Citrus Sinensis ID: 046281

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLDI
ccccccccEEcHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEcccccccHHHHHHccccccccEEEEEEEEEcccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccc
ccccccccEEcHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccccccHHHHHccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHc
mansssgmavhdeCKLKFLELKAKRSYRFIVFKIEEKIQQVTVEklgepnesyedftaslpadecryavydfdfttdencqkskiffvawspdtsriRSKMLYASSKDRFRRELDGVQVelqatdpsemsldi
mansssgmavhdecKLKFLELKAKRSYRFIVFKIEEKIQQVTveklgepneSYEDFTASLPADECRYAVYDFDFTTDENCQKSKIffvawspdtsriRSKMLYasskdrfrreLDGVqvelqatdpsemsldi
MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLDI
**********HDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRI************************************
***SSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLDI
**********HDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATD********
*******MAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMS***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query133 2.2.26 [Sep-21-2011]
P30175139 Actin-depolymerizing fact N/A no 1.0 0.956 0.842 3e-65
Q6EUH7139 Actin-depolymerizing fact yes no 1.0 0.956 0.834 1e-64
Q9LQ81140 Actin-depolymerizing fact yes no 1.0 0.95 0.842 8e-64
Q570Y6140 Actin-depolymerizing fact no no 1.0 0.95 0.819 1e-63
Q9FVI1143 Actin-depolymerizing fact N/A no 1.0 0.930 0.812 2e-63
Q7XSN9139 Actin-depolymerizing fact no no 1.0 0.956 0.789 5e-62
Q9FVI2139 Actin-depolymerizing fact N/A no 1.0 0.956 0.781 9e-62
Q9ZSK3139 Actin-depolymerizing fact no no 1.0 0.956 0.774 6e-61
Q67ZM4137 Actin-depolymerizing fact no no 0.984 0.956 0.796 1e-60
Q39250139 Actin-depolymerizing fact no no 1.0 0.956 0.751 5e-60
>sp|P30175|ADF_LILLO Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1 Back     alignment and function desciption
 Score =  246 bits (628), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 112/133 (84%), Positives = 128/133 (96%)

Query: 1   MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASL 60
           MANSSSGMAV DECKLKF+ELKAKR++RFIVFKIEEK+QQVTVE+LG+PNESY+DFT  L
Sbjct: 1   MANSSSGMAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECL 60

Query: 61  PADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVE 120
           P +ECRYAV+DFDF TDENCQKSKIFF++WSPDTSR+RSKMLYAS+KDRF+RELDG+QVE
Sbjct: 61  PPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSLDI 133
           LQATDPSEMS+DI
Sbjct: 121 LQATDPSEMSMDI 133
Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers.
Lilium longiflorum (taxid: 4690)
>sp|Q6EUH7|ADF1_ORYSJ Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQ81|ADF10_ARATH Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1 Back     alignment and function description
>sp|Q570Y6|ADF8_ARATH Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2 Back     alignment and function description
>sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSN9|ADF6_ORYSJ Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2 Back     alignment and function description
>sp|Q9FVI2|ADF1_PETHY Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSK3|ADF4_ARATH Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2 Back     alignment and function description
>sp|Q67ZM4|ADF7_ARATH Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1 Back     alignment and function description
>sp|Q39250|ADF1_ARATH Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query133
255537425139 actin depolymerizing factor, putative [R 1.0 0.956 0.924 4e-67
297745256 256 unnamed protein product [Vitis vinifera] 1.0 0.519 0.879 4e-66
225454162139 PREDICTED: actin-depolymerizing factor 1 1.0 0.956 0.879 6e-66
224053929141 predicted protein [Populus trichocarpa] 0.992 0.936 0.893 2e-64
225470195 401 PREDICTED: uncharacterized protein LOC10 0.992 0.329 0.871 2e-64
225435040139 PREDICTED: actin-depolymerizing factor 2 1.0 0.956 0.842 3e-64
298362843139 actin-depolymerizing factor [Hevea brasi 1.0 0.956 0.834 5e-64
89276295139 actin depolymerizing factor 8 [Gossypium 1.0 0.956 0.842 2e-63
297741474189 unnamed protein product [Vitis vinifera] 1.0 0.703 0.827 2e-63
231509139 RecName: Full=Actin-depolymerizing facto 1.0 0.956 0.842 2e-63
>gi|255537425|ref|XP_002509779.1| actin depolymerizing factor, putative [Ricinus communis] gi|223549678|gb|EEF51166.1| actin depolymerizing factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 123/133 (92%), Positives = 129/133 (96%)

