222221111 12223357888888764 4564 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEec
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 1048 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1048 (1436)
.||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 588886554 23344432 3789999999
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-11 Score=144.29 Aligned_cols=122 Identities=18% Similarity=0.088 Sum_probs=80.2
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCcceEEEEC-CccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG-KDLKFSGRVTYN-GHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~-G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 35666664 4899999999999999999999999998 76 8999987 755432 2345789999999889999999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
|+ +. .+. ...+ .....+++++.+|+.+..|... .++
T Consensus 280 e~---~l--~~l----------~~~e------------------------~~~~~~e~l~~~gl~~f~~~~~-----~~l 315 (358)
T 2rcn_A 280 EF---GL--WHL----------EPEQ------------------------ITQGFVEFHDYLGHCKYRDCKH-----DAD 315 (358)
T ss_dssp TC---CC--CCC----------CHHH------------------------HHHTSGGGGGGTTCSSSTTCCS-----SSC
T ss_pred Hh---hh--cCC----------CHHH------------------------HHHHHHHHHHHcCCchhcCCCc-----ccC
Confidence 84 21 110 0000 0011233567788877666554 469
Q ss_pred ChhhhhHHHHHHHH
Q 046196 327 SGGQRKRLTTGEML 340 (1436)
Q Consensus 327 SGGqkqRvsia~al 340 (1436)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-11 Score=146.24 Aligned_cols=174 Identities=16% Similarity=0.112 Sum_probs=102.6
Q ss_pred ceeeecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCC
Q 046196 167 LTILHDVSGIIKPQRL--TLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lT 244 (1436)
.+ |+|+|+.+++|++ ++|+||||||||||+++|+|.. +.|...... ......+.++|++|++.+++.+|
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----l~g~~~~~~---~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----FEGEPATHT---QPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----C-------C---CSSCEEEEEEEEEEC--CEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----ccCCcCCCC---CccceEeeEEEEeecCccccccc
Confidence 45 9999999999999 9999999999999999999984 123211100 01112346899999988888999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHh-CCcc----ccccc--
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL-GLEV----CADTM-- 317 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~----~~dt~-- 317 (1436)
|.||+.|+..... +.+. ..+.+ ......+..|... ++.. ..|+.
T Consensus 99 v~D~~~~g~~~~~---------~~~~-------------~~i~~-------~i~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQINK---------EDSY-------------KPIVE-------FIDAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CCH---------HHHS-------------HHHHH-------HHHHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhcccc---------chhh-------------hHHHH-------HHHHHHHHHHHHHHhhhhhhccccccccc
Confidence 9999988642110 0000 00000 0011122233332 4331 12222
Q ss_pred --cc--CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEE
Q 046196 318 --VG--DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVIS 382 (1436)
Q Consensus 318 --vg--~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~ 382 (1436)
+. ....++|+-.+ +.++++|..+++|+++|||+..|.......+.+.+++... ..+..|+.
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~ 214 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQ 214 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCC
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEe
Confidence 11 01113577666 7899999999999999999999999888888888886222 23444443
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-11 Score=141.80 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=83.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQG 257 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~ 257 (1436)
+++.+++|.||+|||||||.+.|++.+.+. | . ..+.+.+|+|++.+++ .++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 367899999999999999999999998652 2 0 0224556699998775 489999987631100
Q ss_pred CCCchhhhhhhhHHHHHccCCCCC-cHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccc------cccCcccccCChhh
Q 046196 258 VGPRYEVLQELSRREKAANIKPDP-DIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADT------MVGDEMLRGISGGQ 330 (1436)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~~~LSGGq 330 (1436)
.-.. .+ .|+. |.+. ....++.+.- ..+| .+. .+...+||||
T Consensus 92 l~~~-------------~g-~p~a~d~~~---------------l~~~l~~l~~--g~~t~~~~~v~~p-~y~~~~sgGq 139 (290)
T 1odf_A 92 LLQG-------------RG-LPGTHDMKL---------------LQEVLNTIFN--NNEHPDQDTVVLP-KYDKSQFKGE 139 (290)
T ss_dssp GGSS-------------SC-STTSBCHHH---------------HHHHHHHHTC--------CCEEEEC-CEETTHHHHT
T ss_pred hhhh-------------cc-CcchhHHHH---------------HHHHHHHhhc--cCccccCcceeec-cCccccCCcc
Confidence 0000 00 0111 1111 1223444422 2222 122 2335799999
Q ss_pred hhHHHHH--HHHhcCCceeEEeCCCCCCChHH
Q 046196 331 RKRLTTG--EMLVGPARALFMDEISTGLDSST 360 (1436)
Q Consensus 331 kqRvsia--~al~~~~~illLDEptsgLD~~t 360 (1436)
+||+.+| +++ +|+|+|+||+++++|+..
T Consensus 140 ~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 140 GDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999997 555 899999999999999864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-11 Score=132.17 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=34.1
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhc--CcCCCC--CcceEEEECCc
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAG--KLGKDL--KFSGRVTYNGH 219 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~--~~~G~V~~~G~ 219 (1436)
+-+++|++++|+||||||||||++.|++ .+++.. .-.|.+.+++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 6799999999999999999999999999 444310 01456666553
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-13 Score=157.95 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=93.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc--------CCCCCcceEEEECCccCCCccc------------------cceEEEe
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKL--------GKDLKFSGRVTYNGHGMEEFVP------------------QRTSAYI 233 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~~G~~~~~~~~------------------~~~~~yv 233 (1436)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 455 8999999987654321 1234555
Q ss_pred ---cCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCC
Q 046196 234 ---SQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGL 310 (1436)
Q Consensus 234 ---~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 310 (1436)
+|+....++.+|.||..++... .......... ..... ..++.++..+++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~------------~~~~~---------~~l~~~l~~vd~ 132 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHE------------VLCQR---------YLLDGVIALVDA 132 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSH------------HHHHH---------EEEEEEEEEEET
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCc------------cccCe---------EEECCEEEEEEH
Confidence 4554445566666666543110 0000000000 00000 000111223333
Q ss_pred cccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH
Q 046196 311 EVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPET 390 (1436)
Q Consensus 311 ~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 390 (1436)
.+..+.. .++|||||||+..+++++.+|+++ ||| ..+.+.++++. .+.+|+.++|...+.
T Consensus 133 ~~~~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~---~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 133 VHADEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN---ARAPVYTVTHGDIDL 192 (318)
T ss_dssp TTHHHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC---SSSCEEECCSSCCCG
T ss_pred HHHHHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC---CCCeEEEecccCCCH
Confidence 3333322 159999999998888888888877 888 67777777753 345555566654333
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.5e-11 Score=121.58 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=37.1
Q ss_pred hhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCCC
Q 046196 1006 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQPS 1051 (1436)
Q Consensus 1006 ~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~~ 1051 (1436)
+.+|++|++|||++ +|......+.+.+.++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6655588899999988877888 888999643
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.3e-13 Score=157.83 Aligned_cols=164 Identities=13% Similarity=0.177 Sum_probs=104.6
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------cccceEEEeecCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------TFARISGYCEQTDIHS 936 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~~~ 936 (1436)
..+|+++|+.+++|++++|+|+||||||||+++|+|... +.+|+|.+.|.+.... ..++.++|++|+...+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 458999999999999999999999999999999999765 4578999988765321 2345689999987766
Q ss_pred CCC------------cHHHHHHHHH-----------------------------HhcCCCCCCHHHHHHHHHHHHHHcCC
Q 046196 937 PHV------------TVYESLVYSA-----------------------------WLRLPPEVDSDTRKMFVEEVMELVEL 975 (1436)
Q Consensus 937 ~~l------------Tv~e~l~~~~-----------------------------~l~~~~~~~~~~~~~~v~~vl~~l~l 975 (1436)
+.. +++|.+...- .+..+. ..++.....+.+.+...+
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~i 197 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELADM 197 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCSE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccccE
Confidence 432 2233321100 000000 000000000011121111
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCCcceeeCCCCCCCHHHHHHHHHHHHHHH
Q 046196 976 NPIREALVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037 (1436)
Q Consensus 976 ~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~------~p~illlDEPTsgLD~~~~~~i~~~l~~~~ 1037 (1436)
.-+ ++. .......+|+|++|++..+++++. +|++++ ||++|......+++.|.++.
T Consensus 198 vvl-NK~-Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 198 IAV-NKA-DDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp EEE-ECC-STTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred EEE-Ech-hccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 100 111 000113479999999999999987 688876 99999999999999998864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-12 Score=137.69 Aligned_cols=139 Identities=13% Similarity=0.189 Sum_probs=84.0
Q ss_pred eEEEEEccCCCChhHHHHhHcCCCCC-CceeEEEEECCccCC------ccccc-ceEE----EeecCCCCCCCCcHHHHH
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRKTG-GYVSGSITISGYPKN------QETFA-RISG----YCEQTDIHSPHVTVYESL 945 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~------~~~~~-~~~g----yv~q~~~~~~~lTv~e~l 945 (1436)
++++|+|+||||||||++.|+|...+ +...|.|.+||.++. ...++ +.+| +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 57999999999999999999997652 123799999998732 12333 3456 778765543 111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHH-cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcc-------eeeCC
Q 046196 946 VYSAWLRLPPEVDSDTRKMFVEEVMEL-VELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1017 (1436)
Q Consensus 946 ~~~~~l~~~~~~~~~~~~~~v~~vl~~-l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~il-------llDEP 1017 (1436)
. +.+ ....+++.++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Chh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 011 01123455554 43 24666653 59999999999999999999874 23444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 046196 1018 TSG---LDARAAAIVMRTVRNTVDTGR 1041 (1436)
Q Consensus 1018 Tsg---LD~~~~~~i~~~l~~~~~~g~ 1041 (1436)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334455667777766555543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-11 Score=146.10 Aligned_cols=81 Identities=15% Similarity=0.079 Sum_probs=69.0
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc------c---ccceEEEecCCCCcC
Q 046196 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF------V---PQRTSAYISQNDLHI 240 (1436)
Q Consensus 170 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~---~~~~~~yv~Q~~~~~ 240 (1436)
-+++|+.+++|++++|+|+||||||||++.|+|++.++ +|+|.++|.+.... . .++.++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 47899999999999999999999999999999999876 89999987665321 1 134689999998878
Q ss_pred CCCCHHHHHHhhh
Q 046196 241 GEMTVRETLAFSA 253 (1436)
Q Consensus 241 ~~lTV~E~l~f~~ 253 (1436)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999874
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-12 Score=147.89 Aligned_cols=181 Identities=13% Similarity=0.061 Sum_probs=108.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-------ccceEEEecCCCCcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-------PQRTSAYISQNDLHI 240 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~~~~~ 240 (1436)
.+|+++|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+.|.+..... .++.++|++|++..+
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 4899999999999999999999999999999999999887 899999998764321 235689999987776
Q ss_pred CCC------------CHHHHHHhh----hhh---cCCCCchhhhhhhhHHHHHccC---CCCCc-HHHHHHHhhhhhhhh
Q 046196 241 GEM------------TVRETLAFS----ARC---QGVGPRYEVLQELSRREKAANI---KPDPD-IDLIMKAASLEGQEK 297 (1436)
Q Consensus 241 ~~l------------TV~E~l~f~----~~~---~~~~~~~~~~~~~~~~~~~~~i---~~~~~-~~~~~~~~~~~~~~~ 297 (1436)
... +++|.+... ..+ +.+|-+.. +. .....+.. .-+.. .+.. +. +
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~~~~~-~~--i----- 187 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGAGDEL-QG--I----- 187 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC---------C-----
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCCcccH-HH--H-----
Confidence 532 233333110 000 01111000 00 00000000 00000 0000 00 0
Q ss_pred hHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhc------CCceeEEeCCCCCCChHHHHHHHHHHHHH
Q 046196 298 NVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG------PARALFMDEISTGLDSSTTYQIVNSLRQS 371 (1436)
Q Consensus 298 ~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~------~~~illLDEptsgLD~~t~~~i~~~l~~~ 371 (1436)
......+...+.+ +..|.. ....+|+|++|++..+.+++. .|++++ +|++|......+++.+.+.
T Consensus 188 ~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0001111222333 222211 113589999999999998887 578876 9999999999999998875
Q ss_pred H
Q 046196 372 I 372 (1436)
Q Consensus 372 ~ 372 (1436)
.
T Consensus 259 ~ 259 (337)
T 2qm8_A 259 R 259 (337)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-10 Score=138.04 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 989 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~----~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++.+.|.++|+|+|++ .....+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 58999999999999999999999999999866688999999994 567889999999
Q ss_pred ec
Q 046196 1065 KR 1066 (1436)
Q Consensus 1065 ~~ 1066 (1436)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-11 Score=148.46 Aligned_cols=171 Identities=12% Similarity=0.119 Sum_probs=97.5
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHH
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLV 946 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~ 946 (1436)
-+++++++++|+.++|+|+|||||||||++|+|... .+.+++... ....+|++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 478999999999999999999999999999999742 234443321 2233556655431 1112211110
Q ss_pred HHHHhcCCCCCCHHHH--HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 947 YSAWLRLPPEVDSDTR--KMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 947 ~~~~l~~~~~~~~~~~--~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
+............... .+.++.++..+++. +. ....||+|++||+.+|++|+.+|.+|++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000000111000 00011122222222 11 1346999999999999999999999999 999998
Q ss_pred HHHHHHHHHHH-HHhCCCEEEEEecCCCHHHHHhhCeEE
Q 046196 1025 AAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFDAFDELL 1062 (1436)
Q Consensus 1025 ~~~~i~~~l~~-~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1062 (1436)
.+ ..++.+++ +.+.|.+++.+|......+-++++.+.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 77 44444444 444577776655432334555555543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-11 Score=144.91 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=94.6
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc-------cccce--EEEeecCCCCCCCCcHHHH
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE-------TFARI--SGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~q~~~~~~~lTv~e~ 944 (1436)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+++. +.+++|...+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999876 4579999999876321 11222 4589999888999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
+.+...... +. -+++..|+.+..+. =.++.-.|++++..++.+++||.+| |
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~---- 254 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-G---- 254 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-T----
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-H----
Confidence 976532110 00 01111222221111 1223334888888777777777444 3
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecC
Q 046196 1025 AAAIVMRTVRNTVD-TGRTVVCTIHQ 1049 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~-~g~tvi~~~H~ 1049 (1436)
+.+++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 455556666653 48999999995
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.6e-11 Score=139.46 Aligned_cols=75 Identities=15% Similarity=0.051 Sum_probs=62.8
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---------cceEEEecCCCCcCCCCCHH
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---------QRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
..++|++++|+||||||||||++.|+|.+.|+ +|+|.+.|.++..... +..+.+++|.....+.+||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 34789999999999999999999999999887 8999999988754321 12356999998889999999
Q ss_pred HHHHhhh
Q 046196 247 ETLAFSA 253 (1436)
Q Consensus 247 E~l~f~~ 253 (1436)
|++.++.
T Consensus 202 e~l~~~~ 208 (328)
T 3e70_C 202 DAIQHAK 208 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-10 Score=122.87 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=42.1
Q ss_pred hhCCCcceeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 046196 1006 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1052 (1436)
Q Consensus 1006 ~~~p~illlDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 1052 (1436)
+.+|++|+||||++ ++|+.....+.+.+.+..++|+++|+|||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 55999999999995 999999999999999887789999999998753
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-11 Score=144.97 Aligned_cols=170 Identities=14% Similarity=0.118 Sum_probs=98.1
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHH
Q 046196 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETL 249 (1436)
Q Consensus 170 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l 249 (1436)
-+++++++++|+.++|+|+|||||||||++|+|..+ .+.+.+.+... ..++++.+++. ..+++.|+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecCc--ceEEEEecc
Confidence 489999999999999999999999999999999742 23333333222 23556655431 111222211
Q ss_pred Hh---hhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 250 AF---SARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 250 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
-+ .....+.+. .+.+. ...++.++..+++. ++....+
T Consensus 214 Gli~~a~~~~~L~~------------------------~fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------------------------EFLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------------------------HHHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------------------------HHHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 00000 00011122333332 2334469
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
|+||+||+.+|++|...|.++++ +.+|.... ..++.+++.....+.+++.+..+....+.++++.|
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999877 55555555443333455544444444455555543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-12 Score=158.68 Aligned_cols=173 Identities=12% Similarity=0.047 Sum_probs=102.0
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCC-------
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHS------- 936 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~------- 936 (1436)
..+++++++.+++|+.++|+|||||||||||++|+|..+ +.+|.|.++|.+.-.......+++..|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 358999999999999999999999999999999999886 45899999986521111123345555443322
Q ss_pred ---------------CCCcHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcc--ccccccc-C----CCCCCCCH
Q 046196 937 ---------------PHVTVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNP--IREALVG-L----PGVSGLST 993 (1436)
Q Consensus 937 ---------------~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~--~~~~~~g-~----~~~~~LSg 993 (1436)
..++..|++.+........ .... .....++++++.+...+ +...+.. . .....+|+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 2344444433322111100 0000 00001233333333211 1111100 0 00134799
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCCC
Q 046196 994 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPS 1051 (1436)
Q Consensus 994 GqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~ 1051 (1436)
|||||++++. + | |+|||+.+...+++.|.++...|+|+++ ++|+.+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ 451 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE 451 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH
Confidence 9999987752 1 7 9999998877777777766666788875 788754
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.92 E-value=8.9e-12 Score=153.91 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=65.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
.+++++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|++.|.+--.......++++.|........|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 4789999999999999999999999999999999999987 8999999865222212345667776654334568888
Q ss_pred HHHhhhh
Q 046196 248 TLAFSAR 254 (1436)
Q Consensus 248 ~l~f~~~ 254 (1436)
.+..+.+
T Consensus 325 ~l~~~LR 331 (511)
T 2oap_1 325 LLRAALR 331 (511)
T ss_dssp HHHTTGG
T ss_pred HHHHhhc
Confidence 8876655
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=128.27 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=72.9
Q ss_pred HHHHHHHhCCcc-------cccccccC----cccccCChhhhhHH------HHHHHHhcC-CceeEEeCCCCCCChHHHH
Q 046196 301 TDYVLKILGLEV-------CADTMVGD----EMLRGISGGQRKRL------TTGEMLVGP-ARALFMDEISTGLDSSTTY 362 (1436)
Q Consensus 301 ~~~~l~~lgL~~-------~~dt~vg~----~~~~~LSGGqkqRv------sia~al~~~-~~illLDEptsgLD~~t~~ 362 (1436)
++..++.+++++ ..+..+.+ ..+..||||||||+ ++|+++..+ |++|+|||||+|||+.++.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 345677777765 11222222 34567999999988 557899999 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 363 QIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 363 ~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.+.+.|+++. .+++ |+.++|+. ++...+|++++|+
T Consensus 325 ~l~~~l~~~~--~~~~-vi~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVK--SIPQ-MIIITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCC--SCSE-EEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHhc--cCCe-EEEEEChH-HHHhhCCEEEEEE
Confidence 9999998752 2344 55566765 5788999999997
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-11 Score=146.10 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=90.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEec-----
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYIS----- 234 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~----- 234 (1436)
..+|+++ + .++|++++|+|||||||||||++|+|.++++ +|+|.+.|.++....+ .+.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4478888 4 4899999999999999999999999999887 8999999887642111 12234433
Q ss_pred ----CCCCc--CCC----CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHH
Q 046196 235 ----QNDLH--IGE----MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYV 304 (1436)
Q Consensus 235 ----Q~~~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1436)
|++.. +++ .|+++++.++..-..+-. . +... + ....++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~------t---------lh~~-~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMS------T---------LHTN-T--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEE------E---------ECCS-S--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCccc------c---------cchh-h--------------HHHHHH-H
Confidence 77554 344 588888876531100000 0 0000 0 001112 3
Q ss_pred HHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeE
Q 046196 305 LKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348 (1436)
Q Consensus 305 l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~ill 348 (1436)
|..+|++... ....|||||+|| ||++++.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5667876532 224699999999 9999999999876
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-10 Score=134.27 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=89.9
Q ss_pred cccc-eEEEeCCeEEEEEccCCCChhHHHHhH--cCCCCC---CceeEEEEECCccCCcccccceEEEeecCCCCCCCCc
Q 046196 867 LKGV-SGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTG---GYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940 (1436)
Q Consensus 867 L~~v-s~~i~~Ge~~ai~G~nGaGKSTLl~~L--~g~~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 940 (1436)
|+.+ .+-|++|++++|+||||||||||++.| .+..++ +...+.+++++.....
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~--------------------- 225 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR--------------------- 225 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------
Confidence 4443 368999999999999999999999954 455431 1123567777653210
Q ss_pred HHHHHH-HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH-HHHHHHHHHHHHh--hCCCcceeeC
Q 046196 941 VYESLV-YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDE 1016 (1436)
Q Consensus 941 v~e~l~-~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSg-GqrqRl~iA~aL~--~~p~illlDE 1016 (1436)
. +.+. ....+. ... +++++.+-+ . +..+. .+.+.+.-+.+++ .+|+++++||
T Consensus 226 ~-~rl~~~a~~~g----l~~-------~~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs 281 (400)
T 3lda_A 226 P-VRLVSIAQRFG----LDP-------DDALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDS 281 (400)
T ss_dssp H-HHHHHHHHHTT----CCH-------HHHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEET
T ss_pred H-HHHHHHHHHcC----CCh-------HhHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecc
Confidence 0 0010 000110 110 112221111 0 11222 2334444444443 4699999999
Q ss_pred CCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCC------------------HHHHHhhCeEEEEe
Q 046196 1017 PTSGLDARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFDAFDELLLMK 1065 (1436)
Q Consensus 1017 PTsgLD~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~D~v~~l~ 1065 (1436)
||+.+|+... ..+++.|++++++ |+|||+|+|..+ ..+...+|.++.|.
T Consensus 282 ~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~ 361 (400)
T 3lda_A 282 VMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFK 361 (400)
T ss_dssp GGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEE
T ss_pred hhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEE
Confidence 9999997533 5678888888755 999999999721 12345679999998
Q ss_pred cC
Q 046196 1066 RG 1067 (1436)
Q Consensus 1066 ~G 1067 (1436)
++
T Consensus 362 ~~ 363 (400)
T 3lda_A 362 KG 363 (400)
T ss_dssp EC
T ss_pred ec
Confidence 64
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=7e-11 Score=136.93 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=80.9
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEE---CCccCCcc--ccc-ceEEEeecCCCCC-----CCCcHH
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI---SGYPKNQE--TFA-RISGYCEQTDIHS-----PHVTVY 942 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~q~~~~~-----~~lTv~ 942 (1436)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ... +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3469999999999999999999999 765 56899999 88776432 122 2479999988553 68899
Q ss_pred HHH--HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 046196 943 ESL--VYSA----WLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSGLSTEQRKRLTIAVE 1004 (1436)
Q Consensus 943 e~l--~~~~----~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~LSgGqrqRl~iA~a 1004 (1436)
|++ .|.. .++.....+..+....++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 4431 0112111112222345789999999986 556553 4699989999999874
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-11 Score=136.33 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=84.5
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHH----
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAW---- 950 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~---- 950 (1436)
+++.++||.|+||||||||.+.|++.... .| .. .+.+.+|+|++.+++. ++++++.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~~------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------GG------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------GG------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------CC------CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 47889999999999999999999987641 12 00 2345566999988764 88889877521
Q ss_pred hc---CCCCCCHHHHHHHHHHHHHHcCCc--cc--ccccccCCCCCCCCHHHHHHHHHH--HHHhhCCCcceeeCCCCCC
Q 046196 951 LR---LPPEVDSDTRKMFVEEVMELVELN--PI--REALVGLPGVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGL 1021 (1436)
Q Consensus 951 l~---~~~~~~~~~~~~~v~~vl~~l~l~--~~--~~~~~g~~~~~~LSgGqrqRl~iA--~aL~~~p~illlDEPTsgL 1021 (1436)
+. .|...+ .....+.++.+... .. ....+. .....+||||+||+.+| +++ +|+|||+||||+++
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 11 122222 22345556655432 00 001111 11256899999999997 555 99999999999999
Q ss_pred CHHH
Q 046196 1022 DARA 1025 (1436)
Q Consensus 1022 D~~~ 1025 (1436)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-12 Score=153.06 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=95.0
Q ss_pred hccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-------ccccceEE
Q 046196 855 KAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-------ETFARISG 927 (1436)
Q Consensus 855 ~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~g 927 (1436)
++.+..++...+|+++ + .++|++++|+|||||||||||++|+|... +.+|+|.+.|.|+.. ....+.+|
T Consensus 147 ~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g 222 (418)
T 1p9r_A 147 HSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVD 222 (418)
T ss_dssp GGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred HHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccC
Confidence 3344444455689998 5 48999999999999999999999999876 347999998877532 11223344
Q ss_pred Eee---------cCCCC--CCC----CcHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 928 YCE---------QTDIH--SPH----VTVYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 928 yv~---------q~~~~--~~~----lTv~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
+.+ |++.. ... .|+.+++.++..-... .........+.+ +.+..+++.+.. . ...|
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~-----~~~L 294 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--I-----SSSL 294 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--H-----HHHE
T ss_pred cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--H-----HHHH
Confidence 544 76544 233 5889988775421100 000001111122 346677887543 2 2469
Q ss_pred CHHHHHHHHHHHHHhhCCCcce
Q 046196 992 STEQRKRLTIAVELVANPSIIF 1013 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~ill 1013 (1436)
||||+|| ||++|+.+|++..
T Consensus 295 Sgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 295 LGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHH--hhhhhcCCCCccC
Confidence 9999999 9999999999875
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-10 Score=130.95 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=78.6
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCcccc---ceEEEecCCCCcC-----CCCCH
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY---NGHGMEEFVPQ---RTSAYISQNDLHI-----GEMTV 245 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~---~~~~yv~Q~~~~~-----~~lTV 245 (1436)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+..... +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3568999999999999999999999 88887 899999 88876543211 2479999997543 68899
Q ss_pred HHHH--HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-cccccccCcc
Q 046196 246 RETL--AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV-CADTMVGDEM 322 (1436)
Q Consensus 246 ~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~ 322 (1436)
|++ .|+ +.. +. . |+ ..+..+. .+....++.+++.+||++ .++..
T Consensus 238 -e~l~~~f~-~~~------~~-~--c~---~~~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~----- 284 (302)
T 2yv5_A 238 -REVRNYFR-EFL------RY-Q--CK---YPDCTHT--------------NEPGCAVKEAVKNGEISCERYKSY----- 284 (302)
T ss_dssp -GGGGGGCG-GGH------HH-H--HH---STTCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHH-----
T ss_pred -HHHHHHHH-HHH------Hc-c--CC---CCCCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHH-----
Confidence 888 443 100 00 0 00 0000000 011224566788999975 55543
Q ss_pred cccCChhhhhHHHHHH
Q 046196 323 LRGISGGQRKRLTTGE 338 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~ 338 (1436)
++.|||.++|++.|||
T Consensus 285 ~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 285 LKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4569998899999986
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-10 Score=121.63 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=34.7
Q ss_pred hcCCceeEEeCCCC-CCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 046196 341 VGPARALFMDEIST-GLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP 388 (1436)
Q Consensus 341 ~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 388 (1436)
+.+|++|+||||++ ++|......+.+.+..... .+.++|++.+++..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChh
Confidence 34889999999985 9999999988888877643 34566665444443
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=9.5e-13 Score=143.21 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=43.2
Q ss_pred HHH-HHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 336 TGE-MLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 336 ia~-al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+.. .+.| . . ..+|.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 455 7788999999999999999999999999888765421 1223 1 2 57899988864
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-11 Score=129.71 Aligned_cols=30 Identities=40% Similarity=0.492 Sum_probs=28.2
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999875
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-09 Score=128.80 Aligned_cols=164 Identities=14% Similarity=0.005 Sum_probs=85.5
Q ss_pred EEEEccCCCChhHHHHhHcC-CCCCCceeEEEEECCccCCc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAG-RKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEV 957 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g-~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~ 957 (1436)
+.|.||||+|||||+++|+| ... +..|.+.++|.+... ......+++++|.+.+..... +. ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--DM----------GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--hc----------CCc
Confidence 89999999999999999999 443 357899998876432 112345678887654311110 00 000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH
Q 046196 958 DSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037 (1436)
Q Consensus 958 ~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~ 1037 (1436)
... .+++.++.+......+... .+|| +..+|+++++|||++ ||+.+...+.+.+.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333322111011110 3565 788999999999999 99999999999998864
Q ss_pred hCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHhhh
Q 046196 1038 DTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYFEG 1089 (1436)
Q Consensus 1038 ~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf~~ 1089 (1436)
.++++|+++|+++...-..-+| ...+.+.|+.. .++.++...
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~~ 204 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILSD 204 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHHH
Confidence 3689999999976311122222 24555666542 455555543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-11 Score=144.54 Aligned_cols=169 Identities=14% Similarity=0.179 Sum_probs=114.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhc------------CcCCCCCcceEEEECCccCCC----ccccceE---EEecCC
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAG------------KLGKDLKFSGRVTYNGHGMEE----FVPQRTS---AYISQN 236 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G------------~~~~~~~~~G~V~~~G~~~~~----~~~~~~~---~yv~Q~ 236 (1436)
.+++|..++|+|+||||||||+++|+| .++|+ +|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 567899999999999999999999999 33444 8999999854321 1223333 466777
Q ss_pred CCcCCCCCHHHHH--HhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccc
Q 046196 237 DLHIGEMTVRETL--AFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCA 314 (1436)
Q Consensus 237 ~~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 314 (1436)
+-+...++..|++ .|-...+.. +.++..+...+
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhccc--
Confidence 7767666665544 232211110 00111111111
Q ss_pred cccccCcccccCChhhhhHHHHHHHHhcCC--ceeEEeCCCCCCChHHHHHHHHHHHHH-HHhcCCeEEEEEecCchhHH
Q 046196 315 DTMVGDEMLRGISGGQRKRLTTGEMLVGPA--RALFMDEISTGLDSSTTYQIVNSLRQS-IHILNGTAVISLLQPAPETY 391 (1436)
Q Consensus 315 dt~vg~~~~~~LSGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~-~~~~~~t~ii~i~q~~~~~~ 391 (1436)
+..+..+||+. +| +++++|||+.++|.......++.++.. .. ++++++ .|...++.
