Citrus Sinensis ID: 046235

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----

MAVLADSNDNELEQLQDGGEGFTVPETNSFGQTFRDYGVESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW

ccccccccccHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccEEcccccccccEEcccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHHHHHHccccccc

cHHHHHccccHHHHccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHEHHHHHHHHcccEEEccccccccccEEEcccccccccccccEEcHHHHccccccccccccccccccccccccccEEEEcccHHHHHHHHHcccccccHHHHHHHHHcccccccccccHHHHccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccc

mavladsndneleqlqdggegftvpetnsfgqtfrdyGVESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNefvdesdpdldepqIEHLLQTAEAIrkdypnedwlHLTGLIHDLgkvllhpdfgelpqwavvgdtfpvgcafdesivhhkyfkenpdynnpafnakygaysegrgldnvfmswghDDYMYLVAKEnkttlpsaglFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKifnkydlyskskvrvdveKVKPYYLSLIEKYFPEKLRW

mavladsndneLEQLQDGGEGFTVPETNSFGQTFRDYGVESERQKgveefyrtqhinqtcdfVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDlyskskvrvdvekvkpyylsliekyfpeklrw

*********************************FRDYG*******GVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVD**********IEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFP*****

********DNELEQLQDG**GFTVPETNSFGQTFRDYGVESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW

*******************EGFTVPETNSFGQTFRDYGVESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		294	2.2.26 [Sep-21-2011]
Q8L799		311	Inositol oxygenase 1 OS=A	yes	no	0.982	0.929	0.792	1e-142
Q5Z8T3		308	Probable inositol oxygena	yes	no	0.965	0.922	0.786	1e-134
Q8H1S0		317	Inositol oxygenase 4 OS=A	no	no	1.0	0.927	0.750	1e-132
Q9FJU4		314	Inositol oxygenase 5 OS=A	no	no	0.976	0.914	0.753	1e-128
O82200		317	Inositol oxygenase 2 OS=A	no	no	0.982	0.911	0.724	1e-126
Q54GH4		292	Inositol oxygenase OS=Dic	yes	no	0.884	0.890	0.552	2e-80
Q4V8T0		278	Inositol oxygenase OS=Dan	yes	no	0.819	0.866	0.510	9e-67
Q9QXN5		285	Inositol oxygenase OS=Mus	yes	no	0.904	0.933	0.461	7e-66
Q5REY9		285	Inositol oxygenase OS=Pon	yes	no	0.904	0.933	0.464	4e-65
Q9UGB7		285	Inositol oxygenase OS=Hom	yes	no	0.904	0.933	0.464	5e-65

>sp\|Q8L799\|MIOX1_ARATH Inositol oxygenase 1 OS=Arabidopsis thaliana GN=MIOX1 PE=2 SV=1	Back alignment and function desciption

 Score =  504 bits (1298), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/299 (79%), Positives = 262/299 (87%), Gaps = 10/299 (3%)

Query: 6   DSNDNELEQLQDGGE----------GFTVPETNSFGQTFRDYGVESERQKGVEEFYRTQH 55
           D+ D  +E+ Q  G+          GF  P TNSFG+TFRDY  ESER++GVEEFYR  H
Sbjct: 13  DAGDEIVEKNQGNGKEEETELVLDAGFEAPHTNSFGRTFRDYDAESERRRGVEEFYRVNH 72

Query: 56  INQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRK 115
           I QT DFV++MREEY KLNR EMSIWECCELLNEF+DESDPDLDEPQIEHLLQTAEAIRK
Sbjct: 73  IGQTVDFVRKMREEYEKLNRTEMSIWECCELLNEFIDESDPDLDEPQIEHLLQTAEAIRK 132

Query: 116 DYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPD 175
           DYP+EDWLHLTGLIHDLGKVLLH  FGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPD
Sbjct: 133 DYPDEDWLHLTGLIHDLGKVLLHSSFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPD 192

Query: 176 YNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALH 235
           Y+NP++N+KYG Y+EG GLDNV MSWGHDDYMYLVAKEN+TTLPSAGLFIIRYHSFYALH
Sbjct: 193 YDNPSYNSKYGIYTEGCGLDNVLMSWGHDDYMYLVAKENQTTLPSAGLFIIRYHSFYALH 252