Query: 1   MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASL 60
           MANSSSGMAV+DECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLG+P ESYEDFTASL
Sbjct: 1   MANSSSGMAVNDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGQPQESYEDFTASL 60

Query: 61  PADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVE 120
           PA+ECRYAVYD DFTT+EN QKSKIFFVAWSPDTS++RSKMLYASSKDRFRRELDGVQVE
Sbjct: 61  PANECRYAVYDLDFTTNENVQKSKIFFVAWSPDTSKVRSKMLYASSKDRFRRELDGVQVE 120

Query: 121 LQATDPSEMSLDI 133
           LQATDPSEMS DI
Sbjct: 121 LQATDPSEMSFDI 133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297745256|emb|CBI40336.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225454162|ref|XP_002271495.1| PREDICTED: actin-depolymerizing factor 10 [Vitis vinifera] gi|147779701|emb|CAN73839.1| hypothetical protein VITISV_012391 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224053929|ref|XP_002298043.1| predicted protein [Populus trichocarpa] gi|222845301|gb|EEE82848.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225470195|ref|XP_002268512.1| PREDICTED: uncharacterized protein LOC100242054 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225435040|ref|XP_002284292.1| PREDICTED: actin-depolymerizing factor 2-like isoform 1 [Vitis vinifera] gi|359478986|ref|XP_003632201.1| PREDICTED: actin-depolymerizing factor 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|298362843|gb|ADI78873.1| actin-depolymerizing factor [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|89276295|gb|ABD66504.1| actin depolymerizing factor 8 [Gossypium hirsutum] gi|119388970|gb|AAY88048.2| actin depolymerizing factor [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|297741474|emb|CBI32606.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|231509|sp|P30175.1|ADF_LILLO RecName: Full=Actin-depolymerizing factor; Short=ADF gi|22748|emb|CAA78483.1| actin depolymerizing factor [Lilium longiflorum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query133
TAIR|locus:2198175140 ADF11 "actin depolymerizing fa 1.0 0.95 0.842 9.3e-59
TAIR|locus:2127073140 ADF8 "actin depolymerizing fac 1.0 0.95 0.819 1.5e-58
TAIR|locus:2131879137 ADF7 "actin depolymerizing fac 0.984 0.956 0.796 1.8e-55
TAIR|locus:2168063139 ADF4 "actin depolymerizing fac 1.0 0.956 0.774 2.9e-55
TAIR|locus:2077107137 ADF2 "actin depolymerizing fac 0.984 0.956 0.759 2.1e-54
TAIR|locus:2077122150 ADF1 "actin depolymerizing fac 0.992 0.88 0.75 5.5e-54
TAIR|locus:2156727137 ADF10 "actin depolymerizing fa 0.984 0.956 0.789 1.9e-53
TAIR|locus:2168052139 ADF3 "actin depolymerizing fac 1.0 0.956 0.714 9.2e-52
TAIR|locus:2042546146 ADF6 "actin depolymerizing fac 0.984 0.897 0.618 2.5e-42
TAIR|locus:2059861143 ADF5 "actin depolymerizing fac 0.977 0.909 0.6 1.2e-40
TAIR|locus:2198175 ADF11 "actin depolymerizing factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 112/133 (84%), Positives = 124/133 (93%)

Query:     1 MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASL 60
             MANS+SGM V DECKLKFLELKAKR+YRFIVFKI+EK QQV ++KLG P E+YEDFT S+
Sbjct:     1 MANSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSI 60

Query:    61 PADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVE 120
             P DECRYAVYD+DFTT ENCQKSKIFF+AWSPDTSR+RSKMLYASSKDRF+RELDG+QVE
Sbjct:    61 PEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVE 120