T Consensus 128 -----d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~--~g~ti~--sh~~~~~~ 186 (392)
T 1ni3_A 128 -----DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR--GANTLE--MKAKKEEQ 186 (392)
T ss_dssp -----TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--SSCSSS--HHHHHHHH
T ss_pred -----cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh--cCCccc--cccHHHHH
Confidence 22233467653 88 999999999999999999888888875 32 344443 78888899
Q ss_pred HhcccEE-EecCC-eEEEecChhH
Q 046196 392 ELFDDLI-LLSDG-QIVYQGPREN 413 (1436)
Q Consensus 392 ~~~D~ii-vL~~G-~iv~~G~~~~ 413 (1436)
++||++. +|.+| ++++.|+.++
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred HHHHHHHHHhccCCceeecCCCCH
Confidence 9999999 99999 9988776543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-11 Score=138.86 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=92.5
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCC-CcCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQND-LHIGEM 243 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~-~~~~~l 243 (1436)
.+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|+. ...+.+
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 4899999999999 999999999999999999998754 789999987643221 23456666653 344555
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
++.|++.+....++ .... + .+.... +..+
T Consensus 107 ~~~Deid~~~~~r~--------------~~~~--------~------------------------~~~~~~-----~~~l 135 (274)
T 2x8a_A 107 IFFDEVDALCPRRS--------------DRET--------G------------------------ASVRVV-----NQLL 135 (274)
T ss_dssp EEEETCTTTCC-------------------------------------------------------CTTHH-----HHHH
T ss_pred EeeehhhhhhcccC--------------CCcc--------h------------------------HHHHHH-----HHHH
Confidence 55555544221000 0000 0 000011 1223
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCC------------CCChHHHHHHHHHH
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEIST------------GLDSSTTYQIVNSL 368 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEpts------------gLD~~t~~~i~~~l 368 (1436)
..|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 136 ~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 136 TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 459999999999999999999986 88864 23555566665543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-09 Score=126.71 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=42.3
Q ss_pred cCCceeEEeCCCCCCChHHH------------HHHHHHHHHHHHhcCCeEEEEEecCc-------------------hhH
Q 046196 342 GPARALFMDEISTGLDSSTT------------YQIVNSLRQSIHILNGTAVISLLQPA-------------------PET 390 (1436)
Q Consensus 342 ~~~~illLDEptsgLD~~t~------------~~i~~~l~~~~~~~~~t~ii~i~q~~-------------------~~~ 390 (1436)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ ++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 57999999999999997543 66788888888765545444 56651 223
Q ss_pred HHhcccEEEecCCe
Q 046196 391 YELFDDLILLSDGQ 404 (1436)
Q Consensus 391 ~~~~D~iivL~~G~ 404 (1436)
...+|.++.|++|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56688888887653
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.77 E-value=6e-11 Score=129.95 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=67.6
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCC-CceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhc
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLR 952 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~ 952 (1436)
.++|++++|+||||||||||+++|+|...+ |+..|.|.++|....... .+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~--------------------~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL--------------------LEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH--------------------HGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH--------------------HHHhcccccCC
Confidence 579999999999999999999999997642 123566666554432211 11110000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH-HHHhhCCCcceeeCCC
Q 046196 953 LPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPT 1018 (1436)
Q Consensus 953 ~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA-~aL~~~p~illlDEPT 1018 (1436)
.+...+... ..+.+..+...+-.+...... ..++|+||+||+++| ++++.++.++++|||.
T Consensus 79 ~~~~~~~~~----~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFEG----FQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHHH----HHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHHH----HHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 011111111 122222221111111111111 235799999999998 8899999999999984
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-11 Score=145.17 Aligned_cols=170 Identities=9% Similarity=0.083 Sum_probs=114.9
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCC----------CCCceeEEEEECCccCCc----ccccce---EEEeecCCCC
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYVSGSITISGYPKNQ----ETFARI---SGYCEQTDIH 935 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~gyv~q~~~~ 935 (1436)
.+++|..++|+|+||||||||+|+|+|.. +-.+..|.+.++|..... ...++. ..++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 55789999999999999999999999932 112578999998843211 001122 2467777777
Q ss_pred CCCCcHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--Cc
Q 046196 936 SPHVTVYESL--VYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANP--SI 1011 (1436)
Q Consensus 936 ~~~lTv~e~l--~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p--~i 1011 (1436)
.+..+..|.+ .|.+.++.. +.++..++..+ + ..+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d-----~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--D-----AEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--T-----TCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--c-----ceeeeecccc------------Ccchhh
Confidence 7777766655 443333311 11111111111 1 1122345432 89 99
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCCCHHHHHhhCeEE-EEecCc-EEEEEcCCC
Q 046196 1012 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFDAFDELL-LMKRGG-EEIYVGPLG 1077 (1436)
Q Consensus 1012 lllDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~D~v~-~l~~Gg-~~~y~G~~~ 1077 (1436)
+++|||+.++|+......++.+++. .+.|.||+ +|... ++.+.+|++. +|.+ | +.++.|...
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 9999999999999999999999988 66677764 99865 6788999999 8876 6 677777664
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.4e-09 Score=107.43 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=29.5
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56666 8999999999999999999999998765
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.8e-10 Score=131.32 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=59.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEE---CCccCCCccccceEEEecCCCCcCCCCCHHHHHHhh
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLG--KDLKFSGRVTY---NGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFS 252 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~ 252 (1436)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|...... ..+.++++ |+..+.+.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8999999999999999999999999987 76 899999 88764321 12446788 777777889999999876
Q ss_pred hhh
Q 046196 253 ARC 255 (1436)
Q Consensus 253 ~~~ 255 (1436)
.++
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-12 Score=138.27 Aligned_cols=56 Identities=11% Similarity=0.227 Sum_probs=43.8
Q ss_pred HHH-HHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 1001 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1001 iA~-aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
+++ +++.+|++++|||+|+++|..+...|.+.|.+..+. +..+|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678899999999999999999999999998876543 2334622 4689988876
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-10 Score=135.29 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=102.2
Q ss_pred ceeeecceEEEeCC-------eEEEEEcCCCCCHHHHHHHHhcCcCCCC-CcceEEEECCccCCCc---cccceEEEecC
Q 046196 167 LTILHDVSGIIKPQ-------RLTLLLGPPSSGKTTLLLALAGKLGKDL-KFSGRVTYNGHGMEEF---VPQRTSAYISQ 235 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~---~~~~~~~yv~Q 235 (1436)
..+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34788888888876 8899999999999999999999984321 1366666665544221 11346899999
Q ss_pred CCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc
Q 046196 236 NDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD 315 (1436)
Q Consensus 236 ~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 315 (1436)
.+.+.+ ++.|++....+..+. +.+. ... + ....++..+..++|.. ++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~----~i~~--~~~-------~-----------------~~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQI----DIMI--GKG-------P-----------------SAKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EE
T ss_pred hhhcCH--HHHHHHHHHHHhccc----ceee--ccC-------c-----------------ccccccccCCCeEEEE-ec
Confidence 876554 788888543321110 0000 000 0 0001122233344433 44
Q ss_pred ccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcc
Q 046196 316 TMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFD 395 (1436)
Q Consensus 316 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 395 (1436)
+.. ..||+|+|||+.++ .+||+.+..++.+.|++.++..+ +.++...+..+++
T Consensus 158 ~~~-----~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~------~~~~~~~~~~ia~ 210 (334)
T 1in4_A 158 TRS-----GLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD------VEIEDAAAEMIAK 210 (334)
T ss_dssp SCG-----GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT------CCBCHHHHHHHHH
T ss_pred CCc-----ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC------CCcCHHHHHHHHH
Confidence 443 35999999998654 78899999999999988765432 1344444445555
Q ss_pred c
Q 046196 396 D 396 (1436)
Q Consensus 396 ~ 396 (1436)
+
T Consensus 211 ~ 211 (334)
T 1in4_A 211 R 211 (334)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-09 Score=124.97 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=66.1
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEE---CCccCCcc-cccce-EEEeecCCCCCC----CCcHH
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI---SGYPKNQE-TFARI-SGYCEQTDIHSP----HVTVY 942 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~q~~~~~~----~lTv~ 942 (1436)
+.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 3456899999999999999999999999876 56899998 77665321 12222 799999987655 6889
Q ss_pred HHHH--HHH------HhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 943 ESLV--YSA------WLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 943 e~l~--~~~------~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
|++. |.. .++........+....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 321 1122211111222335789999999976433221 246667766
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-10 Score=135.32 Aligned_cols=152 Identities=16% Similarity=0.073 Sum_probs=94.4
Q ss_pred cccccccceEEEeCC-------eEEEEEccCCCChhHHHHhHcCCCCC--CceeEEEEECCccCCc---ccccceEEEee
Q 046196 863 RLEFLKGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYVSGSITISGYPKNQ---ETFARISGYCE 930 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~G-------e~~ai~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~ 930 (1436)
+..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.++.. ...++.++++.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 345889999999877 88999999999999999999986521 1345655555443211 11134688999
Q ss_pred cCCCCCCCCcHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046196 931 QTDIHSPHVTVYESLVYSAWLRLPPE-VDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANP 1009 (1436)
Q Consensus 931 q~~~~~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p 1009 (1436)
|.+.+.+ ++.|++..........- .......+.+++.++.+++.. .++. ...||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 8877765 78888854322111000 001111122334444444433 3332 346999999998665
Q ss_pred CcceeeCCCCCCCHHHHHHHHHHHHHHHh
Q 046196 1010 SIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038 (1436)
Q Consensus 1010 ~illlDEPTsgLD~~~~~~i~~~l~~~~~ 1038 (1436)
.+||+.+...+.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78888899999999988764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-09 Score=124.78 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=51.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCccc---cceEEEecCCCC----------
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY---NGHGMEEFVP---QRTSAYISQNDL---------- 238 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~---~~~~~yv~Q~~~---------- 238 (1436)
+.+.+|++++|+|||||||||||++|+|...|+ +|+|.+ +|+++..... .+.++|++|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 345679999999999999999999999999998 999999 8887754321 135799999864
Q ss_pred ------cCCCCCHHHHHHhh
Q 046196 239 ------HIGEMTVRETLAFS 252 (1436)
Q Consensus 239 ------~~~~lTV~E~l~f~ 252 (1436)
+++++|| ||+.|+
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHHhccc-ccCcCC
Confidence 5788888 888875
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-08 Score=118.78 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=67.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc-CcCCCCCcceEEEECCccCCCccc-cceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCC
Q 046196 183 TLLLGPPSSGKTTLLLALAG-KLGKDLKFSGRVTYNGHGMEEFVP-QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGP 260 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~ 260 (1436)
++|.||||+|||||+++|+| .+.++ .|+|.++|.+...... ...+++++|.+.+..+.+ ..+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS----------DMGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh----------hcCCcc
Confidence 89999999999999999999 56666 7999999876543222 245677877654311110 000000
Q ss_pred chhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHH
Q 046196 261 RYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340 (1436)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al 340 (1436)
+ ..+...++.+......+..+ .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 0 00011111111100001000 3566 7
Q ss_pred hcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCch
Q 046196 341 VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAP 388 (1436)
Q Consensus 341 ~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 388 (1436)
.++|+++++|||++ ||..+...+.+.+.+.. .++++|.++|...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 78999999999999 99999999999988742 3566666666544
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-11 Score=138.09 Aligned_cols=129 Identities=18% Similarity=0.189 Sum_probs=88.5
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cccceEEEeecCC-CCCCC
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TFARISGYCEQTD-IHSPH 938 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~-~~~~~ 938 (1436)
...+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++... ...+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 346899999999999 99999999999999999999764 27899999775322 1234467777764 45566
Q ss_pred CcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 046196 939 VTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1018 (1436)
Q Consensus 939 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPT 1018 (1436)
+++.|++...+..+ . ... .+ .+....+.. ...|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-----~-~~~---~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-----S-DRE---TG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-----C-CCc---ch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 77777765322111 0 000 00 122223333 2358999999999999999999986 8886
Q ss_pred C
Q 046196 1019 S 1019 (1436)
Q Consensus 1019 s 1019 (1436)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-08 Score=123.78 Aligned_cols=179 Identities=12% Similarity=0.131 Sum_probs=108.3
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE-EEEECCccCCccccc-ceEEEeecCCCCCCCCcH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG-SITISGYPKNQETFA-RISGYCEQTDIHSPHVTV 941 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~-~~~gyv~q~~~~~~~lTv 941 (1436)
...|+++++-+++|+++.|.|++|+|||||+..+++... ...| .|.+.+...+...+. |..+... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 346899998999999999999999999999999987532 1123 333322222211111 1000000 0000
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCcceeeCCCC
Q 046196 942 YESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTS 1019 (1436)
Q Consensus 942 ~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~--~~p~illlDEPTs 1019 (1436)
+. ++. .....++ ...+.+.++.++..++.-. . ..++|.+|.+ ..++.++ .+|+++++|+++.
T Consensus 261 -~~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QN------LRT-GKLTPED-WGKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HH------HHT-SCCCHHH-HHHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HH------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 00 111 1122222 2234555555544333211 1 2368999987 5667776 6899999999999
Q ss_pred CCCH--------HHHHHHHHHHHHHHhC-CCEEEEEec---------C--CCH-------HHHHhhCeEEEEecC
Q 046196 1020 GLDA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFDAFDELLLMKRG 1067 (1436)
Q Consensus 1020 gLD~--------~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~D~v~~l~~G 1067 (1436)
..++ .....+.+.|+.++++ |++||+++| + |.. .+...+|.|++|.++
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 7742 3446777888888755 899999999 2 431 356679999999864
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=7.5e-09 Score=119.23 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=44.1
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCcccc-ce-EEEecCCCCcCC----CCCH
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY---NGHGMEEFVPQ-RT-SAYISQNDLHIG----EMTV 245 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~-~~-~~yv~Q~~~~~~----~lTV 245 (1436)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+..... +. .+|+.|++.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 445689999999999999999999999999887 899998 78766432211 12 699999986654 6899
Q ss_pred HHHHH
Q 046196 246 RETLA 250 (1436)
Q Consensus 246 ~E~l~ 250 (1436)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 9984
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-09 Score=117.35 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=44.0
Q ss_pred hCCCcceeeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHH-------HHHhhCeEEEEec
Q 046196 1007 ANPSIIFMDEPTSGL--DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID-------IFDAFDELLLMKR 1066 (1436)
Q Consensus 1007 ~~p~illlDEPTsgL--D~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~~D~v~~l~~ 1066 (1436)
.+|+++++|+|++.+ |+.....++..+.+++ +.|+|||+++|..... +.+.+|.++.|.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 5544555555565554 5689999999976521 3567899999975
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.59 E-value=4e-08 Score=113.51 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=79.6
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhh
Q 046196 173 VSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFS 252 (1436)
Q Consensus 173 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~ 252 (1436)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+... . ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r-----~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR-----A--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC-----H--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc-----H--------------HHHHHH---
Confidence 45567899999999999999999999999998775 6788776643210 0 000111
Q ss_pred hhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhh
Q 046196 253 ARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRK 332 (1436)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkq 332 (1436)
...++.+|++. + ...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~-----~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----I-----SHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----E-----CCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----E-----ecCCccCHH
Confidence 11233455542 1 247899999
Q ss_pred HH---HHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHH
Q 046196 333 RL---TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSI 372 (1436)
Q Consensus 333 Rv---sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~ 372 (1436)
++ ++++++..+++++++|+|.. ......+++.|+++.
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 99 89999999999999999973 455566666666554
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.58 E-value=5.8e-09 Score=120.83 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=64.7
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEE---CCccCCccc--c-cceEEEeecCCC------------
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI---SGYPKNQET--F-ARISGYCEQTDI------------ 934 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~q~~~------------ 934 (1436)
.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|.++.... . .+.+||++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 345799999999999999999999999877 56899999 887754321 1 134799999864
Q ss_pred ----CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 046196 935 ----HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-PIREAL 982 (1436)
Q Consensus 935 ----~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~ 982 (1436)
++|++|+ ||+.|.. +. . ..+....++++++.++|. +..+..
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 5788999 8887642 11 1 112234578999999995 555544
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-08 Score=121.88 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=49.2
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF 224 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~ 224 (1436)
++|+|+|++|++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++...
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~ 70 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAGS 70 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcccC
Confidence 479999999999 999999999999999999999999998 99999999877543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.49 E-value=3.1e-08 Score=114.37 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=75.6
Q ss_pred ceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHH
Q 046196 870 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSA 949 (1436)
Q Consensus 870 vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~ 949 (1436)
+++..++|++++|+|+|||||||++..|++... +..|+|.+.+.+.... ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH-------------------HHHHH-----
Confidence 455568999999999999999999999999764 2346676655432100 00111
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCCcceeeCCCCCCCHHHH
Q 046196 950 WLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1026 (1436)
Q Consensus 950 ~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl---~iA~aL~~~p~illlDEPTsgLD~~~~ 1026 (1436)
.....+.+++.. ....|+|+.+++ +|++++..+|+++++|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 122334445432 124688999999 89999999999999999974 3444
Q ss_pred HHHHHHHHHH
Q 046196 1027 AIVMRTVRNT 1036 (1436)
Q Consensus 1027 ~~i~~~l~~~ 1036 (1436)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-07 Score=106.98 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=86.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhhhhcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQG 257 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~ 257 (1436)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 579999999999999999999999998754 45 13455555432 3355555543211
Q ss_pred CCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHH
Q 046196 258 VGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG 337 (1436)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia 337 (1436)
.+|++.. . ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1222210 0 012 233355565
Q ss_pred HHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHh--cCCeEEEE-EecCchhHHHhcccEEEecCCeEEEe
Q 046196 338 EMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHI--LNGTAVIS-LLQPAPETYELFDDLILLSDGQIVYQ 408 (1436)
Q Consensus 338 ~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~--~~~t~ii~-i~q~~~~~~~~~D~iivL~~G~iv~~ 408 (1436)
+ +.+++++|+| |+|+|+.....+.+. .+.... ...++++. .+|...++.+.+|++..+..|.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el-~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDEL-KETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHH-HHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHH-HHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 999998766544433 333211 11223332 35666778888888776777777763
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-07 Score=107.58 Aligned_cols=118 Identities=19% Similarity=0.094 Sum_probs=81.5
Q ss_pred ccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHH
Q 046196 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVY 947 (1436)
Q Consensus 868 ~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~ 947 (1436)
+++++. +|++++++|+||+||||++..|++... ...|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HHH--
Confidence 677887 999999999999999999999999764 23577877765432100 00 101
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC-CCCCCHHHH
Q 046196 948 SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1026 (1436)
Q Consensus 948 ~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP-TsgLD~~~~ 1026 (1436)
..+.+..++..+.. + .+-+..+.+|..|+.+...+++++++||| ++|+|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432211 0 12344566788999988899999999999 999999888
Q ss_pred HHHHHHHHHH
Q 046196 1027 AIVMRTVRNT 1036 (1436)
Q Consensus 1027 ~~i~~~l~~~ 1036 (1436)
..+.+..+.+
T Consensus 200 ~~l~~~~~~~ 209 (295)
T 1ls1_A 200 GELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhc
Confidence 8887777655
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-08 Score=127.82 Aligned_cols=159 Identities=18% Similarity=0.235 Sum_probs=100.0
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCC---------
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQND--------- 237 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~--------- 237 (1436)
..+++++++.+++|+.++|+||||+|||||+++|+|.+++. ..|.+.+++.+.+... ..++|++|..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45889999999999999999999999999999999999875 2488999887765543 3578887643
Q ss_pred -------------CcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHH
Q 046196 238 -------------LHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYV 304 (1436)
Q Consensus 238 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1436)
+.+..+++.+|+.... +.. .+.+-.. . .. ...
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~--------------------~~~~~v~---------~--~~---~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGR--------------------TKAPFID---------A--TG---AHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECC-TTC--------------------SSCCEEE---------C--TT---CCH
T ss_pred Hhhccchhhhhhcccccccccccceeecc-ccC--------------------CCCCEEE---------c--CC---CCH
Confidence 2222233333322110 000 0000000 0 00 001
Q ss_pred HHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHH
Q 046196 305 LKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQ 370 (1436)
Q Consensus 305 l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~ 370 (1436)
-+.+|.-+... ....++|+|++|++..+.....++.+|||||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 12233211111 1113699999999999999999999999999998 888887777777764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.8e-10 Score=124.13 Aligned_cols=38 Identities=32% Similarity=0.260 Sum_probs=22.9
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHc-CCCC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 902 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~-g~~~ 902 (1436)
+..+++|+++++|++++|+||||||||||+++|+ |..+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999999 9864
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.6e-07 Score=98.93 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=42.3
Q ss_pred cCCceeEEeCCCCCC--ChHHHHHHHHHHHHHHHhcCCeEEEEEecCchh--------HHHhcccEEEecC
Q 046196 342 GPARALFMDEISTGL--DSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE--------TYELFDDLILLSD 402 (1436)
Q Consensus 342 ~~~~illLDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~--------~~~~~D~iivL~~ 402 (1436)
.+|+++++|+|++.+ |.....+++..+.+.++..+. +++.++|...+ +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGC-TSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTC-EEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCC-eEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 478999999999988 665566777777777655544 44446665544 4678899999964
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-08 Score=117.40 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=67.3
Q ss_pred cccccceEEE-------------------eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEE---CCccCCcccc
Q 046196 865 EFLKGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITI---SGYPKNQETF 922 (1436)
Q Consensus 865 ~iL~~vs~~i-------------------~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~~ 922 (1436)
++++++++.+ ++|+++||+||||||||||+++|+|.....+.+|+|.+ ||...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 3788888877 89999999999999999999999997541135799999 98775432 2
Q ss_pred cceEEEeecCCCCCCCCcHHHHHHHHHHhc
Q 046196 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLR 952 (1436)
Q Consensus 923 ~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~ 952 (1436)
++.+|++ |...+++.+|+.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 3446788 7777778899999998766554
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.5e-08 Score=106.15 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHH
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1036 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~ 1036 (1436)
+...+|++++.+|+++++| ||++|..+...+.+.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999988753
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.40 E-value=2.8e-07 Score=108.60 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhC--CCcceeeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCCCH-----
Q 046196 997 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1052 (1436)
Q Consensus 997 qRl~iA~aL~~~--p~illlDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1052 (1436)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|+|||+++|..+.
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2223444555554 3459999999996431
Q ss_pred ----------HHHHhhCeEEEEecCcEEEEEcC
Q 046196 1053 ----------DIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 1053 ----------~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
.+...+|.++.+.+ ++.+-.|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 13457888888876 34443443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-10 Score=130.75 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=81.7
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cccceEEEeecCCC-CCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TFARISGYCEQTDI-HSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~-~~~~l 939 (1436)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+.... ...+.+++++|... ..|.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 45899999999999 89999999999999999998764 57888988653211 11233556666543 45677
Q ss_pred cHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 046196 940 TVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSI 1011 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~i 1011 (1436)
++.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 8888885432211100 001112222222222 13789999999999999999987
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.37 E-value=6.7e-07 Score=109.62 Aligned_cols=183 Identities=17% Similarity=0.160 Sum_probs=105.2
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCH
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV 245 (1436)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 345799999999999999999999999999999999876432 23 023444322 233
Q ss_pred HHHHHhh-hhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 246 RETLAFS-ARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 246 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
.+...-. +...++.. ..+ + .+...+.+.+ .+...++.++..+. .+-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~-----~~l----~-~g~l~~~~~~---------------~~~~a~~~l~~~~l---~i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA-----QNL----R-TGKLTPEDWG---------------KLTMAMGSLSNAGI---YIDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH-----HHH----H-TSCCCHHHHH---------------HHHHHHHHHHSSCE---EEEC--CT
T ss_pred HHHHHHHHHHHcCCCH-----HHH----h-cCCCCHHHHH---------------HHHHHHHHHhcCCE---EEEC--CC
Confidence 2222110 00001000 000 0 0000000111 11122333332221 1111 23
Q ss_pred cCChhhhhHHHHHHHHh--cCCceeEEeCCCCCCCh--------HHHHHHHHHHHHHHHhcCCeEEEEEec---------
Q 046196 325 GISGGQRKRLTTGEMLV--GPARALFMDEISTGLDS--------STTYQIVNSLRQSIHILNGTAVISLLQ--------- 385 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~--~~~~illLDEptsgLD~--------~t~~~i~~~l~~~~~~~~~t~ii~i~q--------- 385 (1436)
++|++|.+ +.++.+. .+|+++++|+++...+. .....+.+.|+.+++..+.++|+ ++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCC
Confidence 59999986 5566665 67999999999998743 23367778888888766555444 666
Q ss_pred ---Cc-------hhHHHhcccEEEecCCeE
Q 046196 386 ---PA-------PETYELFDDLILLSDGQI 405 (1436)
Q Consensus 386 ---~~-------~~~~~~~D~iivL~~G~i 405 (1436)
|. ..+...+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987654
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.8e-10 Score=128.51 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=82.6
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cccceEEEeecCC-CCCCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TFARISGYCEQTD-IHSPHV 939 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~-~~~~~l 939 (1436)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|.. ...|.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 45899999999999 89999999999999999998754 57888888653211 1123345666653 345677
Q ss_pred cHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 046196 940 TVYESLVYSAWLRLPP-EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1017 (1436)
Q Consensus 940 Tv~e~l~~~~~l~~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP 1017 (1436)
++.|++......+... ....++..+.+.+++. .|||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 8878774332211110 0011222222333322 3788999999999999999986 4543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-08 Score=130.18 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=99.8
Q ss_pred ccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCC-------
Q 046196 862 DRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDI------- 934 (1436)
Q Consensus 862 ~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~------- 934 (1436)
+...+++++++.+++|+.++|+||||+|||||+++|++...+ ...|.+.+++.+... ....++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 345689999999999999999999999999999999998753 234888898876543 2345788876431
Q ss_pred ---------------CCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 046196 935 ---------------HSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRL 999 (1436)
Q Consensus 935 ---------------~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl 999 (1436)
.+..+++.+|+.....-..+...-.. . ....-+.+|........ ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCccccccccc
Confidence 11122222222100000000000000 0 00011122221111111 146999999999
Q ss_pred HHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHH
Q 046196 1000 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035 (1436)
Q Consensus 1000 ~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~ 1035 (1436)
..++....++.+|||||... |++.....+.+.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899888888888775
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.5e-08 Score=118.27 Aligned_cols=51 Identities=20% Similarity=0.138 Sum_probs=46.8
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
.+|+|+|++|++ ++++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 479999999999 9999999999999999999999876 56899999998764
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.9e-08 Score=107.88 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=49.3
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---ccceEEEecCCCCcCCCCCHHHHHH
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---PQRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999863 2445554433221 1345789999877777777766654
Q ss_pred h
Q 046196 251 F 251 (1436)
Q Consensus 251 f 251 (1436)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-07 Score=106.17 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=82.1
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP 954 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~ 954 (1436)
++|++++|+|+||+||||++..|++... +.+| +.+.++.++.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 4799999999999999999999998753 1234 12445554431 2345555543221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHH
Q 046196 955 PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034 (1436)
Q Consensus 955 ~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~ 1034 (1436)
..++... ...+. ..-+.+|+ .+.+|+++++| |+|+|+.....+.++.+
T Consensus 159 -----------------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 159 -----------------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -----------------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -----------------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 1122110 01222 22344454 45999999999 99999877665555444
Q ss_pred HHH---hCCCEEEE-EecCCCHHHHHhhCeEEEEecCcEEEEE
Q 046196 1035 NTV---DTGRTVVC-TIHQPSIDIFDAFDELLLMKRGGEEIYV 1073 (1436)
Q Consensus 1035 ~~~---~~g~tvi~-~~H~~~~~~~~~~D~v~~l~~Gg~~~y~ 1073 (1436)
-+. ..+.++|+ ++|... ++.+.+|++-.+..+ .++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~-giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVN-QYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCC-EEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCC-EEEEe
Confidence 332 12334444 377643 566667766555554 44443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=100.67 Aligned_cols=118 Identities=19% Similarity=0.097 Sum_probs=80.6
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHH
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+.... + ++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~------~------------~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP------A------------AR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH------H------------HH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH------h------------HH-HHHH
Confidence 678888 99999999999999999999999998765 78888877543210 0 00 0000
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
.+.+..|++.... +. +-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~~----~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---MD----GESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---CT----TCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---CC----CCCHHH
Confidence 0112234432110 00 122334
Q ss_pred hhHHHHHHHHhcCCceeEEeCC-CCCCChHHHHHHHHHHHHH
Q 046196 331 RKRLTTGEMLVGPARALFMDEI-STGLDSSTTYQIVNSLRQS 371 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEp-tsgLD~~t~~~i~~~l~~~ 371 (1436)
-+|.+++++...+++++++||| ++++|......+.+..+..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5688999988889999999999 9999988877777666543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-07 Score=114.86 Aligned_cols=166 Identities=12% Similarity=0.059 Sum_probs=89.1
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhc--CcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCC--CHHH
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAG--KLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEM--TVRE 247 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~l--TV~E 247 (1436)
.+++.+..+..++|.|++||||||+|+.|.. .+..+ .|+|.+.+.+.+..... .| . .+|.+ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el~---~~--~---~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLELS---VY--E---GIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGGG---GG--T---TCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhhh---hh--c---cCCcccceeec
Confidence 3677888999999999999999999999875 22332 46666655443321100 00 0 01111 1212
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccc--ccccCccccc
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCAD--TMVGDEMLRG 325 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d--t~vg~~~~~~ 325 (1436)
+...+.+.. .....|+. .+ ..+++..|+.+..+ ..+ ...
T Consensus 228 d~~~a~~~L-----~~~~~Eme-----------------------------rR-~~ll~~~Gv~~i~~yn~~~----~~~ 268 (512)
T 2ius_A 228 DMKDAANAL-----RWCVNEME-----------------------------RR-YKLMSALGVRNLAGYNEKI----AEA 268 (512)
T ss_dssp SHHHHHHHH-----HHHHHHHH-----------------------------HH-HHHHHHTTCSSHHHHHHHH----HHH
T ss_pred CHHHHHHHH-----HHHHHHHH-----------------------------HH-HHHHHHcCCccHHHHHHHH----HHH
Confidence 221111100 00011111 11 23566677654322 111 124
Q ss_pred CChhhhhHH----------HHHHHHhcCCc-eeEEeCCCCCCChHHHHHHHHHHHHHHHhcC--CeEEEEEecCch
Q 046196 326 ISGGQRKRL----------TTGEMLVGPAR-ALFMDEISTGLDSSTTYQIVNSLRQSIHILN--GTAVISLLQPAP 388 (1436)
Q Consensus 326 LSGGqkqRv----------sia~al~~~~~-illLDEptsgLD~~t~~~i~~~l~~~~~~~~--~t~ii~i~q~~~ 388 (1436)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++..+ |..++..+|...
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 899998863 24555667787 78999999988843 3455555655544322 455556667544
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.4e-07 Score=99.60 Aligned_cols=43 Identities=9% Similarity=0.140 Sum_probs=36.2
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHH
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQ 370 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~ 370 (1436)
|..-.++++.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4333345688999999999999999 999999999999988875
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.9e-09 Score=121.96 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=53.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCC-cCCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDL-HIGEM 243 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~-~~~~l 243 (1436)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++.+... .+.+++++|... ..+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4789999999999 99999999999999999999874 6889998866432211 122445555421 34445
Q ss_pred CHHHHH
Q 046196 244 TVRETL 249 (1436)
Q Consensus 244 TV~E~l 249 (1436)
++.|++
T Consensus 136 ~~iDei 141 (278)
T 1iy2_A 136 VFIDEI 141 (278)
T ss_dssp EEEETH
T ss_pred Eehhhh
Confidence 555555
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-08 Score=124.49 Aligned_cols=162 Identities=10% Similarity=0.077 Sum_probs=92.1
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcC--CCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCC--c----
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHV--T---- 940 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~l--T---- 940 (1436)
.+++.+.++..++|.|++||||||+++.|.. .... ..|++.+.+.+.+...+.. ....|++ +
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhh--------hccCCcccceeecC
Confidence 3678888899999999999999999999865 2221 2244554444432211111 0011111 1
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH----------HHHHHHhhCCC
Q 046196 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRL----------TIAVELVANPS 1010 (1436)
Q Consensus 941 v~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl----------~iA~aL~~~p~ 1010 (1436)
+.+....-.++ .++.+++ .+.++..|+.++.+..... ...+|+||+|+. .+|+++...|.
