Citrus Sinensis ID: 046231

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
ECGHVKELGFVWLKHKQKKKHKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSITFKTPAGLS
Secondary Structure (PSIPRED)
cccEEEEcEEEEEEEcccEEEEEEEEEEEEccEEEEEEEcccEEEEEEEEEEEEEEEEEEEEEEEcccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccEEEEEEEEEEEEccEEEEEEEcccEEEEcEEEEEEEEEEEEEEEEEEcccccccEEEEEcccccc
Coil and Loop (DISEMBL)
ECGHVKELGFVWLKHkqkkkhkfENVVVWFDTEVTAYFERNkiknltgvkaKEFLIWISLCEIyvngsspngsitfktpagls
Flexible Loop (DISEMBL)
ecghvkelgfvwlkhkqkkkhkfenvVVWFDTEVTAYfernkiknltgvkaKEFLIWISLCEIyvngsspngsitfktpagls
Low Complexity Region (SEG)
ECGHVKELGFVWLkhkqkkkhkFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSITFKTPAGLS
Disordered region (IsUnstruct)
****VKELGFVWLKHKQKKKHKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNG****************
Disordered Region (DISOPRED)
ECGHVKELGFVWLKHKQKKKHKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSITFKTPAGL*
Disordered Region (DISEMBL)
ECGHVKELGFVWLKHKQKKKHKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSITFKTPAGLS
Disordered Region (DISPRO)
*CGHVKELGFVWLKHKQKKKHKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSITFKTP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ECGHVKELGFVWLKHKQKKKHKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSITFKTPAGLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
224108792	182	predicted protein [Populus trichocarpa]	1.0	0.456	0.654	4e-23
255556478	181	conserved hypothetical protein [Ricinus	1.0	0.458	0.674	1e-22
15240514	171	uncharacterized protein [Arabidopsis tha	0.963	0.467	0.641	3e-22
225450543	166	PREDICTED: uncharacterized protein LOC10	0.975	0.487	0.619	6e-22
330318610	167	hypothetical protein [Camellia sinensis]	0.987	0.491	0.623	7e-22
330318682	144	hypothetical protein [Camellia sinensis]	0.987	0.569	0.623	8e-22
356519899	164	PREDICTED: uncharacterized protein LOC10	1.0	0.506	0.602	1e-21
449443512	196	PREDICTED: uncharacterized protein LOC10	0.975	0.413	0.607	2e-20
449449036	181	PREDICTED: uncharacterized protein LOC10	0.987	0.453	0.6	1e-19
449449038	170	PREDICTED: uncharacterized protein LOC10	0.987	0.482	0.6	1e-19

>gi|224108792|ref|XP_002314969.1| predicted protein [Populus trichocarpa] gi|222864009|gb|EEF01140.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 1   ECGHVKELGFVWLKHKQKKK-HKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWIS 59
           E  ++K+ GFV LKH  K+K HKF+ V V +D EVTAYFE N+I+NLTGVKAKEFLIWI+
Sbjct: 67  EYRYIKDTGFVSLKHNSKRKDHKFDKVAVCYDNEVTAYFEPNRIRNLTGVKAKEFLIWIT 126

Query: 60  LCEIYVNGSSPNGSITFKTPAGLS 83
           L EIYV+G  P   ITFKTPAG S
Sbjct: 127 LSEIYVSGDIPVALITFKTPAGFS 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556478|ref|XP_002519273.1| conserved hypothetical protein [Ricinus communis] gi|223541588|gb|EEF43137.1| conserved hypothetical protein [Ricinus communis]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 67/86 (77%), Gaps = 3/86 (3%)

Query: 1   ECGHVKELGFVWLKHKQKKK-HKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWIS 59
           E G+VK+ GFVWL+HK+K+  HKFE VV+ +DTEVTAYFE  KIKNLTGVKAK+FLIWI+
Sbjct: 70  EFGYVKDTGFVWLRHKKKRDYHKFEKVVISYDTEVTAYFEHKKIKNLTGVKAKDFLIWIT 129