Query:   121 LQATDPSEMSLDI 133
             LQATDPSEMSLDI
Sbjct:   121 LQATDPSEMSLDI 133
GO:0003779 "actin binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0010054 "trichoblast differentiation" evidence=RCA
TAIR|locus:2127073 ADF8 "actin depolymerizing factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131879 ADF7 "actin depolymerizing factor 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168063 ADF4 "actin depolymerizing factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077107 ADF2 "actin depolymerizing factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077122 ADF1 "actin depolymerizing factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156727 ADF10 "actin depolymerizing factor 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168052 ADF3 "actin depolymerizing factor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042546 ADF6 "actin depolymerizing factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059861 ADF5 "actin depolymerizing factor 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CM06COFI_CRYNJNo assigned EC number0.40310.95480.9202yesno
Q41764ADF3_MAIZENo assigned EC number0.57570.99240.9496N/Ano
Q9FVI2ADF1_PETHYNo assigned EC number0.78191.00.9568N/Ano
Q9FVI1ADF2_PETHYNo assigned EC number0.81201.00.9300N/Ano
P0DJ27COFB_DICDINo assigned EC number0.4320.93230.9051yesno
P46251ADF1_MAIZENo assigned EC number0.74431.00.9568N/Ano
Q6C0Y0COFI_YARLINo assigned EC number0.44610.96240.8366yesno
Q9HF97COFI_ZYGRONo assigned EC number0.43070.96240.8951yesno
Q9ZSK4ADF3_ARATHNo assigned EC number0.71421.00.9568nono
Q03048COFI_YEASTNo assigned EC number0.44610.96240.8951yesno
Q0DLA3ADF7_ORYSJNo assigned EC number0.75931.00.9568nono
Q9ZSK3ADF4_ARATHNo assigned EC number0.77441.00.9568nono
Q759P0COFI_ASHGONo assigned EC number0.43750.94730.8811yesno
Q6EUH7ADF1_ORYSJNo assigned EC number0.83451.00.9568yesno
Q39250ADF1_ARATHNo assigned EC number0.75181.00.9568nono
Q39251ADF2_ARATHNo assigned EC number0.75930.98490.9562nono
Q9LQ81ADF10_ARATHNo assigned EC number0.84211.00.95yesno
Q8LFH6ADF12_ARATHNo assigned EC number0.78940.98490.9562nono
Q8ID92CADF2_PLAF7No assigned EC number0.3680.88720.8251yesno
P30175ADF_LILLONo assigned EC number0.84211.00.9568N/Ano
P30174ADF_BRANANo assigned EC number0.73170.90220.9523N/Ano
P45594CADF_DROMENo assigned EC number0.37310.93980.8445yesno
Q8H2P8ADF9_ORYSJNo assigned EC number0.75931.00.9568nono
P0DJ26COFA_DICDINo assigned EC number0.4320.93230.9051yesno
Q67ZM4ADF7_ARATHNo assigned EC number0.79690.98490.9562nono
Q4I963COFI_GIBZENo assigned EC number0.36170.96240.8366yesno
P78929COFI_SCHPONo assigned EC number0.43300.93980.9124yesno
Q6BWX4COFI_DEBHANo assigned EC number0.44530.94730.8811yesno
Q43694ADF2_MAIZENo assigned EC number0.76691.00.9568N/Ano
Q6CQ22COFI_KLULANo assigned EC number0.42960.94730.8811yesno
Q7XSN9ADF6_ORYSJNo assigned EC number0.78941.00.9568nono
Q570Y6ADF8_ARATHNo assigned EC number0.81951.00.95nono
Q6FV81COFI_CANGANo assigned EC number0.43750.94730.8811yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query133
cd11286133 cd11286, ADF_cofilin_like, Cofilin, Destrin, and r 2e-64
PLN03216141 PLN03216, PLN03216, actin depolymerizing factor; P 1e-62
smart00102127 smart00102, ADF, Actin depolymerisation factor/cof 1e-51
pfam00241127 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type a 5e-48
PTZ00152122 PTZ00152, PTZ00152, cofilin/actin-depolymerizing f 2e-19
cd0001397 cd00013, ADF_gelsolin, Actin depolymerization fact 1e-16
cd11285139 cd11285, ADF_Twf-N_like, N-terminal ADF domain of 4e-14
cd11283122 cd11283, ADF_GMF-beta_like, ADF-homology domain of 1e-12
cd11284132 cd11284, ADF_Twf-C_like, C-terminal ADF domain of 1e-08
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin depolymerizing factors Back     alignment and domain information 
 Score =  192 bits (489), Expect = 2e-64
 Identities = 64/128 (50%), Positives = 97/128 (75%)