T Consensus 229 ~~~a~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 229 MKDAANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCc
Confidence 22211111111 1222222 3678888887654321000 013577776542 35566677888
Q ss_pred -cceeeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEecCCC
Q 046196 1011 -IIFMDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPS 1051 (1436)
Q Consensus 1011 -illlDEPTsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1051 (1436)
++++||++.-+|.. ...+.+.+.++++ .|.++|+++|+|+
T Consensus 299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 78999999988843 3445555555543 3779999999998
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.7e-08 Score=106.17 Aligned_cols=67 Identities=22% Similarity=0.138 Sum_probs=43.6
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcc---cccceEEEeecCCCCCCCCcHHH
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQE---TFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
|+++++|++++|+||||||||||+++|+|..+ .+.+++...... ..++.++|++|+...++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 56778999999999999999999999999753 355555443221 12345678888765544444433
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.2e-09 Score=118.89 Aligned_cols=47 Identities=34% Similarity=0.526 Sum_probs=42.0
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 4799999999999 99999999999999999999874 58899988654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-06 Score=102.16 Aligned_cols=42 Identities=31% Similarity=0.339 Sum_probs=33.9
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEE-EECCc
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRV-TYNGH 219 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~~G~ 219 (1436)
+=+++|+++.|.||||||||||+..+++...+. .|.| .+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E 98 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAE 98 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecc
Confidence 468999999999999999999999999887553 4555 44443
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.16 E-value=2.1e-06 Score=101.11 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999888886653
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.1e-07 Score=99.56 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=23.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh-cCcCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALA-GKLGK 206 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~~~~ 206 (1436)
+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999999 98743
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.8e-06 Score=93.23 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHH
Q 046196 999 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1037 (1436)
Q Consensus 999 l~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~ 1037 (1436)
...|++++.+|+++++| ||++|......+.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35589999999999999 99999999999998887643
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-07 Score=104.19 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=40.0
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-----------ccceEEEecCC
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-----------PQRTSAYISQN 236 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q~ 236 (1436)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... ....++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 899999999999999999999999998 899999998763211 12457888773
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.4e-06 Score=98.98 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=86.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC--------CCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHHHHHhhh
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGKD--------LKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSA 253 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~~--------~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E~l~f~~ 253 (1436)
.++|+|+||||||||++.|+|..... ...+|.|.++|.++. .-.+.|++.|.+...-+ ..+.++....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve-~f~~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVD-AFFVTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHH-HHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHH-HHHHHHHHHH
Confidence 49999999999999999999986411 024789999885431 12345555543221100 0111111110
Q ss_pred hhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhH
Q 046196 254 RCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKR 333 (1436)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR 333 (1436)
..+..-.-++ . .+++ ... .+....+..+++.+++.+..--.|+++ .--+|+|+++|
T Consensus 257 ~aD~il~VvD----~----------s~~~-~~~--------~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~ 312 (364)
T 2qtf_A 257 YSDALILVID----S----------TFSE-NLL--------IETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKK 312 (364)
T ss_dssp GSSEEEEEEE----T----------TSCH-HHH--------HHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHH
T ss_pred hCCEEEEEEE----C----------CCCc-chH--------HHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHH
Confidence 0000000000 0 0010 000 001112345677777765443344543 23478888898
Q ss_pred HHHH----HHH-hcCCceeEEeCCCCCCChHHHHHHHHHHHHHHH
Q 046196 334 LTTG----EML-VGPARALFMDEISTGLDSSTTYQIVNSLRQSIH 373 (1436)
Q Consensus 334 vsia----~al-~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~ 373 (1436)
+.++ +.+ ..++++ +|+|++|......+.+.|.+...
T Consensus 313 ~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 313 LDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8877 555 334444 89999999999999998887654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.8e-06 Score=102.58 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCC
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1051 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1051 (1436)
+++++|-.++++....|.|||+||+ ++|.|......+.+++..+- ..+..||+++|+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44777777777777777663 34678999999975
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-06 Score=101.38 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=86.0
Q ss_pred EEEEEccCCCChhHHHHhHcCCCCC---------CceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH---HHH
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKTG---------GYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE---SLV 946 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e---~l~ 946 (1436)
.++|+|++|||||||++.|+|.... ++..|.|.++|.++ .+....|++.+.+ ...|.. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCC----HHHHHHHHHHHH
Confidence 3899999999999999999996531 14578999988543 1223345544321 111211 111
Q ss_pred HHHH----hc-CC-CCCC--HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCCcce
Q 046196 947 YSAW----LR-LP-PEVD--SDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIA----VEL-VANPSIIF 1013 (1436)
Q Consensus 947 ~~~~----l~-~~-~~~~--~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA----~aL-~~~p~ill 1013 (1436)
.... +. .. .+.. ..+..+.+.++++.+++.+..--.+++. ...+|+|+++|+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 0000 00 00 1111 1223334567788877655432222222 234687888888887 444 333443
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHh
Q 046196 1014 MDEPTSGLDARAAAIVMRTVRNTVD 1038 (1436)
Q Consensus 1014 lDEPTsgLD~~~~~~i~~~l~~~~~ 1038 (1436)
+|+|++|......+.+.|.+...
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999987653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.96 E-value=6.1e-08 Score=114.97 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=80.5
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCC-CCCCCcHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDI-HSPHVTVY 942 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-~~~~lTv~ 942 (1436)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+...+.+.. .+...+|+++|... ++.+.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~~--~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPLD--RLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCTT--THHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccch--hHHHHHHHhcchhHHHHHHHHHH
Confidence 35899999999999999999999999999999999753 466654221211 11223556666543 22333322
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHH---cCCcc-cc---cccc--c--CCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMEL---VELNP-IR---EALV--G--LPGVSGLSTEQRKRLTIAVELVANPSI 1011 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~---l~l~~-~~---~~~~--g--~~~~~~LSgGqrqRl~iA~aL~~~p~i 1011 (1436)
..+. .+.... ........+...++- +.+.. .. +.+. | ......+++|+++|+..+.+++.+|++
T Consensus 229 ~~~~----r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGES----RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTTT----TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHHH----hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 1110 000000 000000112222320 00110 00 1000 0 001345899999999998888899998
Q ss_pred ce-eeCCCC
Q 046196 1012 IF-MDEPTS 1019 (1436)
Q Consensus 1012 ll-lDEPTs 1019 (1436)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 76 999997
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-06 Score=101.83 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=35.2
Q ss_pred ccccce--EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEE-EEECCcc
Q 046196 866 FLKGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGS-ITISGYP 916 (1436)
Q Consensus 866 iL~~vs--~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~-i~i~g~~ 916 (1436)
-|+.+- +-+++|+++.|.||+|+|||||+..+++... ...|. +++++..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccc
Confidence 355543 4799999999999999999999999987532 11233 4565543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.5e-07 Score=97.64 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=49.8
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc--ccceEEEecCCCCcCCCCCHHHHHHh
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV--PQRTSAYISQNDLHIGEMTVRETLAF 251 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~E~l~f 251 (1436)
....++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3556789999999999999999999999975 78899987764321 11245778887655555666666654
Q ss_pred h
Q 046196 252 S 252 (1436)
Q Consensus 252 ~ 252 (1436)
.
T Consensus 96 ~ 96 (200)
T 4eun_A 96 A 96 (200)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.7e-07 Score=101.75 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=39.3
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-----------ccccceEEEeecC
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-----------ETFARISGYCEQT 932 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~q~ 932 (1436)
++++.+ ++++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 8999999999999999999999876 458999999976521 1123557888874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=7.8e-06 Score=88.14 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHH
Q 046196 333 RLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSI 372 (1436)
Q Consensus 333 Rvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~ 372 (1436)
....|++++.+|+++++| ||++|......+++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999 99999999999998887643
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.85 E-value=8.1e-07 Score=96.30 Aligned_cols=56 Identities=23% Similarity=0.165 Sum_probs=37.7
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCccc--ccceEEEeecC
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET--FARISGYCEQT 932 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~--~~~~~gyv~q~ 932 (1436)
....++|++++|+|+||||||||+++|++.. |.+.++|.+..... .+...|+++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3556799999999999999999999999753 77888887653211 11234566654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.1e-06 Score=95.16 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=82.7
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHH
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
.-|+.+.+-++||+++.|.|++|+|||||+.-++.... . .| ..+.|+.- .++..+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEES------SSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEeC------CCCHHHH
Confidence 35777878899999999999999999999988875321 0 11 11334321 2333332
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1024 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~ 1024 (1436)
.. +.......+.+.++++ ..||.++.+|+..|...+.++++.+.|+|...+
T Consensus 90 ~~------------------Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si--- 140 (338)
T 4a1f_A 90 AL------------------RALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI--- 140 (338)
T ss_dssp HH------------------HHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH---
T ss_pred HH------------------HHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH---
Confidence 21 1111111222222222 149999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHhC--CCEEEEEec
Q 046196 1025 AAAIVMRTVRNTVDT--GRTVVCTIH 1048 (1436)
Q Consensus 1025 ~~~~i~~~l~~~~~~--g~tvi~~~H 1048 (1436)
..+...++++.++ |..+|++=|
T Consensus 141 --~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 --EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEec
Confidence 3555666666543 577777744
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.6e-05 Score=93.95 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=29.8
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 577788878777 8899999999999999999864
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.76 E-value=9.8e-06 Score=86.08 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=33.1
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 7889999999 99999999999999999999987654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.74 E-value=6.1e-06 Score=95.97 Aligned_cols=81 Identities=12% Similarity=0.007 Sum_probs=61.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc---------c---cceEEEe-cC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV---------P---QRTSAYI-SQ 235 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~---~~~~~yv-~Q 235 (1436)
+++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998775 789999877653211 0 3457888 67
Q ss_pred CCCcCCCCCHHHHHHhh
Q 046196 236 NDLHIGEMTVRETLAFS 252 (1436)
Q Consensus 236 ~~~~~~~lTV~E~l~f~ 252 (1436)
.....+..++.+++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65545555667776554
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.5e-05 Score=89.78 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=34.3
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
...-|+.+.+-++||+++.|.|+||+|||||+..++...
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345688888889999999999999999999999988764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.72 E-value=9e-06 Score=88.05 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=28.1
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
++++|++++|+|||||||||++++|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.2e-05 Score=104.53 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCCCHHHHHhhCeEEEE
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~D~v~~l 1064 (1436)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|+++ ||++. .+.+.+++.-++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 3479999999999999999999999999996 999887777777666554445677775 88764 566677654333
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.8e-06 Score=97.16 Aligned_cols=75 Identities=17% Similarity=0.076 Sum_probs=52.0
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHh---cCcCCCCCcceEEE--------ECCccCCCcc----ccceEEEe
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALA---GKLGKDLKFSGRVT--------YNGHGMEEFV----PQRTSAYI 233 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~~G~~~~~~~----~~~~~~yv 233 (1436)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.+.. ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 455544 789999999999999999999999 888777 89998 8888774321 12457777
Q ss_pred cCCC-----CcCCCCCHHHHH
Q 046196 234 SQND-----LHIGEMTVRETL 249 (1436)
Q Consensus 234 ~Q~~-----~~~~~lTV~E~l 249 (1436)
+|.+ ..++..+|.+++
T Consensus 93 ~~~~~~~~~~~l~~~~v~~~i 113 (252)
T 4e22_A 93 FVSQNGQLQVILEGEDVSNEI 113 (252)
T ss_dssp EEEETTEEEEEETTEECTTGG
T ss_pred EecCCCCceEEECCeehhHHH
Confidence 7643 233444555554
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.63 E-value=1.6e-05 Score=86.01 Aligned_cols=39 Identities=28% Similarity=0.094 Sum_probs=25.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
..+++|||+.+++|+.++|+|+|||||||+.+.|++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 458999999999999999999999999999999998763
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.63 E-value=6.4e-05 Score=89.00 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceee-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCCC
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1051 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1051 (1436)
..+|++|+|++. +.+...++-++++| +|++|+|......+.+.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 357999998876 55555677788999 99999999988888887776543 67888888 7653
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.63 E-value=1.6e-06 Score=106.47 Aligned_cols=49 Identities=35% Similarity=0.516 Sum_probs=42.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE 223 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 223 (1436)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 3689999999999 99999999999999999999864 5789999876643
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=4.5e-06 Score=90.34 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=43.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEE--EECCccCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRV--TYNGHGME 222 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~~G~~~~ 222 (1436)
.+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 446677888889999999999999999999999999986 3 5777 78876543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.57 E-value=5.9e-06 Score=92.56 Aligned_cols=40 Identities=38% Similarity=0.436 Sum_probs=36.5
Q ss_pred cceeeecceEEEeC---CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 166 PLTILHDVSGIIKP---QRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
..++|+|+|+.|++ |+.++|+|++||||||+.++|++.+.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34699999999999 99999999999999999999999764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.57 E-value=6.8e-06 Score=92.07 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=35.5
Q ss_pred eeEEecc-cceeecchhhhccCCCCccccccccceEEEeC---CeEEEEEccCCCChhHHHHhHcCCC
Q 046196 838 SITFDDI-RYALDMPQEMKAQGIPDDRLEFLKGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 838 ~i~~~~~-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++++|+ ++.++ +...+|+|+|+.+++ |+.++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4778888 76541 234699999999999 9999999999999999999999754
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.52 E-value=2.7e-05 Score=82.59 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=30.8
Q ss_pred ccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 868 ~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
+++++.+.+| +++|+||||||||||+++|.+...
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6789999999 999999999999999999987543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.51 E-value=9.8e-07 Score=108.34 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=80.9
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCccc---ccceEEEeecCCC-CCCCCc
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET---FARISGYCEQTDI-HSPHVT 940 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~---~~~~~gyv~q~~~-~~~~lT 940 (1436)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+..... ..+.+..++|... ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4789999999999 89999999999999999998753 567888886643211 1122344555432 345556
Q ss_pred HHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 046196 941 VYESLVYSAWLRLP-PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1019 (1436)
Q Consensus 941 v~e~l~~~~~l~~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTs 1019 (1436)
+.|++......+.. .....++..+.+.+++. .+||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 66655322111110 00112233333344433 2677778888888888888877 788764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.50 E-value=3e-05 Score=83.88 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.5
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
++++|++++|+||||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999864
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.49 E-value=7.4e-05 Score=97.14 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=55.7
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCC-CCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEIST-GLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTS
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcC
Confidence 3489999999999999999999999999996 9998877777766655321 1234555567787777777775
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=2.8e-05 Score=99.49 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=71.7
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCcHHHHHHH
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVTVYESLVY 947 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~ 947 (1436)
|+.+++|..++|+|++|+|||||++.|++........|+| .+|..... ...++.+++..|...+... +
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~------- 73 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-G------- 73 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-T-------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-C-------
Confidence 3467889999999999999999999999643321235666 45543321 1112223333332211110 0
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHH
Q 046196 948 SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027 (1436)
Q Consensus 948 ~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~ 1027 (1436)
....++..|+...++ .......-..+..++++| |+.|+|+.+..
T Consensus 74 ------------------------------~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 74 ------------------------------HRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ------------------------------EEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ------------------------------EEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 111111112111221 112222235677888999 99999988774
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1028 IVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1028 ~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
.+ +.+.+.+..+|+++|..+
T Consensus 118 ~~----~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 118 AW----TVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HH----HHHHHTTCCEEEEEECGG
T ss_pred HH----HHHHHccCCEEEEecCCc
Confidence 33 333335788888898755
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=3.8e-05 Score=81.60 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=30.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEEC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYN 217 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~ 217 (1436)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987542 35665543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.45 E-value=2.1e-05 Score=91.38 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=41.5
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
+++++++.+++|++++|+|+||+||||++..|++... +..|+|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3478999999999999999999999999999999764 3457888877664
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=3.2e-05 Score=83.92 Aligned_cols=71 Identities=7% Similarity=0.041 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH-HHHhhCeEEEEec
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFDAFDELLLMKR 1066 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~D~v~~l~~ 1066 (1436)
+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.++.. .+.+||+.+|..... ....+|.+++++-
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 678889999999888888765444 3355666666655555432 356888888865321 2456888888863
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.39 E-value=1.6e-05 Score=89.46 Aligned_cols=57 Identities=25% Similarity=0.165 Sum_probs=45.0
Q ss_pred eCCeEEEEEccCCCChhHHHHhHc---CCCCCCceeEEEE--------ECCccCCc----ccccceEEEeecCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYVSGSIT--------ISGYPKNQ----ETFARISGYCEQTD 933 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~q~~ 933 (1436)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8765 5689888 88876632 23445678887653
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=1.9e-05 Score=93.68 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1048 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1048 (1436)
-+..++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| .+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764333445443 44566667665555 57777766
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.38 E-value=6.2e-05 Score=81.27 Aligned_cols=38 Identities=29% Similarity=0.106 Sum_probs=24.4
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
...++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=1.2e-05 Score=86.90 Aligned_cols=50 Identities=24% Similarity=0.251 Sum_probs=40.4
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEE--EECCccC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSI--TISGYPK 917 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~~ 917 (1436)
...+.++...++|++++|+||||||||||++.|++... ..|.+ .++|.++
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 45667777789999999999999999999999998753 24665 7877543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=1.8e-05 Score=93.95 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=31.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhc--CcCCCCCcceEEE
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAG--KLGKDLKFSGRVT 215 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~ 215 (1436)
..+|+++++.++ .++|+|++|||||||+++|.| ++++. +|.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCccc
Confidence 358999999998 899999999999999999999 44544 55544
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=5e-05 Score=84.06 Aligned_cols=42 Identities=19% Similarity=0.062 Sum_probs=35.6
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 173 VSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 173 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
-++..++|++++|.|++|||||||+++|+|. .|+|.+.+++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445679999999999999999999999997 47888887654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=4.3e-05 Score=84.63 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=35.1
Q ss_pred ceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 870 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 870 vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
-++..++|++++|.|+||||||||+++|+|. .|+|.+++.|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3445579999999999999999999999986 36788888764
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.27 E-value=4.7e-05 Score=90.24 Aligned_cols=44 Identities=34% Similarity=0.336 Sum_probs=39.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY 216 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 216 (1436)
..+|+++|+.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 35899999999999999999999999999999999964 577765
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00022 Score=82.20 Aligned_cols=153 Identities=17% Similarity=0.213 Sum_probs=79.3
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
+++| .++|+|++|+|||||++.|.|.... + ..+.+. .+..+..|++.+++..+ ++.| .
T Consensus 6 ~r~~-~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~~--tTr~~~~gi~~~~~~~i---~~iD---------T 63 (301)
T 1ega_A 6 SYCG-FIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKAQ--TTRHRIVGIHTEGAYQA---IYVD---------T 63 (301)
T ss_dssp CEEE-EEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCSS--CCSSCEEEEEEETTEEE---EEES---------S
T ss_pred ccCC-EEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCCC--cceeeEEEEEEECCeeE---EEEE---------C
Confidence 3444 7999999999999999999986420 1 112221 12234567777654311 1111 0
Q ss_pred CCCCCHHHHHHHHHHHH-----HHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCcceeeCCCCCCCHHH-
Q 046196 954 PPEVDSDTRKMFVEEVM-----ELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA- 1025 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl-----~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~--~~p~illlDEPTsgLD~~~- 1025 (1436)
|. ...+.. ....+-+ ..+.-.+..-..+. ... +|.|++ .+++.+. ..|.++++ +.+|...
T Consensus 64 pG-~~~~~~-~~l~~~~~~~~~~~l~~~D~vl~Vvd--~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~ 131 (301)
T 1ega_A 64 PG-LHMEEK-RAINRLMNKAASSSIGDVELVIFVVE--GTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQE 131 (301)
T ss_dssp SS-CCHHHH-HHHHHHHTCCTTSCCCCEEEEEEEEE--TTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCC
T ss_pred cC-CCccch-hhHHHHHHHHHHHHHhcCCEEEEEEe--CCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCcc
Confidence 11 110000 0011111 11111111111111 123 899987 4566666 67889988 8899876
Q ss_pred HHHHHHHHHHHHhC-CC--EEEEEecCCCHHHHHhhCeE
Q 046196 1026 AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 1026 ~~~i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~D~v 1061 (1436)
...+.+.++++.+. |. .+.+++|+-. .+-+++|.+
T Consensus 132 ~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 132 KADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 66777888877653 43 4555666533 344444443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00037 Score=82.98 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.2
Q ss_pred hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCC
Q 046196 1007 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1051 (1436)
Q Consensus 1007 ~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1051 (1436)
.+|.+|++||+... |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888887766554 5788999999874
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00064 Score=78.92 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=33.5
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
..+-|+++.+-+++|+++.|.|+||+|||||+..++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34568888888999999999999999999999988754
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00015 Score=78.81 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=27.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999875
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00063 Score=79.96 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=28.9
Q ss_pred cccce-EEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 867 LKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 867 L~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
|+.+- +-+++|+++.|.||+|+|||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 57999999999999999999999988863
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.20 E-value=8.5e-05 Score=80.33 Aligned_cols=41 Identities=24% Similarity=0.114 Sum_probs=34.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 220 (1436)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5688999999999999999999999998765 6778776544
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=82.43 Aligned_cols=132 Identities=12% Similarity=0.145 Sum_probs=81.4
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
..-|+++.+-+++|+++.|.|++|+|||||+..++.... . +| ..+.|+.- .++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~------~g---------~~vl~~sl------E~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---D------ND---------DVVNLHSL------EMGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---T------TT---------CEEEEEES------SSCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEEC------CCCHHH
Confidence 346888888899999999999999999999888874211 0 11 12334332 133333
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1023 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~ 1023 (1436)
...- .......+.+.++.+ | ...||.++++|+..|...+.++++.+.|+|...
T Consensus 111 l~~R------------------~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NIKR------------------LIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HHHH------------------HHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HHHH------------------HHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 2211 111111111111111 0 012889999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHhC-CCE--EEEEec
Q 046196 1024 RAAAIVMRTVRNTVDT-GRT--VVCTIH 1048 (1436)
Q Consensus 1024 ~~~~~i~~~l~~~~~~-g~t--vi~~~H 1048 (1436)
...+...++++.++ |.. +|++-|
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34455666666544 666 777765
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00012 Score=77.56 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.8
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEEC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITIS 913 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~ 913 (1436)
.+|++++|+||||||||||++.|++..++ ...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeecc
Confidence 37899999999999999999999987542 245555443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00015 Score=77.95 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999999865
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00014 Score=76.48 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=31.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999874 6677777543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00093 Score=78.98 Aligned_cols=57 Identities=5% Similarity=0.108 Sum_probs=42.1
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEe-CCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEE
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMD-EISTGLDSSTTYQIVNSLRQSIHILNGTAVISL 383 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLD-EptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i 383 (1436)
..+|+||+|++. +.+...++-++++| ++.+|+|......+++.+.+... +.+++++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 358999998876 55555777889999 99999999988888877776432 44555543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00082 Score=72.64 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=35.8
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhH--HHhcccEEEec
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPET--YELFDDLILLS 401 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~--~~~~D~iivL~ 401 (1436)
.+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.+++ ..++ .++.-.+...+. ...+|.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~---~~~~-~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAE---QTAP-YTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHT---CCSS-EEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHh---cCCC-EEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999998888655443 234555555555444432 1233 344333433333 56677776663
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00085 Score=78.20 Aligned_cols=145 Identities=21% Similarity=0.205 Sum_probs=77.9
Q ss_pred ccccce-EEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHH
Q 046196 866 FLKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 866 iL~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
-|+.+- +-+++|+++.|.||+|+|||||...++.........| |. ...+.|+.-+..+ ....-
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~-------~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL-------SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC-------SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC-------CCeEEEEECCCCC----CHHHH
Confidence 345443 6799999999999999999999998875321000000 00 0123344322211 11111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH-HHHHHHHHHHHh---hCCCcceeeCCCCC
Q 046196 945 LVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTE-QRKRLTIAVELV---ANPSIIFMDEPTSG 1020 (1436)
Q Consensus 945 l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgG-qrqRl~iA~aL~---~~p~illlDEPTsg 1020 (1436)
......+ ..+. +++++.+ .+. +..+.. +.+.+..++.++ .+|+++++|+.++-
T Consensus 159 ~~~~~~~----g~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 159 ENMAKAL----GLDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHT----TCCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHh----CCCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 1111111 1111 1222211 111 113443 346677788887 57999999999986
Q ss_pred CCH--------HH----HHHHHHHHHHHHh-CCCEEEEEecC
Q 046196 1021 LDA--------RA----AAIVMRTVRNTVD-TGRTVVCTIHQ 1049 (1436)
Q Consensus 1021 LD~--------~~----~~~i~~~l~~~~~-~g~tvi~~~H~ 1049 (1436)
.+. .. ...+++.|+++++ .|++||++.|-
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 532 11 2445555666554 38999999884
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00033 Score=75.87 Aligned_cols=30 Identities=30% Similarity=0.189 Sum_probs=27.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-.+++|++++|+|+|||||||+.+.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999976
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0017 Score=74.31 Aligned_cols=70 Identities=24% Similarity=0.271 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCC---HHH
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1054 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~ 1054 (1436)
+++++.|..++.+...+|.+||+||+.+-++.. ....+...+..... .+..||+++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777788888899999999998776532 22233344433221 2356788888753 233
Q ss_pred HHhhCeE
Q 046196 1055 FDAFDEL 1061 (1436)
Q Consensus 1055 ~~~~D~v 1061 (1436)
...|++.
T Consensus 177 ~~R~~~~ 183 (297)
T 3b9p_A 177 LRRFTKR 183 (297)
T ss_dssp HHHCCEE
T ss_pred HhhCCeE
Confidence 3445543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00011 Score=93.87 Aligned_cols=49 Identities=35% Similarity=0.348 Sum_probs=35.2
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCc
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEF 224 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~ 224 (1436)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+.+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~ 51 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDY 51 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccC
Confidence 3457889999999999999999999999765431 226777 566554443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00027 Score=76.77 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.1
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998865
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00011 Score=85.04 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=29.4
Q ss_pred eeecceEEEeCCe------EEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 169 ILHDVSGIIKPQR------LTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 169 iL~~vs~~i~~G~------~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
.|++++..+..++ +++|+||||||||||+++|++.+..
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3444444444443 8999999999999999999999863
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00019 Score=89.20 Aligned_cols=43 Identities=30% Similarity=0.309 Sum_probs=37.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-EEE-ECCcc
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSG-RVT-YNGHG 220 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~~G~~ 220 (1436)
..+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 357899999999999999999999999999876 55 675 78754
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0015 Score=79.64 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=94.2
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHH
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYES 944 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~ 944 (1436)
.-|+.+.+-+++|+++.|.|++|+|||||..-++..... ..| . .+.|+.- .++..+-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g------~---------~vl~~sl------E~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL--KEG------V---------GVGIYSL------EMPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTC------C---------CEEEEES------SSCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCC------C---------eEEEEEC------CCCHHHH
Confidence 357777778999999999999999999999888753210 011 0 1222211 1222221
Q ss_pred HHH--HHHhcCCC------CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCccee
Q 046196 945 LVY--SAWLRLPP------EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFM 1014 (1436)
Q Consensus 945 l~~--~~~l~~~~------~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~--~~p~illl 1014 (1436)
..- +.....+. ..+.++. ..+.+.++.+.-.++. +-. ..++|..+- .+.++.+. .+|+++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 110 11111110 1222222 2233333333222211 111 125777765 34556665 47999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecC-----------CCH-------HHHHhhCeEEEEe
Q 046196 1015 DEPTSGLDA----------RAAAIVMRTVRNTVDT-GRTVVCTIHQ-----------PSI-------DIFDAFDELLLMK 1065 (1436)
Q Consensus 1015 DEPTsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~-----------~~~-------~~~~~~D~v~~l~ 1065 (1436)
|..+.-.+. .....+.+.|+.++++ +++||+++|- |.. .+...+|.|+.|.
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 998764332 1234677778887765 8999999983 210 2345688888886
Q ss_pred c
Q 046196 1066 R 1066 (1436)
Q Consensus 1066 ~ 1066 (1436)
+
T Consensus 397 r 397 (444)
T 2q6t_A 397 R 397 (444)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0048 Score=70.61 Aligned_cols=27 Identities=44% Similarity=0.666 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++.-++|.||||+|||||++++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999865
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.88 E-value=8e-05 Score=86.21 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=34.0
Q ss_pred cccccccceEEEeCCe------EEEEEccCCCChhHHHHhHcCCCC
Q 046196 863 RLEFLKGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge------~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
..+.|++++..+..++ ++||+||||||||||+++|.+...
