Citrus Sinensis ID: 046218

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
Protein Sequence
MVSVEQQQRVAMLKYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEEKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREATSINTDATSTNPSISSSISQSPPLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTCNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPLLQSNNNVANINLGATSSAPPLQSNNNVANINFGATSSAAPPMETINCSNVMLDQQFFHDYDYTSSLFEEVWNNCLVDLPVIEFPPSNFDDVKDRP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccEEEEccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEEcEEcccccccccccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccEEEEEcccccccccccccccccccccEEcccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEEccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccHHHHHccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEccccccccccccccHccccHHHccccccccccccHHHHHHHHHHccccccEEEccccccccccccc
Coil and Loop (DISEMBL)
MVSVEQQQRVAMLKYlnsfppgyrfcptdKELVLDYLKnkamnkplppnkimdinlynhgpqdlseqeektlyfftprdrkypkgtrpnraagrgywkatgvdniigrkenpigyRKSLVyyqgypkkskktnWIMHEYridhksparsstaaphdmklddWVLCKVYLkdkksdkdnreatsintdatstnpsisssisqsppllmqttynysnvpyvhgstssatpplhqgnnnlaninhaasssvppllmqttcnysnvpyvhgstssatpplhqgnnnlaninhaasssvppllmqttynysnvpyvhgstssatpplhqgnnnlaninhaasssvpllqsnnnvaninlgatssapplqsnnnvaninfgatssaappmetincsnvmldqqffhdydytSSLFEEVWNNclvdlpviefppsnfddvkdrp
Flexible Loop (DISEMBL)
MVSVEQQQRVAMLKylnsfppgyRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEEKTLYfftprdrkypkgtrpnraagrgywkatgvdniigrkenpigyrkSLVYYQGYPKKSKKTNWIMHEYRidhksparsstaaphdmkldDWVLCKVYLkdkksdkdnreatsintdatstnpsisssisqspPLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTCNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPLLQSNNNVANINLGATSSAPPLQSNNNVANINFGATSSAAPPMETINCSNVMLDQQFFHDYDYTSSLFEEVWNNCLVDLPviefppsnfddvkdrp
Low Complexity Region (SEG)
MVSVEQQQRVAMLKYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEEKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREATSINTDATSTNpsisssisqsppLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTCNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPLLQSNNNVANINLGATSSAPPLQSNNNVANINFGATSSAAPPMETINCSNVMLDQQFFHDYDYTSSLFEEVWNNCLVDLPVIEFPPSNFDDVKDRP
Disordered region (IsUnstruct)
*********VAMLKYLNSFPPGYRFCPTDKELVLDYLKNKAMN******KIMDINLYN************TLYFFT***************AGRGYWKATGVDNIIGRKENPIGYRKSLVYYQG*********************************KLDDWVLCKVYLK***************************************TYNYSNVPYV*******************************LLMQTTCNYSNVPYV*******************************LLMQTTYNYSNVPYV*************************************************************************ETINCSNVMLDQQFFHDYDYTSSLFEEVWNNCLVDLPVIEF************
Disordered Region (DISOPRED)
********************PGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEEKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDH****************DDWVLCKVY*****************************************************************************************************************************************************************************************************NNNV**INFGA***AA*****INCSNVMLDQQFFHDYDYTSSLFEEVWNNCLVDLPVIEFPPSNF*******
Disordered Region (DISEMBL)
MVSVEQQQRVAMLKYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEEKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDH***********HDMKLDDWVLCKVYLKDK**********SINT***************SPPLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTCNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPLLQSNNNVANINLGATSSAPPLQSNNNVANINFGATSSAAPPMETINCSNVMLDQQFFHDYDYTSSLFEEVWNNCLVDLPVIEFPPSNFDDVKDRP
Disordered Region (DISPRO)
****************NSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEEKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDHK***********DMKLDDWVLCKVYLKDK**************************************************************************************YSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTYNYSNVPYVHG************************************ANINLGATSSAPPLQSNNNVANINFGATSSAAPPMETINCSNVMLDQQFFHDYDYTSSLFEEVWNNCLVDLPVIEFPPSNFDD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSVEQQQRVAMLKYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEEKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREATSINTDATSTNPSISSSISQSPPLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTCNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPLLQSNNNVANINLGATSSAPPLQSNNNVANINFGATSSAAPPMETINCSNVMLDQQFFHDYDYTSSLFEEVWNNCLVDLPVIEFPPSNFDDVKDRP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	437	2.2.26 [Sep-21-2011]
D2SMN4	406	NAC transcription factor	N/A	no	0.356	0.384	0.482	9e-43
Q8H4S4	425	NAC transcription factor	yes	no	0.368	0.378	0.469	1e-42
A2YMR0	425	NAC transcription factor	N/A	no	0.368	0.378	0.464	2e-42
A0SPJ4	405	NAC transcription factor	N/A	no	0.370	0.4	0.467	5e-42
A0SPJ8	406	NAC transcription factor	N/A	no	0.356	0.384	0.477	6e-42
A0SPJ9	402	NAC transcription factor	N/A	no	0.411	0.447	0.43	7e-42
A0SPJ6	396	NAC transcription factor	N/A	no	0.370	0.409	0.471	7e-42
A0SPJ3	405	NAC transcription factor	N/A	no	0.391	0.422	0.445	2e-41
Q93VY3	297	NAC domain-containing pro	no	no	0.386	0.569	0.464	7e-40
O49255	268	NAC transcription factor	no	no	0.347	0.567	0.496	8e-40

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  174 bits (442), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 108/174 (62%), Gaps = 18/174 (10%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD+ELV+ YLK KA   PLP   I +++LY   P +L E+    E   YFF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNII-----GRKENPIGYRKSLVYYQGYPKKSK 130
           +PRDRKYP G RPNRAA  GYWKATG D  I     G     +G +K+LV+Y+G P +  
Sbjct: 95  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 131 KTNWIMHEYRIDHKSPARSSTA----------APHDMKLDDWVLCKVYLKDKKS 174
           KTNWIMHEYR+   S   ++T+          AP  ++LDDWVLC++Y K  K+
Sbjct: 155 KTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTSKA 208

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.
Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 109/181 (60%), Gaps = 20/181 (11%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD+ELV+ YLK KA + PLP   I +++LY   P DL E+    E+  YFF
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWDLPEKANFGEQEWYFF 88

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNII---GRKENPIGYRKSLVYYQGYPKKSKKT 132
           +PRDRKYP G RPNRAA  GYWKATG D  I   G     +G +K+LV+Y+G P K  KT
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGKPPKGVKT 148