Query: 236 RADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 294
           +++AYKHLMN ED EN+KWLK+FNKYDLYSKSKVRV+VE+VKPYYLSL  KYFP KL+W
Sbjct: 253 KSEAYKHLMNNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSLTNKYFPSKLKW 311

Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in plant ascorbate biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 3EC: .EC: 9EC: 9EC: .EC: 1

>sp\|Q5Z8T3\|MIOX_ORYSJ Probable inositol oxygenase OS=Oryza sativa subsp. japonica GN=Os06g0561000 PE=2 SV=1	Back alignment and function description

>sp\|Q8H1S0\|MIOX4_ARATH Inositol oxygenase 4 OS=Arabidopsis thaliana GN=MIOX4 PE=2 SV=1	Back alignment and function description

>sp\|Q9FJU4\|MIOX5_ARATH Inositol oxygenase 5 OS=Arabidopsis thaliana GN=MIOX5 PE=2 SV=1	Back alignment and function description

>sp\|O82200\|MIOX2_ARATH Inositol oxygenase 2 OS=Arabidopsis thaliana GN=MIOX2 PE=2 SV=2	Back alignment and function description

>sp\|Q54GH4\|MIOX_DICDI Inositol oxygenase OS=Dictyostelium discoideum GN=miox PE=3 SV=1	Back alignment and function description

>sp\|Q4V8T0\|MIOX_DANRE Inositol oxygenase OS=Danio rerio GN=miox PE=2 SV=1	Back alignment and function description

>sp\|Q9QXN5\|MIOX_MOUSE Inositol oxygenase OS=Mus musculus GN=Miox PE=1 SV=2	Back alignment and function description

>sp\|Q5REY9\|MIOX_PONAB Inositol oxygenase OS=Pongo abelii GN=MIOX PE=2 SV=1	Back alignment and function description

>sp\|Q9UGB7\|MIOX_HUMAN Inositol oxygenase OS=Homo sapiens GN=MIOX PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		294
224099667		283	predicted protein [Populus trichocarpa]	0.935	0.971	0.905	1e-147
225442398		304	PREDICTED: inositol oxygenase 1 [Vitis v	0.959	0.927	0.845	1e-141
30683840		311	inositol oxygenase 1 [Arabidopsis thalia	0.982	0.929	0.792	1e-140
238478480		309	inositol oxygenase 1 [Arabidopsis thalia	0.931	0.886	0.846	1e-140
110740103		294	hypothetical protein [Arabidopsis thalia	0.931	0.931	0.846	1e-140
26451656		311	unknown protein [Arabidopsis thaliana] g	0.982	0.929	0.789	1e-140
388522589		305	unknown [Medicago truncatula]	0.962	0.927	0.838	1e-139
388493838		305	unknown [Lotus japonicus]	0.962	0.927	0.838	1e-139
225445025		309	PREDICTED: probable inositol oxygenase [	0.972	0.925	0.819	1e-138
350538319		317	myo-inositol oxygenase [Solanum lycopers	0.959	0.889	0.822	1e-138

>gi\|224099667\|ref\|XP_002311571.1\| predicted protein [Populus trichocarpa] gi\|222851391\|gb\|EEE88938.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/275 (90%), Positives = 258/275 (93%)

Query: 20  EGFTVPETNSFGQTFRDYGVESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMS 79
           EGF VP+TNSFG TFRDY +ESERQKGVEEFYRT HINQT  FVKRMREEYGKLNRVEMS
Sbjct: 9   EGFVVPDTNSFGHTFRDYDIESERQKGVEEFYRTNHINQTYGFVKRMREEYGKLNRVEMS 68

Query: 80  IWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHP 139
           IWECCELLNEF+DESDPDLDEPQIEHLLQTAEAIRKDYP+EDWLHLTGLIHDLGKVLLHP
Sbjct: 69  IWECCELLNEFIDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLLHP 128

Query: 140 DFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFM 199
            FGELPQWAVVGDTFPVGCAFDESIVHHKYF ENPD NN A+N+KYG YSEG GLD VFM
Sbjct: 129 AFGELPQWAVVGDTFPVGCAFDESIVHHKYFTENPDCNNSAYNSKYGVYSEGCGLDRVFM 188

Query: 200 SWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFN 259
           SWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFY LHR  AY+HLMNEED+ENLKWLKIFN
Sbjct: 189 SWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYTLHRTGAYRHLMNEEDVENLKWLKIFN 248