Query: 6   SGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADEC 65
           SG+ V DEC   F ELK K+ +++I+FKI +  +++ VEK+GE + SY+DF   LP +EC
Sbjct: 1   SGVKVSDECITAFNELKLKKKHKYIIFKISDDKKEIVVEKVGERDASYDDFLEKLPENEC 60

Query: 66  RYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATD 125
           RYAVYDF++ T +  ++SK+ F++W PDT+ I+SKMLYASSKD  +++L+G++ E+QATD
Sbjct: 61  RYAVYDFEYETKDGGKRSKLVFISWCPDTAPIKSKMLYASSKDALKKKLNGIKKEIQATD 120

Query: 126 PSEMSLDI 133
            SE+S + 
Sbjct: 121 LSELSEEE 128

Actin depolymerization factor/cofilin-like domains (ADF domains) are present in a family of essential eukaryotic actin regulatory proteins. These proteins enhance the turnover rate of actin, and interact with actin monomers (G-actin) as well as actin filaments (F-actin), typically with a preference for ADP-G-actin subunits. The basic function of cofilin is to promote disassembly of aged actin filaments. Vertebrates have three isoforms of cofilin: cofilin-1 (Cfl1, non-muscle cofilin), cofilin-2 (muscle cofilin), and ADF (destrin). When bound to actin monomers, cofilins inhibit their spontaneous exchange of nucleotides. The cooperative binding to (aged) ADP-F-actin induces a local change in the actin filament structure and further promotes aging. Length = 133
>gnl|CDD|178755 PLN03216, PLN03216, actin depolymerizing factor; Provisional Back     alignment and domain information
>gnl|CDD|214516 smart00102, ADF, Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>gnl|CDD|143992 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type actin-binding protein Back     alignment and domain information
>gnl|CDD|173441 PTZ00152, PTZ00152, cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and gelsolin-like domains Back     alignment and domain information
>gnl|CDD|200441 cd11285, ADF_Twf-N_like, N-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information
>gnl|CDD|200439 cd11283, ADF_GMF-beta_like, ADF-homology domain of glia maturation factor beta and related proteins Back     alignment and domain information
>gnl|CDD|200440 cd11284, ADF_Twf-C_like, C-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 133
PLN03216141 actin depolymerizing factor; Provisional 100.0
cd00013132 ADF Actin depolymerisation factor/cofilin -like do 100.0
KOG1735146 consensus Actin depolymerizing factor [Cytoskeleto 100.0
PF00241127 Cofilin_ADF: Cofilin/tropomyosin-type actin-bindin 100.0
smart00102127 ADF Actin depolymerisation factor/cofilin -like do 100.0
PTZ00152122 cofilin/actin-depolymerizing factor 1-like protein 100.0
KOG1736143 consensus Glia maturation factor beta [Extracellul 99.95
KOG1747 342 consensus Protein tyrosine kinase 9/actin monomer- 99.93
KOG1747342 consensus Protein tyrosine kinase 9/actin monomer- 99.92
KOG3655 484 consensus Drebrins and related actin binding prote 99.69
>PLN03216 actin depolymerizing factor; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-46  Score=259.17  Aligned_cols=130  Identities=65%  Similarity=1.101  Sum_probs=122.8

Q ss_pred             CCCcCCccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecCCCCcc
Q 046281            3 NSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQK   82 (133)
Q Consensus         3 ~~~SGi~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~~~~~~   82 (133)
                      |++|||+++++|.++|++|+.++.+|||+|+|+.++++|+|++++..+.+|++|++.||+++|||++|||++.+.+|+.+
T Consensus         5 m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~   84 (141)
T PLN03216          5 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK   84 (141)
T ss_pred             ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Confidence            35799999999999999999887789999999998889999887655778999999999999999999999999999999