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457888888887776 999999999999999999998654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00022 Score=74.94 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=29.8
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
.+|++++|+|+|||||||+++.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 478999999999999999999998753 556777644
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.005 Score=73.09 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=25.2
Q ss_pred CCe--EEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 179 PQR--LTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 179 ~G~--~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
++. .++|.||+|+|||||++.+++.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 445 89999999999999999999987653
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00058 Score=73.94 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=26.6
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+++|++++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999999999865
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0044 Score=71.28 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=40.2
Q ss_pred CChhhhhHHHHHHHHh--cCCceeEEeCCCCCCChHH-HHHHHHHHHHHHHhcCC-eEEEEEecCchhHHHhcccE
Q 046196 326 ISGGQRKRLTTGEMLV--GPARALFMDEISTGLDSST-TYQIVNSLRQSIHILNG-TAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 326 LSGGqkqRvsia~al~--~~~~illLDEptsgLD~~t-~~~i~~~l~~~~~~~~~-t~ii~i~q~~~~~~~~~D~i 397 (1436)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++....+. .++.+..+....+.+++|.|
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 5566666 78889998 7899876 56677777776543332 23332233344444455543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00061 Score=69.94 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=24.5
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 202 (1436)
+.++.+.+| +++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555555 999999999999999999974
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00041 Score=72.60 Aligned_cols=27 Identities=37% Similarity=0.547 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.|++++|+|||||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00056 Score=70.22 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=24.1
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHc
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344556665 89999999999999999986
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00021 Score=77.17 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=31.9
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
..++|++++|+|+||||||||++.|++... +..|.|.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEecc
Confidence 357899999999999999999999998653 22456655443
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00061 Score=82.89 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=47.6
Q ss_pred hCCCcceeeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEE-EecCcEEEEEcCCC
Q 046196 1007 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL-MKRGGEEIYVGPLG 1077 (1436)
Q Consensus 1007 ~~p~illlDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~-l~~Gg~~~y~G~~~ 1077 (1436)
.+|++||+||+..-.+. .+...+...+..+.+.|+.||+++|.+..++....+++.- +. .|.++..+|+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887764 6777888888888778899999999864322111122211 22 35666667664
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00022 Score=83.78 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=41.3
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH 219 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~ 219 (1436)
.+++++++.+++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~ 92 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAV 92 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEee
Confidence 4778888889999999999999999999999999988664 566665443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0041 Score=72.34 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=30.2
Q ss_pred eeecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 169 ILHDVS-GIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 169 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 455543 679999999999999999999999998753
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0031 Score=75.83 Aligned_cols=37 Identities=30% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG 218 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 218 (1436)
++.+++++||+||||||++..|++.+.+. .++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 68999999999999999999999988664 56665543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0019 Score=77.71 Aligned_cols=27 Identities=37% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
++.+++++|++|+||||++..|++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999997543
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00055 Score=73.50 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=25.3
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
.+|++++|+||||||||||++.|++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998653
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00036 Score=82.77 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.9
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999754
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00058 Score=80.40 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=34.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
+++..++|+|+||||||||++.|+|.+.+. +|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 467899999999999999999999987765 67887766543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=75.37 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.3
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.++++.-+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788899999999999999999999754
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0087 Score=70.15 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=29.9
Q ss_pred eeecce-EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 169 ILHDVS-GIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 169 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 57999999999999999999999999875
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00036 Score=86.75 Aligned_cols=42 Identities=38% Similarity=0.540 Sum_probs=34.2
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE-EEE-ECCcc
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG-SIT-ISGYP 916 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 916 (1436)
.+++|++++|+|+||||||||+++|+|+..+ ..| ++. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4789999999999999999999999998652 344 574 77753
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00064 Score=82.65 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=39.0
Q ss_pred cCCceeEEeCCCCCCCh-HHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE-ecCCeEEEecCh
Q 046196 342 GPARALFMDEISTGLDS-STTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL-LSDGQIVYQGPR 411 (1436)
Q Consensus 342 ~~~~illLDEptsgLD~-~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv-L~~G~iv~~G~~ 411 (1436)
.++++|++||+..-.+. .+...++..+..+.. .+..+|++.+.+..++..+.+++.- +..|.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 37899999999887765 566777788776543 3445555433333332222222222 344555555444
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0007 Score=71.43 Aligned_cols=39 Identities=31% Similarity=0.303 Sum_probs=31.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce--EEEECCcc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSG--RVTYNGHG 220 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~ 220 (1436)
++|++++|+|++||||||+.+.|++.+.+ .| .|.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChH
Confidence 47999999999999999999999998744 24 56666543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0011 Score=73.08 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=27.8
Q ss_pred eeecceEEEe---CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 169 ILHDVSGIIK---PQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 169 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3778888776 9999999999999999999999998753
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.00097 Score=69.71 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
.|++++|+|+||||||||+++|++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.003 Score=66.05 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.4
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999864
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.00074 Score=84.34 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=39.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG 218 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 218 (1436)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 3567777777 89999999999999999999999998765 67776655
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.00074 Score=73.43 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=35.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce--EEEECCcc
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSG--RVTYNGHG 220 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~ 220 (1436)
.+++|.+++|+|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 35689999999999999999999999988754 57 77777643
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.00055 Score=81.00 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=28.6
Q ss_pred cccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 863 RLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 345788998877 999999999999999998864
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.00082 Score=78.43 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=30.5
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
|+++.+.+|+.++|+||+|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999874
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00043 Score=81.26 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=34.9
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
..+++++++.+++|.+++|+|++|||||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999864
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0036 Score=65.47 Aligned_cols=27 Identities=37% Similarity=0.569 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999874
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.011 Score=67.74 Aligned_cols=29 Identities=41% Similarity=0.505 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
|...+++.||||+||||+.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45689999999999999999999987553
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0016 Score=77.09 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
++++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999987643
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0015 Score=76.19 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=41.2
Q ss_pred hhhcccCCCCCcceeee--------------cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 155 NYLHVLPSRKKPLTILH--------------DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 155 ~~~~~~~~~~~~~~iL~--------------~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+.++.+.+...+..|+ |+++.+.+|+.++|+||+|+|||||++.|++.+
T Consensus 135 ~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 135 LFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34444555555556788 899999999999999999999999999999875
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.016 Score=64.01 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5799999999999999999997554
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0034 Score=66.77 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=21.0
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
+++++|+..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 789999998887 5689999999999999999974
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0041 Score=75.61 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC----C-----CCcceEEEECCccC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGK----D-----LKFSGRVTYNGHGM 221 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~----~-----~~~~G~V~~~G~~~ 221 (1436)
-.++|+|+||+|||||++.|+|.... . ...+|.+.++|+++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 47999999999999999999998531 0 02378999999754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0016 Score=69.86 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=30.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47889998888885 689999999999999999874
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.003 Score=68.33 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=24.5
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
+.++.+.+ .+++|+|||||||||++.+|.-.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555 49999999999999999998643
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0026 Score=68.75 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=23.9
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHc
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 345556665 99999999999999999885
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0041 Score=75.61 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=30.3
Q ss_pred EEEEEccCCCChhHHHHhHcCCCC------C----CceeEEEEECCcc
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKT------G----GYVSGSITISGYP 916 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~------~----~~~~G~i~i~g~~ 916 (1436)
.++|+|+||+|||||++.|+|... + .+..|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999642 1 1356889898865
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0042 Score=66.03 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999998887 6789999999999999999874
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0062 Score=73.93 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=30.4
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 35777777899999999999999999999887764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0032 Score=66.78 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=26.5
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999876
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0026 Score=69.60 Aligned_cols=37 Identities=32% Similarity=0.331 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTY 216 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 216 (1436)
+..++|+|||||||||+.+.|++.+.-....+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999876321111566655
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0026 Score=68.18 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=31.1
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+++++|+..+++. ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 48899999888884 789999999999999999874
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0032 Score=66.23 Aligned_cols=40 Identities=28% Similarity=0.196 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 220 (1436)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865432224777776654
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0027 Score=68.56 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999988763
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0032 Score=69.46 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=26.5
Q ss_pred cccceEEEe---CCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 867 LKGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 867 L~~vs~~i~---~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
|.++++++. +|.+++|.|++||||||+++.|+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 667777776 999999999999999999999998654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0016 Score=76.71 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=31.1
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
+++.+++|+|++|||||||++.|+|... +..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeec
Confidence 4678999999999999999999998653 234666665544
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0012 Score=73.01 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAF 1058 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1058 (1436)
+.|.-.+.. ...+.+-+++++||+-. ++|.......++.+.+....-+++++++--+.....+.|
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 456555543 33578899999999965 687776654444444433333466666544443333344
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0011 Score=73.27 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=38.4
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCC-CCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhccc
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEIST-GLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 396 (1436)
.|.-.+.. ...+.+-+++++||+-. ++|.......++.+..... ...+++++.+.+.+...+++++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 34444432 33478889999999976 6877766555555444321 1234555556666555555543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0029 Score=75.88 Aligned_cols=46 Identities=24% Similarity=0.077 Sum_probs=39.6
Q ss_pred ecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 171 HDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 171 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 677777 89999999999999999999999999875 78888766543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0028 Score=67.19 Aligned_cols=31 Identities=42% Similarity=0.509 Sum_probs=27.3
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
.++|.++.|+|++||||||+.+.|++.+.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3478999999999999999999999987653
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.066 Score=62.83 Aligned_cols=35 Identities=37% Similarity=0.442 Sum_probs=28.9
Q ss_pred eecce--EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 170 LHDVS--GIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 170 L~~vs--~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
|+.+- +-+++|+++.|.||||+|||||...++...
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44432 458899999999999999999999887654
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.031 Score=64.80 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=28.5
Q ss_pred ccccce-EEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 866 FLKGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 866 iL~~vs-~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345444 6799999999999999999999988774
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.009 Score=70.23 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=28.4
Q ss_pred ccccce--EEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 866 FLKGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 866 iL~~vs--~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455543 4689999999999999999999988774
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0022 Score=79.98 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=40.1
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
..+++++++.+ +|+.++|+||||+|||||+++|++... +..|.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 34678888888 899999999999999999999998764 45677776664
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0081 Score=68.16 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.8
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566678999999999999999998754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0048 Score=73.17 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=26.1
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 173 VSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 173 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3445678889999999999999999999987
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0015 Score=77.17 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=35.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 34678888877 999999999999999998864332 344433333221110011234444443333345666
Q ss_pred HHHHh
Q 046196 247 ETLAF 251 (1436)
Q Consensus 247 E~l~f 251 (1436)
|+.-+
T Consensus 101 DTpG~ 105 (361)
T 2qag_A 101 DTPGY 105 (361)
T ss_dssp C----
T ss_pred Eeccc
Confidence 66544
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.01 Score=64.97 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=42.0
Q ss_pred CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CCCHHHHHhhCeEEEEe
Q 046196 1008 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1008 ~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~D~v~~l~ 1065 (1436)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| .++.++.+.+|+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 45566777777999999999 55677888999999875
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.023 Score=68.97 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=33.2
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
..-|+.+.+-+++|+++.|.|+||+|||||+..++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578877789999999999999999999999988764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0021 Score=73.69 Aligned_cols=46 Identities=26% Similarity=0.140 Sum_probs=38.1
Q ss_pred ec-ceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 046196 171 HD-VSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220 (1436)
Q Consensus 171 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 220 (1436)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 777776 9999999999999999999999998764 6777765543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0036 Score=70.12 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=32.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 456788999999999999999999998764 24566777544
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0015 Score=76.08 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=33.0
Q ss_pred eeecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcC
Q 046196 169 ILHDVSGIIKPQRL--TLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 169 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
++++++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 67778888888888 99999999999999999999864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0047 Score=64.97 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.3
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999864
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0097 Score=63.80 Aligned_cols=113 Identities=14% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~ 955 (1436)
+..-+.|.||+|+|||||+++|+.... .....+.+ .+..+.+.-........
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~ 104 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLI--------------------------VYVPELFRELKHSLQDQ 104 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEE--------------------------EEHHHHHHHHHHC---C
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEE--------------------------EEhHHHHHHHHHHhccc
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC--CCCCCHHHHHHHHHHH
Q 046196 956 EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIVMRTV 1033 (1436)
Q Consensus 956 ~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP--TsgLD~~~~~~i~~~l 1033 (1436)
.. .+.++.+ .++++|++||+ ...-|......+..++
T Consensus 105 ~~---------~~~~~~~---------------------------------~~~~~lilDei~~~~~~~~~~~~ll~~~l 142 (202)
T 2w58_A 105 TM---------NEKLDYI---------------------------------KKVPVLMLDDLGAEAMSSWVRDDVFGPIL 142 (202)
T ss_dssp CC---------HHHHHHH---------------------------------HHSSEEEEEEECCC---CCGGGTTHHHHH
T ss_pred hH---------HHHHHHh---------------------------------cCCCEEEEcCCCCCcCCHHHHHHHHHHHH
Q ss_pred HHHHhCCCEEEEEecCCCHHHHHhh
Q 046196 1034 RNTVDTGRTVVCTIHQPSIDIFDAF 1058 (1436)
Q Consensus 1034 ~~~~~~g~tvi~~~H~~~~~~~~~~ 1058 (1436)
......+..+|++++.+..++...+
T Consensus 143 ~~~~~~~~~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 143 QYRMFENLPTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp HHHHHTTCCEEEEESSCHHHHHHHS
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHH
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.005 Score=67.35 Aligned_cols=56 Identities=23% Similarity=0.103 Sum_probs=37.1
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCCCC-CceeEEEEE--------CCccCCc----ccccceEEEeecC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYVSGSITI--------SGYPKNQ----ETFARISGYCEQT 932 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~q~ 932 (1436)
+.+++|+|+|||||||+.+.|++.... -+..|++.. +|.++.. ..+.+.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 568999999999999999999975411 134577665 5655431 1233445666664
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.046 Score=60.25 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.1
Q ss_pred hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEec
Q 046196 1007 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1048 (1436)
Q Consensus 1007 ~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1048 (1436)
.+|+++++..+.+.++......+...++.... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999999888888766665555443322 1258888888
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0053 Score=66.17 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.1
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4588999999999999999999998654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.006 Score=64.65 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.0
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46778888999999999999999999999864
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.013 Score=60.57 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999964
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.014 Score=60.21 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0032 Score=68.38 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=31.8
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeE--EEEECC
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSG--SITISG 914 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G--~i~i~g 914 (1436)
.+++|.+++|+|++||||||+.+.|++... +..| .+.++|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 356899999999999999999999998653 2345 666664
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.021 Score=66.09 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.1
Q ss_pred hhCCCcceeeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 046196 1006 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1050 (1436)
Q Consensus 1006 ~~~p~illlDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1050 (1436)
..++++||+||+-. .-|..+...+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999865 2344677888888888777777777777754
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0089 Score=66.81 Aligned_cols=45 Identities=33% Similarity=0.524 Sum_probs=30.1
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 220 (1436)
.++++++..++| ++|.||||+|||||+++|++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 355666656555 8899999999999999999986532 25566543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.043 Score=62.13 Aligned_cols=28 Identities=43% Similarity=0.661 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++.-++|.||+|+|||||+++++..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4566799999999999999999998753
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.013 Score=67.85 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
++..+.|.||+|+|||||+++|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 345788999999999999999998764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0079 Score=64.60 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 046196 182 LTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G 202 (1436)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0095 Score=62.83 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.044 Score=64.46 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.8
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678899999999999999998653
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0031 Score=73.37 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=33.6
Q ss_pred cccccceEEEeCCeE--EEEEccCCCChhHHHHhHcCCC
Q 046196 865 EFLKGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~--~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+++.+++.+++|+. ++|+|++||||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999998 9999999999999999999854
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=62.02 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0069 Score=65.04 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.018 Score=60.51 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.018 Score=68.01 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.1
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456678999999999999999998643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0096 Score=70.57 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=33.3
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcCCCC---------CCceeEEEEECCc
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYVSGSITISGY 915 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~---------~~~~~G~i~i~g~ 915 (1436)
+.++.|..++|+|+||+|||||++.|+|... -.+..|.+.+.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999999621 1245688877664
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.038 Score=60.35 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEe---------cCchhHHHhcccEEEec
Q 046196 343 PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLL---------QPAPETYELFDDLILLS 401 (1436)
Q Consensus 343 ~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~---------q~~~~~~~~~D~iivL~ 401 (1436)
+++++++||.-. |+.. +++.++.++. .+.++|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 579999999964 6643 4455566554 3445555433 45788999999999875
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.011 Score=61.89 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.0094 Score=61.81 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987753
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0087 Score=64.28 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.12 Score=63.89 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=29.1
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
-|+.+.+-+.+|+++.|.|++|+|||||..-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4666666799999999999999999999877763
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.0043 Score=72.63 Aligned_cols=41 Identities=29% Similarity=0.546 Sum_probs=35.8
Q ss_pred ceeeecceEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 167 LTILHDVSGIIKPQRL--TLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
..+++.++..++.|++ +++.||||+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3478888888899998 9999999999999999999987543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.015 Score=61.49 Aligned_cols=27 Identities=44% Similarity=0.604 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.014 Score=61.42 Aligned_cols=38 Identities=34% Similarity=0.337 Sum_probs=28.3
Q ss_pred eEEEEEccCCCChhHHHHhHcCCCC-CCceeEEEEECCc
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRKT-GGYVSGSITISGY 915 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 915 (1436)
.+++|+|+||||||||++.|.+... .+..-|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987532 1223467776654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.013 Score=64.63 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.007 Score=72.60 Aligned_cols=46 Identities=24% Similarity=0.115 Sum_probs=36.8
Q ss_pred ccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 868 KGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 868 ~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
+++++. +|++++++|+||+||||++..|++.... ..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 567777 8999999999999999999999987542 356777766543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.0079 Score=67.26 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=34.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
++++.+ ..+++.++.|+|++||||||+.+.|+.... .+.+.++|.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecH
Confidence 444444 567889999999999999999999997653 134666664
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.014 Score=64.39 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=24.8
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999865
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.019 Score=60.60 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987653
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.16 Score=59.73 Aligned_cols=27 Identities=37% Similarity=0.624 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++..-++|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 455678999999999999999998865
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.38 E-value=0.006 Score=69.96 Aligned_cols=46 Identities=26% Similarity=0.160 Sum_probs=34.8
Q ss_pred cc-ceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 868 KG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 868 ~~-vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
++ +++..+ |++++++|++|+||||++..|++... ...|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 45 677766 99999999999999999999998653 223556655443
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.02 Score=65.31 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=28.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNG 218 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 218 (1436)
++|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3568999999999999999999987653 24556665
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.019 Score=60.75 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=25.1
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|.++.|+|++||||||+.+.|++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999764
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.016 Score=64.82 Aligned_cols=25 Identities=40% Similarity=0.695 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.16 Score=58.69 Aligned_cols=119 Identities=23% Similarity=0.284 Sum_probs=0.0
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC-CCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~-~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
.|..-+.|.||+|+|||||.+.++... . ..-+.+++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~-------------------------------------- 80 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSS-------------------------------------- 80 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECC--------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhH--------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC-------CCCCCHHHH
Q 046196 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAA 1026 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEP-------TsgLD~~~~ 1026 (1436)
.+....+| ...+.-|-.+..+-..+|.|||+||. ..+......
T Consensus 81 -----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (322)
T 1xwi_A 81 -----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR 130 (322)
T ss_dssp -----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH
T ss_pred -----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH
Q ss_pred HHHHHHHHHH-----HhCCCEEEEEecCC---CHHHHHhhCeEEEEe
Q 046196 1027 AIVMRTVRNT-----VDTGRTVVCTIHQP---SIDIFDAFDELLLMK 1065 (1436)
Q Consensus 1027 ~~i~~~l~~~-----~~~g~tvi~~~H~~---~~~~~~~~D~v~~l~ 1065 (1436)
..+.+.+..+ ...+..||.++..| +..+...||+++.+.
T Consensus 131 ~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~ 177 (322)
T 1xwi_A 131 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIP 177 (322)
T ss_dssp HHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECC
T ss_pred HHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeC
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.019 Score=60.54 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.0065 Score=71.07 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=34.6
Q ss_pred cccccccceEEEeCCeE--EEEEccCCCChhHHHHhHcCCC
Q 046196 863 RLEFLKGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 863 ~~~iL~~vs~~i~~Ge~--~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
...+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34588888889999998 9999999999999999999864
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.023 Score=60.81 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999876
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.021 Score=60.09 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.085 Score=72.88 Aligned_cols=30 Identities=37% Similarity=0.446 Sum_probs=27.7
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999988654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.022 Score=59.98 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.022 Score=65.37 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=26.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.++++.-++|.||||+|||||.++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 356788999999999999999999999763
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.024 Score=59.67 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.054 Score=63.80 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
+++|+++.|.|++|+|||||...++..... .-..-++++..........+..|.-.++-.+....|+.+.+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l-------- 141 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQAL-------- 141 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH--------
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHH--------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCCcceeeCCCCCC----------
Q 046196 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL---------- 1021 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~--~~p~illlDEPTsgL---------- 1021 (1436)
.+++.++ .+++++++|..++=.
T Consensus 142 ----------------------------------------------~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 142 ----------------------------------------------EIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp ----------------------------------------------HHHHHHHTTTCCSEEEEECTTTCCCSTTC-----
T ss_pred ----------------------------------------------HHHHHHHhcCCCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HhCCCEEEEEec
Q 046196 1022 DA---RAAAIVMRTVRNT----VDTGRTVVCTIH 1048 (1436)
Q Consensus 1022 D~---~~~~~i~~~l~~~----~~~g~tvi~~~H 1048 (1436)
|. ..++.+.+.++++ .+.+++||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.024 Score=58.62 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 046196 182 LTLLLGPPSSGKTTLLLAL 200 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L 200 (1436)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.028 Score=60.42 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999987654
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.019 Score=61.55 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.9
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
..+++|+|++||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998653
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.076 Score=59.06 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRL 953 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~ 953 (1436)
+++..-+.|.||+|+|||||.+.++.... .--+.+++.......
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~~~-------------------------------- 79 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVEVI-------------------------------- 79 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSSSS--------------------------------
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHhhc--------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC-----------C
Q 046196 954 PPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL-----------D 1022 (1436)
Q Consensus 954 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgL-----------D 1022 (1436)
.-.+..+.+-.+..+.-..|.+|++||.-.=. +
T Consensus 80 ------------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 123 (262)
T 2qz4_A 80 ------------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123 (262)
T ss_dssp ------------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------
T ss_pred ------------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc
Q ss_pred HHHHHHHHHHHHHHHh----CCCEEEEEecCCC---HHHHH--hhCeEEEEe
Q 046196 1023 ARAAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDIFD--AFDELLLMK 1065 (1436)
Q Consensus 1023 ~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~~~--~~D~v~~l~ 1065 (1436)
......+.+.+..+.. .+..+|+++..+. ..+.. .||+.+.+.
T Consensus 124 ~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp ---CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.027 Score=58.73 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G 202 (1436)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.021 Score=60.93 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998763
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.021 Score=59.51 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999988754
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=93.88 E-value=0.025 Score=59.37 Aligned_cols=26 Identities=46% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+..+.|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.028 Score=59.64 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.027 Score=58.83 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.029 Score=60.31 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998764
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.084 Score=63.96 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=32.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44577777779999999999999999999998887643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.021 Score=59.62 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998765
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.025 Score=60.03 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999976653
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.026 Score=58.38 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+++|+|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.70 E-value=0.024 Score=62.55 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.8
Q ss_pred EeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 874 FRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 874 i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999864
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=93.68 E-value=0.033 Score=60.44 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G 202 (1436)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1436 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-21 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-24 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-17 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-15 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-26 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-19 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-17 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-14 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-20 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-15 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-24 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-24 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-15 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-22 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-16 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-14 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 0.003 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (277), Expect = 2e-27
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 18/213 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
L GVS + G +T ++G +G+GK+TL++V+ G + G V + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMF----------VEEVMELVE 974
QT +TV E+L+ ++S K + +++E ++
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 975 LNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1034
L+ + + G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 1035 NTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
G T + H+ + + D L +M G
Sbjct: 195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 94.3 bits (234), Expect = 1e-21
Identities = 57/254 (22%), Positives = 94/254 (37%), Gaps = 35/254 (13%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
L VS + +TL++GP SGK+TL+ + G L D GRV + + P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 227 ----QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD 282
Q + EMTV E L C G P + + ++ ++
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE---- 129
Query: 283 IDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG 342
KA + L+ L L D G+ +SGGQ K + G L+
Sbjct: 130 -----KAFKI------------LEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402
+ + MDE G+ + I N + + G + + D L ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 403 GQIVYQGPRENVLE 416
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 109 bits (274), Expect = 3e-27
Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 13/203 (6%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARI 925
+ ++ + G L+G SG GKTT + ++AG + G I R
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRN 79
Query: 926 SGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL 985
Q+ PH+TVYE++ + ++ + D V EL+++ +
Sbjct: 80 ISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-- 134
Query: 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVV 1044
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ T +
Sbjct: 135 ---AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 191
Query: 1045 CTIHQPSIDIFDAFDELLLMKRG 1067
H + D + +M RG
Sbjct: 192 YVTHDQV-EAMTMGDRIAVMNRG 213
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 100 bits (250), Expect = 5e-24
Identities = 51/270 (18%), Positives = 95/270 (35%), Gaps = 52/270 (19%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
T ++ ++ IK +LLGP GKTT L +AG GR+ + + P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 227 Q-RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
+ R + + Q+ MTV E +AF + + ++
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD-------EIDKRV----------- 117
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
+ ++L +E + +SGGQR+R+ +V
Sbjct: 118 ----------------RWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 346 ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405
L MDE + LD+ + +++ + I + E + D + +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 406 VYQGPRENVLEFFERMGFKCPERKGVADFL 435
+ G V + P VA F+
Sbjct: 216 LQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (273), Expect = 4e-27
Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 12/219 (5%)
Query: 855 KAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS-GSIT 911
K + ++ + LK V+ + G ++MG SG+GK+T+++++ + T G V +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 912 ISGYPKNQETFARIS--GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEV 969
+ ++ T R G+ Q P +T E++ + + + R+ E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 970 MELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1029
+++ EL E + LS Q++R+ IA L NP II D+PT LD++ +
Sbjct: 129 LKMAEL----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 1030 MRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
M+ ++ + G+TVV H I++ + ++ +K G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 79.5 bits (196), Expect = 6e-17
Identities = 42/257 (16%), Positives = 87/257 (33%), Gaps = 47/257 (18%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220
++ + L +V+ IK ++GP SGK+T+L + G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 221 M-----EEFVPQRTS--AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREK 273
+E R ++ Q I +T E + + G +S E+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG-------AMSGEER 121
Query: 274 AANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKR 333
++ + E+ +SGGQ++R
Sbjct: 122 RKRA---------LECLKMAELEERFANHKP-------------------NQLSGGQQQR 153
Query: 334 LTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL 393
+ L + D+ + LDS T +I+ L++ ++ +G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 394 FDDLILLSDGQIVYQGP 410
+ +I L DG++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (270), Expect = 1e-26
Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 13/204 (6%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFAR 924
+KG+ G + L+G +GAGKTT + +AG R G + +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMEL-VELNPIREALV 983
+ P +TVYE+L+ A+ R E K +E + L L + L
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKE----GIKRDLEWIFSLFPRLKERLKQLG 137
Query: 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1043
G LS +++ L I L++ P ++ MDEP+ GL + V ++ G T+
Sbjct: 138 G-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 1044 VCTIHQPSIDIFDAFDELLLMKRG 1067
+ +++ G
Sbjct: 193 LLVEQNAL-GALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 73.8 bits (181), Expect = 6e-15
Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 42/251 (16%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD-LKFSGRVTYNGHGMEEFV 225
+ + + + ++ L+G +GKTT L A+AG + K + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 226 PQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
+ A + + E+TV E L A + + E ++ P
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK-----RDLEWIFSLFP------ 127
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
L+ + G +SGG+++ L G L+ +
Sbjct: 128 -----------------------RLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 346 ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405
L MDE S GL ++ +++ GT ++ + Q A ++ +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 406 VYQGPRENVLE 416
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 106 bits (267), Expect = 7e-26
Identities = 42/237 (17%), Positives = 91/237 (38%), Gaps = 29/237 (12%)
Query: 841 FDDIRYALDMPQEMKAQGIPDDRLEF----------LKGVSGAFRPGVLTALMGVSGAGK 890
F ++ + + ++ + F LK ++ G + A+ G +G+GK
Sbjct: 16 FGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGK 75
Query: 891 TTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAW 950
T+L+ ++ G G I SG R+ +C Q P T+ E++++
Sbjct: 76 TSLLMLILGELE--ASEGIIKHSG---------RV-SFCSQFSWIMPG-TIKENIIFGVS 122
Query: 951 LRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPS 1010
E + + ++ + ++G G LS QR R+++A + +
Sbjct: 123 YD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDAD 178
Query: 1011 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ +D P LD V + + +T + + + A D++L++ +G
Sbjct: 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH-LRKA-DKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.7 bits (217), Expect = 3e-19
Identities = 53/331 (16%), Positives = 100/331 (30%), Gaps = 88/331 (26%)
Query: 86 LIERLLKIAEEDNEKFLLKLKDRIERVGLDIPTIEVRFEHLNVEAEAYIGSRALPTVFNS 145
++E + EE + L K++ V F HL +
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGN-------------- 49
Query: 146 CANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205
+L +++ I+ + + G SGKT+LL+ + G+L
Sbjct: 50 ----------------------PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 87
Query: 206 KDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVL 265
G + ++G ++ SQ I T++E + F
Sbjct: 88 AS---EGIIKHSGR----------VSFCSQFS-WIMPGTIKENIIFGVSYDEY------- 126
Query: 266 QELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325
KA ++ I +T++G+ +
Sbjct: 127 -RYKSVVKACQLQ--------------------------QDITKFAEQDNTVLGEGGVT- 158
Query: 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQ 385
+SGGQR R++ + A +D LD T Q+ S ++ I L+
Sbjct: 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC--KLMANKTRI-LVT 215
Query: 386 PAPETYELFDDLILLSDGQIVYQGPRENVLE 416
E D +++L G + G +
Sbjct: 216 SKMEHLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (261), Expect = 2e-25
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 13/203 (6%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQET--FAR 924
LKG+S G + L+G +GAGKTT + +++ SG +T+ G +E +
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRK 75
Query: 925 ISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVG 984
+ Y + ++ E L + A S + VE E+ L + V
Sbjct: 76 LISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV- 131
Query: 985 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1044
S S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++
Sbjct: 132 ----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 187
Query: 1045 CTIHQPSIDIFDAFDELLLMKRG 1067
+ H ++ D + L+ G
Sbjct: 188 VSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 81.2 bits (200), Expect = 2e-17
Identities = 54/275 (19%), Positives = 91/275 (33%), Gaps = 54/275 (19%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
IL +S I+ + L+GP +GKTT L ++ + SG VT G + E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 227 Q--RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
+ + +Y+ + M E L F A E
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE-------IEEMV---------- 114
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
+ +I GL V S G ++L L+
Sbjct: 115 -----------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 345 RALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404
R +DE ++GLD ++ L+Q T ++S E L D + L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLTILVSSHNM-LEVEFLCDRIALIHNGT 210
Query: 405 IVYQGPRENVLEFFERMGFKCPERKGVADFLQEVT 439
IV G E + + + + + + +EV
Sbjct: 211 IVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 103 bits (257), Expect = 2e-25
Identities = 35/187 (18%), Positives = 77/187 (41%), Gaps = 16/187 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
L+ ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 927 GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLP 986
+ + I ++V + L A L K + + +E VE+ +++
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK----- 122
Query: 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1045
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 1046 TIHQPSI 1052
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 71.5 bits (175), Expect = 1e-14
Identities = 34/215 (15%), Positives = 73/215 (33%), Gaps = 48/215 (22%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
+L ++ I+ + GP GKTTLL ++ L G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 228 RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIM 287
++ + + +++V + L A GV + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 288 KAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARAL 347
L+ + + L +S G +R+ L+ A
Sbjct: 111 -----------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 348 FMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVIS 382
+D+ +D + ++++ S+ + I G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 102 bits (255), Expect = 1e-24
Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 18/220 (8%)
Query: 855 KAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG 914
K ++ L VS G + ++G SGAGK+TL+ + + GS+ + G
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDG 66
Query: 915 Y------PKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEE 968
R G Q TV+ ++ L D K V E
Sbjct: 67 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTE 123
Query: 969 VMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1028
++ LV L ++ S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 124 LLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1029 VMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
++ +++ G T++ H+ + + D + ++ G
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 89.2 bits (221), Expect = 3e-20
Identities = 44/262 (16%), Positives = 91/262 (34%), Gaps = 49/262 (18%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH- 219
+ + L++VS + ++ ++G +GK+TL+ + G V +G
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 220 -----GMEEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKA 274
E +R I Q+ + TV +A + +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 121
Query: 275 ANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRL 334
+L ++GL D+ + +SGGQ++R+
Sbjct: 122 TE---------------------------LLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 335 TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELF 394
L + L DE ++ LD +TT I+ L + I+ G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRIC 208
Query: 395 DDLILLSDGQIVYQGPRENVLE 416
D + ++S+G+++ Q V
Sbjct: 209 DCVAVISNGELIEQDTVSEVFS 230
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (256), Expect = 1e-24
Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 32/242 (13%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
LKGVS R G + +++G SG+GK+T + + + G+I ++G N
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQ 75
Query: 927 ----------------GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVM 970
Q H+TV E+++ + L + + + +
Sbjct: 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERALKYL 133
Query: 971 ELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1030
V ++ A P LS Q++R++IA L P ++ DEPTS LD V+
Sbjct: 134 AKVGIDE--RAQGKYP--VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 189
Query: 1031 RTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG-------GEEIYVGPLGRHCSQL 1083