Query: 60  LCEIYVNGSS--PNGSITFKTPAGLS 83
           L EI V   S      ITFKTPAGLS
Sbjct: 130 LSEICVKDKSCAAAACITFKTPAGLS 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240514|ref|NP_199771.1| uncharacterized protein [Arabidopsis thaliana] gi|10177627|dbj|BAB10774.1| unnamed protein product [Arabidopsis thaliana] gi|52354533|gb|AAU44587.1| hypothetical protein AT5G49600 [Arabidopsis thaliana] gi|55740681|gb|AAV63933.1| hypothetical protein At5g49600 [Arabidopsis thaliana] gi|332008451|gb|AED95834.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 68/92 (73%), Gaps = 12/92 (13%)

Query: 1   ECGHVKELGFVWLKHKQKKKH----------KFENVVVWFDTEVTAYFERNKIKNLTGVK 50
           ECG+VK+ GFVWLKHK+KKK           +F+NVVV F+ EVTAYFE N+IK LTGVK
Sbjct: 44  ECGYVKDTGFVWLKHKEKKKEDQKRRYQDLLRFDNVVVCFEDEVTAYFEPNRIKKLTGVK 103

Query: 51  AKEFLIWISLCEIYVNGSSPNGSITFKTPAGL 82
           AKEF++WISL EI VN SS  G ITFKT  GL
Sbjct: 104 AKEFMVWISLGEIQVNRSS--GLITFKTEVGL 133

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450543|ref|XP_002281636.1| PREDICTED: uncharacterized protein LOC100245914 [Vitis vinifera]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 65/84 (77%), Gaps = 3/84 (3%)

Query: 1   ECGHVKELGFVWLKHKQKKKHKFENV--VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
           ECG+V+E GFVWLK K+K  HKFE +  +V ++ E+TAY E+NKIK LTGVK KE L+WI
Sbjct: 46  ECGYVRETGFVWLKQKKKTIHKFEKIGKLVSYEPEITAYVEQNKIKKLTGVKTKELLLWI 105

Query: 59  SLCEIYVNGSSPNGSITFKTPAGL 82
           +L +IYV+   P G ITFKTPAGL
Sbjct: 106 TLSDIYVD-DPPTGKITFKTPAGL 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330318610|gb|AEC10970.1| hypothetical protein [Camellia sinensis]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 3/85 (3%)

Query: 1   ECGHVKELGFVWLKHKQKKKHKFENV--VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
           ECG+V+E GFVWLK K+K +HKFE +  +V + TEVTAY E NKIK LTGVK KE L+WI
Sbjct: 46  ECGYVRETGFVWLKQKRKTEHKFEKIGKLVSYATEVTAYVEPNKIKKLTGVKTKELLLWI 105

Query: 59  SLCEIYVNGSSPNGSITFKTPAGLS 83
           +L +IYV+   P G ITF+ PAGLS
Sbjct: 106 TLSDIYVD-DPPTGKITFQIPAGLS 129

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330318682|gb|AEC11001.1| hypothetical protein [Camellia sinensis]

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 3/85 (3%)

Query: 1   ECGHVKELGFVWLKHKQKKKHKFENV--VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
           ECG+V+E GFVWLK K+K +HKFE +  +V + TEVTAY E NKIK LTGVK KE L+WI
Sbjct: 46  ECGYVRETGFVWLKQKRKTEHKFEKIGKLVSYATEVTAYVEPNKIKKLTGVKTKELLLWI 105

Query: 59  SLCEIYVNGSSPNGSITFKTPAGLS 83
           +L +IYV+   P G+ITF  PAGLS
Sbjct: 106 TLSDIYVD-DPPTGTITFHIPAGLS 129

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519899|ref|XP_003528606.1| PREDICTED: uncharacterized protein LOC100784975 [Glycine max]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 67/83 (80%)

Query: 1   ECGHVKELGFVWLKHKQKKKHKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISL 60
           ECG+VKE+GFVWLK K+K++H+ +N++V +DT VTAY E+NKIKNLTGVKA++FL+W +L
Sbjct: 53  ECGYVKEIGFVWLKLKKKREHRIDNILVCYDTVVTAYVEQNKIKNLTGVKARDFLLWFTL 112

Query: 61  CEIYVNGSSPNGSITFKTPAGLS 83
            EI V G+     ITFK+  GLS
Sbjct: 113 NEICVKGNPEEPVITFKSLVGLS 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443512|ref|XP_004139521.1| PREDICTED: uncharacterized protein LOC101214389 [Cucumis sativus] gi|449530432|ref|XP_004172199.1| PREDICTED: uncharacterized LOC101214389 [Cucumis sativus]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 62/84 (73%), Gaps = 3/84 (3%)