Q ss_pred             ccEEEEEEcCCCCCcchhhhhHHhHHHHHhhcCCeeEEEEeCCCCCCccC
Q 046281           83 SKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLD  132 (133)
Q Consensus        83 ~~~vfI~w~Pd~a~vk~kMlYassk~~l~~~l~g~~~~i~~~d~~dl~~~  132 (133)
                      ++++||+|||++|++|.||+|||+|++|++.|+|++++|||+|.+||+++
T Consensus        85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~  134 (141)
T PLN03216         85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFD  134 (141)
T ss_pred             cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHH
Confidence            99999999999999999999999999999999999999999999999876

>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments Back     alignment and domain information
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton] Back     alignment and domain information
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma Back     alignment and domain information
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>KOG1736 consensus Glia maturation factor beta [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query133
1f7s_A139 Crystal Structure Of Adf1 From Arabidopsis Thaliana 5e-61
1ahq_A137 Recombinant Actophorin Length = 137 4e-33
1cnu_A137 Phosphorylated Actophorin From Acantamoeba Polyphag 1e-32
1cfy_A143 Yeast Cofilin, Monoclinic Crystal Form Length = 143 4e-27
2i2q_A137 Fission Yeast Cofilin Length = 137 5e-26
2l72_A139 Solution Structure And Dynamics Of Adf From Toxopla 9e-20
2xfa_A148 Crystal Structure Of Plasmodium Berghei Actin Depol 6e-16
1ak6_A174 Destrin, Nmr, Minimized Average Structure Length = 1e-15
1q8g_A166 Nmr Structure Of Human Cofilin Length = 166 9e-15
2lj8_A144 Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA B 1e-14
1tvj_A166 Solution Structure Of Chick Cofilin Length = 166 1e-14
2kvk_A144 Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISH 2e-10
1m4j_A142 Crystal Structure Of The N-Terminal Adf-H Domain Of 1e-08
2vac_A134 Structure Of N-Terminal Actin Depolymerizing Factor 6e-08
3q2b_A124 Crystal Structure Of An Actin Depolymerizing Factor 8e-07
2xf1_A124 Crystal Structure Of Plasmodium Falciparum Actin De 1e-05
3l50_A136 The Crystal Structure Of Human Glia Maturation Fact 9e-05
1wfs_A151 Solution Structure Of Glia Maturation Factor-Gamma 1e-04
1vkk_A154 Crystal Structure Of Glia Maturation Factor-Gamma ( 1e-04
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana Length = 139 Back     alignment and structure 
Iteration: 1

 Score =  229 bits (583), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 123/133 (92%)
Query: 1   MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASL 60
           MAN++SGMAVHD+CKL+FLELKAKR++RFIV+KIEEK +QV VEK+G+P ++YE+F A L
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60
Query: 61  PADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVE 120
           PADECRYA+YDFDF T ENCQKSKIFF+AW PD +++RSKM+YASSKDRF+RELDG+QVE
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120
Query: 121 LQATDPSEMSLDI 133
           LQATDP+EM LD+
Sbjct: 121 LQATDPTEMDLDV 133
>pdb|1AHQ|A Chain A, Recombinant Actophorin Length = 137 Back     alignment and structure
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga Length = 137 Back     alignment and structure
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form Length = 143 Back     alignment and structure
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin Length = 137 Back     alignment and structure
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma Gondii (Tgadf) Length = 139 Back     alignment and structure
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin Depolymerization Factor 2 Length = 148 Back     alignment and structure
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure Length = 174 Back     alignment and structure
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin Length = 166 Back     alignment and structure
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI Length = 144 Back     alignment and structure
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin Length = 166 Back     alignment and structure
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA DONOVANI Length = 144 Back     alignment and structure
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse Twinfilin Isoform-1 Length = 142 Back     alignment and structure
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor Homology (Adf-H) Domain Of Human Twinfilin-2 Length = 134 Back     alignment and structure
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor Length = 124 Back     alignment and structure
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor, Gamma (Gmfg) Length = 136 Back     alignment and structure
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From Mus Musculus Length = 151 Back     alignment and structure
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg) From Mus Musculus At 1.50 A Resolution Length = 154 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query133
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 5e-53
2xfa_A148 Actin depolymerization factor 2; actin binding pro 2e-47
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 4e-46
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 4e-45
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 5e-44
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 2e-43
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 4e-43
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 1e-41
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 1e-40
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 8e-40
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 2e-39
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 3e-39
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 8e-38
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 1e-36
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 3e-35
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 4e-35
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 8e-34
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 6e-25
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 7e-22
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 4e-18
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Length = 139 Back     alignment and structure
 Score =  162 bits (412), Expect = 5e-53
 Identities = 100/132 (75%), Positives = 122/132 (92%)