Query: 260 KYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 294
           KYDLYSKSKVR+DVEKVKPYYLSLIEKYFP KLRW
Sbjct: 249 KYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLRW 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225442398\|ref\|XP_002282395.1\| PREDICTED: inositol oxygenase 1 [Vitis vinifera] gi\|297743146\|emb\|CBI36013.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi|30683840|ref|NP_172904.2| inositol oxygenase 1 [Arabidopsis thaliana] gi|75154124|sp|Q8L799.1|MIOX1_ARATH RecName: Full=Inositol oxygenase 1; AltName: Full=Myo-inositol oxygenase 1; Short=AtMIOX1; Short=MI oxygenase 1 gi|22531100|gb|AAM97054.1| unknown protein [Arabidopsis thaliana] gi|23197958|gb|AAN15506.1| unknown protein [Arabidopsis thaliana] gi|51968372|dbj|BAD42878.1| unknown protein [Arabidopsis thaliana] gi|51971577|dbj|BAD44453.1| unknown protein [Arabidopsis thaliana] gi|332191053|gb|AEE29174.1| inositol oxygenase 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|238478480\|ref\|NP_001154337.1\| inositol oxygenase 1 [Arabidopsis thaliana] gi\|332191054\|gb\|AEE29175.1\| inositol oxygenase 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|110740103\|dbj\|BAF01953.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|26451656\|dbj\|BAC42925.1\| unknown protein [Arabidopsis thaliana] gi\|51969778\|dbj\|BAD43581.1\| unknown protein [Arabidopsis thaliana] gi\|51969808\|dbj\|BAD43596.1\| unknown protein [Arabidopsis thaliana] gi\|62321202\|dbj\|BAD94364.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|388522589\|gb\|AFK49356.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388493838\|gb\|AFK34985.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|225445025\|ref\|XP_002283119.1\| PREDICTED: probable inositol oxygenase [Vitis vinifera] gi\|297738724\|emb\|CBI27969.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|350538319\|ref\|NP_001234593.1\| myo-inositol oxygenase [Solanum lycopersicum] gi\|240248438\|gb\|ACS45396.1\| myo-inositol oxygenase [Solanum lycopersicum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		294
TAIR\|locus:2012572		311	MIOX1 "myo-inositol oxygenase	0.976	0.922	0.813	4.2e-134
TAIR\|locus:2165061		314	MIOX5 "myo-inositol oxygenase	0.976	0.914	0.753	3.6e-121
TAIR\|locus:2052015		317	MIOX2 "myo-inositol oxygenase	0.976	0.905	0.729	1.8e-119
DICTYBASE\|DDB_G0290161		292	miox "inositol oxygenase" [Dic	0.884	0.890	0.552	6.8e-79
FB\|FBgn0036262		292	CG6910 [Drosophila melanogaste	0.972	0.979	0.493	1.1e-71
ASPGD\|ASPL0000003632		312	AN5985 [Emericella nidulans (t	0.863	0.814	0.524	1.7e-68
ZFIN\|ZDB-GENE-050913-113		283	miox "myo-inositol oxygenase"	0.904	0.939	0.485	6.5e-67
CGD\|CAL0002203		340	orf19.3894 [Candida albicans (	0.863	0.747	0.513	2.8e-66
UNIPROTKB\|Q5AKC6		340	IOX1 "Likely inositol oxygenas	0.863	0.747	0.513	2.8e-66
UNIPROTKB\|G4N272		317	MGG_09462 "Inositol oxygenase	0.925	0.858	0.480	5.2e-65

TAIR\|locus:2012572 MIOX1 "myo-inositol oxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1314 (467.6 bits), Expect = 4.2e-134, P = 4.2e-134
 Identities = 235/289 (81%), Positives = 259/289 (89%)

Query:     6 DSNDNELEQLQDGGEGFTVPETNSFGQTFRDYGVESERQKGVEEFYRTQHINQTCDFVKR 65
             +  + E E + D G  F  P TNSFG+TFRDY  ESER++GVEEFYR  HI QT DFV++
Sbjct:    25 NGKEEETELVLDAG--FEAPHTNSFGRTFRDYDAESERRRGVEEFYRVNHIGQTVDFVRK 82

Query:    66 MREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHL 125
             MREEY KLNR EMSIWECCELLNEF+DESDPDLDEPQIEHLLQTAEAIRKDYP+EDWLHL
Sbjct:    83 MREEYEKLNRTEMSIWECCELLNEFIDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHL 142

Query:   126 TGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKY 185
             TGLIHDLGKVLLH  FGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDY+NP++N+KY
Sbjct:   143 TGLIHDLGKVLLHSSFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYDNPSYNSKY 202

Query:   186 GAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMN 245
             G Y+EG GLDNV MSWGHDDYMYLVAKEN+TTLPSAGLFIIRYHSFYALH+++AYKHLMN
Sbjct:   203 GIYTEGCGLDNVLMSWGHDDYMYLVAKENQTTLPSAGLFIIRYHSFYALHKSEAYKHLMN 262

Query:   246 EEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 294
              ED EN+KWLK+FNKYDLYSKSKVRV+VE+VKPYYLSL  KYFP KL+W
Sbjct:   263 NEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSLTNKYFPSKLKW 311

GO:0005506 "iron ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019310 "inositol catabolic process" evidence=IEA

GO:0050113 "inositol oxygenase activity" evidence=IEA;IMP

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006949 "syncytium formation" evidence=IGI

TAIR\|locus:2165061 MIOX5 "myo-inositol oxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2052015 MIOX2 "myo-inositol oxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290161 miox "inositol oxygenase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0036262 CG6910 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000003632 AN5985 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050913-113 miox "myo-inositol oxygenase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

CGD\|CAL0002203 orf19.3894 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AKC6 IOX1 "Likely inositol oxygenase" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N272 MGG_09462 "Inositol oxygenase 1" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9QXN5	MIOX_MOUSE	1, ., 1, 3, ., 9, 9, ., 1	0.4612	0.9047	0.9333	yes	no
Q9UGB7	MIOX_HUMAN	1, ., 1, 3, ., 9, 9, ., 1	0.4649	0.9047	0.9333	yes	no
Q4V8T0	MIOX_DANRE	1, ., 1, 3, ., 9, 9, ., 1	0.5102	0.8197	0.8669	yes	no
Q8L799	MIOX1_ARATH	1, ., 1, 3, ., 9, 9, ., 1	0.7926	0.9829	0.9292	yes	no
Q9QXN4	MIOX_RAT	1, ., 1, 3, ., 9, 9, ., 1	0.4464	0.9047	0.9333	yes	no
Q5Z8T3	MIOX_ORYSJ	1, ., 1, 3, ., 9, 9, ., 1	0.7867	0.9659	0.9220	yes	no
Q9FJU4	MIOX5_ARATH	1, ., 1, 3, ., 9, 9, ., 1	0.7534	0.9761	0.9140	no	no
A7MBE4	MIOX_BOVIN	1, ., 1, 3, ., 9, 9, ., 1	0.4575	0.9047	0.9333	yes	no
Q8H1S0	MIOX4_ARATH	1, ., 1, 3, ., 9, 9, ., 1	0.7508	1.0	0.9274	no	no
Q8WN98	MIOX_PIG	1, ., 1, 3, ., 9, 9, ., 1	0.4501	0.9047	0.9432	yes	no
Q54GH4	MIOX_DICDI	1, ., 1, 3, ., 9, 9, ., 1	0.5526	0.8843	0.8904	yes	no
O82200	MIOX2_ARATH	1, ., 1, 3, ., 9, 9, ., 1	0.7242	0.9829	0.9116	no	no
Q5REY9	MIOX_PONAB	1, ., 1, 3, ., 9, 9, ., 1	0.4649	0.9047	0.9333	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.99	0.983
3rd Layer	1.13.99.1	0.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		294
pfam05153		255	pfam05153, DUF706, Family of unknown function (DUF	1e-166

>gnl\|CDD\|191210 pfam05153, DUF706, Family of unknown function (DUF706)	Back alignment and domain information

 Score =  461 bits (1188), Expect = e-166
 Identities = 166/255 (65%), Positives = 189/255 (74%), Gaps = 2/255 (0%)

Query: 40  ESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLD 99
           E+     V EFYR QH  QT DFVK+ R E+ K  R +M+IWE  ELLN  VDESDPD D
Sbjct: 3   EAPLCDRVREFYREQHTKQTVDFVKKARAEFLKFTRAKMTIWEALELLNTLVDESDPDTD 62

Query: 100 EPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCA 159
            PQI+HLLQTAEAIR+D+P+ DW+HLTGLIHDLGKVL    FG  PQWAVVGDTFPVGCA
Sbjct: 63  LPQIQHLLQTAEAIRRDHPDPDWMHLTGLIHDLGKVLAF--FGGEPQWAVVGDTFPVGCA 120

Query: 160 FDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLP 219
           F ESIV+ + FK NPDY+NP +N KYG Y    GLDNV MSWGHD+Y+Y V K NK+TLP
Sbjct: 121 FSESIVYPESFKGNPDYDNPKYNTKYGIYQPNCGLDNVMMSWGHDEYLYQVLKHNKSTLP 180

Query: 220 SAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPY 279
              L++IRYHSFY  HR  AY HLMNE+D E LKW+K FN YDLYSKS    DVE +KPY
Sbjct: 181 EEALYMIRYHSFYPWHREGAYTHLMNEKDEEMLKWVKAFNPYDLYSKSDDPPDVEALKPY 240

Query: 280 YLSLIEKYFPEKLRW 294
           Y  LI+KYFP  L W
Sbjct: 241 YQELIDKYFPGVLEW 255

Family of uncharacterized eukaryotic function. Some members have a described putative function, but a common theme is not evident. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		294
PF05153		253	DUF706: Family of unknown function (DUF706) ; Inte	100.0
KOG1573		204	consensus Aldehyde reductase [General function pre	100.0
TIGR03276		179	Phn-HD phosphonate degradation operons associated	97.07
smart00471		124	HDc Metal dependent phosphohydrolases with conserv	95.53
TIGR00277		80	HDIG uncharacterized domain HDIG. This domain is f	93.71
PF01966		122	HD: HD domain; InterPro: IPR006674 This domain is	92.73
TIGR00488		158	putative HD superfamily hydrolase of NAD metabolis	92.7
COG4341		186	Predicted HD phosphohydrolase [General function pr	92.05
PRK00106		535	hypothetical protein; Provisional	90.32
PF08668		196	HDOD: HDOD domain; InterPro: IPR013976 This domain	90.1
TIGR01596		177	cas3_HD CRISPR-associated endonuclease Cas3-HD. CR	89.13
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	87.27
cd00077		145	HDc Metal dependent phosphohydrolases with conserv	86.93
COG2316		212	Predicted hydrolase (HD superfamily) [General func	84.93
TIGR00295		164	conserved hypothetical protein TIGR00295. This set	82.74

>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1	Back alignment and domain information

Probab=100.00  E-value=1e-144  Score=990.35  Aligned_cols=250  Identities=67%  Similarity=1.155  Sum_probs=201.4

Q ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCc
Q 046235           43 RQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDW  122 (294)
Q Consensus        43 ~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW  122 (294)
                      +++||++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+|||
T Consensus         4 ~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW   83 (253)
T PF05153_consen    4 ACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDW   83 (253)
T ss_dssp             -HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HH
T ss_pred             HhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcch
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccccchhcccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccC
Q 046235          123 LHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWG  202 (294)
Q Consensus       123 ~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWG  202 (294)
                      ||||||||||||||++  ||++|||+||||||||||+|+++|||+++|++|||.+||+||||+|||+||||||||+||||
T Consensus        84 ~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msWg  161 (253)
T PF05153_consen   84 MQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSWG  161 (253)
T ss_dssp             HHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-SS
T ss_pred             hhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecCC
Confidence            9999999999999999  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHhCCCCCCchhhhhhhhccccccccccccccccChhhHHHHHHHHHcCCccccccCCCCCChhhhhhhhHH
Q 046235          203 HDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLS  282 (294)
Q Consensus       203 HDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~~  282 (294)
                      ||||||+|||+|+||||+|||+|||||||||||++|+|+||||++|.+||+||++||||||||||+++||||+|||||++
T Consensus       162 HDEYlY~Vlk~n~~tLP~eaL~mIRyhSfypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~dLYSK~~~~pdve~l~PYY~~  241 (253)
T PF05153_consen  162 HDEYLYQVLKHNKSTLPEEALYMIRYHSFYPWHREGAYDHLMNEEDEEMLKWVKEFNKYDLYSKSDEPPDVEELKPYYQS  241 (253)
T ss_dssp             HHHHHHHHHHHCT----HHHHHHHHHTT-HHHHTTS--TTT--HHHHHHHHHHHHHHHHHHHT--SS---HCCCHHHHHH
T ss_pred             chHHHHHHHHcccCccCHHHHHHHHHhccccccccchhhHhhccCcHHHHHHHHHhCCcceeeCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCC
Q 046235          283 LIEKYFPEKLRW  294 (294)
Q Consensus       283 LidKY~P~~l~W  294 (294)
                      |||||||++|+|
T Consensus       242 LidKy~P~~l~W  253 (253)
T PF05153_consen  242 LIDKYFPGKLKW  253 (253)
T ss_dssp             HHHHHS-S-EEE
T ss_pred             HHHHHCCCcCCC
Confidence            999999999998

13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.

>KOG1573 consensus Aldehyde reductase [General function prediction only]	Back alignment and domain information

>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein	Back alignment and domain information

>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>TIGR00277 HDIG uncharacterized domain HDIG	Back alignment and domain information

>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []	Back alignment and domain information

>TIGR00488 putative HD superfamily hydrolase of NAD metabolism	Back alignment and domain information

>COG4341 Predicted HD phosphohydrolase [General function prediction only]	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity	Back alignment and domain information

>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00295 conserved hypothetical protein TIGR00295	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		294
2huo_A		289	Crystal Structure Of Mouse Myo-Inositol Oxygenase I		5e-67
2ibn_A		246	Crystal Structure Of Human Myo-Inositol Oxygenase (		9e-57
2ibn_B		240	Crystal Structure Of Human Myo-Inositol Oxygenase (		8e-55

>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In Complex With Substrate Length = 289

Back alignment and structure

Iteration: 1

Score = 251 bits (640), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 125/271 (46%), Positives = 172/271 (63%), Gaps = 5/271 (1%) Query: 25 PETNSFGQTFRDYGVESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECC 84 PE +FR+Y V Y+ H +QT DFV R R +YG + +M+I E Sbjct: 23 PEMAKSKDSFRNY-TSGPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAV 81 Query: 85 ELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGEL 144 +L++ VDESDPD+D P H QTAE IRK +P++DW HL GL+HDLGK++ +GE Sbjct: 82 GMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL--WGE- 138 Query: 145 PQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGH 203 PQWAVVGDTFPVGC S+V F++NPD +P ++ + G Y GL+NV MSWGH Sbjct: 139 PQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGH 198 Query: 204 DDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDL 263 D+Y+Y + K NK +LPS ++IR+HSFY H Y+ L +++D++ L W++ FNK+DL Sbjct: 199 DEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFDL 258 Query: 264 YSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 294 Y+K DVE ++PYY LI+KY P L W Sbjct: 259 YTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289

PyMOL of 2huo

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		294
2huo_A		289	Inositol oxygenase; protein-substrate complex, HD	1e-123
2ibn_A		250	Inositol oxygenase; reductase, DIIRON, structural	1e-122
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A* Length = 289	Back alignment and structure

 Score =  354 bits (908), Expect = e-123
 Identities = 123/273 (45%), Positives = 169/273 (61%), Gaps = 5/273 (1%)

Query: 23  TVPETNSFGQTFRDYGVESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWE 82
             PE      +FR+Y         V   Y+  H +QT DFV R R +YG  +  +M+I E
Sbjct: 21  VDPEMAKSKDSFRNYT-SGPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIME 79

Query: 83  CCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFG 142
              +L++ VDESDPD+D P   H  QTAE IRK +P++DW HL GL+HDLGK++      
Sbjct: 80  AVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMA---LW 136

Query: 143 ELPQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSW 201
             PQWAVVGDTFPVGC    S+V     F++NPD  +P ++ + G Y    GL+NV MSW
Sbjct: 137 GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSW 196

Query: 202 GHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKY 261
           GHD+Y+Y + K NK +LPS   ++IR+HSFY  H    Y+ L +++D++ L W++ FNK+
Sbjct: 197 GHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKF 256

Query: 262 DLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 294
           DLY+K     DVE ++PYY  LI+KY P  L W
Sbjct: 257 DLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289

PyMOL of 2huo

>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4 Length = 250	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		294
2huo_A		289	Inositol oxygenase; protein-substrate complex, HD	100.0
2ibn_A		250	Inositol oxygenase; reductase, DIIRON, structural	100.0
3ccg_A		190	HD superfamily hydrolase; NP_347894.1, HD domain,	93.16
2o08_A		188	BH1327 protein; putative HD superfamily hydrolase,	93.14
2ogi_A		196	Hypothetical protein SAG1661; structural genomics,	92.58
3hc1_A		305	Uncharacterized HDOD domain protein; HDOD domain p	91.68
3ljx_A		288	MMOQ response regulator; structural genomics, PSI-	90.96
3i7a_A		281	Putative metal-dependent phosphohydrolase; YP_9268	89.16
2qgs_A		225	Protein Se1688; alpha-helical protein, structural	85.4
3m1t_A		275	Putative phosphohydrolase; structural genomics, jo	83.53
3djb_A		223	Hydrolase, HD family; all alpha-helical protein.,	82.15

>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*	Back alignment and structure

Probab=100.00  E-value=3.3e-147  Score=1019.43  Aligned_cols=274  Identities=45%  Similarity=0.849  Sum_probs=252.4

Q ss_pred             ecCCCccCCCCCC----ccccccCCccccchhhHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHhhh
Q 046235           16 QDGGEGFTVPETN----SFGQTFRDYGVESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFV   91 (294)
Q Consensus        16 ~d~~~~f~~p~~~----~~~~~fR~Y~~~~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~Lv   91 (294)
                      +|+++ |..|+.+    +++++||||+. +.+++||++|||+||++|||+||++||++|++++|++|||||||++||+||
T Consensus        11 ~d~~~-~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~Lv   88 (289)
T 2huo_A           11 PDPSL-VYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLV   88 (289)
T ss_dssp             ----------------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCC
T ss_pred             CCccc-eeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhc
Confidence            78875 5667666    77889999997 557789999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchhcccCCCCCCCceeecCceeeecccCCCccccc-cc
Q 046235           92 DESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHK-YF  170 (294)
Q Consensus        92 DeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e-~F  170 (294)
                      ||||||+|+|||+||||||||||+|||..||||||||||||||||++   +++|||+||||||||||+|+++|||++ +|
T Consensus        89 DeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~---~~epQW~vvGDTfpVGC~f~~~iv~~e~~F  165 (289)
T 2huo_A           89 DESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTF  165 (289)
T ss_dssp             CSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG---GTCCGGGTSSCCCBSSSCCCTTSTTTTTSC
T ss_pred             CCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh---cCCCceeeecCcceeccccccccccchhhc
Confidence            99999999999999999999999997777999999999999999987   499999999999999999999999999 99


Q ss_pred             ccCCCCCCccCCcCCCccCCCCCccccccccCcchHHHHHHHhCCCCCCchhhhhhhhccccccccccccccccChhhHH
Q 046235          171 KENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIE  250 (294)
Q Consensus       171 ~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~  250 (294)
                      ++|||.+||+||||||||+||||||||+||||||||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+
T Consensus       166 ~~NpD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~~L~ne~D~~  245 (289)
T 2huo_A          166 QDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLD  245 (289)
T ss_dssp             TTCGGGGSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHHHHTSSCCTTTCCHHHHH
T ss_pred             cCCCCCCCccccccCCcccCCCCccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCcccccccHhhhcChhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCccccccCCCCCChhhhhhhhHHHHHHHcCCCCCC
Q 046235          251 NLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW  294 (294)
Q Consensus       251 ~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~~LidKY~P~~l~W  294 (294)
                      ||+||++||||||||||+++||||+|||||++|||||||++|+|
T Consensus       246 ~l~wv~~Fn~yDLYSKs~~~pdve~lkpYY~~LidKY~P~~l~W  289 (289)
T 2huo_A          246 MLPWVQEFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW  289 (289)
T ss_dssp             HHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHSCSCEEC
T ss_pred             HHHHHHHhCcccccccCCCCCCHHHHHHHHHHHHHHHCCcccCC
Confidence            99999999999999999999999999999999999999999999

PyMOL of 2huo

>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4	Back alignment and structure

>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}	Back alignment and structure

>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}	Back alignment and structure

>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A	Back alignment and structure

>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}	Back alignment and structure

>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1	Back alignment and structure

>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0	Back alignment and structure

>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		294
d2ibna1		249	a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {	1e-134

>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human (Homo sapiens) [TaxId: 9606]} Length = 249	Back information, alignment and structure


class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: MioX-like
domain: Myo-inositol oxygenase MioX
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  378 bits (973), Expect = e-134
 Identities = 121/249 (48%), Positives = 162/249 (65%), Gaps = 4/249 (1%)

Query: 47  VEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHL 106
           V   Y+  H +QT DFV+    ++G  +  +M++ E  +LL+  VDESDPD+D P   H 
Sbjct: 4   VFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHA 63

Query: 107 LQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVH 166
            QTAE IRK +P++DW HL GL+HDLGKVL    FGE PQWAVVGDTFPVGC    S+V 
Sbjct: 64  FQTAEGIRKAHPDKDWFHLVGLLHDLGKVLAL--FGE-PQWAVVGDTFPVGCRPQASVVF 120

Query: 167 -HKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFI 225
               F++NPD  +P ++ + G Y    GLD V MSWGHD+YMY V K NK +LP    ++
Sbjct: 121 CDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAFYM 180

Query: 226 IRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIE 285
           IR+HSFY  H    Y+ L +++D+  L W++ FNK+DLY+K     DV+K++PYY  LI+
Sbjct: 181 IRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGLID 240

Query: 286 KYFPEKLRW 294
           KY P  L W
Sbjct: 241 KYCPGILSW 249

PyMOL of d2ibna1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		294
d2ibna1		249	Myo-inositol oxygenase MioX {Human (Homo sapiens)	100.0

>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: MioX-like
domain: Myo-inositol oxygenase MioX
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-139  Score=947.20  Aligned_cols=247  Identities=48%  Similarity=0.913  Sum_probs=235.4

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchh
Q 046235           45 KGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLH  124 (294)
Q Consensus        45 ~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~q  124 (294)
                      +||++|||+||++||||||++||++|+++++++||||||+++||+|||+||||+|+|||+||||||||||++||+|||||
T Consensus         2 drV~~~Y~~~h~~QT~dfv~~~~~~~~~~~~~~mti~eale~Ln~lvD~SDPD~~lpn~~H~~QTAE~iR~~~~~~dW~q   81 (249)
T d2ibna1           2 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH   81 (249)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCCcceeEHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhCCCcchHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccchhcccCCCCCCCceeecCceeeecccCCCccccc-ccccCCCCCCccCCcCCCccCCCCCccccccccCc
Q 046235          125 LTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHK-YFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGH  203 (294)
Q Consensus       125 LtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e-~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGH  203 (294)
                      ||||||||||||++  | |+|||+||||||||||+|+++|||++ +|++|||..||+||||+|||+||||||||+|||||
T Consensus        82 L~GLiHDLGKvl~~--~-ge~qW~vVGDTf~vGC~~~~~iv~~e~~f~~NpD~~~~~yntk~GiY~~~CGLdNv~~SWGH  158 (249)
T d2ibna1          82 LVGLLHDLGKVLAL--F-GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH  158 (249)
T ss_dssp             HHHHHTTGGGHHHH--T-TCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred             hhhhhhhhHHHhHh--c-CCCceeeecccceecccCCccccccccccccCccccCCccCCcccccCCCCCccceeeeccc
Confidence            99999999999998  6 79999999999999999999999998 69999999999999999999999999999999999


Q ss_pred             chHHHHHHHhCCCCCCchhhhhhhhccccccccccccccccChhhHHHHHHHHHcCCccccccCCCCCChhhhhhhhHHH
Q 046235          204 DDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSL  283 (294)
Q Consensus       204 DEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~~L  283 (294)
                      |||||+|||+|+++||+|||+|||||||||||++|+|+||||++|.+||+||++|||||||||+++.||+++|||||++|
T Consensus       159 DEYLY~Vlk~N~~~LP~eal~mIRyHSfYpwH~~~~Y~~l~n~~D~~ml~~V~~FN~yDLYSK~d~~pd~~~lkpYY~~L  238 (249)
T d2ibna1         159 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGL  238 (249)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHHHHTTCHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCCCcCCHHHHHHHHhhccccccCcchHHHHhChhHHHHHHHHHhcCccccccCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCC
Q 046235          284 IEKYFPEKLRW  294 (294)
Q Consensus       284 idKY~P~~l~W  294 (294)
                      ||||||++|+|
T Consensus       239 idKY~pg~L~W  249 (249)
T d2ibna1         239 IDKYCPGILSW  249 (249)
T ss_dssp             HHHHSCSCEEC
T ss_pred             HHHHCCCCcCC
Confidence            99999999999

PyMOL of d2ibna1