Query: 1   ECGHVKELGFVWLKHKQKKKHKFENV--VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
           ECG ++E GFVWLK K+   HKFE +  +V + TEVTA  E+NKIK LTGVK KE LIW+
Sbjct: 80  ECGIIRETGFVWLKQKKSTTHKFEKIGKLVSYATEVTATVEKNKIKKLTGVKTKELLIWV 139

Query: 59  SLCEIYVNGSSPNGSITFKTPAGL 82
           SL +IYV+   P G ITF+TPAGL
Sbjct: 140 SLSDIYVD-DPPTGKITFQTPAGL 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449036|ref|XP_004142271.1| PREDICTED: uncharacterized protein LOC101204611 isoform 1 [Cucumis sativus] gi|449525441|ref|XP_004169726.1| PREDICTED: uncharacterized protein LOC101227935 isoform 1 [Cucumis sativus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 62/85 (72%), Gaps = 3/85 (3%)

Query: 1   ECGHVKELGFVWLKHKQKKKHKFENV--VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
           ECG+VKE GFVW+K K+   HKF  +   V +  EVTA  E+NK+KNLTGVKAKE LIW+
Sbjct: 47  ECGYVKETGFVWMKQKKAITHKFNKIGKQVSYAKEVTANVEKNKVKNLTGVKAKEVLIWL 106

Query: 59  SLCEIYVNGSSPNGSITFKTPAGLS 83
           +L EIYV+   P G+ITFK P GLS
Sbjct: 107 TLSEIYVD-DPPTGNITFKIPTGLS 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449038|ref|XP_004142272.1| PREDICTED: uncharacterized protein LOC101204611 isoform 2 [Cucumis sativus] gi|449525443|ref|XP_004169727.1| PREDICTED: uncharacterized protein LOC101227935 isoform 2 [Cucumis sativus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 62/85 (72%), Gaps = 3/85 (3%)

Query: 1   ECGHVKELGFVWLKHKQKKKHKFENV--VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
           ECG+VKE GFVW+K K+   HKF  +   V +  EVTA  E+NK+KNLTGVKAKE LIW+
Sbjct: 47  ECGYVKETGFVWMKQKKAITHKFNKIGKQVSYAKEVTANVEKNKVKNLTGVKAKEVLIWL 106

Query: 59  SLCEIYVNGSSPNGSITFKTPAGLS 83
           +L EIYV+   P G+ITFK P GLS
Sbjct: 107 TLSEIYVD-DPPTGNITFKIPTGLS 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:2157824	171	AT5G49600 "AT5G49600" [Arabido	0.963	0.467	0.576	4e-19
TAIR|locus:2027579	166	SVB "SMALLER WITH VARIABLE BRA	1.0	0.5	0.458	7.9e-14
TAIR|locus:2203043	179	AT1G09310 [Arabidopsis thalian	0.975	0.452	0.482	1.3e-13
TAIR|locus:2170463	143	AT5G46230 [Arabidopsis thalian	0.987	0.573	0.423	1.3e-13
TAIR|locus:2134966	157	AT4G24130 [Arabidopsis thalian	0.975	0.515	0.357	3.2e-10
TAIR|locus:2198247	157	AT1G30020 [Arabidopsis thalian	0.783	0.414	0.373	3.6e-09
TAIR|locus:2133264	167	AT4G02370 "AT4G02370" [Arabido	0.542	0.269	0.333	0.00012
TAIR|locus:505006096	166	AT1G02816 "AT1G02816" [Arabido	0.542	0.271	0.333	0.00048

TAIR|locus:2157824 AT5G49600 "AT5G49600" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 53/92 (57%), Positives = 60/92 (65%)

Query:     1 ECGHVKELGFVWLXXXXXXXXX----------FENVVVWFDTEVTAYFERNKIKNLTGVK 50
             ECG+VK+ GFVWL                   F+NVVV F+ EVTAYFE N+IK LTGVK
Sbjct:    44 ECGYVKDTGFVWLKHKEKKKEDQKRRYQDLLRFDNVVVCFEDEVTAYFEPNRIKKLTGVK 103