Query: 1   MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASL 60
           MAN++SGMAVHD+CKL+FLELKAKR++RFIV+KIEEK +QV VEK+G+P ++YE+F A L
Sbjct: 1   MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60

Query: 61  PADECRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVE 120
           PADECRYA+YDFDF T ENCQKSKIFF+AW PD +++RSKM+YASSKDRF+RELDG+QVE
Sbjct: 61  PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120

Query: 121 LQATDPSEMSLD 132
           LQATDP+EM LD
Sbjct: 121 LQATDPTEMDLD 132
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Length = 148 Back     alignment and structure
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Length = 137 Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Length = 137 Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Length = 143 Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Length = 124 Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Length = 139 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Length = 174 Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Length = 154 Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Length = 166 Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Length = 134 Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Length = 151 Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Length = 142 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Length = 135 Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Length = 164 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Length = 166 Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Length = 141 Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Length = 141 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query133
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 100.0
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 100.0
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 100.0
2xfa_A148 Actin depolymerization factor 2; actin binding pro 100.0
2kvk_A144 Actin severing and dynamics regulatory protein; AD 100.0
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 100.0
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 100.0
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 100.0
2lj8_A144 Cofilin/actin depolymerizing factor, putative; pro 100.0
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 100.0
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 100.0
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 100.0
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 100.0
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 100.0
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 100.0
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 100.0
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 100.0
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 100.0
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 100.0
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 100.0
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 100.0
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 100.0
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Back     alignment and structure
Probab=100.00  E-value=5.2e-46  Score=255.56  Aligned_cols=133  Identities=75%  Similarity=1.266  Sum_probs=118.9

Q ss_pred             CCCCCcCCccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecCCCC
Q 046281            1 MANSSSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENC   80 (133)
Q Consensus         1 ~~~~~SGi~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~~~~   80 (133)
                      |+||+|||.++++|+++|++|+.++.+|||+|+|+.++++|+|+++|+...+|++|.+.||+++|||++||+++++.+|+
T Consensus         1 ~~~~~sGi~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~   80 (139)
T 1f7s_A            1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENC   80 (139)
T ss_dssp             ----CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSC
T ss_pred             CCcCccCcEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccC
Confidence            78899999999999999999998767899999999988899999988666699999999999999999999999999999


Q ss_pred             ccccEEEEEEcCCCCCcchhhhhHHhHHHHHhhcCCeeEEEEeCCCCCCccCC
Q 046281           81 QKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSEMSLDI  133 (133)
Q Consensus        81 ~~~~~vfI~w~Pd~a~vk~kMlYassk~~l~~~l~g~~~~i~~~d~~dl~~~~  133 (133)
                      .+++++||+|||++|++|.||+|||+|++|++.|+|++++|+|++++||+++.
T Consensus        81 ~~~k~vfI~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~  133 (139)
T 1f7s_A           81 QKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDV  133 (139)
T ss_dssp             EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----
T ss_pred             cccCEEEEEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHH
Confidence            99999999999999999999999999999999999999999999999999863
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Back     alignment and structure
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani} Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Back     alignment and structure
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Back     alignment and structure
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei} Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 133
d1f7sa_124 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 5e-53
d1cnua_134 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 5e-46
d1ak7a_174 d.109.1.2 (A:) Destrin {Human and pig (Homo sapien 3e-44
d1cfya_133 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 4e-41
d1q8ga_166 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 3e-39
d1vkka_137 d.109.1.2 (A:) Glia maturation factor gamma, GMF-g 1e-37
d1m4ja_133 d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 1e-30
d1t3ya1130 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 ( 3e-28
d1hqz1_139 d.109.1.2 (1:) Cofilin-like domain of actin-bindin 2e-23
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Length = 124 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]