Query: 133 NWIMHEYRIDHKSPARSSTAAPH--------------DMKLDDWVLCKVYLKDKKSDKDN 178
           NWIMHEYR+   S + ++ A                  ++LDDWVLC++Y K  K+    
Sbjct: 149 NWIMHEYRLTDTSSSAAAVATTRRPPPPITGGSKGAVSLRLDDWVLCRIYKKTNKAGAGQ 208

Query: 179 R 179
           R
Sbjct: 209 R 209

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 109/181 (60%), Gaps = 20/181 (11%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD+ELV+ YLK KA + PLP   I +++LY   P +L E+    E+  YFF
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWELPEKANFGEQEWYFF 88

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNII---GRKENPIGYRKSLVYYQGYPKKSKKT 132
           +PRDRKYP G RPNRAA  GYWKATG D  I   G     +G +K+LV+Y+G P K  KT
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGKPPKGVKT 148

Query: 133 NWIMHEYRIDHKSPARSSTAAPHD--------------MKLDDWVLCKVYLKDKKSDKDN 178
           NWIMHEYR+   S + ++ A                  ++LDDWVLC++Y K  K+    
Sbjct: 149 NWIMHEYRLTDTSSSAAAVATTRQPPPPITGGSRGAVSLRLDDWVLCRIYKKTNKAGAGQ 208

Query: 179 R 179
           R
Sbjct: 209 R 209

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score =  172 bits (436), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 110/182 (60%), Gaps = 20/182 (10%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD+ELV+ YLK KA   PLP N I +++LY   P +L E+    E+  YFF
Sbjct: 34  LPPGFRFHPTDEELVVHYLKKKADKAPLPVNIIAEVDLYKFDPWELPEKATIGEQEWYFF 93

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNII-------GRKENPIGYRKSLVYYQGYPKK 128
           +PRDRKYP G RPNRAA  GYWKATG D  I       G     +G +K+LV+Y+G P K
Sbjct: 94  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPPK 153

Query: 129 SKKTNWIMHEYRIDHKS----------PARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDN 178
             KTNWIMHEYR+   S          P    + A   ++LDDWVLC++Y K  K+   +
Sbjct: 154 GLKTNWIMHEYRLTDASGSTTATNRPPPVTGGSRAAASLRLDDWVLCRIYKKINKAAAGD 213

Query: 179 RE 180
           ++
Sbjct: 214 QQ 215

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  172 bits (435), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 107/174 (61%), Gaps = 18/174 (10%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD+ELV+ YLK KA   PLP   I +++LY   P +L E+    E   YFF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNII-----GRKENPIGYRKSLVYYQGYPKKSK 130
           +PRDRKY  G RPNRAA  GYWKATG D  I     G     +G +K+LV+Y+G P +  
Sbjct: 95  SPRDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 131 KTNWIMHEYRIDHKSPARSSTA----------APHDMKLDDWVLCKVYLKDKKS 174
           KTNWIMHEYR+   S   ++T+          AP  ++LDDWVLC++Y K  K+
Sbjct: 155 KTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTSKA 208

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  171 bits (434), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 117/200 (58%), Gaps = 20/200 (10%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD+ELV+ YLK KA   PLP   I +++LY   P +L E+    E+  YFF
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYFF 87

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNII---GRKENPIGYRKSLVYYQGYPKKSKKT 132
           +PRDRKYP G RPNRAA  GYWKATG D  I   G     +G + +LV+Y+G P K  KT
Sbjct: 88  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKXALVFYRGKPPKGLKT 147

Query: 133 NWIMHEYRIDHKSPARSSTAAP--------HDMKLDDWVLCKVYLKDKKSDKDNREATSI 184
           NWIMHEYR+   S + +++  P          ++LDDWVLC++Y       K N+ A + 
Sbjct: 148 NWIMHEYRLTDASSSAATSRPPPVTGGSRAASLRLDDWVLCRIY------KKINKAAAAD 201

Query: 185 NTDATSTNPSISSSISQSPP 204
              +     S+  +++  PP
Sbjct: 202 QQRSMECEDSVEDAVTAYPP 221

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  171 bits (434), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 111/176 (63%), Gaps = 14/176 (7%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD+ELV+ YLK KA   PLP   I +++LY   P +L E+    E+  YFF
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYFF 87

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNII---GRKENPIGYRKSLVYYQGYPKKSKKT 132
           +PRDRKYP G RPNRAA  GYWKATG D  I   G     +G +K+LV+Y+G P K  KT
Sbjct: 88  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYRGKPPKGLKT 147

Query: 133 NWIMHEYRIDHKSPARSSTAAP--------HDMKLDDWVLCKVYLKDKKSDKDNRE 180
           NWIMHEYR+   S + +++  P          ++LDDWVLC++Y K  K+   +++
Sbjct: 148 NWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIYKKINKAAAGDQQ 203

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 113/191 (59%), Gaps = 20/191 (10%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD+ELV+ YLK KA   PLP   I +++LY   P +L E+    E+  YFF
Sbjct: 33  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYFF 92

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNII-------GRKENPIGYRKSLVYYQGYPKK 128
           +PRDRKYP G RPNRAA  GYWKATG D  I       G     +G +K+LV+Y+G P K
Sbjct: 93  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPPK 152

Query: 129 SKKTNWIMHEYRIDHKS----------PARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDN 178
             KTNWIMHEYR+   S          P    + A   ++LDDWVLC++Y K  K+   +
Sbjct: 153 GLKTNWIMHEYRLTDVSGSTTTSRPPPPVTGGSRAAASLRLDDWVLCRIYKKINKAAAGD 212

Query: 179 REATSINTDAT 189
           ++ ++   D+ 
Sbjct: 213 QQRSTECEDSV 223

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).

Triticum durum (taxid: 4567)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  165 bits (417), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 110/185 (59%), Gaps = 16/185 (8%)

Query: 2   VSVEQQQRVAMLKYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGP 61
           + V ++  +A L    S PPG+RF PTD+EL++ YL  K          I DI+LY   P
Sbjct: 1   MGVREKDPLAQL----SLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDP 56

Query: 62  QDLSEQE---EKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKS 118
            DL  +    EK  YFF+PRDRKYP G+RPNR AG GYWKATG D II      +G +K+
Sbjct: 57  WDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKA 116

Query: 119 LVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDN 178
           LV+Y G   K  KTNWIMHEYR+   S +  S+      KLDDWVLC++Y   KK+    
Sbjct: 117 LVFYAGKAPKGTKTNWIMHEYRLIEHSRSHGSS------KLDDWVLCRIY---KKTSGSQ 167

Query: 179 REATS 183
           R+A +
Sbjct: 168 RQAVT 172

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score =  165 bits (417), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 109/157 (69%), Gaps = 5/157 (3%)

Query: 17  NSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEE---KTLY 73
           ++ PPG+RF PTD+EL++ YL+N+ M+KP P + I ++++Y   P  L E+ E      Y
Sbjct: 7   STLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWY 66

Query: 74  FFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTN 133
           FF+PR+RKYP G RPNRAA  GYWKATG D  I    + +G +K+LV+Y+G P K  KT+
Sbjct: 67  FFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPKGIKTD 126

Query: 134 WIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLK 170
           WIMHEYR+ H S  ++ST     M+LD+WVLC++Y K
Sbjct: 127 WIMHEYRL-HDS-RKASTKRNGSMRLDEWVLCRIYKK 161

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
224106187	386	NAC domain protein, IPR003441 [Populus t	0.524	0.593	0.448	1e-47
224106189	513	NAC domain protein, IPR003441 [Populus t	0.384	0.327	0.525	3e-46
225435399	406	PREDICTED: uncharacterized protein LOC10	0.395	0.426	0.478	3e-44
255544902	522	conserved hypothetical protein [Ricinus	0.386	0.323	0.482	2e-43
224054978	441	NAC domain protein, IPR003441 [Populus t	0.363	0.360	0.533	2e-42
357122375	435	PREDICTED: uncharacterized protein LOC10	0.395	0.397	0.453	8e-42
117586720	339	NAC domain protein [Cymbidium hybrid cul	0.343	0.442	0.512	2e-41
297746301	364	unnamed protein product [Vitis vinifera]	0.398	0.478	0.463	2e-41
297839605	250	ANAC032 [Arabidopsis lyrata subsp. lyrat	0.425	0.744	0.466	3e-41
186509742	343	NAC domain containing protein 47 [Arabid	0.347	0.443	0.527	3e-41

>gi|224106187|ref|XP_002314077.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222850485|gb|EEE88032.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 146/245 (59%), Gaps = 16/245 (6%)

Query: 15  YLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQ----EEK 70
           Y N+FP GYRFCP + ELVL YLKNK    PLP N+I D++LY H P++L+EQ     E+
Sbjct: 79  YFNNFPAGYRFCPHNHELVLHYLKNKVSGLPLPRNRIADVSLYQHNPEELAEQFKHYGER 138

Query: 71  TLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSK 130
             YFFTPRD+KY  GTRPNRAAG GYWKATG D  I   +  +GYRKSLVYY G   K  
Sbjct: 139 EWYFFTPRDKKYRNGTRPNRAAGGGYWKATGADKKIVHDKAIVGYRKSLVYYNGKAPKGD 198

Query: 131 KTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREATSINTDATS 190
           KTNW+MHE+R++  +P   +    +DM+LD+WVLC++Y K +K  K  RE  S       
Sbjct: 199 KTNWMMHEFRMEAAAPPIRNNI--NDMRLDEWVLCRIYKKIQKPVK-YREQFSSQKHQLL 255

Query: 191 TNPSISSSISQSPPLLMQTTYNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPP 250
             P+  ++        M    N  N  + +     ATPPL  G ++L    ++ S++  P
Sbjct: 256 IGPNDLAA--------MDGDRNSGNDSWENPWQQQATPPL-AGFDDLFFFCNSYSAAQVP 306

Query: 251 LLMQT 255
            L +T
Sbjct: 307 FLPET 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106189|ref|XP_002314078.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222850486|gb|EEE88033.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/179 (52%), Positives = 119/179 (66%), Gaps = 11/179 (6%)

Query: 15  YLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQ----EEK 70
           Y NSFPPGYRFCP D ELV+ YL NK    PLP NKI+D+ LY + P+ L+++     EK
Sbjct: 104 YFNSFPPGYRFCPHDHELVIHYLTNKVKGLPLPRNKIVDVILYQYDPEYLADRYQKFGEK 163

Query: 71  TLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSK 130
             YFFTPRDRKY  G+RPNRAA  GYWKATG D  I   E  +GYRK+LVYY G   K  
Sbjct: 164 EWYFFTPRDRKYKNGSRPNRAANGGYWKATGADKNITHDEAVVGYRKALVYYTGKAPKGD 223

Query: 131 KTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKK-----SDKDNREATSI 184
           KTNWIMHE+R++   P   +     DM+LD+WVLC++Y K +K     +++ N E T++
Sbjct: 224 KTNWIMHEFRVNEPIPQVRNHR--DDMRLDEWVLCRIYKKQEKRNNVRNEQRNEERTNV 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435399|ref|XP_002282639.1| PREDICTED: uncharacterized protein LOC100250078 [Vitis vinifera]

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/182 (47%), Positives = 126/182 (69%), Gaps = 9/182 (4%)

Query: 16  LNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEE----KT 71
           LNS PPGYRF PTD E ++ YL+ K  ++PLPPNKI+++NLY + P++L+ + E      
Sbjct: 36  LNSLPPGYRFNPTDAETIVYYLRKKVDHQPLPPNKIIEVNLYAYDPEELAARYEPCGNDE 95

Query: 72  LYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKK 131
            ++FTPRDRKYP G RPNR+   G+WKATG D  I  ++  +GYRKSLV+Y+G P+   K
Sbjct: 96  WFYFTPRDRKYPNGQRPNRSITNGHWKATGADKEIKFEDCKVGYRKSLVFYRGGPRDGVK 155

Query: 132 TNWIMHEYRIDH--KSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREATSINTDAT 189
           TNW+MHE+R+    K P+RS     +DM+LDD VLCK+Y K+++  K +R  + ++   +
Sbjct: 156 TNWMMHEFRVAEPPKPPSRSGV---NDMRLDDCVLCKIYKKEERISKRSRHESGLDESGS 212

Query: 190 ST 191
           S+
Sbjct: 213 SS 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544902|ref|XP_002513512.1| conserved hypothetical protein [Ricinus communis] gi|223547420|gb|EEF48915.1| conserved hypothetical protein [Ricinus communis]

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 116/176 (65%), Gaps = 7/176 (3%)

Query: 13  LKYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQ----E 68
           L++ +SFP GYRFCP+D+EL++ YL+ K  ++ LPPNKI+ ++LYN  P+ L+E+     
Sbjct: 101 LEFFDSFPAGYRFCPSDEELIIHYLRRKVHDQILPPNKIISLDLYNFNPEFLAEKYANYG 160

Query: 69  EKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKK 128
           E   YFFTPR +KY  G RP R+A  GYWKATG D  I  ++  +G+RK+LV+Y G P  
Sbjct: 161 ENEWYFFTPRAKKYKNGNRPRRSADGGYWKATGADKEIKCRDIVVGFRKALVFYTGKPPS 220

Query: 129 SKKTNWIMHEYRIDHKSPARSST---AAPHDMKLDDWVLCKVYLKDKKSDKDNREA 181
             KTNWIMHEYR+D   P R          +M LDDWVLC++Y K +K +   R+A
Sbjct: 221 GVKTNWIMHEYRVDKPPPLRKRKRDDGTDDNMTLDDWVLCRIYKKSEKPNVRIRKA 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054978|ref|XP_002298396.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845654|gb|EEE83201.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 114/178 (64%), Gaps = 19/178 (10%)

Query: 14  KYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQ----EE 69
           +Y NSFPPGYRF P D ELVL YL  K    PLP N+I++ +LY   P+DL+ Q     E
Sbjct: 44  RYFNSFPPGYRFRPHDHELVLHYLDKKVKGLPLPMNRIINADLYQFDPEDLAAQYSHHGE 103

Query: 70  KTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNII---------GRK----ENPIGYR 116
           K  YFFTPR+RKY  GTRPNRAAG GYWKATG D  I         G+K    +  +G+R
Sbjct: 104 KEWYFFTPRNRKYKNGTRPNRAAGGGYWKATGADKGITYEKRVIEAGKKITYQKTLVGHR 163

Query: 117 KSLVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKS 174
           K+LVYY G P K  KTNWIMHE+R+D  SP         DM+LDD VLC++Y K +KS
Sbjct: 164 KALVYYAGKPPKGDKTNWIMHEFRLD-DSPLHVRNNR-DDMRLDDCVLCRIYKKREKS 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122375|ref|XP_003562891.1| PREDICTED: uncharacterized protein LOC100834687 [Brachypodium distachyon]

 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 117/194 (60%), Gaps = 21/194 (10%)

Query: 5   EQQQRVAMLKYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDL 64
           +QQQR      L   PPG+RF PTD+ELV+ YLK KA   PLP   I +++LY   P +L
Sbjct: 19  QQQQRAGSAPEL---PPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWEL 75

Query: 65  SEQE---EKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNII---GRKENPIGYRKS 118
            E+    E+  YFF+PRDRKYP G RPNRAA  GYWKATG D  I   G     +G +K+
Sbjct: 76  PEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGCAREKVGVKKA 135

Query: 119 LVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAP------------HDMKLDDWVLCK 166
           LV+Y+G P K  KTNWIMHEYR+   S + ++ + P              ++LDDWVLC+
Sbjct: 136 LVFYRGKPPKGLKTNWIMHEYRLADSSSSGATASRPPPVVAGGSGGRAASLRLDDWVLCR 195

Query: 167 VYLKDKKSDKDNRE 180
           +Y K  K+   +++
Sbjct: 196 IYKKINKAAAGDQQ 209

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|117586720|dbj|BAF36563.1| NAC domain protein [Cymbidium hybrid cultivar]

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 109/160 (68%), Gaps = 10/160 (6%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD+EL+L YL+N+A + P P + I ++++Y   P DL E+    ++  YFF
Sbjct: 8   LPPGFRFHPTDEELILHYLRNRAASSPCPASIIAEVDIYKFDPWDLPEKAAFGDREWYFF 67

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWI 135
           TPRDRKYP G RPNRAAG GYWKATG D  I      IG +K+LV+Y+G P K  KTNWI
Sbjct: 68  TPRDRKYPNGNRPNRAAGSGYWKATGTDKPISSGSENIGVKKALVFYKGRPPKGLKTNWI 127

Query: 136 MHEYRIDHKSPARSSTAAP-----HDMKLDDWVLCKVYLK 170
           MHE+R+   +  +S++  P     H M+LDDWVLC++Y K
Sbjct: 128 MHEFRLADAN--KSNSYKPIRLRDHSMRLDDWVLCRIYRK 165

Source: Cymbidium hybrid cultivar

Species: Cymbidium hybrid cultivar

Genus: Cymbidium

Family: Orchidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746301|emb|CBI16357.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 120/179 (67%), Gaps = 5/179 (2%)

Query: 16  LNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEEKT---- 71
           LNS PPGYRF PTD E+++ YL+ K  ++ LPPNKI+++NLY + P +L+ + E +    
Sbjct: 35  LNSLPPGYRFNPTDAEIIVFYLRKKIDHQSLPPNKIIEVNLYGYDPDELAARYEPSGNDE 94

Query: 72  LYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKK 131
            ++FTPR+RKY  G RPNR+ G GYWKATG D  I  ++  +GYRK+LV+Y+G  +   K
Sbjct: 95  WFYFTPRERKYRNGQRPNRSIGEGYWKATGADKEIKFEDRTVGYRKALVFYRGSAQNGVK 154

Query: 132 TNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREATSINTDATS 190
           TNWIMHE+ +  K P     +  +DM+LDD VLC+VY  D++  K +R A+ ++    S
Sbjct: 155 TNWIMHEFTV-AKPPGPPRRSGVNDMRLDDCVLCRVYRTDERIYKRSRHASRLDESGPS 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839605|ref|XP_002887684.1| ANAC032 [Arabidopsis lyrata subsp. lyrata] gi|297333525|gb|EFH63943.1| ANAC032 [Arabidopsis lyrata subsp. lyrata]

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 121/193 (62%), Gaps = 7/193 (3%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
           FPPG+RF PTD+ELVL YL  K  ++P+P   I +++LY + P DL +     EK  YFF
Sbjct: 10  FPPGFRFHPTDEELVLMYLCRKCASQPIPAPIITELDLYRYDPWDLPDMALYGEKEWYFF 69

Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWI 135
           +PRDRKYP G+RPNRAAG GYWKATG D  IGR + P+G +K+LV+Y G P   +KTNWI
Sbjct: 70  SPRDRKYPNGSRPNRAAGTGYWKATGADKPIGRPK-PVGIKKALVFYSGKPPNGEKTNWI 128

Query: 136 MHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREATSINTDATSTNPSI 195
           MHEYR+   +    S    + ++LDDWVLC++Y K    +K   E      + T    S+
Sbjct: 129 MHEYRL---ADVDRSVRKKNSLRLDDWVLCRIYNKKGVIEKQRSENELRAVNDTCPPESV 185

Query: 196 SSSISQSPPLLMQ 208
              I+ S  ++ Q
Sbjct: 186 ERLIAGSEQVVSQ 198

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186509742|ref|NP_001118568.1| NAC domain containing protein 47 [Arabidopsis thaliana] gi|6223651|gb|AAF05865.1|AC011698_16 NAM-like protein (no apical meristem) [Arabidopsis thaliana] gi|332640513|gb|AEE74034.1| NAC domain containing protein 47 [Arabidopsis thaliana]

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 110/163 (67%), Gaps = 11/163 (6%)

Query: 18  SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYF 74
           S PPG+RF PTD+EL+L YL+ K  + P+P + I D+++Y   P DL  +    EK  YF
Sbjct: 9   SLPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGEKEWYF 68

Query: 75  FTPRDRKYPKGTRPNRAAGRGYWKATGVDNII------GRKENPIGYRKSLVYYQGYPKK 128
           F+PRDRKYP G RPNRAA  GYWKATG D +I      G  EN IG +K+LV+Y+G P K
Sbjct: 69  FSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHEN-IGIKKALVFYRGKPPK 127

Query: 129 SKKTNWIMHEYRI-DHKSPARSSTAAPHDMKLDDWVLCKVYLK 170
             KTNWIMHEYR+ D  SP R +++     +LDDWVLC++Y K
Sbjct: 128 GVKTNWIMHEYRLADSLSPKRINSSRSGGSELDDWVLCRIYKK 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.338	0.584	0.535	6.6e-42
TAIR|locus:2095908	359	NAC047 "NAC domain containing	0.308	0.376	0.527	2e-41
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.617	0.851	0.361	3.3e-40
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.347	0.567	0.496	1.4e-39
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.729	0.876	0.315	4.3e-38
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.446	0.603	0.417	5.5e-38
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.386	0.533	0.467	7e-38
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.363	0.550	0.485	8.9e-38
TAIR|locus:2160634	312	NAC102 "NAC domain containing	0.425	0.596	0.450	8.9e-38
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.359	0.490	0.469	1.1e-37

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 83/155 (53%), Positives = 108/155 (69%)

Query:    19 FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
             FPPG+RF PTD+ELVL YL  K  ++P+P   I +++LY + P DL +     EK  YFF
Sbjct:    10 FPPGFRFHPTDEELVLMYLCRKCASQPIPAPIITELDLYRYDPWDLPDMALYGEKEWYFF 69

Query:    76 TPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWI 135
             +PRDRKYP G+RPNRAAG GYWKATG D  IGR + P+G +K+LV+Y G P   +KTNWI
Sbjct:    70 SPRDRKYPNGSRPNRAAGTGYWKATGADKPIGRPK-PVGIKKALVFYSGKPPNGEKTNWI 128

Query:   136 MHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLK 170
             MHEYR+   +    S    + ++LDDWVLC++Y K
Sbjct:   129 MHEYRL---ADVDRSVRKKNSLRLDDWVLCRIYNK 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2095908 NAC047 "NAC domain containing protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 77/146 (52%), Positives = 99/146 (67%)

Query:    17 NSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLY 73
             +S PPG+RF PTD+EL+L YL+ K  + P+P + I D+++Y   P DL  +    EK  Y
Sbjct:     8 SSLPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGEKEWY 67

Query:    74 FFTPRDRKYPKGTRPNRAAGRGYWKATGVDNII------GRKENPIGYRKSLVYYQGYPK 127
             FF+PRDRKYP G RPNRAA  GYWKATG D +I      G  EN IG +K+LV+Y+G P 
Sbjct:    68 FFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHEN-IGIKKALVFYRGKPP 126

Query:   128 KSKKTNWIMHEYRI-DHKSPARSSTA 152
             K  KTNWIMHEYR+ D  SP R +++
Sbjct:   127 KGVKTNWIMHEYRLADSLSPKRINSS 152

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 108/299 (36%), Positives = 149/299 (49%)

Query:    18 SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYF 74
             S PPG+RF PTD+EL+++YL  KA         I +I+LY   P  L  +    EK  YF
Sbjct:    13 SLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWYF 72

Query:    75 FTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNW 134
             F+PRDRKYP G+RPNR AG GYWKATG D +I  +   +G +K+LV+Y G   K  KTNW
Sbjct:    73 FSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRRVGIKKALVFYIGKAPKGTKTNW 132

Query:   135 IMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREATSINTDATSTNXX 194
             IMHEYR+   S    ST      KLDDWVLC++Y K   + K        +    S N  
Sbjct:   133 IMHEYRLIEPSRRNGST------KLDDWVLCRIYKKQTSAQKQAYNNLMTSGREYSNNGS 186

Query:   195 XXXXXXXXXXLLMQTTYNYSN--VPYVHGSTSSATPPLHQ--------GNNNLAN----- 239
                        ++++ +   N  + +  GS S+A P  H+        G   LA      
Sbjct:   187 STSSSSHQYDDVLESLHEIDNRSLGFAAGS-SNALPHSHRPVLTNHKTGFQGLAREPSFD 245

Query:   240 -INHAASSSVPPLLMQTTCNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPL 297
               N    +SVP L +    N  ++ Y  G T   T  + + NNN ++++     SV P+
Sbjct:   246 WANLIGQNSVPELGLSH--NVPSIRYGDGGTQQQTEGIPRFNNN-SDVSANQGFSVDPV 301

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 78/157 (49%), Positives = 109/157 (69%)

Query:    17 NSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQEE---KTLY 73
             ++ PPG+RF PTD+EL++ YL+N+ M+KP P + I ++++Y   P  L E+ E      Y
Sbjct:     7 STLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWY 66

Query:    74 FFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTN 133
             FF+PR+RKYP G RPNRAA  GYWKATG D  I    + +G +K+LV+Y+G P K  KT+
Sbjct:    67 FFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPKGIKTD 126

Query:   134 WIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLK 170
             WIMHEYR+ H S  ++ST     M+LD+WVLC++Y K
Sbjct:   127 WIMHEYRL-HDS-RKASTKRNGSMRLDEWVLCRIYKK 161

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 114/361 (31%), Positives = 169/361 (46%)

Query:    18 SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYF 74
             + PPG+RF PTD+ELV+ YLK KA + PLP   I +++LY   P +L  +    E+  YF
Sbjct:    16 NLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYF 75

Query:    75 FTPRDRKYPKGTRPNRAAGRGYWKATGVDN-IIGRKENP-IGYRKSLVYYQGYPKKSKKT 132
             F+PRDRKYP G RPNRAA  GYWKATG D  ++    N  +G +K+LV+Y G P K  K+
Sbjct:    76 FSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDGNQKVGVKKALVFYSGKPPKGVKS 135

Query:   133 NWIMHEYRI-----DHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREATSINTD 187
             +WIMHEYR+     +++ P        + ++LDDWVLC++Y K+  S   + +      D
Sbjct:   136 DWIMHEYRLIENKPNNRPPGCDFGNKKNSLRLDDWVLCRIYKKNNASRHVDNDKDHDMID 195

Query:   188 ATSTNXXXXXXXXXXXXLLMQTTYNYS-NVPYVHGSTSSATPPLHQGNNNLANINHAASS 246
                               L Q  +N S ++ +  G  S     +     N +  +     
Sbjct:   196 YIFRKIPPSLSMAAASTGLHQHHHNVSRSMNFFPGKFSGGGYGIFSDGGNTSIYDGGGM- 254

Query:   247 SVPPLLMQTTCNYSNVPYVHGSTSSATPPLHQGNNNLANINHAASSSVPPLLMQTTYNYS 306
                          +N+      T S     H  N ++  +NHA+SS   P++M       
Sbjct:   255 ------------INNI-----GTDSVD---HDNNADVVGLNHASSSG--PMMMANLKRTL 292

Query:   307 NVPY--VHGSTSSATPP--LHQ---GNNNLANINHAASSSVP-LLQSNNNVANINLGATS 358
              VPY  V      A+P    H    G  + +N++ +     P L+Q    V    L  T+
Sbjct:   293 PVPYWPVADEEQDASPSKRFHGVGGGGGDCSNMSSSMMEETPPLMQQQGGVLGDGLFRTT 352

Query:   359 S 359
             S
Sbjct:   353 S 353

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 86/206 (41%), Positives = 115/206 (55%)

Query:    20 PPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFFT 76
             PPG+RF PTD+ELV+ YLK KA + PLP + I +I+LY   P +L  +    E   YFF+
Sbjct:    17 PPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYFFS 76

Query:    77 PRDRKYPKGTRPNRAAGRGYWKATGVDN-IIGRKENPIGYRKSLVYYQGYPKKSKKTNWI 135
             PRDRKYP G RPNRAA  GYWKATG D  I     + +G +K+LV+Y G P K  KT+WI
Sbjct:    77 PRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFYGGKPPKGIKTDWI 136

Query:   136 MHEYRIDHKS------PARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREATSINTDAT 189
             MHEYR+   +      P   +T   + ++LDDWVLC++Y K+  S +   E   +  D  
Sbjct:   137 MHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNS-SQRPTMERVLLREDLM 195

Query:   190 STNXXXXXXXXXXXXLLMQTTYNYSN 215
                            +L     N +N
Sbjct:   196 EGMLSKSSANSSSTSVLDNNDNNNNN 221

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 87/186 (46%), Positives = 111/186 (59%)

Query:    18 SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYF 74
             S PPG+RF PTD+EL++ YL  KA         I +I+LY   P  L  +    EK  YF
Sbjct:    13 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 72

Query:    75 FTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNW 134
             F+PRDRKYP G+RPNR AG GYWKATG D II  +   +G +K+LV+Y G   K  KTNW
Sbjct:    73 FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 132

Query:   135 IMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDK---DN-----REATSINT 186
             IMHEYR+   S    ST      KLDDWVLC++Y K   + K   DN     RE ++  T
Sbjct:   133 IMHEYRLIEPSRRNGST------KLDDWVLCRIYKKQSSAQKQVYDNGIANAREFSNNGT 186

Query:   187 DATSTN 192
              +T+++
Sbjct:   187 SSTTSS 192

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 81/167 (48%), Positives = 109/167 (65%)

Query:    16 LNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDL---SEQEEKTL 72
             L   PPG+RF PTD+ELV+ YL  K  ++ +    I +I+LY + P +L   +   EK  
Sbjct:     4 LLQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGEKEW 63

Query:    73 YFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKT 132
             YFF+PRDRKYP G+RPNR+AG GYWKATG D  IG  + P+G +K+LV+Y G   K +KT
Sbjct:    64 YFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGLPK-PVGIKKALVFYAGKAPKGEKT 122

Query:   133 NWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNR 179
             NWIMHEYR+      RS     + ++LDDWVLC++Y  +KK   + R
Sbjct:   123 NWIMHEYRLADVD--RSVRKKKNSLRLDDWVLCRIY--NKKGATERR 165

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2160634 NAC102 "NAC domain containing protein 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 86/191 (45%), Positives = 117/191 (61%)

Query:     5 EQQQRVAMLKYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDL 64
             +QQ     +K   + P G+RF PTD+ELV  YL  +  ++P+    I +I+LY   P +L
Sbjct:    36 KQQGTFPKMKAELNLPAGFRFHPTDEELVKFYLCRRCASEPINVPVIAEIDLYKFNPWEL 95

Query:    65 SEQE---EKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVY 121
              E     EK  YFF+ RDRKYP G+RPNRAAG GYWKATG D  IG K   +G +K+LV+
Sbjct:    96 PEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIG-KPKTLGIKKALVF 154

Query:   122 YQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDKDNREA 181
             Y G   K  KTNWIMHEYR+ +   + +ST   ++++LDDWVLC++Y K    +K    A
Sbjct:   155 YAGKAPKGIKTNWIMHEYRLANVDRS-ASTNKKNNLRLDDWVLCRIYNKKGTMEKYLPAA 213

Query:   182 TSINTDATSTN 192
                 T+  ST+
Sbjct:   214 AEKPTEKMSTS 224

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 78/166 (46%), Positives = 104/166 (62%)

Query:    18 SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYF 74
             + PPG+RF PTD+ELV+ YLK KA + PLP   I D++LY   P +L  +    E+  YF
Sbjct:    16 NLPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKASFGEQEWYF 75

Query:    75 FTPRDRKYPKGTRPNRAAGRGYWKATGVDNII----GRKENPIGYRKSLVYYQGYPKKSK 130
             F+PRDRKYP G RPNRAA  GYWKATG D  +    G     +G +K+LV+Y G P K  
Sbjct:    76 FSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKGV 135

Query:   131 KTNWIMHEYRIDHKSPARSSTAA--PHDMKLDDWVLCKVYLKDKKS 174
             K++WIMHEYR+    P          + ++LDDWVLC++Y K+  +
Sbjct:   136 KSDWIMHEYRLTDNKPTHICDFGNKKNSLRLDDWVLCRIYKKNNST 181

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	437
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	1e-58

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  187 bits (478), Expect = 1e-58
 Identities = 63/130 (48%), Positives = 91/130 (70%), Gaps = 6/130 (4%)

Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLP-PNKIMDINLYNHGPQDL----SEQEEKTLY 73
            PPG+RF PTD+ELV+ YLK K + KPLP  + I ++++Y   P DL    ++  ++  Y
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 74  FFTPRDRKYPKGTRPNRAAGRGYWKATGVD-NIIGRKENPIGYRKSLVYYQGYPKKSKKT 132
           FF+PRDRKYP G+R NRA G GYWKATG D  ++ +    +G +K+LV+Y+G   K +KT
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEKT 120

Query: 133 NWIMHEYRID 142
           +W+MHEYR++
Sbjct: 121 DWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	437
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=6.6e-43  Score=303.37  Aligned_cols=124  Identities=46%  Similarity=0.998  Sum_probs=96.2

Q ss_pred             CCCCceeCCCHHHHHHHHHHhhhcCCCCCC-CceeecCCCCCCCCCcccc---cCceEEeecCccccCCCCCCCcccccc
Q 046218           19 FPPGYRFCPTDKELVLDYLKNKAMNKPLPP-NKIMDINLYNHGPQDLSEQ---EEKTLYFFTPRDRKYPKGTRPNRAAGR   94 (437)
Q Consensus        19 LPPGFRF~PTDEELV~~YLrrKi~G~Plp~-~iI~EvDVY~~dPWELp~~---ge~EWYFFSpR~rKy~nG~R~nRatGg   94 (437)
                      |||||||+|||||||.+||++|+.|.+++. .+|+++|||++|||+|+..   ++++||||+++++++.+|.|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999999888 7999999999999999943   677999999999999999999999999


Q ss_pred             ceeEecCCCeeecC-CCCceeEEEEEEEeeCCCCCCCCcCeEEEEEEeC
Q 046218           95 GYWKATGVDNIIGR-KENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRID  142 (437)
Q Consensus        95 GyWKatG~dK~I~s-~g~vVG~KKtLvFY~GkaprG~KTgWVMhEYrL~  142 (437)
                      |+||.+|++++|.+ .+++||+||+|+||.++.+++.||+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999999999998 6899999999999999888999999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	437
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		5e-39
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		7e-39
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		7e-37

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  158 bits (400), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 9/162 (5%)
Query: 18  SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYF 74
           S PPG+RF PTD+EL++ YL  KA         I +I+LY   P  L  +    EK  YF
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 75
Query: 75  FTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNW 134
           F+PRDRKYP G+RPNR AG GYWKATG D II  +   +G +K+LV+Y G   K  KTNW
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 135
Query: 135 IMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDK 176
           IMHEYR+   S    ST      KLDDWVLC++Y K   + K
Sbjct: 136 IMHEYRLIEPSRRNGST------KLDDWVLCRIYKKQSSAQK 171

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  158 bits (399), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 99/162 (61%), Gaps = 9/162 (5%)
Query: 18  SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYF 74
           S PPG+RF PTD+EL++ YL  KA         I +I+LY   P  L  +    EK  YF
Sbjct: 19  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 78
Query: 75  FTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNW 134
           F+PRDRKYP G+RPNR AG GYWKATG D II  +   +G +K+LV+Y G   K  KTNW
Sbjct: 79  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 138
Query: 135 IMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDK 176
           IMHEYR+   S    ST      KLDDWVLC++Y K   + K
Sbjct: 139 IMHEYRLIEPSRRNGST------KLDDWVLCRIYKKQSSAQK 174

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 102/161 (63%), Gaps = 4/161 (2%)
Query: 19  FPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQE---EKTLYFF 75
            PPG+RF PTD ELV  YL  KA  + LP   I +++LY   P DL E+     +  YFF
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFF 74
Query: 76  TPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWI 135
           TPRDRKYP G+RPNRAAG GYWKATG D  +  +   +G +K+LV+Y G   +  KT+WI
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWI 134
Query: 136 MHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDK 176
           MHEYR+       ++ A    ++LDDWVLC++Y K  + +K
Sbjct: 135 MHEYRLADAG-RAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	437
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	3e-74
1ut7_A	171	No apical meristem protein; transcription regulati	2e-73

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  229 bits (585), Expect = 3e-74
 Identities = 76/162 (46%), Positives = 103/162 (63%), Gaps = 4/162 (2%)

Query: 18  SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDL---SEQEEKTLYF 74
           + PPG+RF PTD ELV  YL  KA  + LP   I +++LY   P DL   +    +  YF
Sbjct: 14  NLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYF 73

Query: 75  FTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNW 134
           FTPRDRKYP G+RPNRAAG GYWKATG D  +  +   +G +K+LV+Y G   +  KT+W
Sbjct: 74  FTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDW 133

Query: 135 IMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDK 176
           IMHEYR+   +   ++ A    ++LDDWVLC++Y K  + +K
Sbjct: 134 IMHEYRLAD-AGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  227 bits (580), Expect = 2e-73
 Identities = 80/162 (49%), Positives = 98/162 (60%), Gaps = 9/162 (5%)

Query: 18  SFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDL---SEQEEKTLYF 74
           S PPG+RF PTD+EL++ YL  KA         I +I+LY   P  L   +   EK  YF
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 75

Query: 75  FTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNW 134
           F+PRDRKYP G+RPNR AG GYWKATG D II  +   +G +K+LV+Y G   K  KTNW
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 135

Query: 135 IMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDKKSDK 176
           IMHEYR+   S    S       KLDDWVLC++Y K   + K
Sbjct: 136 IMHEYRLIEPSRRNGS------TKLDDWVLCRIYKKQSSAQK 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	437
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.4e-56  Score=412.14  Aligned_cols=160  Identities=48%  Similarity=0.925  Sum_probs=134.7

Q ss_pred             hcccCCCCceeCCCHHHHHHHHHHhhhcCCCCCCCceeecCCCCCCCCCcccc---cCceEEeecCccccCCCCCCCccc
Q 046218           15 YLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQ---EEKTLYFFTPRDRKYPKGTRPNRA   91 (437)
Q Consensus        15 ~~~~LPPGFRF~PTDEELV~~YLrrKi~G~Plp~~iI~EvDVY~~dPWELp~~---ge~EWYFFSpR~rKy~nG~R~nRa   91 (437)
                      ....|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+||+.   ++++||||++|++||++|.|++|+
T Consensus        11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~   90 (174)
T 3ulx_A           11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRA   90 (174)
T ss_dssp             STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEE
T ss_pred             cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceee
Confidence            34689999999999999999999999999999999999999999999999988   788999999999999999999999


Q ss_pred             cccceeEecCCCeeecCCCCceeEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCCCCCcEEEEEEEEeC
Q 046218           92 AGRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKD  171 (437)
Q Consensus        92 tGgGyWKatG~dK~I~s~g~vVG~KKtLvFY~GkaprG~KTgWVMhEYrL~~~~~~~s~~~~~~~~~~dd~VLCRIYkK~  171 (437)
                      +++||||++|++|+|...|++||+||+|+||.|+++++.||+|+||||+|........ .........++|||||||+|+
T Consensus        91 t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~-~~~~~~~~~~~wVlCrvf~K~  169 (174)
T 3ulx_A           91 AGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAA-GAKKGSLRLDDWVLCRLYNKK  169 (174)
T ss_dssp             ETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC------------CCSSEEEEEEEESC
T ss_pred             cCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccc-ccccCCCCCCCEEEEEEEEcC
Confidence            9999999999999999889999999999999999999999999999999998642110 011123467899999999998


Q ss_pred             CCCC
Q 046218          172 KKSD  175 (437)
Q Consensus       172 r~~e  175 (437)
                      +.-+
T Consensus       170 ~~~~  173 (174)
T 3ulx_A          170 NEWE  173 (174)
T ss_dssp             C---
T ss_pred             CCcC
Confidence            6543

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=9.3e-56  Score=405.27  Aligned_cols=154  Identities=51%  Similarity=0.942  Sum_probs=130.3

Q ss_pred             cccCCCCceeCCCHHHHHHHHHHhhhcCCCCCCCceeecCCCCCCCCCcccc---cCceEEeecCccccCCCCCCCcccc
Q 046218           16 LNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQ---EEKTLYFFTPRDRKYPKGTRPNRAA   92 (437)
Q Consensus        16 ~~~LPPGFRF~PTDEELV~~YLrrKi~G~Plp~~iI~EvDVY~~dPWELp~~---ge~EWYFFSpR~rKy~nG~R~nRat   92 (437)
                      ...|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.   ++++||||++|++||++|.|++|++
T Consensus        14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t   93 (171)
T 1ut7_A           14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVA   93 (171)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEE
T ss_pred             ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccC
Confidence            4789999999999999999999999999999999999999999999999987   7899999999999999999999999


Q ss_pred             ccceeEecCCCeeecCCCCceeEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCCCCCcEEEEEEEEeCC
Q 046218           93 GRGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKDK  172 (437)
Q Consensus        93 GgGyWKatG~dK~I~s~g~vVG~KKtLvFY~GkaprG~KTgWVMhEYrL~~~~~~~s~~~~~~~~~~dd~VLCRIYkK~r  172 (437)
                      ++||||++|++++|...+++||+||+|+||.|+++++.||+|+||||+|.....      .......++|||||||+|++
T Consensus        94 ~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~------~~~~~~~~~~VlCrv~~k~~  167 (171)
T 1ut7_A           94 GSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR------RNGSTKLDDWVLCRIYKKQS  167 (171)
T ss_dssp             TTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------CCEEEEEEEECC-
T ss_pred             CCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc------ccCcccCCCEEEEEEEEcCC
Confidence            999999999999999888999999999999999999999999999999998541      11234568999999999987


Q ss_pred             CCC
Q 046218          173 KSD  175 (437)
Q Consensus       173 ~~e  175 (437)
                      ..+
T Consensus       168 ~~~  170 (171)
T 1ut7_A          168 SAQ  170 (171)
T ss_dssp             ---
T ss_pred             CCC
Confidence            643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	437
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-58

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  187 bits (477), Expect = 1e-58
 Identities = 80/170 (47%), Positives = 101/170 (59%), Gaps = 13/170 (7%)

Query: 4   VEQQQRVAMLKYLNSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQD 63
           +++   +  L    S PPG+RF PTD+EL++ YL  KA         I +I+LY   P  
Sbjct: 6   IQETDPLTQL----SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWV 61

Query: 64  LSEQ---EEKTLYFFTPRDRKYPKGTRPNRAAGRGYWKATGVDNIIGRKENPIGYRKSLV 120
           L  +    EK  YFF+PRDRKYP G+RPNR AG GYWKATG D II  +   +G +K+LV
Sbjct: 62  LPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALV 121

Query: 121 YYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLK 170
           +Y G   K  KTNWIMHEYR+   S    S       KLDDWVLC++Y K
Sbjct: 122 FYIGKAPKGTKTNWIMHEYRLIEPSRRNGS------TKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	437
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.2e-53  Score=383.14  Aligned_cols=149  Identities=52%  Similarity=0.972  Sum_probs=128.7

Q ss_pred             ccCCCCceeCCCHHHHHHHHHHhhhcCCCCCCCceeecCCCCCCCCCcccc---cCceEEeecCccccCCCCCCCccccc
Q 046218           17 NSFPPGYRFCPTDKELVLDYLKNKAMNKPLPPNKIMDINLYNHGPQDLSEQ---EEKTLYFFTPRDRKYPKGTRPNRAAG   93 (437)
Q Consensus        17 ~~LPPGFRF~PTDEELV~~YLrrKi~G~Plp~~iI~EvDVY~~dPWELp~~---ge~EWYFFSpR~rKy~nG~R~nRatG   93 (437)
                      ++|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.   ++++||||+++++++++|.|.+|+++
T Consensus        15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~R~~g   94 (166)
T d1ut7a_          15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAG   94 (166)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEET
T ss_pred             ccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCccccccC
Confidence            589999999999999999999999999999999999999999999999987   78899999999999999999999999


Q ss_pred             cceeEecCCCeeecCCCCceeEEEEEEEeeCCCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCCCCCcEEEEEEEEeC
Q 046218           94 RGYWKATGVDNIIGRKENPIGYRKSLVYYQGYPKKSKKTNWIMHEYRIDHKSPARSSTAAPHDMKLDDWVLCKVYLKD  171 (437)
Q Consensus        94 gGyWKatG~dK~I~s~g~vVG~KKtLvFY~GkaprG~KTgWVMhEYrL~~~~~~~s~~~~~~~~~~dd~VLCRIYkK~  171 (437)
                      +|+||++|+++.|.++|++||+||+|+||+++++++.||+|+||||+|.+....      ......++|||||||+|+
T Consensus        95 ~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~------~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          95 SGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR------NGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             TEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------CCEEEEEEEECC
T ss_pred             CCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccc------cCccccCCEEEEEEEecC
Confidence            999999999999999899999999999999999999999999999999985421      133457899999999985