Query:    51 AKEFLIWISLCEIYVNGSSPNGSITFKTPAGL 82
             AKEF++WISL EI VN SS  G ITFKT  GL
Sbjct:   104 AKEFMVWISLGEIQVNRSS--GLITFKTEVGL 133

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027579 SVB "SMALLER WITH VARIABLE BRANCHES" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 39/85 (45%), Positives = 51/85 (60%)

Query:     1 ECGHVKELGFVWLXXXXXXXXXFENV--VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
             E G+ +E G VWL         FE +  +V + TEV A  E  KIK LTGVKAKE LIW+
Sbjct:    46 EVGYDRETGIVWLKQKKSITHKFEAIGKLVSYATEVIAQVEVGKIKKLTGVKAKELLIWV 105

Query:    59 SLCEIYVNGSSPNGSITFKTPAGLS 83
             +L E+ +   + +G I F+TP GLS
Sbjct:   106 TLNELVLEQPTSSGKINFRTPTGLS 130

GO:0005737 "cytoplasm" evidence=ISM

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2203043 AT1G09310 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 41/85 (48%), Positives = 49/85 (57%)

Query:     1 ECGHVKELGFVWLXXXXXXXXXFENV--VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
             E G+ +E G VWL         F  +  +V + TEVTA  E  KIK LTGVKAKE LIW+
Sbjct:    46 EVGYDRESGVVWLKQKKSITHKFTEIDKLVSYGTEVTAIVETGKIKKLTGVKAKELLIWV 105

Query:    59 SLCEIYVNGSSPNGSITFKTPAGLS 83
             ++ EIY     P   ITFKTP  LS
Sbjct:   106 TINEIYTE--EPPTKITFKTPTTLS 128

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048046 "apoplast" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2170463 AT5G46230 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 36/85 (42%), Positives = 50/85 (58%)

Query:     1 ECGHVKELGFVWLXXXXXXXXXFENVV--VWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
             E GH K  G+VW+         F+ +   V +D+EVTA  E  ++  LTG+K+KE LIW+
Sbjct:    48 EIGHNKSTGYVWIKIKNKVQHRFKAIGRNVSYDSEVTAILENRRMSQLTGIKSKEILIWV 107

Query:    59 SLCEIYVNGSSPNGSITFKTPAGLS 83
             ++ EI+VN   P   ITF  P GLS
Sbjct:   108 TISEIFVNHQDPT-QITFANPTGLS 131

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134966 AT4G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query:     1 ECGHVKELGFVWLXXXXXXXXXFE--NVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
             ECG V+  G+VW+         FE  N  V +  EVTAY ++  +K +TGVK+K+  +W+
Sbjct:    50 ECGRVRATGYVWMKQDTPYEHFFEATNTRVSYGLEVTAYVDKCCMKKMTGVKSKQMFLWV 109

Query:    59 SLCEIYVNGSSPNGSITFKTPAGL 82
              + E+ +     +  I FKTP G+
Sbjct:   110 PIVEMSME-EPKSKKIYFKTPMGI 132

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2198247 AT1G30020 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query:     1 ECGHVKELGFVWLXXXXXXXXXFENVV--VWFDTEVTAYFERNKIKNLTGVKAKEFLIWI 58
             E G+ K  GFVW+         F  +   V +DTE+TA+ E  +++ LTGVK+KE +IW+
Sbjct:    48 EVGYNKTKGFVWMRMRSKIEHTFREIGRRVLYDTEITAFVEDRRMRRLTGVKSKELMIWV 107

Query:    59 SLCEIYV 65
              + +I++
Sbjct:   108 PVNDIFI 114

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2133264 AT4G02370 "AT4G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00012, P = 0.00012
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query:    30 FDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSI 74
             + + ++ Y   NK+K LTGVK K   +W+++ E+  NG     S+
Sbjct:    82 YKSTISGYISENKLKKLTGVKVKVLFLWLNIVEVIRNGDEMEFSV 126

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:505006096 AT1G02816 "AT1G02816" [Arabidopsis thaliana (taxid:3702)]

 Score = 88 (36.0 bits), Expect = 0.00048, P = 0.00048
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query:    30 FDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSI 74
             + + ++ Y   NKI  LTGVK K   +W+++ E+  NG     S+
Sbjct:    82 YKSTISGYISENKITKLTGVKVKVLFLWLNIVEVIRNGDELEFSV 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.444    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       83        74   0.00091  102 3  11 22  0.37    29
                                                     29  0.46    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  108 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.16u 0.12s 7.28t   Elapsed:  00:00:02
  Total cpu time:  7.16u 0.12s 7.28t   Elapsed:  00:00:02
  Start:  Sat May 11 02:46:05 2013   End:  Sat May 11 02:46:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
pfam04398	108	pfam04398, DUF538, Protein of unknown function, DU	7e-22

>gnl|CDD|218064 pfam04398, DUF538, Protein of unknown function, DUF538

 Score = 81.1 bits (201), Expect = 7e-22
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 1  ECGHVKELGFVWLKHKQKKKHKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISL 60
          E    +  G  W+      +  FE   V +D  VT Y  + ++  L GVK K   +W+ +
Sbjct: 22 EYTLDETTGKFWVYLNGTCEFTFEGYSVRYDPTVTGYISKGRLSGLEGVKVKVLFLWVPI 81

Query: 61 CEIYVNGSSPNGSITFKT 78
           EI V+       +TF  
Sbjct: 82 VEISVDDG---DKLTFSV 96

This family consists of several plant proteins of unknown function. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
PF04398	110	DUF538: Protein of unknown function, DUF538; Inter	99.97

>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function

Probab=99.97  E-value=1.1e-31  Score=180.44  Aligned_cols=78  Identities=45%  Similarity=0.836  Sum_probs=60.4

Q ss_pred             CcceeccccEEEEEecCeEEEEEceEEEEEccEEEEEEecCceeeceeeeEEEEEEeeEeeEEEEcCCCCCCeEEEEcCC
Q 046231            1 ECGHVKELGFVWLKHKQKKKHKFENVVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSITFKTPA   80 (83)
Q Consensus         1 e~g~~~~tG~~~v~l~~~c~~~f~~~~v~Y~~~Itg~l~~gki~~l~GVk~K~lf~W~~v~eI~vdg~~~sgkI~F~~~~   80 (83)
                      ||++|++||+|||+|+++|+|+|++++|+|+++|||+|++|+|++|+||++|+||+|++|+||.++    +++|+|++ +
T Consensus        22 ~y~l~~~tG~f~v~l~~~C~~~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~W~~v~~i~~~----~~~i~F~~-g   96 (110)
T PF04398_consen   22 EYGLNRDTGFFWVKLKSPCEFRFEGYLVSYDSEITGYIEKGKIKNLTGVKVKELFLWVPVTEISVD----GDKIYFKV-G   96 (110)
T ss_dssp             EEEE-TTT-SEEEE-SS-EEEESTTSEEEE-SEEEEEE-SS-EEEEES-EEE-SSSEES---BEE-----SSSEE-TT-S
T ss_pred             EEEEecCCcEEEEEecCCEEEEEEEEEEEEcCeEEEEECCCcCccccCEEEEEEEEEeeEEEEEEc----CCEEEEEE-e
Confidence            689999999999999999999999978999999999999999999999999999999999999996    88999999 6


Q ss_pred             CCC
Q 046231           81 GLS   83 (83)
Q Consensus        81 g~~   83 (83)
                      +++
T Consensus        97 ~~s   99 (110)
T PF04398_consen   97 GIS   99 (110)
T ss_dssp             SSS
T ss_pred             eEe
Confidence            653

; PDB: 1YDU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	2e-16
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-06

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1 Length = 170

 Score = 68.3 bits (167), Expect = 2e-16
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 1   ECGHVKELGFVWLKHKQKKKHKFEN-VVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWIS 59
                +E   + +      +  +++  V+ F T VT + E+ K+ ++ G+K K  +IW+ 
Sbjct: 74  NYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK-VMIWVK 132

Query: 60  LCEIYVNGSSPNGSITFKT 78
           +  I  +       + F  
Sbjct: 133 VTSISTDA----SKVYFTA 147

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 8e-06
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 15/40 (37%)

Query: 39 ERNKIKNLTGVKAKEFLIWISLCEIYVNGSSP----NGSI 74
          E+  +K L            SL ++Y + S+P      ++
Sbjct: 18 EKQALKKLQA----------SL-KLYADDSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	99.95

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1

Probab=99.95  E-value=1.7e-29  Score=180.15  Aligned_cols=75  Identities=21%  Similarity=0.392  Sum_probs=71.0

Q ss_pred             CcceeccccEEEEEecCeEEEEEceE-EEEEccEEEEEEecCceeeceeeeEEEEEEeeEeeEEEEcCCCCCCeEEEEcC
Q 046231            1 ECGHVKELGFVWLKHKQKKKHKFENV-VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSITFKTP   79 (83)
Q Consensus         1 e~g~~~~tG~~~v~l~~~c~~~f~~~-~v~Y~~~Itg~l~~gki~~l~GVk~K~lf~W~~v~eI~vdg~~~sgkI~F~~~   79 (83)
                      |||||++||+|||+|+++|+|+|++. +|+|+++|||+|++|+|++|+||++|+| +|++|++|.++    +++|+|++ 
T Consensus        74 ~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~L-lWv~V~eI~v~----~~kI~F~v-  147 (170)
T 1ydu_A           74 NYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVM-IWVKVTSISTD----ASKVYFTA-  147 (170)
T ss_dssp             EEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESS-SEESCCCBEEC----SSSEECTT-
T ss_pred             EEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEEE-EEeeEEEEEEe----CCEEEEEE-
Confidence            68999999999999999999999865 8999999999999999999999999999 99999999996    78999997 


Q ss_pred             CCC
Q 046231           80 AGL   82 (83)
Q Consensus        80 ~g~   82 (83)
                       |+
T Consensus       148 -Gi  149 (170)
T 1ydu_A          148 -GM  149 (170)
T ss_dssp             -SS
T ss_pred             -cC
Confidence             55

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	83
d1ydua1	169	b.162.1.1 (A:2-170) Hypothetical protein At5g01610	1e-16

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 169

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 67.4 bits (165), Expect = 1e-16
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 1   ECGHVKELGFVWLKHKQKKKHKFEN-VVVWFDTEVTAYFERNKIKNLTGVKAKEFLIWIS 59
                +E   + +      +  +++  V+ F T VT + E+ K+ ++ G+K K  +IW+ 
Sbjct: 73  NYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK-VMIWVK 131

Query: 60  LCEIYVNGSSPNGSITFKT 78
           +  I  +       + F  
Sbjct: 132 VTSISTDA----SKVYFTA 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1ydua1	169	Hypothetical protein At5g01610 {Thale cress (Arabi	99.95

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=2.2e-29  Score=177.80  Aligned_cols=75  Identities=21%  Similarity=0.406  Sum_probs=70.3

Q ss_pred             CcceeccccEEEEEecCeEEEEEceE-EEEEccEEEEEEecCceeeceeeeEEEEEEeeEeeEEEEcCCCCCCeEEEEcC
Q 046231            1 ECGHVKELGFVWLKHKQKKKHKFENV-VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSITFKTP   79 (83)
Q Consensus         1 e~g~~~~tG~~~v~l~~~c~~~f~~~-~v~Y~~~Itg~l~~gki~~l~GVk~K~lf~W~~v~eI~vdg~~~sgkI~F~~~   79 (83)
                      |++||++||+|||+|+++|+|+|++. +|+|+++|||+|++|+|++|+|||+| +|+|++|+||.+|    +++|+|++ 
T Consensus        73 ~Y~l~~~TG~f~V~l~~~C~~~f~~sy~v~Y~~~VtG~ls~Gki~~L~GVkvK-lflWv~V~eI~vd----~~kI~F~v-  146 (169)
T d1ydua1          73 NYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK-VMIWVKVTSISTD----ASKVYFTA-  146 (169)
T ss_dssp             EEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEE-SSSEESCCCBEEC----SSSEECTT-
T ss_pred             EEEEECCCcEEEEEeCCCEEEEecCceEEEEcCEEEEEEcCCcCccccceEEE-EEEEEEEEEEEEc----CCeEEEEe-
Confidence            57999999999999999999999875 89999999999999999999999999 7899999999998    67999995 


Q ss_pred             CCC
Q 046231           80 AGL   82 (83)
Q Consensus        80 ~g~   82 (83)
                       ||
T Consensus       147 -GI  148 (169)
T d1ydua1         147 -GM  148 (169)
T ss_dssp             -SS
T ss_pred             -cc
Confidence             55