 Score =  161 bits (408), Expect = 5e-53
 Identities = 94/124 (75%), Positives = 115/124 (92%)

Query: 5   SSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADE 64
           +SGMAVHD+CKL+FLELKAKR++RFIV+KIEEK +QV VEK+G+P ++YE+F A LPADE
Sbjct: 1   ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADE 60

Query: 65  CRYAVYDFDFTTDENCQKSKIFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQAT 124
           CRYA+YDFDF T ENCQKSKIFF+AW PD +++RSKM+YASSKDRF+RELDG+QVELQAT
Sbjct: 61  CRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQAT 120

Query: 125 DPSE 128
           DP+E
Sbjct: 121 DPTE 124
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Length = 134 Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 133 Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133 Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query133
d1f7sa_124 Cofilin (actin depolymerizing factor, ADF) {Plant 100.0
d1cnua_134 Cofilin (actin depolymerizing factor, ADF) {Acanth 100.0
d1cfya_133 Cofilin (actin depolymerizing factor, ADF) {Baker' 100.0
d1q8ga_166 Cofilin (actin depolymerizing factor, ADF) {Human 100.0
d1ak7a_174 Destrin {Human and pig (Homo sapiens) and (Sus scr 100.0
d1vkka_137 Glia maturation factor gamma, GMF-gamma {Mouse (Mu 100.0
d1m4ja_133 Adf-H domain of twinfilin isoform-1 {Mouse (Mus mu 100.0
d1t3ya1130 Coactosin-like protein Cotl1 (Clp) {Human (Homo sa 99.98
d1hqz1_139 Cofilin-like domain of actin-binding protein abp1p 99.98
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]

Probab=100.00  E-value=2.5e-44  Score=241.32  Aligned_cols=124  Identities=76%  Similarity=1.282  Sum_probs=119.1

Q ss_pred             CcCCccCHHHHHHHHHhhcCCCceEEEEEEeCCceEEEEeecCCCCCChHHHHhcCCCCCceeEEEeeeeecCCCCcccc
Q 046281            5 SSGMAVHDECKLKFLELKAKRSYRFIVFKIEEKIQQVTVEKLGEPNESYEDFTASLPADECRYAVYDFDFTTDENCQKSK   84 (133)
Q Consensus         5 ~SGi~is~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~pry~~y~~~~~~~~~~~~~~   84 (133)
                      +|||+++|||+++|++|+.++++|||+|+|+.++++|+|+++++...+|++|++.||+++|||++|+|.+.+.+|+.+++
T Consensus         1 aSGi~v~de~~~~f~~lk~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~~ry~~~~~~~~~~~~~~~~k   80 (124)
T d1f7sa_           1 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSK   80 (124)
T ss_dssp             CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCEEEE
T ss_pred             CCCeEeCHHHHHHHHHHhcCCCceEEEEEEeCCCcEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEEEEecCCCCcccc
Confidence            58999999999999999988889999999999988999999887788999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCCcchhhhhHHhHHHHHhhcCCeeEEEEeCCCCC
Q 046281           85 IFFVAWSPDTSRIRSKMLYASSKDRFRRELDGVQVELQATDPSE  128 (133)
Q Consensus        85 ~vfI~w~Pd~a~vk~kMlYassk~~l~~~l~g~~~~i~~~d~~d  128 (133)
                      +|||+|||++||+|.||+|||+|++|++.|+|++++|||+|++|
T Consensus        81 ~vfI~w~Pd~a~vk~KMlyAssk~~l~~~l~gi~~~i~a~d~~E  124 (124)
T d1f7sa_          81 IFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE  124 (124)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC
T ss_pred             EEEEEECCCCCCHhHeeeeHhHHHHHHHHhcCccEEEEeCCCCC
Confidence            99999999999999999999999999999999999999999986
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure