Citrus Sinensis ID: 046200


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
LLQSSSEAAKLDSNYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRFDVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITINVTDPYKFSNILAQSFSDLIQNVTSRDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDSNICLRGAVAQIPNCCYGKR
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccEEcEEEcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccc
cHHHHHHHHcccccHHHcccccccccccccHHHHHHHHHHHHcccccccccccEEccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEEcccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccHEEEcccccccccEEEEEEEEcccccHHHHHHHHHHHHHHccHHccccc
llqssseaakldsnyvYHFCvresdtssgglfmfnVGTLFSAKLYNEAGrylysnategdypdkvyglyncrfdvsndvcQDCIKVAIHTIVTNCTGAKEAIVWYDQCMvrfcnssfpswletepsVALLITInvtdpykfsNILAQSFSDLIQNVtsrdfeypaaaQMVNASSIDKLRTLVQcipylsksdsniclrgavaqipnccygkr
llqssseaakldsnyVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRFDVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITINVTDPYKFSNILAQSFSDLIQNVTSRDFEYPAAAQMVNASSIDKLRTLVQCIPYLsksdsniclrgavaqipnccygkr
LLQSSSEAAKLDSNYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRFDVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITINVTDPYKFSNILAQSFSDLIQNVTSRDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDSNICLRGAVAQIPNCCYGKR
************SNYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRFDVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITINVTDPYKFSNILAQSFSDLIQNVTSRDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDSNICLRGAVAQIPNCCY***
LLQSSS*AAKLDSNYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRFDVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITINVTDPYKFSNILAQSFSDLIQNVTSRDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDSNICLRGAVAQIPNCCYGK*
LLQSSSEAAKLDSNYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRFDVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITINVTDPYKFSNILAQSFSDLIQNVTSRDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDSNICLRGAVAQIPNCCYGKR
LLQSSSEAAKLDSNYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRFDVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITINVTDPYKFSNILAQSFSDLIQNVTSRDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDSNICLRGAVAQIPNCCY***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LLQSSSEAAKLDSNYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRFDVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITINVTDPYKFSNILAQSFSDLIQNVTSRDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDSNICLRGAVAQIPNCCYGKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query212 2.2.26 [Sep-21-2011]
Q5Q0E2324 Cysteine-rich repeat secr yes no 0.915 0.598 0.353 2e-26
Q9M0X5 675 Cysteine-rich receptor-li no no 0.910 0.285 0.323 8e-24
Q8GYA4 669 Cysteine-rich receptor-li no no 0.896 0.284 0.356 4e-23
Q9LRJ9252 Cysteine-rich repeat secr no no 0.924 0.777 0.316 1e-21
O65482 830 Putative cysteine-rich re no no 0.905 0.231 0.320 2e-21
Q9SH41284 Putative cysteine-rich re no no 0.735 0.549 0.352 2e-21
Q9SH40284 Cysteine-rich repeat secr no no 0.834 0.623 0.342 5e-18
Q9SYB1 341 Cysteine-rich repeat secr no no 0.933 0.580 0.291 8e-18
Q9CAC7305 Cysteine-rich repeat secr no no 0.754 0.524 0.319 1e-17
Q8H199 658 Cysteine-rich receptor-li no no 0.825 0.265 0.327 2e-17
>sp|Q5Q0E2|CRR9_ARATH Cysteine-rich repeat secretory protein 9 OS=Arabidopsis thaliana GN=CRRSP9 PE=2 SV=1 Back     alignment and function desciption
 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 107/198 (54%), Gaps = 4/198 (2%)

Query: 14  NYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRF 73
           ++++  C   ++ +    +  N  TL  A L   +    YSNATEG  PD V+G++ CR 
Sbjct: 30  DHIFTVCNPTNNFTQTSSYETNRDTLL-ASLRESSSLGHYSNATEGLSPDTVHGMFLCRG 88

Query: 74  DVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITI 133
           D++   C DC++ A   I +NCT  K A+++YD+CMVR+ N SF S LE  PS+ +    
Sbjct: 89  DITTASCVDCVQTATTEIASNCTLNKRAVIYYDECMVRYSNVSFSSELEIVPSITIYSLR 148

Query: 134 NVTDPYKFSNILAQSFSDLIQNVTSRDF-EYPAAAQ--MVNASSIDKLRTLVQCIPYLSK 190
           +  +P +F+  L + FS+LI NV+S     Y    Q  +  +     L T+VQC P L  
Sbjct: 149 SAPNPTRFNQTLTEKFSELIFNVSSSSLVPYFVEDQERVTQSEGSYDLDTMVQCSPDLDI 208

Query: 191 SDSNICLRGAVAQIPNCC 208
            +  +CLR A  +I  CC
Sbjct: 209 FNCTVCLRVAFFRISTCC 226





Arabidopsis thaliana (taxid: 3702)
>sp|Q9M0X5|CRK25_ARATH Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1 Back     alignment and function description
>sp|Q8GYA4|CRK10_ARATH Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3 Back     alignment and function description
>sp|Q9LRJ9|CRR38_ARATH Cysteine-rich repeat secretory protein 38 OS=Arabidopsis thaliana GN=CRRSP38 PE=2 SV=1 Back     alignment and function description
>sp|O65482|CRK23_ARATH Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1 Back     alignment and function description
>sp|Q9SH41|CRR7_ARATH Putative cysteine-rich repeat secretory protein 7 OS=Arabidopsis thaliana GN=CRRSP7 PE=3 SV=2 Back     alignment and function description
>sp|Q9SH40|CRR8_ARATH Cysteine-rich repeat secretory protein 8 OS=Arabidopsis thaliana GN=CRRSP8 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYB1|CRR1_ARATH Cysteine-rich repeat secretory protein 1 OS=Arabidopsis thaliana GN=CRRSP1 PE=2 SV=3 Back     alignment and function description
>sp|Q9CAC7|CRR4_ARATH Cysteine-rich repeat secretory protein 4 OS=Arabidopsis thaliana GN=CRRSP4 PE=2 SV=2 Back     alignment and function description
>sp|Q8H199|CRK14_ARATH Cysteine-rich receptor-like protein kinase 14 OS=Arabidopsis thaliana GN=CRK14 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
255555035 671 ATP binding protein, putative [Ricinus c 0.933 0.295 0.402 3e-32
255555031 674 ATP binding protein, putative [Ricinus c 0.933 0.293 0.376 7e-32
359484134 665 PREDICTED: cysteine-rich receptor-like p 0.745 0.237 0.417 1e-29
297742701 792 unnamed protein product [Vitis vinifera] 0.745 0.199 0.417 1e-29
359477817 670 PREDICTED: cysteine-rich receptor-like p 0.981 0.310 0.398 2e-29
147853396 614 hypothetical protein VITISV_010567 [Viti 0.740 0.255 0.426 3e-29
296089261 615 unnamed protein product [Vitis vinifera] 0.740 0.255 0.420 5e-29
359484020 662 PREDICTED: cysteine-rich receptor-like p 0.740 0.237 0.420 6e-29
359496581 666 PREDICTED: cysteine-rich receptor-like p 0.910 0.289 0.367 1e-28
296088180 699 unnamed protein product [Vitis vinifera] 0.910 0.276 0.367 1e-28
>gi|255555035|ref|XP_002518555.1| ATP binding protein, putative [Ricinus communis] gi|223542400|gb|EEF43942.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 110/199 (55%), Gaps = 1/199 (0%)

Query: 15  YVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRFD 74
           Y YHFC   +  +    +  N+  + S+   N      + N   G  PD VYG + CR D
Sbjct: 28  YRYHFCSNTTTFTPNSTYQTNLNQVLSSLSNNANNSIGFFNIPSGQQPDDVYGSFLCRGD 87

Query: 75  VSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITIN 134
           VS DVCQDC+  A   IV  C   K AIVWYDQC++R+ N SF S ++  P V L  T +
Sbjct: 88  VSTDVCQDCVTFATQDIVKRCPIEKVAIVWYDQCLLRYENQSFISTMDQTPGVFLSNTQD 147

Query: 135 VTDPYKFSNILAQSFSDLIQNVTS-RDFEYPAAAQMVNASSIDKLRTLVQCIPYLSKSDS 193
           ++DP +F N+LA +  +L  + +S    E   AA   N ++  KL +LVQC P LS    
Sbjct: 148 ISDPDRFDNLLATTMENLATDASSAASGEKKFAATDDNFTAFQKLYSLVQCTPDLSNPGC 207

Query: 194 NICLRGAVAQIPNCCYGKR 212
             CLRGA++ +P+CC GKR
Sbjct: 208 RQCLRGAISNLPSCCGGKR 226




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555031|ref|XP_002518553.1| ATP binding protein, putative [Ricinus communis] gi|223542398|gb|EEF43940.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359484134|ref|XP_002269330.2| PREDICTED: cysteine-rich receptor-like protein kinase 10-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742701|emb|CBI35335.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477817|ref|XP_003632027.1| PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147853396|emb|CAN80208.1| hypothetical protein VITISV_010567 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089261|emb|CBI39033.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484020|ref|XP_002273323.2| PREDICTED: cysteine-rich receptor-like protein kinase 10-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496581|ref|XP_002270035.2| PREDICTED: cysteine-rich receptor-like protein kinase 10-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088180|emb|CBI35672.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:2031341324 AT1G63550 [Arabidopsis thalian 0.910 0.595 0.361 6.4e-28
TAIR|locus:2115728 675 CRK25 "cysteine-rich RLK (RECE 0.910 0.285 0.323 1.6e-25
TAIR|locus:2121676 669 CRK10 "cysteine-rich RLK (RECE 0.971 0.307 0.319 2.4e-24
TAIR|locus:2031311284 AT1G63570 "AT1G63570" [Arabido 0.900 0.672 0.338 1.1e-23
TAIR|locus:2095662252 AT3G22060 "AT3G22060" [Arabido 0.919 0.773 0.318 1.4e-23
TAIR|locus:2121626 830 CRK23 "cysteine-rich RLK (RECE 0.905 0.231 0.316 9.3e-23
TAIR|locus:2195778 341 AT1G61750 "AT1G61750" [Arabido 0.933 0.580 0.291 6.3e-21
TAIR|locus:2031381268 AT1G63590 "AT1G63590" [Arabido 0.882 0.697 0.326 1.2e-19
TAIR|locus:2155125286 AT5G41280 "AT5G41280" [Arabido 0.952 0.706 0.303 1.2e-19
TAIR|locus:2155130287 AT5G41290 [Arabidopsis thalian 0.891 0.658 0.304 1.2e-19
TAIR|locus:2031341 AT1G63550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 72/199 (36%), Positives = 109/199 (54%)

Query:    14 NYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGRYLYSNATEGDYPDKVYGLYNCRF 73
             ++++  C   ++ +    +  N  TL  A L   +    YSNATEG  PD V+G++ CR 
Sbjct:    30 DHIFTVCNPTNNFTQTSSYETNRDTLL-ASLRESSSLGHYSNATEGLSPDTVHGMFLCRG 88

Query:    74 DVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSFPSWLETEPSVALLITI 133
             D++   C DC++ A   I +NCT  K A+++YD+CMVR+ N SF S LE  PS+ +    
Sbjct:    89 DITTASCVDCVQTATTEIASNCTLNKRAVIYYDECMVRYSNVSFSSELEIVPSITIYSLR 148

Query:   134 NVTDPYKFSNILAQSFSDLIQNVTSRDFE--YPAAAQMVNAS--SIDKLRTLVQCIPYLS 189
             +  +P +F+  L + FS+LI NV+S      +    + V  S  S D L T+VQC P L 
Sbjct:   149 SAPNPTRFNQTLTEKFSELIFNVSSSSLVPYFVEDQERVTQSEGSYD-LDTMVQCSPDLD 207

Query:   190 KSDSNICLRGAVAQIPNCC 208
               +  +CLR A  +I  CC
Sbjct:   208 IFNCTVCLRVAFFRISTCC 226




GO:0005576 "extracellular region" evidence=ISM
GO:0031225 "anchored to membrane" evidence=TAS
GO:0006863 "purine nucleobase transport" evidence=RCA
TAIR|locus:2115728 CRK25 "cysteine-rich RLK (RECEPTOR-like protein kinase) 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121676 CRK10 "cysteine-rich RLK (RECEPTOR-like protein kinase) 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031311 AT1G63570 "AT1G63570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121626 CRK23 "cysteine-rich RLK (RECEPTOR-like protein kinase) 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195778 AT1G61750 "AT1G61750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031381 AT1G63590 "AT1G63590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155125 AT5G41280 "AT5G41280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155130 AT5G41290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
pfam01657106 pfam01657, Stress-antifung, Salt stress response/a 2e-19
pfam01657106 pfam01657, Stress-antifung, Salt stress response/a 2e-04
>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal Back     alignment and domain information
 Score = 79.4 bits (196), Expect = 2e-19
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 17  YHFCVRESD---TSSGGLFMFNVGTLFSAKLYNEA---GRYLYSNATEGDYPDKVYGLYN 70
           +H C   +    T++   F  N+  L S+ L + A       ++  T G  PD VYGL  
Sbjct: 1   FHLCSSNTSGNYTTANSTFESNLNALLSS-LSSNAASSSGKGFAAGTSGAAPDTVYGLAQ 59

Query: 71  CRFDVSNDVCQDCIKVAIHTIVTNCTGAKEAIVWYDQCMVRFCNSSF 117
           CR D+S   C+ C+  A+  +   C   K   +WYD C +R+ +  F
Sbjct: 60  CRGDLSASDCRSCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106


This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106

>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 212
PF01657106 Stress-antifung: Salt stress response/antifungal; 99.94
PF01657106 Stress-antifung: Salt stress response/antifungal; 99.63
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function Back     alignment and domain information
Probab=99.94  E-value=1.9e-27  Score=175.21  Aligned_cols=101  Identities=34%  Similarity=0.731  Sum_probs=77.6

Q ss_pred             ccCCC-C-CCcc-CCCchHHHHHHHHHHHHHhhccCC--CCeeeeecCCCCCeeeEEccccCCCChhhHHHHHHHHHHHH
Q 046200           17 YHFCV-R-ESDT-SSGGLFMFNVGTLFSAKLYNEAGR--YLYSNATEGDYPDKVYGLYNCRFDVSNDVCQDCIKVAIHTI   91 (212)
Q Consensus        17 ~~~C~-~-~~~~-~~~s~f~~nl~~ll~~L~~~a~~~--~~f~~~~~g~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~~   91 (212)
                      |+.|+ + ..++ +++++|+++|+.||..|+..++..  .+|+++..|.++++||||+||++||++.+|..||+.++..+
T Consensus         1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~   80 (106)
T PF01657_consen    1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI   80 (106)
T ss_dssp             ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred             CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence            67899 4 4556 567789999999999999998654  57999988888899999999999999999999999999999


Q ss_pred             hhhCCCCceeEEEccceeEEEcCcCC
Q 046200           92 VTNCTGAKEAIVWYDQCMVRFCNSSF  117 (212)
Q Consensus        92 ~~~C~~~~~a~i~~~~C~lRYs~~~f  117 (212)
                      +..|+.++||+||+++|+||||+++|
T Consensus        81 ~~~C~~~~g~~v~~~~C~lRY~~~~F  106 (106)
T PF01657_consen   81 SSCCPGSRGGRVWYDSCFLRYENYPF  106 (106)
T ss_dssp             HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred             HHhCCCCceEEEECCCEEEEEECCCC
Confidence            99999999999999999999999998



The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 1e-20
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 5e-09

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
3a2e_A108 Ginkbilobin-2; domain 26 unknown function (DUF26), 99.97
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 99.96
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 99.73
3a2e_A108 Ginkbilobin-2; domain 26 unknown function (DUF26), 99.73
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} Back     alignment and structure
Probab=99.97  E-value=2.7e-30  Score=189.93  Aligned_cols=106  Identities=24%  Similarity=0.445  Sum_probs=96.0

Q ss_pred             cCccccccCCCCCCccCCCchHHHHHHHHHHHHHhhccCC-CCeeeeecCC-CCCeeeEEccccCCCChhhHHHHHHHHH
Q 046200           11 LDSNYVYHFCVRESDTSSGGLFMFNVGTLFSAKLYNEAGR-YLYSNATEGD-YPDKVYGLYNCRFDVSNDVCQDCIKVAI   88 (212)
Q Consensus        11 ~~~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~-~~f~~~~~g~-~~~~vYgl~qC~~Dls~~~C~~Cl~~a~   88 (212)
                      +++.++++.|++ ++|+++++|++||+.||..|+++++.+ .+|+++..|. ++++||||+|||+|+++.+|+.||+.++
T Consensus         1 A~t~~v~~~Cn~-~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~   79 (108)
T 3a2e_A            1 ANTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLV   79 (108)
T ss_dssp             CCCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcceeeeecCC-CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHH
Confidence            467899999975 799999999999999999999998654 3577776654 4689999999999999999999999999


Q ss_pred             HHHhhhCCCCceeEEEccceeEEEcCcCC
Q 046200           89 HTIVTNCTGAKEAIVWYDQCMVRFCNSSF  117 (212)
Q Consensus        89 ~~~~~~C~~~~~a~i~~~~C~lRYs~~~f  117 (212)
                      .++++.||+++||+||+++|+||||+++|
T Consensus        80 ~~~~~~C~~~~g~~i~~~~C~lRY~~~~F  108 (108)
T 3a2e_A           80 NRIFSICNNAIGARVQLVDCFIQYEQRSF  108 (108)
T ss_dssp             TTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred             HHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence            99999999999999999999999999998



>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00