R ++ + G+T+V H+ ++ + +G E+++ P Q
Sbjct: 190 RIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQF 248
Query: 1084 IK 1085
+K
Sbjct: 249 LK 250
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 75.6 bits (186), Expect = 2e-15
Identities = 47/286 (16%), Positives = 91/286 (31%), Gaps = 66/286 (23%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
+L VS + + ++G SGK+T L + G + NG +
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRD 71
Query: 227 Q----------------RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSR 270
+ + Q+ MTV E + + +++
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD------A 125
Query: 271 REKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330
RE+A L +G++ A + +SGGQ
Sbjct: 126 RERALKY---------------------------LAKVGIDERAQ----GKYPVHLSGGQ 154
Query: 331 RKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPET 390
++R++ L L DE ++ LD +++ ++Q G ++ +
Sbjct: 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFA 212
Query: 391 YELFDDLILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFLQ 436
+ +I L G+I +G E V F P+ + FL+
Sbjct: 213 RHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 101 bits (254), Expect = 2e-24
Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 35/245 (14%)
Query: 832 LPFEPHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKT 891
+ + I D + + D+ LK ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQY-----------NDNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 892 TLMDVLAGRKTGGYVSGSITISGYP---KNQETFARISGYCEQTDIHSPHVTVYESLVYS 948
TL++++ SG I I G+ + G Q D TV E++
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENI--- 112
Query: 949 AWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL-VGLPGVSG-----LSTEQRKRLTIA 1002
L +D V E ++ + L G G LS Q++RL+IA
Sbjct: 113 ---LLGRPTATDEE---VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166
Query: 1003 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELL 1062
+ NP I+ +DE TS LD + +I+ + + RT + H+ S I A D+++
Sbjct: 167 RIFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLST-ITHA-DKIV 223
Query: 1063 LMKRG 1067
+++ G
Sbjct: 224 VIENG 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.9 bits (231), Expect = 2e-21
Identities = 52/258 (20%), Positives = 96/258 (37%), Gaps = 45/258 (17%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220
+ P IL D++ I+ +G GK+TL+ + SG++ +GH
Sbjct: 27 NDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHN 81
Query: 221 MEEFVPQ--RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIK 278
+++F+ R + Q D + TV+E + G +E+ K AN
Sbjct: 82 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAH 134
Query: 279 PDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGE 338
I+ L DT VG E +SGGQ++RL+
Sbjct: 135 DF--------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIAR 167
Query: 339 MLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398
+ + L +DE ++ LD + I +L + + ++ T D ++
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIV 223
Query: 399 LLSDGQIVYQGPRENVLE 416
++ +G IV G ++
Sbjct: 224 VIENGHIVETGTHRELIA 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 101 bits (252), Expect = 3e-24
Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 23/232 (9%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
ITF +IR+ D L ++ + + G + ++G SG+GK+TL ++
Sbjct: 2 ITFRNIRFRY-----------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ 50
Query: 899 GRKTGGYVSGSITISGYP---KNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955
+G + I G+ + R G Q D + ++ +++ +
Sbjct: 51 RFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVE 107
Query: 956 EVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1015
+V + + + + + +GLS QR+R+ IA LV NP I+ D
Sbjct: 108 KVIYAAK---LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD 164
Query: 1016 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
E TS LD + ++MR + + GRTV+ H+ S + +A D +++M++G
Sbjct: 165 EATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLST-VKNA-DRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 78.0 bits (192), Expect = 2e-16
Identities = 49/259 (18%), Positives = 95/259 (36%), Gaps = 47/259 (18%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220
IL +++ IK + ++G SGK+TL + + +G+V +GH
Sbjct: 12 KPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHD 66
Query: 221 MEEFVPQ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI 277
+ P R + Q D + ++ + ++ ++++ K A
Sbjct: 67 LALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAGA 118
Query: 278 KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG 337
+ + E G+SGGQR+R+
Sbjct: 119 ---------------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 151
Query: 338 EMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397
LV + L DE ++ LD + + I+ ++ + I G VI + T + D +
Sbjct: 152 RALVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRI 207
Query: 398 ILLSDGQIVYQGPRENVLE 416
I++ G+IV QG + +L
Sbjct: 208 IVMEKGKIVEQGKHKELLS 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 100 bits (251), Expect = 5e-24
Identities = 42/233 (18%), Positives = 86/233 (36%), Gaps = 24/233 (10%)
Query: 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898
+ F ++ + P + L+ ++ G AL+G SG+GK+T+ ++
Sbjct: 14 LEFRNVTFT-----------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 899 GRKTGGYVSGSITISGYP---KNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPP 955
G I + G+ + Q
Sbjct: 63 RFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 956 EVDSDTRKMFVEEVMELVELNPIR-EALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1014
+++ R + M+ + + ++G G LS QR+R+ IA L+ + I+ +
Sbjct: 121 QIEEAAR---MAYAMDFINKMDNGLDTIIGENG-VLLSGGQRQRIAIARALLRDSPILIL 176
Query: 1015 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
DE TS LD + + + + RT + H+ S + DE+++++ G
Sbjct: 177 DEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 85.7 bits (212), Expect = 6e-19
Identities = 51/259 (19%), Positives = 98/259 (37%), Gaps = 46/259 (17%)
Query: 161 PSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHG 220
P R+ P L +++ I + L+G SGK+T+ + D G + +GH
Sbjct: 24 PGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHD 78
Query: 221 MEEFVP---QRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANI 277
+ E+ + A +SQN + +++ + A
Sbjct: 79 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYA 131
Query: 278 KPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTG 337
D I K ++ DT++G E +SGGQR+R+
Sbjct: 132 M-----DFINK---------------------MDNGLDTIIG-ENGVLLSGGQRQRIAIA 164
Query: 338 EMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397
L+ + L +DE ++ LD+ + I +L + + + ++ T E D++
Sbjct: 165 RALLRDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEI 220
Query: 398 ILLSDGQIVYQGPRENVLE 416
+++ DG IV +G +L
Sbjct: 221 VVVEDGIIVERGTHSELLA 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (247), Expect = 1e-23
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 27/211 (12%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP---KNQETFA 923
L +SG R G + L+G +GAGK+TL+ +AG +G GSI +G P + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 924 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALV 983
Y Q V+ L + TR + +V + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 984 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1036
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1037 VDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
G +V + H + L+K G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 74.6 bits (183), Expect = 3e-15
Identities = 47/259 (18%), Positives = 83/259 (32%), Gaps = 60/259 (23%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
T L +SG ++ + L+GP +GK+TLL +AG G + + G +E +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWSAT 68
Query: 228 RTS---AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDID 284
+ + AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 285 LIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPA 344
+ + + + V L L+ +SGG+ +R+ +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 345 -------RALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397
+ L +DE LD + + L G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 398 ILLSDGQIVYQGPRENVLE 416
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.1 bits (239), Expect = 2e-22
Identities = 49/234 (20%), Positives = 95/234 (40%), Gaps = 21/234 (8%)
Query: 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 897
+ F D+ +A ++ L+G++ RPG +TAL+G +G+GK+T+ +L
Sbjct: 11 LVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 898 AGRKTGGYVSGSITISGYP---KNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP 954
G + + G P R Q + ++ E++ Y +
Sbjct: 61 QNLYQ--PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYGLTQKPT 117
Query: 955 PEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1014
E + + L + V G LS QR+ + +A L+ P ++ +
Sbjct: 118 MEEITAAAVK-SGAHSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLIL 175
Query: 1015 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
D+ TS LDA + V + + + + R+V+ S+ + A D +L ++ G
Sbjct: 176 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL-VEQA-DHILFLEGG 227
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.2 bits (221), Expect = 4e-20
Identities = 50/256 (19%), Positives = 101/256 (39%), Gaps = 42/256 (16%)
Query: 164 KKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEE 223
+ + +L ++ ++P +T L+GP SGK+T+ L G++ +G + +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 224 FVPQ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPD 280
+ + R A + Q + + +++E +A+ +
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 281 PDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEML 340
P ++ I AA G I GL DT V E +SGGQR+ + L
Sbjct: 116 PTMEEITAAAVKSGAHS--------FISGLPQGYDTEVD-EAGSQLSGGQRQAVALARAL 166
Query: 341 VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400
+ L +D+ ++ LD+++ Q+ L +S + + ++ E D ++ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 401 SDGQIVYQGPRENVLE 416
G I G + ++E
Sbjct: 225 EGGAIREGGTHQQLME 240
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 93.9 bits (233), Expect = 8e-22
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARIS 926
K ++ G +G SG GK+TL+ ++AG +T SG + I N A
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERG 73
Query: 927 -GYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL 985
G Q+ PH++V E++ + L + + R V +V E+++L + +
Sbjct: 74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDRK--- 127
Query: 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1044
LS QR+R+ I LVA PS+ +DEP S LDA + + GRT++
Sbjct: 128 --PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 185
Query: 1045 CTIHQPSIDIFDAFDELLLMKRG 1067
H D+++++ G
Sbjct: 186 YVTHDQVE-AMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 77.3 bits (190), Expect = 4e-16
Identities = 51/270 (18%), Positives = 93/270 (34%), Gaps = 52/270 (19%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP 226
+ + D++ I + +GP GK+TLL +AG SG + M + P
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPP 69
Query: 227 QRTS-AYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
+ Q+ ++V E ++F + G ++
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQRV----------- 111
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
+ V ++L L D +SGGQR+R+ G LV
Sbjct: 112 ----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPS 150
Query: 346 ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405
+DE + LD++ Q+ +H G +I + E L D +++L G++
Sbjct: 151 VFLLDEPLSNLDAALRVQMRI-EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 209
Query: 406 VYQGPRENVLEFFERMGFKCPERKGVADFL 435
G + + P + VA F+
Sbjct: 210 AQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.9 bits (223), Expect = 2e-20
Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 15/212 (7%)
Query: 861 DDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP---K 917
DD + L+ +S +P + A G SG GK+T+ +L +G ITI G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNI 69
Query: 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP 977
+ E + G+ Q T+ E+L Y L + + ++ +
Sbjct: 70 SLENWRSQIGFVSQDSAIMAG-TIRENLTY----GLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 978 IREALVGLPGVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1035
+ + L G G +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + +
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 1036 TVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067
+ GRT + H+ S I DA D++ +++G
Sbjct: 185 -LMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 78.8 bits (194), Expect = 1e-16
Identities = 47/251 (18%), Positives = 81/251 (32%), Gaps = 42/251 (16%)
Query: 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ 227
IL D+S +P + GP GK+T+ L +G +T +G ++ +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 228 RTSAYIS--QNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDL 285
+ I D I T+RE L + + +L+ PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132
Query: 286 IMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPAR 345
+ E ISGGQR+RL + +
Sbjct: 133 V---------------------------------GERGVKISGGQRQRLAIARAFLRNPK 159
Query: 346 ALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405
L +DE + LDS + + +L ++ G + + T D + + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 406 VYQGPRENVLE 416
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 86.1 bits (213), Expect = 4e-19
Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 20/230 (8%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARI 925
++ +S + G L+G SG GKTT + ++AG + G I I E +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFV 76
Query: 926 SGYCEQTDIHSPHVTVYESLVYSAWLRLPPEV---DSDTRKMFVEEVMELVELNPIREAL 982
+ +Y + + P ++ V EV EL+ L +
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR- 135
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1041
LS QR+R+ + +V P + MDEP S LDA+ + ++ G
Sbjct: 136 ----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV 191
Query: 1042 TVVCTIHQPSIDIFDAFDELLLMKRGG-------EEIYVGPLGRHCSQLI 1084
T + H + D + +M RG +E+Y P + I
Sbjct: 192 TTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFI 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 71.5 bits (175), Expect = 4e-14
Identities = 54/273 (19%), Positives = 98/273 (35%), Gaps = 52/273 (19%)
Query: 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL---GKDLKFSGR-VTYNGHGME 222
+T + ++S +K +LLGP GKTT L +AG + + V G+
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 223 EFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPD 282
R A + Q+ MTV + +AF + + V + ++
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-------EIDQRV-------- 120
Query: 283 IDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVG 342
V ++LGL + + +SGGQR+R+ G +V
Sbjct: 121 -------------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVR 156
Query: 343 PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402
+ MDE + LD+ ++ L++ L T + E + D + +++
Sbjct: 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR 215
Query: 403 GQIVYQGPRENVLEFFERMGFKCPERKGVADFL 435
G + G + V + P VA F+
Sbjct: 216 GVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 84.8 bits (209), Expect = 1e-18
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 21/230 (9%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVS--GSITISGYPKNQETF 922
L V+ G ++G SGAGKTT M ++AG + G + + S
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 923 ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREAL 982
R G QT P++T +E++ + ++ + + VEEV ++++++ +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLN-- 135
Query: 983 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1041
LS Q++R+ +A LV +PS++ +DEP S LDAR V+ G
Sbjct: 136 ---HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192
Query: 1042 TVVCTIHQPSIDIFDAFDELLLMKRGG-------EEIYVGPLGRHCSQLI 1084
T++ H P+ DIF D + ++ +G E++Y P+ + LI
Sbjct: 193 TLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 74.0 bits (181), Expect = 5e-15
Identities = 50/279 (17%), Positives = 96/279 (34%), Gaps = 57/279 (20%)
Query: 163 RKKPLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM- 221
+K + L +V+ I+ +LGP +GKTT + +AG +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 222 -----EEFVPQRTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAAN 276
R + Q +T E +AF + R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------IRKRV-- 121
Query: 277 IKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTT 336
+ V KIL + + R +SG Q++R+
Sbjct: 122 -------------------------EEVAKILDIHHVLNHFP-----RELSGAQQQRVAL 151
Query: 337 GEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDD 396
LV L +DE + LD+ +++ L T ++ PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 397 LILLSDGQIVYQGPRENVLEFFERMGFKCPERKGVADFL 435
+ +L G++V G E++ + P VA +
Sbjct: 211 VGVLVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 77.4 bits (190), Expect = 3e-16
Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 16/203 (7%)
Query: 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISG-YPKNQETFARI 925
L +S G ++G +GAGKT ++++AG SG I + G +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHD 73
Query: 926 SGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGL 985
+ Q PH+ V ++L + ++ V + +++ + +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1044
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1045 CTIHQPSIDIFDAFDELLLMKRG 1067
H + + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 73.9 bits (181), Expect = 5e-15
Identities = 58/267 (21%), Positives = 102/267 (38%), Gaps = 55/267 (20%)
Query: 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQR- 228
L ++S ++ ++LGP +GKT L +AG D SGR+ +G + + P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 229 TSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMK 288
A++ QN M V++ L F R + + VL
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLD---------------------- 110
Query: 289 AASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALF 348
+ L +E D +SGG+++R+ LV + L
Sbjct: 111 ---------------TARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILL 150
Query: 349 MDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQ 408
+DE + LD T + + +H N V+ + E + D + ++ DG+++
Sbjct: 151 LDEPLSALDP-RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 409 GPRENVLEFFERMGFKCPERKGVADFL 435
G E E FE+ P VA F+
Sbjct: 210 GKPE---EIFEK-----PVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 69.7 bits (170), Expect = 2e-13
Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 19/196 (9%)
Query: 876 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYVSGSITISGYPKNQETFARIS-GYCEQT 932
L+G +GAGK+ ++++AG + G + ++G R G+ Q
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPD----RGEVRLNGADITPLPPERRGIGFVPQD 78
Query: 933 DIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992
PH++VY ++ Y V+ R V E+ E + + + + + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1051
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1052 IDIFDAFDELLLMKRG 1067
+ DE+ +M G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 62.7 bits (152), Expect = 3e-11
Identities = 50/252 (19%), Positives = 89/252 (35%), Gaps = 55/252 (21%)
Query: 185 LLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTS-AYISQNDLHIGEM 243
LLGP +GK+ L +AG + D G V NG + P+R ++ Q+ +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDY 303
+V +A+ R R ++E+
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREM----------------------------------- 110
Query: 304 VLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQ 363
E + D +SGG+R+R+ LV R L +DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 364 IVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLEFFERMGF 423
++ LR + + E L D++ ++ +G+IV +G + +
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 424 KCPERKGVADFL 435
+ VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.3 bits (111), Expect = 3e-06
Identities = 21/198 (10%), Positives = 36/198 (18%), Gaps = 36/198 (18%)
Query: 881 ALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVT 940
+ G G GKTTL+ + R + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI--- 58
Query: 941 VYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLT 1000
+ + +
Sbjct: 59 ---------------------------FSSKFFTSKKLVGSYGVNVQYFEELAIPILERA 91
Query: 1001 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDE 1060
+I +DE + D VV TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1061 LLLMKRGGEEIYVGPLGR 1078
+ + G I + P R
Sbjct: 149 IRRLP-GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 42.3 bits (98), Expect = 1e-04
Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 5/105 (4%)
Query: 184 LLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ--RTSAYISQNDLHIG 241
++ G P GKTTL+ + +LGK + E +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLI 286
+ V E+ + R K + +I
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (93), Expect = 0.001
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 162 SRKKPLTILHDVSGIIKPQR----------LTLLLGPPSSGKTTLLLALAGKLGKDLKFS 211
+ KP+ IL + P + L+ P +GK+ L L LA ++
Sbjct: 1 ATHKPINILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLL 60
Query: 212 GRVTYNGH 219
Sbjct: 61 EVGELPTG 68
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (93), Expect = 0.001
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 947 YSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELV 1006
+A L + E + + L + G V+ L+ L A+
Sbjct: 299 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSY 352
Query: 1007 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1052
+DE + LD + +R + + + ++
Sbjct: 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM 398
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 0.003
Identities = 13/79 (16%), Positives = 26/79 (32%)
Query: 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYI 233
G I+ +T + G +GKT + LA + G + E +
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 234 SQNDLHIGEMTVRETLAFS 252
+ V + +A++
Sbjct: 77 VAERYGLSGSDVLDNVAYA 95
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1436 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.58 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.33 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.29 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.22 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.81 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.71 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.53 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.31 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.29 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.01 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.85 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.34 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.26 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.24 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.01 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.83 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.39 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.26 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.26 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.21 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.06 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.05 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.04 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.03 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.99 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.92 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.87 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.82 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.79 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.78 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.75 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.68 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.63 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.54 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.53 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.53 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.49 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.43 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.34 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.28 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.2 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.18 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.13 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.12 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.05 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.05 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.83 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.8 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.79 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.75 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.71 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.71 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.71 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.71 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.71 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.64 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.55 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.55 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.5 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.49 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.49 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.43 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.39 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.36 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.31 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.26 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.25 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.19 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.16 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.13 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.13 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.12 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.11 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.09 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.98 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.96 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.87 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.85 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.83 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.82 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.81 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.81 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.79 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.76 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.75 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.71 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.7 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.7 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.69 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.68 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.66 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.66 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.62 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.6 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.57 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.56 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.51 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.44 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.38 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.37 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.37 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.37 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.35 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.34 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.33 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.3 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.27 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.27 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.25 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.24 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.22 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.21 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.21 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.19 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.17 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.17 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.13 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.11 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.1 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.06 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.06 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.04 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.03 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.97 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.83 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.77 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.75 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.73 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.71 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.67 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.61 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.57 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.55 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.45 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.34 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.3 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.27 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.24 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.22 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.17 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.11 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.08 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.07 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.01 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.99 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.95 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.92 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.86 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.78 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.7 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.63 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.54 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.52 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.52 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.48 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.42 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.36 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.35 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.35 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.32 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.29 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.28 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.26 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.23 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.19 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.15 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.15 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 91.1 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.07 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.05 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.99 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.99 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.95 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.92 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.89 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.85 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.81 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.68 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.64 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.58 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.55 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.5 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.48 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.42 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.36 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.26 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.26 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.22 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.19 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.17 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.14 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.07 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.06 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.05 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.96 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.92 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.92 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.9 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 89.83 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.74 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.72 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.7 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 89.67 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.66 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.63 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.62 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.56 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.49 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.49 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.46 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.45 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.39 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.33 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.3 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.27 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.19 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.13 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.12 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.07 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.04 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.01 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.0 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.92 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.89 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.89 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.86 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 88.81 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.74 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.74 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 88.73 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.71 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 88.68 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.66 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.66 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.61 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.55 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 88.54 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.51 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.41 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.38 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.37 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.32 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.32 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.18 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.14 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.11 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 88.11 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.06 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.06 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.04 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.01 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.99 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.92 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.82 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.82 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.81 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.74 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.7 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.67 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.66 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.61 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.56 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.45 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.3 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.27 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.27 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 87.25 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.24 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 87.19 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.17 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.15 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.12 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.11 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.09 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.01 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.89 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.88 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 86.86 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.84 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.84 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 86.81 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 86.79 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.73 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.65 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.57 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 86.54 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.5 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.45 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.41 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.4 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.4 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.39 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.39 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.32 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.28 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.22 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.13 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.09 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.09 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 86.08 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.05 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.97 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 85.93 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.87 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.82 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.79 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 85.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.72 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 85.7 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 85.55 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.54 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.51 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 85.5 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.48 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 85.47 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.46 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.4 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 85.37 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.11 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.08 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 84.99 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.71 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.68 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.63 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.55 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 84.51 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.46 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.42 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.31 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 84.18 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 84.11 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 84.05 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.02 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.92 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.91 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 83.79 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.78 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.78 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.51 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 83.43 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 83.35 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 83.21 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 83.21 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.19 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 83.15 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.11 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 83.1 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.1 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.04 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.02 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 82.99 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 82.86 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 82.83 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 82.67 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 82.62 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 82.6 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.45 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 82.44 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.44 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 82.42 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.3 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 82.28 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 82.08 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 82.02 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 81.72 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 81.06 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.03 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.88 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 80.8 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 80.76 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.63 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 80.27 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-46 Score=406.33 Aligned_cols=208 Identities=24% Similarity=0.362 Sum_probs=150.3
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-ceEEEecCCCCcCCCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEMT 244 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~~~~~~~lT 244 (1436)
+.++|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.+..+. +.+|||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence 356999999999999999999999999999999999999998 99999999999876653 57999999999999999
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 046196 245 VRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLR 324 (1436)
Q Consensus 245 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 324 (1436)
|+||+.|+..+.+... .+...+++.+|+.+||++..|..+ +
T Consensus 89 v~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~~~-----~ 129 (232)
T d2awna2 89 VAENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----K 129 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhCCChhhhhCCh-----h
Confidence 9999999876554211 122345678899999998887655 4
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+.. +++++.++|+..++..+||||++|++|+
T Consensus 130 ~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999987654 5666778999999999999999999999
Q ss_pred EEEecChhHHHH
Q 046196 405 IVYQGPRENVLE 416 (1436)
Q Consensus 405 iv~~G~~~~~~~ 416 (1436)
|+++|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCHHHHHh
Confidence 999999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.3e-45 Score=404.21 Aligned_cols=207 Identities=24% Similarity=0.347 Sum_probs=176.8
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-ceEEEecCCCCcCCCCCH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~~~~~~~lTV 245 (1436)
.++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++....+. +.+|||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccchH
Confidence 46999999999999999999999999999999999999998 99999999999776554 569999999999999999
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
+||+.|+.+.++... .+...+++++|+.+||++.+|.. +..
T Consensus 96 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRY-----PAQ 136 (239)
T ss_dssp HHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSC-----TTT
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCC-----hhh
Confidence 999999877654311 11234567889999999877754 457
Q ss_pred CChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeE
Q 046196 326 ISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQI 405 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~i 405 (1436)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.++++.+.. +++++.++|+..++.++||||++|++|+|
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987654 56666789999999999999999999999
Q ss_pred EEecChhHHHH
Q 046196 406 VYQGPRENVLE 416 (1436)
Q Consensus 406 v~~G~~~~~~~ 416 (1436)
+++|+++++.+
T Consensus 216 v~~G~~~el~~ 226 (239)
T d1v43a3 216 LQIGSPTEVYL 226 (239)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999999853
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-46 Score=406.21 Aligned_cols=213 Identities=26% Similarity=0.388 Sum_probs=153.7
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
|+++|+++++ +++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 1 Iev~nv~k~y-------------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 4678887766 34579999999999999999999999999999999999987 57999999999875
Q ss_pred cc-cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 QE-TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.. ..+|.+|||+|++.++|++||+||+.|...++ ..+.++.+++++++++.++|.+..+.. +..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~-----~~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCC-----hhhCCHHHHH
Confidence 42 34567999999999999999999999987655 234556677899999999999988876 4579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||++||++. ++..++||+++|++ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 99999999999999999999999999999999999999864 5999999999986 68888999999996 799999986
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=9.4e-46 Score=405.19 Aligned_cols=214 Identities=22% Similarity=0.367 Sum_probs=185.1
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.|+++|+++++ +++.+|+||||+|++||+++|+||||||||||+++|+|..+ |.+|+|.++|+++
T Consensus 6 ~I~v~nlsk~y-------------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceec
Confidence 47888988776 24579999999999999999999999999999999999987 5799999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046196 918 NQ-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQR 996 (1436)
Q Consensus 918 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqr 996 (1436)
.. ...+|.+|||+|++.++|++||+||+.|.+.++ ..+.++.+++++++++.++|.+..+.. +.+||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCH
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHH
Confidence 54 234567999999999999999999999876554 456777888899999999999888876 468999999
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||+|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |+|||++|||+. ++.++||||++|++ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999755 999999999986 68889999999996 79999998
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.7e-45 Score=402.32 Aligned_cols=214 Identities=26% Similarity=0.365 Sum_probs=191.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|++++++ ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred cEEEEeEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEe
Confidence 478889887762 3569999999999999999999999999999999999987 5799999999876
Q ss_pred Ccc-------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046196 918 NQE-------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSG 990 (1436)
Q Consensus 918 ~~~-------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~ 990 (1436)
... ..++.+|||+|++.++|++||+||+.|...++ ..+.++.+++++++++.++|.+..+.. ++.
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~-----p~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGG
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhh
Confidence 321 12467999999999999999999999998776 356778888899999999999888876 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
|||||||||+|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||++||+++ ++...||||++|++ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 67888999999996 79
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5e-45 Score=400.22 Aligned_cols=207 Identities=26% Similarity=0.361 Sum_probs=182.5
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc-------cceEEEecCCCCc
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP-------QRTSAYISQNDLH 239 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~~~~ 239 (1436)
.++|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchhh
Confidence 46999999999999999999999999999999999999998 9999999988754321 3579999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.|+.+..+... .+...+++++|+.+||++.+|..+
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~l~~~~~~~p- 137 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred cchhhhhHhhhhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh-
Confidence 999999999999987654211 112345778899999998877554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+.|||||||||+|||||+.+|++|||||||+|||+.++.+|.+.++++.+.. +++|+.++|+.+++.++||+|++
T Consensus 138 ----~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 5699999999999999999999999999999999999999999999987644 56677789999999999999999
Q ss_pred ecCCeEEEecChhHHHH
Q 046196 400 LSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~~ 416 (1436)
|++|+|++.|+++|+.+
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.6e-45 Score=399.85 Aligned_cols=208 Identities=22% Similarity=0.303 Sum_probs=182.3
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcc-----c-cceEEEecCCCCc
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFV-----P-QRTSAYISQNDLH 239 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~-~~~~~yv~Q~~~~ 239 (1436)
+..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... . ++.+|||+|++.+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 356999999999999999999999999999999999999998 999999999875422 1 3579999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.|+.+..+... .+.+.+++++|+.+||++..|..+
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~p- 138 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFP- 138 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG-
T ss_pred cccccHHHHhhhhhHhhcCCH----------------------------------HHHHHHHHHHHhhcChHhhhhCCh-
Confidence 999999999999977654211 112345678899999988777555
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+.. +++++.++|+..++.++||+|++
T Consensus 139 ----~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 139 ----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp ----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHHhCCEEEE
Confidence 5699999999999999999999999999999999999999999999987654 56677789999999999999999
Q ss_pred ecCCeEEEecChhHHHH
Q 046196 400 LSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~~ 416 (1436)
|++|+|++.|+++++.+
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999854
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.9e-45 Score=402.98 Aligned_cols=216 Identities=26% Similarity=0.391 Sum_probs=191.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++. ++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEECC-----------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEe
Confidence 4788999887731 23568999999999999999999999999999999999987 5799999999886
Q ss_pred Cc------ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046196 918 NQ------ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 918 ~~------~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~L 991 (1436)
.. ...+|.+|||+|++.++|++||+||+.|....+ ..+.++.+++++++++.+||.+..+..+ .+|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhC
Confidence 32 123567999999999999999999999986543 4567778888999999999998888764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEE 1070 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~ 1070 (1436)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++ ++.++|||+++|++ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999655 999999999986 68889999999996 799
Q ss_pred EEEcCC
Q 046196 1071 IYVGPL 1076 (1436)
Q Consensus 1071 ~y~G~~ 1076 (1436)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEEcCH
Confidence 999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.2e-45 Score=398.39 Aligned_cols=202 Identities=24% Similarity=0.352 Sum_probs=180.8
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-ceEEEecCCCCcCCCCCHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+..+. +.+|||+|++.+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHH
Confidence 3899999999999999999999999999999999999998 99999999999876654 5799999999999999999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.|+.+.++... ..+++++++.+||.+..|..+ ..|
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNP-----LTL 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCG-----GGS
T ss_pred HHHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhCCh-----hhC
Confidence 99999876554211 123566788999998887655 469
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv 406 (1436)
||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+. .+++|+.++|+..++.++||||++|++|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998664 4667777999999999999999999999999
Q ss_pred EecChhHHH
Q 046196 407 YQGPRENVL 415 (1436)
Q Consensus 407 ~~G~~~~~~ 415 (1436)
++|+++++.
T Consensus 208 ~~g~~~el~ 216 (229)
T d3d31a2 208 QVGKPEEIF 216 (229)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999999985
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.5e-45 Score=398.01 Aligned_cols=207 Identities=21% Similarity=0.308 Sum_probs=182.6
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc------ceEEEecCCCCc
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ------RTSAYISQNDLH 239 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~------~~~~yv~Q~~~~ 239 (1436)
..++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.....+ +.+|||+|++.+
T Consensus 17 ~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l 93 (240)
T d3dhwc1 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 93 (240)
T ss_dssp EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCC
T ss_pred eEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhcccccccccccc
Confidence 356899999999999999999999999999999999999998 99999999998765432 469999999999
Q ss_pred CCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCccccccccc
Q 046196 240 IGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVG 319 (1436)
Q Consensus 240 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 319 (1436)
++.+||+||+.|+.+..+... .+...+++++|+.+||++.+|..+
T Consensus 94 ~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~- 138 (240)
T d3dhwc1 94 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP- 138 (240)
T ss_dssp CTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCB-
T ss_pred CCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999999887654321 112345677899999998776554
Q ss_pred CcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEE
Q 046196 320 DEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLIL 399 (1436)
Q Consensus 320 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iiv 399 (1436)
+.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. +++++.++|+..++..+||||++
T Consensus 139 ----~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~v 213 (240)
T d3dhwc1 139 ----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 213 (240)
T ss_dssp ----SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 5699999999999999999999999999999999999999999999987644 56677789999999999999999
Q ss_pred ecCCeEEEecChhHHH
Q 046196 400 LSDGQIVYQGPRENVL 415 (1436)
Q Consensus 400 L~~G~iv~~G~~~~~~ 415 (1436)
|++|+|++.|+++++.
T Consensus 214 l~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 214 ISNGELIEQDTVSEVF 229 (240)
T ss_dssp EETTEEEEEEETTTTT
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999999873
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.7e-44 Score=394.12 Aligned_cols=219 Identities=23% Similarity=0.369 Sum_probs=188.4
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|++++++.. .....+|+||||+|++||++||+|||||||||||++|+|..+ |.+|+|+++|.++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEeCCC---------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 6788988777421 123458999999999999999999999999999999999987 57999999999875
Q ss_pred ccc------c-cceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCC
Q 046196 919 QET------F-ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-IREALVGLPGVSG 990 (1436)
Q Consensus 919 ~~~------~-~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~ 990 (1436)
... + ++.+|||+|++.++|.+||+||+.+....+.....+.+++.+++.++++.++|.+ ..+.. +.+
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----p~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCC-----hhh
Confidence 321 1 3469999999999999999999999887765556677778888899999999975 45554 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcE
Q 046196 991 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGE 1069 (1436)
Q Consensus 991 LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~ 1069 (1436)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ....|||+++|++ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999964 4589999999996 79
Q ss_pred EEEEcCC
Q 046196 1070 EIYVGPL 1076 (1436)
Q Consensus 1070 ~~y~G~~ 1076 (1436)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9998864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-45 Score=399.03 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=190.1
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++++... ....++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 6788988776421 123468999999999999999999999999999999999987 57999999999864
Q ss_pred c---c---cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046196 919 Q---E---TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLS 992 (1436)
Q Consensus 919 ~---~---~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LS 992 (1436)
. . .+++.+|||+|+..++|.+||+||+.|...++ ..+.++.+++++++++.+||.+..+.. +..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~-----~~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSC-----BSCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 2 1 23467999999999999999999999987665 345566778899999999999888776 45799
Q ss_pred HHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 993 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 993 gGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||++|||+. ++..+|||+++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999766 999999999976 57788999999996 7999
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
+.|++
T Consensus 221 ~~G~~ 225 (240)
T d3dhwc1 221 EQDTV 225 (240)
T ss_dssp EEEET
T ss_pred EECCH
Confidence 99987
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=7.8e-45 Score=395.38 Aligned_cols=209 Identities=22% Similarity=0.287 Sum_probs=184.6
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|+++++. + .+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEecc
Confidence 57788887762 2 37999999999999999999999999999999999987 57999999999975
Q ss_pred c-ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 919 Q-ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 919 ~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
. ...++.+|||+|++.++|++||+||+.|...++.. +. +++++++++.+++.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KD---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CC---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhccc---cH---HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhc
Confidence 4 23456799999999999999999999999877632 22 235889999999999888764 579999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|.|||++||++. ++.+.+|||++|++ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999999865 4999999999986 68889999999996 799999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.7e-43 Score=383.39 Aligned_cols=205 Identities=21% Similarity=0.261 Sum_probs=173.2
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-------ceEEEecCCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-------RTSAYISQNDL 238 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~~~ 238 (1436)
...+|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.....+ +.+|||+|++.
T Consensus 17 ~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~ 93 (230)
T d1l2ta_ 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (230)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred eEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecchh
Confidence 356899999999999999999999999999999999999998 99999999998776543 35999999999
Q ss_pred cCCCCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 046196 239 HIGEMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEV-CADTM 317 (1436)
Q Consensus 239 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 317 (1436)
+++.+||+||+.++......+.. .. .+....+.++|+.+||++ .+|.
T Consensus 94 l~~~~tv~eni~~~~~~~~~~~~-------~~------------------------~~~~~~~~~~l~~~~L~~~~~~~- 141 (230)
T d1l2ta_ 94 LIPLLTALENVELPLIFKYRGAM-------SG------------------------EERRKRALECLKMAELEERFANH- 141 (230)
T ss_dssp CCTTSCHHHHHHHHHHTCCSSCC-------CH------------------------HHHHHHHHHHHHHTTCCGGGTTC-
T ss_pred hCcCccHHHHHhHHHHHhccCCC-------CH------------------------HHHHHHHHHHHHhhchhhhhhcC-
Confidence 99999999999998776432211 00 111234556789999976 3554
Q ss_pred ccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccE
Q 046196 318 VGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDL 397 (1436)
Q Consensus 318 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 397 (1436)
.+..|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+. .++++|.++|+...+ ++||||
T Consensus 142 ----~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~a-~~~drv 215 (230)
T d1l2ta_ 142 ----KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINVA-RFGERI 215 (230)
T ss_dssp ----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEEECSCHHHH-TTSSEE
T ss_pred ----ChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEECCCHHHH-HhCCEE
Confidence 45579999999999999999999999999999999999999999999998764 456677788987654 899999
Q ss_pred EEecCCeEEEecCh
Q 046196 398 ILLSDGQIVYQGPR 411 (1436)
Q Consensus 398 ivL~~G~iv~~G~~ 411 (1436)
++|++|+|+++|+.
T Consensus 216 ~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 216 IYLKDGEVEREEKL 229 (230)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEEECCEEEEeccC
Confidence 99999999999864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-43 Score=387.36 Aligned_cols=208 Identities=25% Similarity=0.411 Sum_probs=170.9
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+||||+|++||.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+| +.
T Consensus 16 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ 91 (241)
T d2pmka1 16 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NR 91 (241)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-TS
T ss_pred cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccC-Cc
Confidence 45999999999999999999999999999999999999998 9999999999987654 36799999998755 67
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+|||.|+.+. .+.+.+.+++...+... ....++...+|.+|+.+
T Consensus 92 Ti~eNi~~~~~~-------------------------~~~~~~~~~~~~~~~~~--------~i~~~~~~~~t~i~~~g- 137 (241)
T d2pmka1 92 SIIDNISLANPG-------------------------MSVEKVIYAAKLAGAHD--------FISELREGYNTIVGEQG- 137 (241)
T ss_dssp BHHHHHCTTSTT-------------------------CCHHHHHHHHHHHTCHH--------HHTTSTTGGGSBCSTTT-
T ss_pred cccccccccCcc-------------------------ccHHHHHHHHHHHhhHH--------HHHhhhcchhhhcCCCC-
Confidence 999999986421 11122222222211111 12346778899998764
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
..|||||||||+|||||+.+|+||+||||||+||+.++.+|++.|+++.+ ++|+|.++|+... ...||+|++|++|
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~-~~~~D~i~vl~~G 213 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK---GRTVIIIAHRLST-VKNADRIIVMEKG 213 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT---TSEEEEECSSGGG-GTTSSEEEEEETT
T ss_pred CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC---CCEEEEEECCHHH-HHhCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998753 4556667887754 5789999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+|+++|+++++++
T Consensus 214 ~Iv~~G~~~ell~ 226 (241)
T d2pmka1 214 KIVEQGKHKELLS 226 (241)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999975
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3e-43 Score=388.51 Aligned_cols=214 Identities=26% Similarity=0.354 Sum_probs=191.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.|+++|++.++ +++++|+||||+|++||++||+||||||||||+++|+|..+ |.+|+|.++|.++
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEec
Confidence 36788887765 45679999999999999999999999999999999999987 5799999999986
Q ss_pred Cc--ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046196 918 NQ--ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQ 995 (1436)
Q Consensus 918 ~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGq 995 (1436)
.. ...++.+|||||+..+++++||.||+.|.+.++. .+.++..+.++++++.+++.+..+..+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred ccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHH
Confidence 43 3446779999999999999999999999887763 345666778899999999998888774 4799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcC
Q 046196 996 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGP 1075 (1436)
Q Consensus 996 rqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~ 1075 (1436)
|||++|||||+++|++|+|||||+|||+.++..++++|++++++|+|||++||+++ ++...||||++|++ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999989999999999986 67889999999996 79999997
Q ss_pred C
Q 046196 1076 L 1076 (1436)
Q Consensus 1076 ~ 1076 (1436)
+
T Consensus 217 ~ 217 (238)
T d1vpla_ 217 V 217 (238)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-42 Score=377.81 Aligned_cols=199 Identities=24% Similarity=0.387 Sum_probs=174.6
Q ss_pred cceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc-ceEEEecCCCCcCCCCCHHHHHH
Q 046196 172 DVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ-RTSAYISQNDLHIGEMTVRETLA 250 (1436)
Q Consensus 172 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~~~~~~~lTV~E~l~ 250 (1436)
|||++++ +|+++|+||||||||||+++|+|+++|+ +|+|.++|.++....+. +.+|||+|++.+++++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7999995 6899999999999999999999999998 99999999999876654 67999999999999999999999
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhh
Q 046196 251 FSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQ 330 (1436)
Q Consensus 251 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 330 (1436)
|+.+.. .+ .+.+.+++++++.+||++.+|..+ +.|||||
T Consensus 93 ~~l~~~------------~~------------------------~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~ 131 (240)
T d2onka1 93 YGLRNV------------ER------------------------VERDRRVREMAEKLGIAHLLDRKP-----ARLSGGE 131 (240)
T ss_dssp TTCTTS------------CH------------------------HHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHH
T ss_pred hhhccc------------CH------------------------HHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHH
Confidence 975321 01 112235678899999998777554 5699999
Q ss_pred hhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecC
Q 046196 331 RKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGP 410 (1436)
Q Consensus 331 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~ 410 (1436)
||||+|||||+.+|++|+|||||+|||+.++..+.+.++++.+.. +++++.++|+..++.++||+|++|++|+++++|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~-g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999987654 4556668999999999999999999999999999
Q ss_pred hhHHHH
Q 046196 411 RENVLE 416 (1436)
Q Consensus 411 ~~~~~~ 416 (1436)
++++.+
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999964
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1e-42 Score=385.07 Aligned_cols=214 Identities=21% Similarity=0.317 Sum_probs=183.1
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..++++|+++++ +++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred eEEEEeeEEEEE-------------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccc
Confidence 357889988776 34569999999999999999999999999999999999987 579999999998
Q ss_pred CCccc---c-cceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCC
Q 046196 917 KNQET---F-ARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELV-ELNPIREALVGLPGVSGL 991 (1436)
Q Consensus 917 ~~~~~---~-~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l-~l~~~~~~~~g~~~~~~L 991 (1436)
+.... . +..++|++|+..+++++||+||+.+.+..+.. .+..++.++++++.+ ++.+..+..+ ..|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSS
T ss_pred cccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhChHHHHhCch-----hhC
Confidence 75422 2 23489999999999999999999877644322 233444566777766 6777777664 479
Q ss_pred CHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEE
Q 046196 992 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEI 1071 (1436)
Q Consensus 992 SgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~ 1071 (1436)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+.+ ++.+.|||+++|++ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999988999999999986 68899999999996 7999
Q ss_pred EEcCC
Q 046196 1072 YVGPL 1076 (1436)
Q Consensus 1072 y~G~~ 1076 (1436)
+.|++
T Consensus 219 ~~g~~ 223 (240)
T d1ji0a_ 219 LEGKA 223 (240)
T ss_dssp EEEEH
T ss_pred EEcCH
Confidence 99985
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-42 Score=385.63 Aligned_cols=214 Identities=23% Similarity=0.292 Sum_probs=186.0
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++|++.++ ++.++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEE-------------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEec
Confidence 6788887665 24569999999999999999999999999999999999987 57999999998864
Q ss_pred cc----------------cccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccc
Q 046196 919 QE----------------TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-REA 981 (1436)
Q Consensus 919 ~~----------------~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~ 981 (1436)
.. ..++.+|||+|++.++|.+||.||+.+...... ..+.++.++++.++++.+++.+. .+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhcc
Confidence 21 234669999999999999999999998743222 34566777889999999999764 344
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeE
Q 046196 982 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEL 1061 (1436)
Q Consensus 982 ~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1061 (1436)
. +.+|||||||||+|||||+.+|++|+|||||+|||+.++..|++.|++++++|+|||++|||+. ++...||||
T Consensus 146 ~-----p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 Y-----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp C-----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred C-----cccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEE
Confidence 3 3579999999999999999999999999999999999999999999999988999999999986 578899999
Q ss_pred EEEecCcEEEEEcCC
Q 046196 1062 LLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1062 ~~l~~Gg~~~y~G~~ 1076 (1436)
++|++ |+++..|++
T Consensus 220 ~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEET-TEEEEEECH
T ss_pred EEEEC-CEEEEEcCH
Confidence 99996 799999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-42 Score=384.53 Aligned_cols=211 Identities=24% Similarity=0.365 Sum_probs=171.7
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~~~~~l 243 (1436)
..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+...+ +.++||+|++.+| +.
T Consensus 27 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 102 (251)
T d1jj7a_ 27 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GR 102 (251)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-SS
T ss_pred CEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhcccccccc-Cc
Confidence 46999999999999999999999999999999999999998 99999999999776553 6799999999866 56
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.|+..... +.+...++....+. .-...+|++..+|.+++. +
T Consensus 103 tv~eni~~g~~~~~------------------------~~~~~~~~~~~~~~--------~~~i~~l~~g~~~~i~~~-~ 149 (251)
T d1jj7a_ 103 SLQENIAYGLTQKP------------------------TMEEITAAAVKSGA--------HSFISGLPQGYDTEVDEA-G 149 (251)
T ss_dssp BHHHHHHCSCSSCC------------------------CHHHHHHHHHHHTC--------HHHHHTSTTGGGCBCCSS-C
T ss_pred chhhhhhhhhcccc------------------------hHHHHHHHHHHHHH--------HHHHHhccccchhhHhcc-C
Confidence 99999999743211 00111111110000 112346778889999864 4
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
..|||||||||+|||||+.+|+|++||||||+||+.+..+|++.|+++.+.. +++++.++|+.. ..+.||+|++|++|
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~-~~Tvi~itH~l~-~~~~aDrI~vl~~G 227 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY-SRSVLLITQHLS-LVEQADHILFLEGG 227 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGG-GCEEEEECSCHH-HHHTCSEEEEEETT
T ss_pred ccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhc-CCEEEEEeCCHH-HHHhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999999876533 456666888875 55789999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+|+++|+++|+++
T Consensus 228 ~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 228 AIREGGTHQQLME 240 (251)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999975
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.4e-42 Score=382.50 Aligned_cols=207 Identities=20% Similarity=0.263 Sum_probs=176.3
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc----------------cceE
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP----------------QRTS 230 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----------------~~~~ 230 (1436)
.++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcce
Confidence 46999999999999999999999999999999999999998 9999999998864322 2569
Q ss_pred EEecCCCCcCCCCCHHHHHHhhhh-hcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhC
Q 046196 231 AYISQNDLHIGEMTVRETLAFSAR-CQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILG 309 (1436)
Q Consensus 231 ~yv~Q~~~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 309 (1436)
|||+|++.+++.+||.||+.++.. ..+.. + .+....+.++++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHHHHHHHHHTT
T ss_pred EEEEechhhccchhcchhhhhhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcC
Confidence 999999999999999999998742 22110 0 112234567899999
Q ss_pred CcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchh
Q 046196 310 LEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPE 389 (1436)
Q Consensus 310 L~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 389 (1436)
|.+..+ ++.+..|||||||||+|||||+.+|++|||||||+|||+.++.+|.+.|+++.+ . +++|+.++|+..+
T Consensus 138 l~~~~~----~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~-g~til~vtHdl~~ 211 (258)
T d1b0ua_ 138 IDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMGF 211 (258)
T ss_dssp CCHHHH----TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEEEECSCHHH
T ss_pred Cchhhh----ccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-c-CCceEEEeCCHHH
Confidence 976432 234457999999999999999999999999999999999999999999999865 3 5667778999999
Q ss_pred HHHhcccEEEecCCeEEEecChhHHHH
Q 046196 390 TYELFDDLILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 390 ~~~~~D~iivL~~G~iv~~G~~~~~~~ 416 (1436)
+..+||||++|++|+|+++|+++++..
T Consensus 212 ~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 212 ARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999854
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.8e-42 Score=383.69 Aligned_cols=208 Identities=22% Similarity=0.380 Sum_probs=171.1
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCCC
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~l 243 (1436)
.++|+|||++|++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++.+... ++.++||+|++.++ +.
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SD 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SS
T ss_pred CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCC-CC
Confidence 45899999999999999999999999999999999999998 9999999999887654 36799999998765 67
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+|||.|+... .+.+.+.+++...+... ....|++..||.+|+.+
T Consensus 107 Ti~eNi~~g~~~-------------------------~~~~~~~~al~~~~l~~--------~i~~lp~gl~t~i~~~g- 152 (255)
T d2hyda1 107 TVKENILLGRPT-------------------------ATDEEVVEAAKMANAHD--------FIMNLPQGYDTEVGERG- 152 (255)
T ss_dssp BHHHHHGGGCSS-------------------------CCHHHHHHHHHHTTCHH--------HHHTSTTGGGCBCCGGG-
T ss_pred CHHHHHhccCcC-------------------------CCHHHHHHHHHHhCCHH--------HHHhccccccchhcCCC-
Confidence 999999987321 11122223322222111 12357888999999765
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.+|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++ |+|.++|... ....||+|++|++|
T Consensus 153 ~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~-TvI~itH~~~-~~~~~D~ii~l~~G 228 (255)
T d2hyda1 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DR-TTLIVAHRLS-TITHADKIVVIENG 228 (255)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TS-EEEEECSSGG-GTTTCSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CC-EEEEEeCCHH-HHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998643 44 5555777765 45789999999999
Q ss_pred eEEEecChhHHHH
Q 046196 404 QIVYQGPRENVLE 416 (1436)
Q Consensus 404 ~iv~~G~~~~~~~ 416 (1436)
+|+++|+++|+++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999975
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.5e-42 Score=379.95 Aligned_cols=205 Identities=22% Similarity=0.353 Sum_probs=173.9
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc----ceEEEecCCCCcCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ----RTSAYISQNDLHIG 241 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~~~~~~ 241 (1436)
++++|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....+. ..++|++|+..+++
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCC
Confidence 356999999999999999999999999999999999999998 99999999998765432 34899999999999
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHh-CCcccccccccC
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKIL-GLEVCADTMVGD 320 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 320 (1436)
.+||+||+.++........ ......+.+++.+ +|++..|..++
T Consensus 95 ~ltv~en~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~- 138 (240)
T d1ji0a_ 95 ELTVYENLMMGAYNRKDKE-----------------------------------GIKRDLEWIFSLFPRLKERLKQLGG- 138 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSS-----------------------------------HHHHHHHHHHHHCHHHHTTTTSBSS-
T ss_pred cccHHHHHHHHHHhcCCHH-----------------------------------HHHHHHHHHHHHhhChHHHHhCchh-
Confidence 9999999988764322110 0011223344444 57777776654
Q ss_pred cccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEe
Q 046196 321 EMLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILL 400 (1436)
Q Consensus 321 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL 400 (1436)
.|||||||||+|||||+.+|++|||||||+|||+.++.++++.++++.+ .+++|+.++|+..++.++||||++|
T Consensus 139 ----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~~tH~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 139 ----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp ----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999865 3567777899999999999999999
Q ss_pred cCCeEEEecChhHHH
Q 046196 401 SDGQIVYQGPRENVL 415 (1436)
Q Consensus 401 ~~G~iv~~G~~~~~~ 415 (1436)
++|+++++|+++++.
T Consensus 213 ~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 213 ETGQIVLEGKASELL 227 (240)
T ss_dssp ETTEEEEEEEHHHHH
T ss_pred ECCEEEEEcCHHHHh
Confidence 999999999999985
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-41 Score=375.40 Aligned_cols=208 Identities=25% Similarity=0.285 Sum_probs=181.9
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc--cceEEEecCCCCcCCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP--QRTSAYISQNDLHIGEM 243 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~~~~~~~l 243 (1436)
++++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||||++.+++++
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCCc
Confidence 456999999999999999999999999999999999999998 9999999998765322 36799999999999999
Q ss_pred CHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 046196 244 TVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEML 323 (1436)
Q Consensus 244 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 323 (1436)
||+||+.|...+.+... .+....++.+++.++|.+..+..++
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 132 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS---- 132 (238)
T ss_dssp BHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG----
T ss_pred cHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHhCCCHHHHhhhhh----
Confidence 99999999876543210 1122345678899999988876664
Q ss_pred ccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCC
Q 046196 324 RGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDG 403 (1436)
Q Consensus 324 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G 403 (1436)
.|||||||||+||+||+++|++|||||||+|||+.++.++.+.++++.. .+++|+.++|+.+++..+||||++|++|
T Consensus 133 -~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~--~g~tii~~tH~l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 133 -TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRIALIHNG 209 (238)
T ss_dssp -GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999865 3567777899999999999999999999
Q ss_pred eEEEecChhHHHHH
Q 046196 404 QIVYQGPRENVLEF 417 (1436)
Q Consensus 404 ~iv~~G~~~~~~~~ 417 (1436)
++++.|+++++.+.
T Consensus 210 ~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 210 TIVETGTVEELKER 223 (238)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEEcCHHHHHhc
Confidence 99999999999764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.1e-42 Score=385.31 Aligned_cols=217 Identities=23% Similarity=0.256 Sum_probs=187.2
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|++.++ ++.++|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEec
Confidence 36788887665 34569999999999999999999999999999999999987 5799999999987
Q ss_pred Cccc----ccceEEEeecCCCCCCCCcHHHHHHHHHHhcC----------CCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 046196 918 NQET----FARISGYCEQTDIHSPHVTVYESLVYSAWLRL----------PPEVDSDTRKMFVEEVMELVELNPIREALV 983 (1436)
Q Consensus 918 ~~~~----~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~----------~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~ 983 (1436)
.... .++.++|++|++.+++++||+||+.++...+. ......++..++++++++.+++.+..++.+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence 5322 23348999999999999999999988643321 111233455567889999999999888775
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEE
Q 046196 984 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL 1063 (1436)
Q Consensus 984 g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1063 (1436)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+.+ ++.+.||||++
T Consensus 149 -----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEE
Confidence 479999999999999999999999999999999999999999999999888999999999998 68899999999
Q ss_pred EecCcEEEEEcCC
Q 046196 1064 MKRGGEEIYVGPL 1076 (1436)
Q Consensus 1064 l~~Gg~~~y~G~~ 1076 (1436)
|++ |++++.|++
T Consensus 223 m~~-G~iv~~g~~ 234 (254)
T d1g6ha_ 223 MFN-GQIIAEGRG 234 (254)
T ss_dssp EET-TEEEEEEES
T ss_pred EeC-CEEEEEecH
Confidence 996 799999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.4e-42 Score=383.30 Aligned_cols=220 Identities=26% Similarity=0.354 Sum_probs=183.0
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc----ceEEEecCCCCcCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ----RTSAYISQNDLHIG 241 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~~~~~~ 241 (1436)
..++|+||||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....+. +.++|++|++.+++
T Consensus 16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~ 92 (254)
T d1g6ha_ 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92 (254)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCC
Confidence 356999999999999999999999999999999999999998 99999999999776653 34999999999999
Q ss_pred CCCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 046196 242 EMTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDE 321 (1436)
Q Consensus 242 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 321 (1436)
++||+||+.++....+..... ..-. ....+ ...+....++.+++.+++++..|+.++
T Consensus 93 ~ltv~enl~~~~~~~~~~~~~-------~~~~-~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 149 (254)
T d1g6ha_ 93 EMTVLENLLIGEICPGESPLN-------SLFY-KKWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAG-- 149 (254)
T ss_dssp GSBHHHHHHGGGTSTTSCHHH-------HHHH-CSSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred CCeeeeeeeehhhhccccchh-------hhhh-hcccc-------------cHHHHHHHHHHHHHhcCcchhccCchh--
Confidence 999999999986543221100 0000 00000 011122345678999999988887765
Q ss_pred ccccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEec
Q 046196 322 MLRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLS 401 (1436)
Q Consensus 322 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~ 401 (1436)
.|||||||||+|||||+.+|++|||||||+|||+.++.+|.+.++++.. .+++|+.++|+.+++.++||||++|+
T Consensus 150 ---~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 150 ---ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMF 224 (254)
T ss_dssp ---GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred ---hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 4999999999999999999999999999999999999999999999854 46777779999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 046196 402 DGQIVYQGPRENVLE 416 (1436)
Q Consensus 402 ~G~iv~~G~~~~~~~ 416 (1436)
+|+|+++|+++|+.+
T Consensus 225 ~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTEEEEEEESHHHHH
T ss_pred CCEEEEEecHHHHhh
Confidence 999999999998754
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-41 Score=378.61 Aligned_cols=230 Identities=22% Similarity=0.352 Sum_probs=183.2
Q ss_pred CCCCceeEEeeceeEEEEEecCCCcCCCchhhHHHHHHHHhhhhcccCCCCCcceeeecceEEEeCCeEEEEEcCCCCCH
Q 046196 114 LDIPTIEVRFEHLNVEAEAYIGSRALPTVFNSCANMLEGFLNYLHVLPSRKKPLTILHDVSGIIKPQRLTLLLGPPSSGK 193 (1436)
Q Consensus 114 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 193 (1436)
++.++.+++|+|+++.+. .++.++|+|||++|++||+++|+|||||||
T Consensus 7 ~~~~~g~I~~~nvsf~Y~--------------------------------~~~~~~L~~isl~i~~Ge~iaivG~sGsGK 54 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYP--------------------------------GREVPALRNINLKIPAGKTVALVGRSGSGK 54 (253)
T ss_dssp CSCCCCCEEEEEEEECSS--------------------------------SSSCCSEEEEEEEECTTCEEEEEECTTSSH
T ss_pred cCCCceEEEEEEEEEEeC--------------------------------CCCCceeeceEEEEcCCCEEEEECCCCChH
Confidence 344556799999987752 122458999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCCcCCCCCHHHHHHhhhhhcCCCCchhhhhhhhH
Q 046196 194 TTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIGEMTVRETLAFSARCQGVGPRYEVLQELSR 270 (1436)
Q Consensus 194 STLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~ 270 (1436)
|||+++|+|+++|+ +|+|.++|.++.+.... +.++||+|++.++ ..|+++|+.++....
T Consensus 55 STLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~~~~-------------- 116 (253)
T d3b60a1 55 STIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLF-NDTVANNIAYARTEE-------------- 116 (253)
T ss_dssp HHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTTTSC--------------
T ss_pred HHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccC-CcchhhhhhhcCccc--------------
Confidence 99999999999998 99999999999876543 5799999998755 569999999873211
Q ss_pred HHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhhhhHHHHHHHHhcCCceeEEe
Q 046196 271 REKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGISGGQRKRLTTGEMLVGPARALFMD 350 (1436)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLD 350 (1436)
.+.+.+.+++...+... .+ -.|++..||.+|+. +.+|||||||||+|||||+.+|+||+||
T Consensus 117 ----------~~~~~i~~a~~~~~l~~------~i--~~l~~gl~t~~~~~-~~~LSGGqkQRvaiARal~~~p~ililD 177 (253)
T d3b60a1 117 ----------YSREQIEEAARMAYAMD------FI--NKMDNGLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILILD 177 (253)
T ss_dssp ----------CCHHHHHHHHHTTTCHH------HH--HHSTTGGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ----------CCHHHHHHHHHHHhHHH------HH--HhccccchhhhcCC-CCCcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 11122222222222111 11 13667789999875 4579999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEEEecChhHHHH
Q 046196 351 EISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIVYQGPRENVLE 416 (1436)
Q Consensus 351 EptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv~~G~~~~~~~ 416 (1436)
||||+||+.++..|++.|+++.+ ++|+|.++|+... .+.||+|++|++|+|+++|+++|+++
T Consensus 178 Epts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~-~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 178 EATSALDTESERAIQAALDELQK---NRTSLVIAHRLST-IEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGG-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHhcc---CCEEEEEECCHHH-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998743 4556667888754 57899999999999999999999975
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.9e-42 Score=375.52 Aligned_cols=193 Identities=24% Similarity=0.383 Sum_probs=173.1
Q ss_pred cceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc-ccccceEEEeecCCCCCCCCcHHHHHHH
Q 046196 869 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ-ETFARISGYCEQTDIHSPHVTVYESLVY 947 (1436)
Q Consensus 869 ~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~~ 947 (1436)
||||+++ ||+++|+||||||||||+++|+|..+ |.+|+|.++|.++.. ...++.+|||+|++.++|++||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999995 68999999999999999999999987 579999999998754 2345679999999999999999999998
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHH
Q 046196 948 SAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1027 (1436)
Q Consensus 948 ~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~ 1027 (1436)
+. + ..+..+++++++++++.+||.+..+.. +..|||||||||+|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~-----~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCC-----hhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 63 2 345667778899999999999988876 4589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1028 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1028 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
.+++.|+++.++ |.|||++||+++ ++..+|||+++|++ |+++..|.+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH
Confidence 999999999765 999999999986 68889999999996 799999975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.4e-42 Score=384.53 Aligned_cols=210 Identities=21% Similarity=0.340 Sum_probs=169.3
Q ss_pred cceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccc---cceEEEecCCCCcCCC
Q 046196 166 PLTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVP---QRTSAYISQNDLHIGE 242 (1436)
Q Consensus 166 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~~~~~~~ 242 (1436)
..++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+++
T Consensus 14 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 89 (242)
T d1mv5a_ 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA- 89 (242)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCC-
Confidence 346999999999999999999999999999999999999998 9999999999877554 467999999998665
Q ss_pred CCHHHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 046196 243 MTVRETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEM 322 (1436)
Q Consensus 243 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 322 (1436)
.||+||+.++..... +.+...++....... -....+++..+|.+|+.+
T Consensus 90 ~ti~eNi~~~~~~~~------------------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~g 137 (242)
T d1mv5a_ 90 GTIRENLTYGLEGDY------------------------TDEDLWQVLDLAFAR--------SFVENMPDQLNTEVGERG 137 (242)
T ss_dssp EEHHHHTTSCTTSCS------------------------CHHHHHHHHHHHTCT--------TTTTSSTTGGGCEESTTS
T ss_pred cchhhheeccccccc------------------------chhhHHHHHHHHHhh--------hhhccCcccccccccCCC
Confidence 499999988643211 001111111110000 012346778899998765
Q ss_pred cccCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 323 LRGISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
.+|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ +.+++.++|+... ...||+|++|++
T Consensus 138 -~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~-~~~~D~i~vl~~ 212 (242)
T d1mv5a_ 138 -VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK---GRTTLVIAHRLST-IVDADKIYFIEK 212 (242)
T ss_dssp -BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT---TSEEEEECCSHHH-HHHCSEEEEEET
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC---CCEEEEEECCHHH-HHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998753 4556667887754 467999999999
Q ss_pred CeEEEecChhHHHH
Q 046196 403 GQIVYQGPRENVLE 416 (1436)
Q Consensus 403 G~iv~~G~~~~~~~ 416 (1436)
|+|+++|+++|+++
T Consensus 213 G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 213 GQITGSGKHNELVA 226 (242)
T ss_dssp TEECCCSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999975
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-41 Score=372.24 Aligned_cols=211 Identities=27% Similarity=0.428 Sum_probs=172.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.|+|+||+|+++ .+.+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1 eI~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CeEEEEEEEEeC-----------CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEe
Confidence 378999999874 134569999999999999999999999999999999999987 5799999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------cccccccccCCC
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVEL-------NPIREALVGLPG 987 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l-------~~~~~~~~g~~~ 987 (1436)
.. ..+++.++||+|++.++ +.||+||+.+.. ...+.++ +.+.++..++ ..-.++.+|..
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTT-
T ss_pred cccchhhhhceEEEEecccccC-CccccccccccC-----ccccHHH----HHHHHHHHhhHHHHHhhhcchhhhcCCC-
Confidence 53 44677899999998776 469999997642 1223222 2333333333 23345555543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecC
Q 046196 988 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRG 1067 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~G 1067 (1436)
+..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ |+|||++||+++ ....+|+|++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEEC-
Confidence 468999999999999999999999999999999999999999999999864 899999999986 4578999999995
Q ss_pred cEEEEEcCC
Q 046196 1068 GEEIYVGPL 1076 (1436)
Q Consensus 1068 g~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999985
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2e-41 Score=375.20 Aligned_cols=210 Identities=26% Similarity=0.420 Sum_probs=172.1
Q ss_pred eEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCC
Q 046196 839 ITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKN 918 (1436)
Q Consensus 839 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 918 (1436)
++++||+|+++ +.+.+|+||||+|++||++||+||||||||||+++|+|..+ |.+|+|.+||.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEec
Confidence 68999999874 23469999999999999999999999999999999999987 56999999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCC
Q 046196 919 Q---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELN-------PIREALVGLPGV 988 (1436)
Q Consensus 919 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~-------~~~~~~~g~~~~ 988 (1436)
. ..+++.+|||+|++.+++. ||+||+.+.. ......+. +++.++..++. +..++.+|.. .
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheeccc----ccccchhh----HHHHHHHHHhhhhhccCcccccccccCC-C
Confidence 4 4467789999999988875 9999996542 11222222 23444444433 2334555543 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 989 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
.+|||||||||+|||||+++|+||+||||||+||+.++..+++.|+++. +|+|||++||+++ ....||+|++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999986 4899999999964 4567999999996 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
Confidence 99999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-41 Score=372.28 Aligned_cols=216 Identities=23% Similarity=0.325 Sum_probs=173.4
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.|+|+||+|+++. ..++.+|+||||+|++||++||+||||||||||+++|+|..+ |.+|+|.+||.++
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECCC----------CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEec
Confidence 5999999998742 123469999999999999999999999999999999999987 5799999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCcccccccccCCCCC
Q 046196 918 NQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMF-----VEEVMELVELNPIREALVGLPGVS 989 (1436)
Q Consensus 918 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~vl~~l~l~~~~~~~~g~~~~~ 989 (1436)
.. ..+++.++||+|++.+++ .||+||+.++.. .........+. ..+.++ ++.+-.++.++. .+.
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~-~~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDE-AGS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCS-SCS
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhc----ccchHHHHHHHHHHHHHHHHHH--hccccchhhHhc-cCc
Confidence 44 345678999999998875 699999987521 11222211111 112222 333334555553 346
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEecCc
Q 046196 990 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKRGG 1068 (1436)
Q Consensus 990 ~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg 1068 (1436)
.||||||||++|||||+++|+||+||||||+||+.+...+++.|+++.++ |+|||++||+++ ..+.||+|++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-T
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-C
Confidence 89999999999999999999999999999999999999999999998654 899999999964 5678999999996 7
Q ss_pred EEEEEcCC
Q 046196 1069 EEIYVGPL 1076 (1436)
Q Consensus 1069 ~~~y~G~~ 1076 (1436)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.3e-40 Score=368.29 Aligned_cols=213 Identities=25% Similarity=0.376 Sum_probs=176.0
Q ss_pred CceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCc
Q 046196 836 PHSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGY 915 (1436)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 915 (1436)
...|+|+|++|+++. ..+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCE
Confidence 346999999998742 23569999999999999999999999999999999999987 57999999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 046196 916 PKNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNP-------IREALVGL 985 (1436)
Q Consensus 916 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~ 985 (1436)
++.. ..+++.++||+|++.+++ .||+||+.|+. + ....+ .+.++++..++.+ -.++.+|.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC----c-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8643 456788999999987764 69999997652 2 22222 2455666666543 23444443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEe
Q 046196 986 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMK 1065 (1436)
Q Consensus 986 ~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1065 (1436)
...+||||||||++|||||+++|+||+||||||+||+.+...+++.|+++.+ ++|||++||+++ ....||+|++|+
T Consensus 151 -~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 -RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIE 226 (255)
T ss_dssp -GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred -CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEEE
Confidence 2467999999999999999999999999999999999999999999999864 899999999986 457899999998
Q ss_pred cCcEEEEEcCC
Q 046196 1066 RGGEEIYVGPL 1076 (1436)
Q Consensus 1066 ~Gg~~~y~G~~ 1076 (1436)
+ |+++..|+.
T Consensus 227 ~-G~iv~~G~~ 236 (255)
T d2hyda1 227 N-GHIVETGTH 236 (255)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
Confidence 5 899999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4e-40 Score=367.10 Aligned_cols=213 Identities=21% Similarity=0.315 Sum_probs=174.3
Q ss_pred ceeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCcc
Q 046196 837 HSITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYP 916 (1436)
Q Consensus 837 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 916 (1436)
..|+|+||+|.++. ....+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred eEEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcc
Confidence 46999999998742 23469999999999999999999999999999999999987 569999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046196 917 KNQ---ETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPI-------REALVGLP 986 (1436)
Q Consensus 917 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~ 986 (1436)
+.. ..+++.++||+|++.++. .|+++|+.+.. +...+.+ .++++++..++.+. .++.++.
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~- 148 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGE- 148 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCT-
T ss_pred cchhhhhhhhheEEEEeeccccCC-cchhhhhhhcC----cccCCHH----HHHHHHHHHhHHHHHHhccccchhhhcC-
Confidence 754 346677999999987764 69999998642 2222322 23445554444332 2444543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 987 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 987 ~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
.+.+|||||||||+|||||+++|+||+||||||+||+.+...|++.|+++.+ ++|||++||+++ ....||+|++|++
T Consensus 149 ~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~ 225 (253)
T d3b60a1 149 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED 225 (253)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEEC
Confidence 3568999999999999999999999999999999999999999999999864 899999999976 4578999999996
Q ss_pred CcEEEEEcCC
Q 046196 1067 GGEEIYVGPL 1076 (1436)
Q Consensus 1067 Gg~~~y~G~~ 1076 (1436)
|+++..|+.
T Consensus 226 -G~Iv~~G~~ 234 (253)
T d3b60a1 226 -GIIVERGTH 234 (253)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999986
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-38 Score=358.75 Aligned_cols=198 Identities=22% Similarity=0.323 Sum_probs=159.4
Q ss_pred ceeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHH
Q 046196 167 LTILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVR 246 (1436)
Q Consensus 167 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~ 246 (1436)
.+||+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++| .++|++|++++++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC----------EEEEEeccccccC-ceee
Confidence 46999999999999999999999999999999999999998 99999998 4899999998765 5999
Q ss_pred HHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 046196 247 ETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGI 326 (1436)
Q Consensus 247 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 326 (1436)
||+.|+..... .++ +...+.+. .......+++..+|.+|+.+ .+|
T Consensus 115 eni~~~~~~~~--~~~---------------------~~~~~~~~-----------~~~~i~~l~~~~~~~~~~~~-~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYDE--YRY---------------------KSVVKACQ-----------LQQDITKFAEQDNTVLGEGG-VTL 159 (281)
T ss_dssp HHHTTTSCCCH--HHH---------------------HHHHHHTT-----------CHHHHTTSTTGGGCEECTTC-TTS
T ss_pred ccccccccccc--hHH---------------------HHHHHHHH-----------hHHHHHhchhhhhhhhhhhc-cCC
Confidence 99998743210 000 01111111 01234567778889988654 469
Q ss_pred ChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCeEE
Q 046196 327 SGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQIV 406 (1436)
Q Consensus 327 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~iv 406 (1436)
||||||||+|||||+.+|+||+|||||++||+.+..++++.+.... ..++++|.++|+. +....||+|++|++|+|+
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~--~~~~tvi~itH~~-~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL--MANKTRILVTSKM-EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC--TTTSEEEEECSCH-HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh--hCCCEEEEEechH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999987643322 2344556577776 556889999999999999
Q ss_pred EecChhHHHH
Q 046196 407 YQGPRENVLE 416 (1436)
Q Consensus 407 ~~G~~~~~~~ 416 (1436)
++|+++|++.
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHhc
Confidence 9999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-37 Score=343.26 Aligned_cols=193 Identities=23% Similarity=0.353 Sum_probs=167.0
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCc---ccccceEEEeecCCCCCCCCcHH
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQ---ETFARISGYCEQTDIHSPHVTVY 942 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~ 942 (1436)
.|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|+++.. ...+...+|++|+.......+++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 6999999999999999999999999999999999753 57999999998643 23345679999988777788999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCcceee
Q 046196 943 ESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1015 (1436)
Q Consensus 943 e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~-------~p~illlD 1015 (1436)
+++.+... . +.+.+.++++++.+++.+..+..+ +.|||||||||+|||+|++ +|+||+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccc----h----hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 99876431 1 223455789999999998777653 5799999999999999997 77999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1016 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1016 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+||+++|++ |++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999989999999999986 68899999999995 799999975
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-36 Score=334.43 Aligned_cols=197 Identities=23% Similarity=0.346 Sum_probs=168.4
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCcccc---ceEEEecCCCCcCCCCCH
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQ---RTSAYISQNDLHIGEMTV 245 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~~~~~~~lTV 245 (1436)
+|+||||+|++||+++|+||||||||||+++|+|+. |+ +|+|.++|+++....+. ...+|++|+.......++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCccccH
Confidence 699999999999999999999999999999999975 45 89999999988765543 357999999877778899
Q ss_pred HHHHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 046196 246 RETLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRG 325 (1436)
Q Consensus 246 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 325 (1436)
.+++.++..-+ .....++++++.++|++..+..+ +.
T Consensus 90 ~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~-----~~ 125 (231)
T d1l7vc_ 90 WHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRST-----NQ 125 (231)
T ss_dssp HHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBG-----GG
T ss_pred HHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcCh-----hh
Confidence 99998753210 01123456788899988777555 46
Q ss_pred CChhhhhHHHHHHHHhc-------CCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 326 ISGGQRKRLTTGEMLVG-------PARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 326 LSGGqkqRvsia~al~~-------~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.++++.. .+++|+.++|+.+++.++||||+
T Consensus 126 LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~--~g~tii~vtHdl~~~~~~~dri~ 203 (231)
T d1l7vc_ 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRAW 203 (231)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH--TTCEEEECCCCHHHHHHHCSBCC
T ss_pred cCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHCCEEE
Confidence 99999999999999986 6799999999999999999999999999865 36677778999999999999999
Q ss_pred EecCCeEEEecChhHHH
Q 046196 399 LLSDGQIVYQGPRENVL 415 (1436)
Q Consensus 399 vL~~G~iv~~G~~~~~~ 415 (1436)
+|++|+++++|+++|+.
T Consensus 204 vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 204 LLKGGKMLASGRREEVL 220 (231)
T ss_dssp BEETTEECCCSBHHHHS
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999999884
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-36 Score=343.22 Aligned_cols=186 Identities=21% Similarity=0.360 Sum_probs=151.6
Q ss_pred ccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHH
Q 046196 864 LEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYE 943 (1436)
Q Consensus 864 ~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 943 (1436)
+++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+ ++|++|++.+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECCE----------EEEEeccccccC-ceeec
Confidence 469999999999999999999999999999999999987 57999999983 799999988876 49999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-------CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 046196 944 SLVYSAWLRLPPEVDSDTRKMFVEEVMELV-------ELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1016 (1436)
Q Consensus 944 ~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l-------~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDE 1016 (1436)
|+.|+. ..+... .+++++.. .+.+..++.++.. ..+|||||||||+|||||+++|+||+|||
T Consensus 116 ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred cccccc------cccchH----HHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 997642 122221 23333333 3334445555432 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1017 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1017 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
||++||+.+...+++.+.+....|+|+|+++|++ +....||+|++|++ |++++.|+.
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~ 241 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTF 241 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECH
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999876444445689999999996 45688999999996 799999986
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.8e-36 Score=323.45 Aligned_cols=195 Identities=19% Similarity=0.286 Sum_probs=160.9
Q ss_pred eeEEecccceeecchhhhccCCCCccccccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccC
Q 046196 838 SITFDDIRYALDMPQEMKAQGIPDDRLEFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPK 917 (1436)
Q Consensus 838 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 917 (1436)
.++++|+++.++ +++|+||||+|++||++||+||||||||||+++|+|..+ |.+|+|.+||.++
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEeh
Confidence 378889887653 258999999999999999999999999999999999987 5799999999987
Q ss_pred CcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046196 918 NQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRK 997 (1436)
Q Consensus 918 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrq 997 (1436)
.. .+..++|++|+..+++.+|++|++.+.+.++... .+. +.+.+.++.+++.++.+. +..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~------~~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKKK------LGELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTSB------GGGSCHHHHH
T ss_pred hH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCc-cCH----HHHHHHHHHcCCcccccc------cCcCCCcHHH
Confidence 53 4567899999999999999999999887765332 222 225667888887665433 3479999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhCeEEEEec
Q 046196 998 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFDAFDELLLMKR 1066 (1436)
Q Consensus 998 Rl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1066 (1436)
|++|||+|+.+|++++|||||+|||+.++..+++.|+++.++ |.+||++.|+. ..||.+.+|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 999999999999999999999999999999999999998765 44444444443 46999988865
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.9e-34 Score=309.44 Aligned_cols=183 Identities=19% Similarity=0.234 Sum_probs=150.0
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCCCCHHH
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGEMTVRE 247 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~lTV~E 247 (1436)
++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+. +..++|++|+..+...+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeecccCCCCcCHHH
Confidence 5999999999999999999999999999999999999998 99999999988653 457999999999899999999
Q ss_pred HHHhhhhhcCCCCchhhhhhhhHHHHHccCCCCCcHHHHHHHhhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 046196 248 TLAFSARCQGVGPRYEVLQELSRREKAANIKPDPDIDLIMKAASLEGQEKNVVTDYVLKILGLEVCADTMVGDEMLRGIS 327 (1436)
Q Consensus 248 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 327 (1436)
++.+.....+.... . ..+...++.+++.+. +..+ ..||
T Consensus 90 ~l~~~~~~~~~~~~---------------------~---------------~~~~~~l~~~~~~~~-~~~~-----~~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVN---------------------K---------------NEIMDALESVEVLDL-KKKL-----GELS 127 (200)
T ss_dssp HHHHHHHHTTCCCC---------------------H---------------HHHHHHHHHTTCCCT-TSBG-----GGSC
T ss_pred HHHHHHHhcCCccC---------------------H---------------HHHHHHHHHcCCccc-cccc-----CcCC
Confidence 99987665432110 0 112234566666443 2233 4699
Q ss_pred hhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecC
Q 046196 328 GGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSD 402 (1436)
Q Consensus 328 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~ 402 (1436)
|||||||+||++|+.+|+++||||||+|||+.++..+++.++++.+. ++++|++.+|+. ++||.+.+|++
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999999999999999998764 456666555543 57999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.33 E-value=6.1e-14 Score=146.82 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=61.1
Q ss_pred cCChhhhhHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEEEecCCe
Q 046196 325 GISGGQRKRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLILLSDGQ 404 (1436)
Q Consensus 325 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iivL~~G~ 404 (1436)
.+|+|+++|.++++++..+|+++++|||.. +......+.+.+.+.... .+++++.++|.. +...++|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~--~~~~~~~~~~~l~~~l~~-~~~~il~~~h~~-~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGK--MELFSKKFRDLVRQIMHD-PNVNVVATIPIR-DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCST--TGGGCHHHHHHHHHHHTC-TTSEEEEECCSS-CCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCc--cchhhHHHHHHHHHHhcc-CCCEEEEEEccH-HHHHhhceEEEEeCCE
Confidence 489999999999999999999999999843 333445566666665443 345555555544 5677899999999999
Q ss_pred EEEec
Q 046196 405 IVYQG 409 (1436)
Q Consensus 405 iv~~G 409 (1436)
++.-+
T Consensus 157 i~~v~ 161 (178)
T d1ye8a1 157 LIELT 161 (178)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 98754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=2.2e-13 Score=142.46 Aligned_cols=161 Identities=15% Similarity=0.043 Sum_probs=96.7
Q ss_pred EEEEEccCCCChhHHHHhHcCCCCCCceeEEEEECCccCCcccccceEEEeecCCCCCCCCcHHHHHHHHHHhcCCCCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKTGGYVSGSITISGYPKNQETFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVD 958 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~~~~~l~~~~~~~ 958 (1436)
.++|+||||||||||+++|+|... +..|.+.+.+.+...... ..++..............+. ........
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIFSSKF------FTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC--------CCEEEEEETTCCEEEEEETT------CCCSSEET
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHHH--hhhhhhhhhhHHHHHHhhhh------hhhhhhhh
Confidence 479999999999999999999876 458888888765322211 11221111000000000000 00000000
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh
Q 046196 959 SDTRKMFVEEVMELVELNPIREALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1038 (1436)
Q Consensus 959 ~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~LSgGqrqRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~ 1038 (1436)
..+.. .+ ...+|+|+++|.++++++..+|++|++|||+... .....+.+.+.++.+
T Consensus 72 -------------~~~~~--~~-------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 -------------SYGVN--VQ-------YFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TEEEC--HH-------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHT
T ss_pred -------------hhhcC--cc-------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhc
Confidence 00000 00 1137999999999999999999999999985443 334555566666544
Q ss_pred -CCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCC
Q 046196 1039 -TGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPL 1076 (1436)
Q Consensus 1039 -~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~ 1076 (1436)
.+.++|+++|+.. ....+|++..+.+ |+++.-++.
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~i~~~~~-~~i~~v~~~ 163 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKEIRRLPG-AVLIELTPE 163 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHHHHTCTT-CEEEECCTT
T ss_pred cCCCEEEEEEccHH--HHHhhceEEEEeC-CEEEEECCc
Confidence 4889999999865 4567888888774 677766553
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.71 E-value=7.9e-08 Score=108.62 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHHHHHHH----hhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEE
Q 046196 988 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLL 1063 (1436)
Q Consensus 988 ~~~LSgGqrqRl~iA~aL----~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1063 (1436)
...+|+|||+.+.++..+ ..+|+++++|||-++|||.....+.+.|++..+ +.-||+|||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 356899999998887764 346789999999999999999999999999864 578999999985 6688999866
Q ss_pred E
Q 046196 1064 M 1064 (1436)
Q Consensus 1064 l 1064 (1436)
+
T Consensus 294 v 294 (308)
T d1e69a_ 294 V 294 (308)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=2e-07 Score=105.26 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=60.6
Q ss_pred cccCChhhhhHHHHHHH----HhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 323 LRGISGGQRKRLTTGEM----LVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~a----l~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
...+|+|||+...++.. ...+++++++|||-++|++.....+.+.|++... .+-++ ++.|++++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~---~~Qvi-itTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFI-VITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEE-EECCCTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc---CCEEE-EEECCHHHHHhcccEE
Confidence 45699999999887654 3456789999999999999999999999998643 34454 3455678889999986
Q ss_pred E--ecCC
Q 046196 399 L--LSDG 403 (1436)
Q Consensus 399 v--L~~G 403 (1436)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 4566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=3.6e-07 Score=107.60 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEE
Q 046196 989 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLM 1064 (1436)
Q Consensus 989 ~~LSgGqrqRl~iA~aL----~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1064 (1436)
..+|||||.++++|..+ ..++++++||||+++||+.....+.+.|+++...+.-+|+|||+| .+.+.+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 45899999998887554 356779999999999999999999999998866566799999996 478899998755
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.85 E-value=1.1e-05 Score=94.35 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=59.2
Q ss_pred cccCChhhhhHHHHHHHH----hcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHhcccEE
Q 046196 323 LRGISGGQRKRLTTGEML----VGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYELFDDLI 398 (1436)
Q Consensus 323 ~~~LSGGqkqRvsia~al----~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 398 (1436)
+..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++. ..+-+|+++| .+++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I~iTH-~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISL-KNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECS-CHHHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEeC-CHHHHHhcccEE
Confidence 356899999998887433 467889999999999999999999999988642 3455555555 467999999977
Q ss_pred Ee
Q 046196 399 LL 400 (1436)
Q Consensus 399 vL 400 (1436)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.34 E-value=0.00042 Score=73.38 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=34.5
Q ss_pred hHHHHHHHHhcCCceeEEeCCCCCCChHHHHHHHHHHHHHHHhcCCeEEEEEecCchhHHHh
Q 046196 332 KRLTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQSIHILNGTAVISLLQPAPETYEL 393 (1436)
Q Consensus 332 qRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 393 (1436)
+|++-..-.+++..++++||+.+|=|+.....+...+-+.-...+..+++ .+|. .++..+
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~-tTH~-~eL~~l 162 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLF-ATHY-FELTAL 162 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-ECCC-HHHHTC
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEE-eeec-hhhhhh
Confidence 33333333345567999999999999988766554433322223455555 4444 344443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00062 Score=72.61 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=30.1
Q ss_pred hcCCceeEEeCCCCCCChHHHHHHHHH-HHHHHHhcCCeEEEEEecC
Q 046196 341 VGPARALFMDEISTGLDSSTTYQIVNS-LRQSIHILNGTAVISLLQP 386 (1436)
Q Consensus 341 ~~~~~illLDEptsgLD~~t~~~i~~~-l~~~~~~~~~t~ii~i~q~ 386 (1436)
..+..++++||+.+|=|+.....+... ++.+... .+..++..||.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~-~~~~~i~tTH~ 163 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-IKALTLFATHY 163 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhcc-ccceEEEecch
Confidence 445579999999999999998887655 4555443 33333434443
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.24 E-value=0.0011 Score=70.19 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCC
Q 046196 997 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQP 1050 (1436)
Q Consensus 997 qRl~iA~aL~~~p~illlDEPTsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~ 1050 (1436)
+|+.-....+.+.+++++||+.+|=|+.....+.. .++.+.+.+..++++||..
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~ 157 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence 33333333445667999999999999977665554 4555667788999999984
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.0015 Score=69.44 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=35.9
Q ss_pred HhhCCCcceeeCCCCCCCHHHHHHHHH-HHHHHHhC-CCEEEEEecCCC
Q 046196 1005 LVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPS 1051 (1436)
Q Consensus 1005 L~~~p~illlDEPTsgLD~~~~~~i~~-~l~~~~~~-g~tvi~~~H~~~ 1051 (1436)
-+.+.+++++||+.+|=|+.....+.. .++.+..+ +..+++++|...
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 355567999999999999988877654 46667554 568999999754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.83 E-value=0.00065 Score=74.36 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=29.5
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
+-|+++.+-+.||+++.|.|++|+|||||+.-|+-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34666666689999999999999999999887763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.39 E-value=0.00082 Score=70.65 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEE
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVT 215 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 215 (1436)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 47889999999999999999999876543 56664
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.0008 Score=67.28 Aligned_cols=25 Identities=36% Similarity=0.311 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.26 E-value=0.0011 Score=66.73 Aligned_cols=27 Identities=44% Similarity=0.554 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.|++++|.|||||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.21 E-value=0.013 Score=63.42 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=29.7
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
+-|+++.+=+.||+++.|.|+||+|||||+.-|+-.
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 346666555899999999999999999998888743
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.06 E-value=0.0066 Score=64.35 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=26.8
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+=+++|+++.|.||||||||||+.-++-..
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999998886553
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.05 E-value=0.0012 Score=67.55 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
|+++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.04 E-value=0.001 Score=66.81 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGH 219 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~ 219 (1436)
++++|+|++|||||||++.|...+......-|.|..+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 478999999999999999998887653222344444443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.03 E-value=0.0015 Score=68.62 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=24.9
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEE
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSIT 911 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~ 911 (1436)
+|..++++|+||+|||||+|.|.|... ...|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh--hhccCcc
Confidence 588999999999999999999998643 2346554
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.00018 Score=74.26 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=28.9
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 170 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 56777788776 99999999999999999997544
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.0013 Score=65.76 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+.+.++.|+|||||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998763
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.02 Score=61.69 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=31.1
Q ss_pred HhcCCceeEEeCCCC---C--CChHHHHHHHHHHHHHHHhcCCeEEEEEecCc
Q 046196 340 LVGPARALFMDEIST---G--LDSSTTYQIVNSLRQSIHILNGTAVISLLQPA 387 (1436)
Q Consensus 340 l~~~~~illLDEpts---g--LD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 387 (1436)
...+++++++|--++ + -|.....++++.|+.++...+ .+++.+||..
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~~vi~v~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCC-Cceehhhhcc
Confidence 346889999996543 2 244556678888888877554 5555577754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.00075 Score=68.25 Aligned_cols=27 Identities=41% Similarity=0.604 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 458899999999999999999988654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.79 E-value=0.00086 Score=70.70 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEE
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVT 215 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 215 (1436)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 36788999999999999999999876543 57765
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.00021 Score=73.82 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=26.9
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHc
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 56667777776 89999999999999999996
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.75 E-value=0.0022 Score=64.34 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
++|.++.|+|+|||||||+-++|+-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999997764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.68 E-value=0.0021 Score=65.55 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.8
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
|.++.|+||||||||||++.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999998654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0022 Score=63.97 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.012 Score=63.55 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=32.9
Q ss_pred HhhCCCcceeeCCCC-----CCCHHHHHHHHHHHHHHHhC-CCEEEEEecC
Q 046196 1005 LVANPSIIFMDEPTS-----GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1049 (1436)
Q Consensus 1005 L~~~p~illlDEPTs-----gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~ 1049 (1436)
-..+|+++++|--++ --|......+++.|+++++. |++||++.|.
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 356899999996542 12556667788888877654 8999999884
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.53 E-value=0.0031 Score=61.75 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G 202 (1436)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998854
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.53 E-value=0.0026 Score=64.13 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+.++|.||+|||||||.+.|+-.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998753
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.49 E-value=0.0031 Score=63.16 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999764
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.43 E-value=0.0028 Score=63.11 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+++|.|||||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999775
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.34 E-value=0.0039 Score=62.35 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|-.++|.|||||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356788999999999999999998775
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.28 E-value=0.0017 Score=68.43 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=22.4
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCCCCceeEEEE
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYVSGSIT 911 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~~~~~~G~i~ 911 (1436)
+|..++++|+||+|||||+|.|.|... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 477889999999999999999998643 2356554
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0044 Score=64.50 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+|.++.|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999976643
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.18 E-value=0.0038 Score=62.35 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999999875
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.13 E-value=0.0042 Score=61.87 Aligned_cols=22 Identities=55% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|+|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998765
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.12 E-value=0.0042 Score=63.74 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999986
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0055 Score=63.21 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=26.9
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+=+++|+++.|.||||||||||+..++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999998887654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.0045 Score=61.66 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.9
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.96 E-value=0.12 Score=53.52 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=26.6
Q ss_pred ccccc-eEEEeCCeEEEEEccCCCChhHHHHhHc
Q 046196 866 FLKGV-SGAFRPGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 866 iL~~v-s~~i~~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
-|+++ .+-+++|+++.|.|++|+|||||..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 35554 3579999999999999999999975443
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.83 E-value=0.0056 Score=61.23 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.1
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++|-++.|+|++||||||+-+.|+-++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999998654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.80 E-value=0.0064 Score=61.17 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
++++|.|++||||||+.+.|+-.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999877643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.79 E-value=0.0056 Score=62.78 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|++|||||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.75 E-value=0.0069 Score=62.01 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999998764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.71 E-value=0.0072 Score=61.67 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|-.++|+|||||||||..+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356678899999999999999999654
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.71 E-value=0.0044 Score=69.03 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.5
Q ss_pred ceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 173 VSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 173 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
+...++.|.-++|.||.||||||||++|++.++++
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 34445667779999999999999999999999875
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.71 E-value=0.006 Score=60.82 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=25.2
Q ss_pred EEEEEccCCCChhHHHHhHcCCCC-CCceeEEEEECC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRKT-GGYVSGSITISG 914 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g 914 (1436)
+++|+|++|||||||++.|...+. .|..-|.|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 689999999999999998876432 222344554443
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.71 E-value=0.0055 Score=62.93 Aligned_cols=28 Identities=29% Similarity=0.492 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++.+.++.|+|||||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566789999999999999999998764
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.0063 Score=63.25 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.5
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.|.++.|+||||+|||||++.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999999754
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.64 E-value=0.0069 Score=64.08 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+++|+||+|||||||++.|...+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999997644
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.0051 Score=62.69 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.|.++.|+|+|||||||+-+.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987764
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.55 E-value=0.0075 Score=60.12 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.3
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++|-.++|.||+||||||+.+.|+-..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356688999999999999999998654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.50 E-value=0.0065 Score=61.01 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|.||+|+|||||.+.|+...
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.0078 Score=58.96 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+.|+||+||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999988763
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.49 E-value=0.0086 Score=59.90 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|++|+|||||++.|+|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999863
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.43 E-value=0.0076 Score=60.86 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|++|+|||||+++|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999863
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.39 E-value=0.0061 Score=61.86 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999875
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.36 E-value=0.0084 Score=64.52 Aligned_cols=26 Identities=38% Similarity=0.386 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
..+++.||||||||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46889999999999999999998753
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.31 E-value=0.009 Score=58.22 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred eEEEEEccCCCChhHHHHhHcC
Q 046196 878 VLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g 899 (1436)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998753
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.26 E-value=0.011 Score=59.65 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G 202 (1436)
+-+++.++|+|||||||+.+.++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999998854
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.25 E-value=0.035 Score=59.39 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.5
Q ss_pred CeEEEEEccCCCChhHHHHhHcCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
..-+.+.||+|+|||+|.+.|+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 344679999999999999999964
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.011 Score=60.53 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++.|+|||||||||+.+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.16 E-value=0.0099 Score=59.90 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998775
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.012 Score=57.91 Aligned_cols=24 Identities=42% Similarity=0.667 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
=.++|+|++|+|||||++.|.|.-
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999863
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.13 E-value=0.01 Score=60.28 Aligned_cols=24 Identities=38% Similarity=0.324 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999986654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.12 E-value=0.0094 Score=60.14 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.4
Q ss_pred EEEEccCCCChhHHHHhHcCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++|+|++|+|||||+|.|+|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.01 Score=61.17 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|++|||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999885
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.09 E-value=0.0073 Score=61.25 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.7
Q ss_pred EEEEccCCCChhHHHHhHcCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.98 E-value=0.012 Score=60.03 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+++|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.012 Score=57.90 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.3
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
|=.++|+|++|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.87 E-value=0.011 Score=60.08 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+.|+|||||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36699999999999999998765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.85 E-value=0.013 Score=58.35 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.6
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
..++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999997653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.83 E-value=0.012 Score=57.48 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.014 Score=59.00 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+.+.|+||+|||||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.013 Score=59.71 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
++|+||||||||||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.81 E-value=0.025 Score=60.24 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.7
Q ss_pred EEEEccCCCChhHHHHhHcCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.+.||+|+|||+|.++|++..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999643
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.79 E-value=0.013 Score=57.99 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.2
Q ss_pred eEEEEEccCCCChhHHHHhHcCCC
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998654
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.78 E-value=0.0098 Score=59.99 Aligned_cols=21 Identities=38% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
+||+|++|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999886
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.76 E-value=0.015 Score=58.54 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.015 Score=61.28 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
|=+++|+++.|.||||||||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999999999999887643
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.71 E-value=0.014 Score=58.89 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+.|+|||||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999775
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.015 Score=58.18 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|.+|+|||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.70 E-value=0.014 Score=58.37 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.012 Score=58.84 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+.|.||+|+|||||++.++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999754
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.68 E-value=0.014 Score=57.86 Aligned_cols=23 Identities=43% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+.|+|++||||||+.++|+-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999998763
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.66 E-value=0.011 Score=59.22 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|++|+|||||++.|.|..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999998764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.66 E-value=0.013 Score=57.15 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999853
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.015 Score=58.24 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|.+|+|||||+|.|+|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999863
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.60 E-value=0.013 Score=58.09 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=18.9
Q ss_pred EEEEccCCCChhHHHHhHcCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+.|+||+||||||+.+.|+-+
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999854
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.57 E-value=0.012 Score=62.02 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.56 E-value=0.013 Score=59.46 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++||-|++|||||||.+.|+-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.51 E-value=0.014 Score=58.50 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|++|||||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998753
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.44 E-value=0.019 Score=58.03 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|++|+|||||+++|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999985
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.38 E-value=0.016 Score=57.01 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|+|++|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998763
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.37 E-value=0.018 Score=59.27 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+++++|.||||||||.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999997653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.37 E-value=0.03 Score=58.80 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=29.0
Q ss_pred eec-ceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 170 LHD-VSGIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 170 L~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
|++ +.+=+++|+++.|.|+||+|||||..-++-..
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455 34569999999999999999999988887544
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.37 E-value=0.012 Score=59.37 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEccCCCChhHHHHhHcCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+||+|++|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=0.015 Score=59.21 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEEccCCCChhHHHHhHcCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997543
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.34 E-value=0.014 Score=58.88 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
+++.|.|++||||||+.+.|+..+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46778999999999999999988753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.33 E-value=0.017 Score=58.95 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+.|+||||||||||.+.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999977654
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.018 Score=57.98 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.+.|+|||||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999998664
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.27 E-value=0.018 Score=58.79 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999998765
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.27 E-value=0.018 Score=58.05 Aligned_cols=22 Identities=59% Similarity=0.877 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+.|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.25 E-value=0.05 Score=58.49 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.8
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+..-+.|.||+|+|||+|.++|++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34447799999999999999999754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.018 Score=58.26 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHhHcCC
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999998854
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.22 E-value=0.018 Score=58.00 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+.|+|||||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.21 E-value=0.019 Score=57.77 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.21 E-value=0.02 Score=57.75 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=21.1
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+||+|.+|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.015 Score=58.39 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|++++|||||+|.|+|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.17 E-value=0.019 Score=56.78 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|++|||||||++.|.|..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 37899999999999999998864
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.17 E-value=0.019 Score=57.29 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+.|+|++||||||+-+.|+-.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999987753
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.13 E-value=0.019 Score=57.94 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|++.||||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999875
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.11 E-value=0.024 Score=60.02 Aligned_cols=27 Identities=44% Similarity=0.506 Sum_probs=24.1
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALA 201 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~ 201 (1436)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 458999999999999999999987664
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.10 E-value=0.019 Score=57.52 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred eEEEEEccCCCChhHHHHhHcCC
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999854
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.012 Score=59.69 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.7
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.|-++.|+|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999854
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.018 Score=56.25 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.012 Score=59.09 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|++++|||||+|+|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998863
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.03 E-value=0.016 Score=56.48 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999753
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.97 E-value=0.021 Score=56.66 Aligned_cols=23 Identities=48% Similarity=0.690 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+.++|++||||||+-+.|+-.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999999999998764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.83 E-value=0.018 Score=59.27 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.025 Score=57.91 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
+-+++|+++.|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999999999999887764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.75 E-value=0.023 Score=58.55 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.73 E-value=0.021 Score=58.35 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEEccCCCChhHHHHhHcCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+.|+||||||||||++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.71 E-value=0.019 Score=55.93 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+.|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999864
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.67 E-value=0.023 Score=63.11 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999986654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.61 E-value=0.024 Score=60.86 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999974
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.57 E-value=0.027 Score=58.37 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++|.|||||||||+-+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999998874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.55 E-value=0.025 Score=57.53 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHHhHcC
Q 046196 878 VLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++.|+||+||||||+-+.|+-
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999984
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.028 Score=58.15 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++|-|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.34 E-value=0.023 Score=55.79 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.30 E-value=0.0096 Score=58.59 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|++|+|||||+++|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.27 E-value=0.03 Score=58.12 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++|-|||||||||.-+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999998874
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.034 Score=58.68 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=26.0
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 046196 174 SGIIKPQRLTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 174 s~~i~~G~~~~llGp~GsGKSTLL~~L~G 202 (1436)
.+=+++|+++.|.||||||||||...++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred cCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999999988864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.22 E-value=0.027 Score=55.76 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEccCCCChhHHHHhHcCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.|+|++||||||+-+.|+...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999998654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.17 E-value=0.03 Score=56.74 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=22.3
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
++|-.+.|+||+||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3677888999999999999999984
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.11 E-value=0.036 Score=55.13 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999885
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.029 Score=58.00 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++||-|++||||||+-+.|+-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.07 E-value=0.033 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999998853
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.01 E-value=0.028 Score=56.56 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEccCCCChhHHHHhHcCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+||+|+.+||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.99 E-value=0.037 Score=57.59 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=26.9
Q ss_pred eeecc-eEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 046196 169 ILHDV-SGIIKPQRLTLLLGPPSSGKTTLLLALA 201 (1436)
Q Consensus 169 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~ 201 (1436)
-|+++ ++=+++|+++.|.|+||+|||||..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 35553 4569999999999999999999986544
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=0.04 Score=60.34 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCCCCcCCC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQNDLHIGE 242 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~~~~~~~ 242 (1436)
+++|.|++||||||+.+.|...+.... ....+..+++++.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~-----------------~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP-----------------EHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST-----------------TCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc-----------------CCCceEEEeeeeeECCc
Confidence 889999999999999999987764320 01246778888887653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.92 E-value=0.03 Score=60.00 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.86 E-value=0.03 Score=59.38 Aligned_cols=25 Identities=48% Similarity=0.741 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
...+|.||||+||||+.++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.035 Score=56.54 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.5
Q ss_pred CeEEEEEccCCCChhHHHHhHcCCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
-.++.|+||+||||||+-+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998643
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.70 E-value=0.013 Score=57.68 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|++|+|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.63 E-value=0.033 Score=61.39 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
|+.-++++||||+|||+|.++|+..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc
Confidence 334567899999999999999999764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.54 E-value=0.039 Score=61.02 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.52 E-value=0.029 Score=57.14 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.8
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+.+.++.|+||+||||||+-+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.52 E-value=0.03 Score=58.99 Aligned_cols=23 Identities=57% Similarity=0.872 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++.||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.48 E-value=0.039 Score=58.07 Aligned_cols=26 Identities=46% Similarity=0.667 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGKD 207 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~~ 207 (1436)
.+++.||||+||||+.++|+..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 36899999999999999999887643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.42 E-value=0.031 Score=56.64 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999843
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.045 Score=56.63 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
++|.+++|-|+.||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999988764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.35 E-value=0.044 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred CCeEEEEEccCCCChhHHHHhHc
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
+-+++.++|++||||||+.+-++
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999886
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.35 E-value=0.042 Score=57.52 Aligned_cols=22 Identities=59% Similarity=0.819 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+.|.||||+||||+.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998865
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.32 E-value=0.037 Score=59.17 Aligned_cols=28 Identities=39% Similarity=0.606 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
+..-+++.||||+|||++.++|+..+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~~ 71 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcCC
Confidence 4456789999999999999999987653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.29 E-value=0.032 Score=61.85 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=27.5
Q ss_pred ceEEEeCCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 870 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 870 vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
+...++.|.-+.|.|+.||||||||++|.+..+
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 344566777789999999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.28 E-value=0.049 Score=56.10 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+.+++++||+|+||||.+-=|+-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999888887654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.26 E-value=0.042 Score=54.18 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3679999999999999988654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.23 E-value=0.041 Score=55.97 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.19 E-value=0.054 Score=56.00 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=30.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGM 221 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 221 (1436)
+.|.++-+.|.||||||||.+.|.-.+.... -.-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchHH
Confidence 4678899999999999999999986553210 012456676543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.15 E-value=0.041 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHhHcCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.|+|++||||||+-+.|+-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.15 E-value=0.042 Score=54.71 Aligned_cols=22 Identities=55% Similarity=0.656 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++++|++|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999664
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.10 E-value=0.044 Score=54.82 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.8
Q ss_pred EEEEccCCCChhHHHHhHcCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+.|+||+||||||+-+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999743
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.07 E-value=0.047 Score=58.02 Aligned_cols=25 Identities=44% Similarity=0.573 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.-+++.||||+|||+|.++|+....
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 4578999999999999999998753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.05 E-value=0.047 Score=57.25 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
+++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999875
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.99 E-value=0.039 Score=59.38 Aligned_cols=29 Identities=38% Similarity=0.637 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++..-++|.||+|+|||+|.++|++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 33455688999999999999999999864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.99 E-value=0.045 Score=54.83 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++.|.|++||||||+.+.|+.++
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999998654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.95 E-value=0.044 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHhHcCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.|+|++||||||+-+.|+.++
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.92 E-value=0.047 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.047 Score=55.38 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
++.|+||+||||||.-+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.85 E-value=0.051 Score=55.06 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 046196 182 LTLLLGPPSSGKTTLLLALA 201 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~ 201 (1436)
+++|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999985
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.81 E-value=0.048 Score=62.29 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.68 E-value=0.054 Score=57.66 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.++.++|.||+|+|||||++.++-...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 457899999999999999999876543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.64 E-value=0.052 Score=53.81 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.58 E-value=0.051 Score=55.55 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++.++|.+|||||||.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.55 E-value=0.054 Score=53.85 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.50 E-value=0.061 Score=55.40 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+|.+++|-|+.||||||+.+.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.48 E-value=0.05 Score=57.81 Aligned_cols=24 Identities=50% Similarity=0.714 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
-+++.||||+|||+|.++|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEecCCCCChhHHHHHHHHHcC
Confidence 368999999999999999998753
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.42 E-value=0.043 Score=56.36 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.36 E-value=0.057 Score=54.25 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+.|+||+||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999854
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.26 E-value=0.12 Score=51.45 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=27.4
Q ss_pred eeeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 046196 168 TILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 168 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 202 (1436)
..+|.....+ .|.=+++.|++|+|||||...|.-
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3466555555 889999999999999999988854
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.26 E-value=0.052 Score=60.11 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.5
Q ss_pred CCeEEEEEccCCCChhHHHHhHcC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
..-.+||.||+|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.22 E-value=0.06 Score=53.02 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 046196 183 TLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G 202 (1436)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.049 Score=57.11 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998874
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.17 E-value=0.057 Score=53.27 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.14 E-value=0.061 Score=53.63 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987664
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.07 E-value=0.054 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.7
Q ss_pred eEEEEEccCCCChhHHHHhHcCCCC
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
..+.|.||+|+|||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999998653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.06 E-value=0.058 Score=57.71 Aligned_cols=24 Identities=46% Similarity=0.703 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
=+++.||||+|||+|.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 378999999999999999999754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.05 E-value=0.084 Score=51.67 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=25.8
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 177 IKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 177 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+||.++++-|+=|||||||.+.++.-+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 45899999999999999999999987654
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.96 E-value=0.069 Score=55.13 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.3
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++|-++.|.|.||||||||-+.|.-+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999743
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.92 E-value=0.074 Score=56.43 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
...++|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999988754
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.92 E-value=0.063 Score=55.58 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+++|.||+||||||+-+.|+-.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999954
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.90 E-value=0.081 Score=54.47 Aligned_cols=26 Identities=38% Similarity=0.339 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
..+++++||+|+||||.+--|+-.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999988887654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.83 E-value=0.058 Score=61.56 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.1
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+||+|.+|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999964
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.74 E-value=0.065 Score=54.21 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHHhHc
Q 046196 879 LTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~ 898 (1436)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.72 E-value=0.065 Score=53.58 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.+.|+||+||||||..+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999984
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.70 E-value=0.07 Score=52.96 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++++|++|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.67 E-value=4 Score=43.04 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 180 QRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 180 G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
..+++|.|..|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998654
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.66 E-value=0.079 Score=55.32 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
+-+++|+++.|.|++|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999999999877753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.63 E-value=0.077 Score=53.32 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=89.62 E-value=0.06 Score=53.00 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.56 E-value=0.072 Score=52.95 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.49 E-value=0.077 Score=54.58 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=20.6
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+.+++++||+|+||||.+-=|+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999987777643
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.49 E-value=0.074 Score=55.52 Aligned_cols=22 Identities=50% Similarity=0.901 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
..+-||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999875
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.46 E-value=0.074 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEEccCCCChhHHHHhHcCCC
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
-+++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.45 E-value=0.093 Score=56.12 Aligned_cols=31 Identities=39% Similarity=0.503 Sum_probs=27.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+=+++|++|.|.||||||||||+..++-...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 6789999999999999999999888876643
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.39 E-value=0.072 Score=52.47 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.33 E-value=0.089 Score=52.25 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 046196 183 TLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G 202 (1436)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.30 E-value=0.087 Score=54.41 Aligned_cols=26 Identities=31% Similarity=0.384 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+-.+++++||+|+||||.+--||-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44588999999999999988887665
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.27 E-value=0.077 Score=53.09 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+.|+||+||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999843
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.19 E-value=0.085 Score=53.66 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
++|+|...+|||||+++|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998643
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.13 E-value=0.08 Score=54.66 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.1
Q ss_pred eCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 875 RPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 875 ~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+.|-+++|-|+-||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999998764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.12 E-value=0.089 Score=51.98 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.07 E-value=0.1 Score=60.21 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCccccceEEEecCC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGKDLKFSGRVTYNGHGMEEFVPQRTSAYISQN 236 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~ 236 (1436)
=++++||+|||||-|.+.||+.++-. =+..++-..+ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP-----Fv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP-----FIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC-----EEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC-----EEEeecceee------ecceeecc
Confidence 47799999999999999999987632 2444443332 37898876
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.04 E-value=0.08 Score=52.45 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999987653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.01 E-value=0.085 Score=51.97 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999999765
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.00 E-value=0.071 Score=52.78 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.5
Q ss_pred EEEEccCCCChhHHHHhHcC
Q 046196 880 TALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g 899 (1436)
++++|.+|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.00 E-value=0.078 Score=58.55 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=21.7
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
..-.+||.||.|||||||++.|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999853
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.92 E-value=0.081 Score=52.40 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.89 E-value=0.099 Score=51.62 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.89 E-value=0.082 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
..++|+|++|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHhC
Confidence 35889999999999999998653
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=88.86 E-value=0.086 Score=53.44 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+.|+||+||||||+-+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999854
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=88.81 E-value=0.096 Score=53.97 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=18.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
...+++++||+|+||||.+-=|+-.+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446799999999999999888886653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.74 E-value=0.09 Score=52.75 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 046196 183 TLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G 202 (1436)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.74 E-value=0.073 Score=55.66 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++||+|..+||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4899999999999999999864
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=88.73 E-value=0.097 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+++++||+|+||||.+-=||-.+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999988887654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.71 E-value=0.087 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+++|.||+||||||+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999653
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.68 E-value=0.09 Score=52.63 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+.|+||.||||||+.+.|+-.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999853
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.66 E-value=0.077 Score=52.67 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|++|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3789999999999999998754
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.66 E-value=0.065 Score=53.67 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 669999999999999998544
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=88.61 E-value=0.052 Score=60.34 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
-++|.||||+|||||.+.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 5799999999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=0.094 Score=51.62 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.54 E-value=0.075 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|++|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999988763
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.51 E-value=0.069 Score=57.64 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=17.0
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7999999999999999998753
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.41 E-value=0.18 Score=50.27 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=26.5
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.||. +...-.|.=+++.|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3554 344557889999999999999999887653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.38 E-value=0.097 Score=52.15 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.37 E-value=0.12 Score=53.34 Aligned_cols=28 Identities=36% Similarity=0.326 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
+|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999887754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.32 E-value=0.18 Score=50.37 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHhHcCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.32 E-value=0.1 Score=59.50 Aligned_cols=29 Identities=38% Similarity=0.599 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLGK 206 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 206 (1436)
.++-+++|.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 46679999999999999999999887754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=0.097 Score=51.29 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998754
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.14 E-value=0.11 Score=53.25 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 046196 182 LTLLLGPPSSGKTTLLLALA 201 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~ 201 (1436)
+++|.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.11 E-value=0.11 Score=54.04 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+.+-||+|+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 67899999999999999987653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.11 E-value=0.11 Score=51.02 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 046196 183 TLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G 202 (1436)
++|+|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.06 E-value=0.11 Score=51.10 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.5
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++++|++|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999997774
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.06 E-value=0.094 Score=54.73 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.5
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 871 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 871 s~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.+-+++|+++.|.|++|+|||||..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35699999999999999999999877763
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.04 E-value=0.1 Score=51.81 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 046196 183 TLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G 202 (1436)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.01 E-value=0.11 Score=54.03 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+.+.||+|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999865
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.00 E-value=0.099 Score=54.61 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.6
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
++.+++|-|+-||||||+++.|+....
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999997653
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.99 E-value=0.14 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.92 E-value=0.082 Score=52.48 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46699999999999999997543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.82 E-value=0.093 Score=52.17 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++++|++|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.82 E-value=0.1 Score=52.86 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999987754
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.81 E-value=0.095 Score=52.38 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++++|++|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.74 E-value=0.12 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988763
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.70 E-value=0.085 Score=56.29 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
++.|.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998763
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.67 E-value=0.13 Score=53.90 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=23.8
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHc
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
+-+++|+++.|.||+|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 469999999999999999999976553
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.66 E-value=0.08 Score=52.59 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=8.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.61 E-value=0.13 Score=50.18 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=24.5
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
..+||.+++|-|+=||||||+.+.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 346999999999999999999999985
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.56 E-value=0.1 Score=53.76 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=20.2
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+-.+++++||+|+||||.+-=||-+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999987777643
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.45 E-value=0.13 Score=52.73 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.2
Q ss_pred CeEEEEEccCCCChhHHHHhHcCC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
..++.++||+|+||||.+-=|+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998888754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.30 E-value=0.14 Score=52.62 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 046196 182 LTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G 202 (1436)
+++|.|++||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999853
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=0.13 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.++|+|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998854
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.27 E-value=0.21 Score=49.33 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=27.3
Q ss_pred eeecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 046196 169 ILHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 169 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
-|+. ++..-.|.=++|.|++|+|||||...|.-+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4555 555668999999999999999998877544
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=87.25 E-value=0.11 Score=56.62 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++||.|++||||||+-+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHH
Confidence 7899999999999998888754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.24 E-value=0.13 Score=50.65 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 046196 183 TLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G 202 (1436)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.19 E-value=0.12 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.17 E-value=0.1 Score=58.49 Aligned_cols=28 Identities=46% Similarity=0.519 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 178 KPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 178 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+.+..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5667999999999999999999999874
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.15 E-value=0.11 Score=54.65 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 046196 183 TLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
++|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.12 E-value=0.13 Score=50.55 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 046196 183 TLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G 202 (1436)
++|+|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999875
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.11 E-value=0.14 Score=53.44 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
+-+++|.++.|.|++|+|||||..-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 5699999999999999999999877763
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.09 E-value=0.1 Score=51.28 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999865
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.01 E-value=0.12 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.89 E-value=0.14 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.88 E-value=0.084 Score=56.91 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++|.|++||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999977653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.86 E-value=0.096 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|++|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987553
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.84 E-value=0.12 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++++|++|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3789999999999999987653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.84 E-value=0.12 Score=53.73 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHhHcCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+.|.||+|+|||||.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=86.81 E-value=0.14 Score=52.52 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHHhHc
Q 046196 879 LTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~ 898 (1436)
++||.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.79 E-value=0.14 Score=52.62 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.|.+++|-|+-||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999854
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.73 E-value=0.13 Score=50.88 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987653
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.65 E-value=0.22 Score=49.62 Aligned_cols=34 Identities=32% Similarity=0.290 Sum_probs=26.5
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.|+.....+ .|.=+.|.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 355555555 7888999999999999999887643
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.57 E-value=0.14 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999987654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=86.54 E-value=0.14 Score=52.61 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=16.2
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.-.+++++||+|+||||.+-=|+-+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999997777743
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.50 E-value=0.15 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.45 E-value=0.14 Score=50.55 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.41 E-value=0.12 Score=51.64 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.40 E-value=0.15 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988754
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.40 E-value=0.13 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999998764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.39 E-value=0.16 Score=51.62 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999988764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.39 E-value=0.12 Score=51.10 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.32 E-value=0.17 Score=54.58 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+++|-|++|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998885543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.28 E-value=0.14 Score=54.10 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.6
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4568899999999999999988743
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.22 E-value=0.15 Score=50.18 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 046196 183 TLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G 202 (1436)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.13 E-value=0.13 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHhHcCCC
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.-+.++||+|+|||+|.++|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 345689999999999999999753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.09 E-value=0.16 Score=50.17 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.09 E-value=0.16 Score=50.10 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999998743
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=86.08 E-value=0.14 Score=52.64 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=19.6
Q ss_pred eEEEEEccCCCChhHHHHhHcCC
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+++++||+|+||||.+-=||-+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999988777743
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.05 E-value=0.17 Score=53.04 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.6
Q ss_pred EEEeCCeEEEEEccCCCChhHHHHhHc
Q 046196 872 GAFRPGVLTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 872 ~~i~~Ge~~ai~G~nGaGKSTLl~~L~ 898 (1436)
+-+++|.++.|.|++|+|||||.-.++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999999987775
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.97 E-value=0.14 Score=50.36 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.93 E-value=0.14 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++++|++|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988754
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.87 E-value=0.16 Score=52.03 Aligned_cols=22 Identities=36% Similarity=0.240 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
-++|+|+++||||||+++|.+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3789999999999999999653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.82 E-value=0.24 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=85.79 E-value=0.14 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=85.77 E-value=0.17 Score=49.90 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 046196 182 LTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G 202 (1436)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.72 E-value=0.17 Score=49.44 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.4
Q ss_pred EEEEccCCCChhHHHHhHcC
Q 046196 880 TALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g 899 (1436)
++++|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998874
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.70 E-value=0.14 Score=50.17 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998753
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.55 E-value=0.17 Score=55.62 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
+||+|.|-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999885
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.54 E-value=0.14 Score=54.66 Aligned_cols=30 Identities=37% Similarity=0.490 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
+=++.|+++.+.||+|||||||+..++...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence 568899999999999999999976666543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.51 E-value=0.15 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.50 E-value=0.18 Score=54.91 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|.-+||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.48 E-value=0.18 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++++|.+|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999988763
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.47 E-value=0.17 Score=52.12 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCeEEEEEccCCCChhHHHHhHcCCCC
Q 046196 876 PGVLTALMGVSGAGKTTLMDVLAGRKT 902 (1436)
Q Consensus 876 ~Ge~~ai~G~nGaGKSTLl~~L~g~~~ 902 (1436)
+|.+++|=|+-||||||+.+.|+-...
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 688999999999999999999986543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.46 E-value=0.19 Score=49.69 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.1
Q ss_pred EEEEccCCCChhHHHHhHcC
Q 046196 880 TALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g 899 (1436)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.40 E-value=0.16 Score=53.01 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHHhHcCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.+.||+|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhcc
Confidence 5799999999999999998644
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.37 E-value=0.18 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++|+|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.11 E-value=0.14 Score=54.69 Aligned_cols=31 Identities=45% Similarity=0.609 Sum_probs=27.8
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 175 GIIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 175 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
+=++.|++|-|-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 6789999999999999999999998887654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.08 E-value=0.14 Score=50.73 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=9.0
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=84.99 E-value=0.19 Score=51.53 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHHhHc
Q 046196 879 LTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~ 898 (1436)
++||.|..||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.71 E-value=0.2 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 181 RLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999999864
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.68 E-value=0.19 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
++.|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999998753
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.63 E-value=0.17 Score=49.66 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++|+|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.55 E-value=0.16 Score=50.12 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.4
Q ss_pred EEEEccCCCChhHHHHhHcC
Q 046196 880 TALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g 899 (1436)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.51 E-value=0.19 Score=50.70 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.4
Q ss_pred EEEEccCCCChhHHHHhHcC
Q 046196 880 TALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g 899 (1436)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999998775
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.46 E-value=0.2 Score=50.71 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEccCCCChhHHHHhHcCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+||+|.-.||||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999853
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.42 E-value=0.21 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977664
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.31 E-value=0.21 Score=48.90 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|.+|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999987654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=84.18 E-value=0.17 Score=52.99 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEccCCCChhHHHHhHcCCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+.+.||+|+||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999999999999643
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.11 E-value=0.2 Score=52.04 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEccCCCChhHHHHhHcCC
Q 046196 880 TALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 880 ~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
+.|-||+|+|||||.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999864
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=84.05 E-value=0.36 Score=47.89 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=22.7
Q ss_pred EEeCCeEEEEEccCCCChhHHHHhHcCC
Q 046196 873 AFRPGVLTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 873 ~i~~Ge~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
-.-.|.=+.|.|+||+|||||.-.|..+
T Consensus 10 v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 10 VDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3446778999999999999998877643
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.02 E-value=0.24 Score=53.19 Aligned_cols=29 Identities=34% Similarity=0.541 Sum_probs=25.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 046196 176 IIKPQRLTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 176 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.|-.|+..+|+|++|+|||||+..|+...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999999998643
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.92 E-value=0.23 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.91 E-value=0.22 Score=49.27 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.79 E-value=0.2 Score=49.32 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.78 E-value=0.23 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 046196 182 LTLLLGPPSSGKTTLLLALAGKL 204 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~~ 204 (1436)
.++|+|.-+||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.78 E-value=0.22 Score=49.82 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 046196 183 TLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 183 ~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 789999999999999987653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.51 E-value=0.25 Score=49.73 Aligned_cols=20 Identities=45% Similarity=0.612 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 046196 182 LTLLLGPPSSGKTTLLLALA 201 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~ 201 (1436)
.++|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999984
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=83.43 E-value=0.25 Score=56.12 Aligned_cols=44 Identities=25% Similarity=0.426 Sum_probs=33.9
Q ss_pred HHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 046196 1001 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1051 (1436)
Q Consensus 1001 iA~aL~~~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1051 (1436)
+..+|=.+|++|++.|.. |+.++...+ +.+.+|..|+.|.|-.+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc
Confidence 445666799999999996 666666554 34667999999999765
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.35 E-value=0.23 Score=51.56 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999999764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.21 E-value=0.25 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|++|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998763
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.21 E-value=0.25 Score=48.49 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999874
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.19 E-value=0.25 Score=50.19 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.3
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
+++|-|.-||||||+++.|....
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.15 E-value=0.25 Score=53.13 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
++||-|+.|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 789999999999999987753
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.11 E-value=0.24 Score=53.15 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=27.9
Q ss_pred ccccceEEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 866 FLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 866 iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
+++-+ +.+-.|+..+|+|++|+|||||+..|+.
T Consensus 33 ~ID~l-~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 33 VLDLA-SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHHHH-SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred eeeec-ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 44433 5778999999999999999999999985
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=83.10 E-value=0.23 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
-+.|.||+|+|||+|.++|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4679999999999999999964
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.10 E-value=0.3 Score=53.45 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
|...++++||+|+|||.|.+.|+-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 445678999999999999999998764
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.04 E-value=0.24 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|+|++|+|||||++.+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999887654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.02 E-value=0.37 Score=49.04 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 179 PQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 179 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
|.=-++|+|...+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 333589999999999999999998754
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=82.99 E-value=0.26 Score=48.39 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.86 E-value=0.27 Score=48.32 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.4
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.83 E-value=0.23 Score=54.44 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.9
Q ss_pred EEEEEccCCCChhHHHHhHcCCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+||+|.+.+|||||+|+|+|..
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.67 E-value=0.26 Score=52.87 Aligned_cols=34 Identities=35% Similarity=0.662 Sum_probs=26.8
Q ss_pred cccccceEEEeCCeEEEEEccCCCChhHHHHhHcCCC
Q 046196 865 EFLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 865 ~iL~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
.+|+.++--| -+++|+||-++|||||||.|.|..
T Consensus 23 ~~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 3555554322 489999999999999999999864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.62 E-value=5.4 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred CeEEEEEccCCCChhHHHHhHcC
Q 046196 877 GVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 877 Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998853
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=82.60 E-value=0.29 Score=53.45 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=25.7
Q ss_pred eecceEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 046196 170 LHDVSGIIKPQRLTLLLGPPSSGKTTLLLALAGKLG 205 (1436)
Q Consensus 170 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 205 (1436)
.+-+-...+.| ..++.||||+|||.|.++|++.+.
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 33333344444 667789999999999999999863
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.45 E-value=0.28 Score=49.23 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEEccCCCChhHHHHhHc
Q 046196 879 LTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~ 898 (1436)
++.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999883
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.44 E-value=0.36 Score=51.59 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHH---hcCcCC
Q 046196 181 RLTLLLGPPSSGKTTLLLAL---AGKLGK 206 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L---~G~~~~ 206 (1436)
+-++|+|+.|||||||..+| +|..+.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 35799999999999999999 455443
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.44 E-value=0.28 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHhHcCCC
Q 046196 878 VLTALMGVSGAGKTTLMDVLAGRK 901 (1436)
Q Consensus 878 e~~ai~G~nGaGKSTLl~~L~g~~ 901 (1436)
..+.|.||+|+||||+++.|+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.42 E-value=0.24 Score=48.76 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.7
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.+.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 467999999999999998875
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.30 E-value=0.29 Score=50.61 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 046196 182 LTLLLGPPSSGKTTLLLALA 201 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~ 201 (1436)
.++|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999874
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=82.28 E-value=0.45 Score=46.89 Aligned_cols=32 Identities=31% Similarity=0.210 Sum_probs=24.7
Q ss_pred cccceEEEeCCeEEEEEccCCCChhHHHHhHcC
Q 046196 867 LKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 867 L~~vs~~i~~Ge~~ai~G~nGaGKSTLl~~L~g 899 (1436)
|+. ++-.-.|.=+.|.|+||+|||||.-.|..
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444 44455788899999999999999877654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.08 E-value=0.3 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 046196 182 LTLLLGPPSSGKTTLLLALAG 202 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G 202 (1436)
.++++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999986654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.02 E-value=0.28 Score=49.01 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
.++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 479999999999999998765
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.72 E-value=0.26 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999977653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=81.06 E-value=0.25 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999974
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.03 E-value=0.34 Score=50.05 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEEEccCCCChhHHHHhHc
Q 046196 879 LTALMGVSGAGKTTLMDVLA 898 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~ 898 (1436)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999874
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.88 E-value=0.35 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHhHcCC
Q 046196 879 LTALMGVSGAGKTTLMDVLAGR 900 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g~ 900 (1436)
.++|+|.+|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988653
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=80.80 E-value=0.34 Score=52.03 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 046196 182 LTLLLGPPSSGKTTLLLALAGK 203 (1436)
Q Consensus 182 ~~~llGp~GsGKSTLL~~L~G~ 203 (1436)
.++|||-|-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999975
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.76 E-value=0.32 Score=50.17 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=38.4
Q ss_pred CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhCeEEEEecCcEEEEEcCCCcchhHHHHHh
Q 046196 1008 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLMKRGGEEIYVGPLGRHCSQLIKYF 1087 (1436)
Q Consensus 1008 ~p~illlDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~Gg~~~y~G~~~~~~~~~~~yf 1087 (1436)
+.+++++||.- ++...+...+...+.+.. ....+++++++.+. +... +.++ -+.+.+.|+. ..++..+.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~--~~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS-NSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLS--DEDVLKRL 169 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT-TTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCC--HHHHHHHH
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccc-cceeeeeccCchhh-hhhH-----HHHH-HHHhhhcccc--hhhhHHHH
Confidence 36799999965 455555555555555432 34567777776542 2111 1122 3455666653 24555555
Q ss_pred hh
Q 046196 1088 EG 1089 (1436)
Q Consensus 1088 ~~ 1089 (1436)
..
T Consensus 170 ~~ 171 (224)
T d1sxjb2 170 LQ 171 (224)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.63 E-value=0.39 Score=51.13 Aligned_cols=21 Identities=52% Similarity=0.577 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 046196 181 RLTLLLGPPSSGKTTLLLALA 201 (1436)
Q Consensus 181 ~~~~llGp~GsGKSTLL~~L~ 201 (1436)
+-++|+|+.|||||||..+|.
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCcHHHHHHHHH
Confidence 357999999999999999994
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.27 E-value=0.35 Score=48.00 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.2
Q ss_pred EEEEEccCCCChhHHHHhHcC
Q 046196 879 LTALMGVSGAGKTTLMDVLAG 899 (1436)
Q Consensus 879 ~~ai~G~nGaGKSTLl~~L~g 899 (1436)
++.++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987654
|