Citrus Sinensis ID: 046285

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
VRELAEKEDEAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS
cHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccEEEEEccccHHHHHHHHHHcccc
cHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHcccccccEEEEEccccHHHHHHHHHHcccc
VRELAEKEDEAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTeitpksiavhhATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALglkgrsepyvteDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVaidgsatlidFHNLWLTHQYS
vrelaekedeagvfkmLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS
VRELAEKEDEAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS
***********GVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAI*****DMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTH***
*RE************MLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKA***************LKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTH***
*********EAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS
VRELAEKEDEAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTH***
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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VRELAEKEDEAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query198 2.2.26 [Sep-21-2011]
Q84R21 653 DUF21 domain-containing p yes no 1.0 0.303 0.888 1e-98
Q9LK65 661 Putative DUF21 domain-con no no 1.0 0.299 0.873 8e-98
P37908 428 UPF0053 inner membrane pr N/A no 0.893 0.413 0.288 7e-14
P74078 346 UPF0053 protein sll1254 O N/A no 0.974 0.557 0.246 6e-13
Q57017 420 UPF0053 protein HI_0107 O yes no 0.787 0.371 0.291 2e-12
P67131 435 UPF0053 protein Mb2387c O yes no 0.893 0.406 0.255 3e-12
P67130 435 UPF0053 protein Rv2366c/M yes no 0.893 0.406 0.255 3e-12
P74409 448 UPF0053 protein sll0260 O N/A no 0.828 0.366 0.252 7e-09
O07585 444 UPF0053 protein YhdP OS=B yes no 0.888 0.396 0.234 2e-08
P54428 434 UPF0053 protein YrkA OS=B no no 0.545 0.248 0.281 4e-08
>sp|Q84R21|Y1559_ARATH DUF21 domain-containing protein At1g55930, chloroplastic OS=Arabidopsis thaliana GN=CBSDUFCH2 PE=2 SV=2 Back     alignment and function desciption
 Score =  358 bits (919), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 176/198 (88%), Positives = 188/198 (94%)

Query: 1   VRELAEKEDEAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAAT 60
           VRELAEKE E GVF+MLR+DVTRFLTTILIGTTVVNI ATALVT+AATAIFGEAGVSAAT
Sbjct: 185 VRELAEKEPENGVFRMLRSDVTRFLTTILIGTTVVNIAATALVTKAATAIFGEAGVSAAT 244

Query: 61  GVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALG 120
           GVMTVAILLLTEITPKS+AVH+A +V R VVRPVAWLSLILYPVGRV T++SMG+LK LG
Sbjct: 245 GVMTVAILLLTEITPKSVAVHNAQEVARIVVRPVAWLSLILYPVGRVVTYLSMGILKILG 304

Query: 121 LKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAID 180
           LKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAID
Sbjct: 305 LKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAID 364

Query: 181 GSATLIDFHNLWLTHQYS 198
           GS +L+DFHN W+THQYS
Sbjct: 365 GSGSLVDFHNFWVTHQYS 382

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LK65|Y3307_ARATH Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana GN=CBSDUFCH1 PE=4 SV=1 Back     alignment and function description
>sp|P37908|YFJD_ECOLI UPF0053 inner membrane protein YfjD OS=Escherichia coli (strain K12) GN=yfjD PE=1 SV=5 Back     alignment and function description
>sp|P74078|Y1254_SYNY3 UPF0053 protein sll1254 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1254 PE=3 SV=1 Back     alignment and function description
>sp|Q57017|Y107_HAEIN UPF0053 protein HI_0107 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0107 PE=1 SV=2 Back     alignment and function description
>sp|P67131|Y2387_MYCBO UPF0053 protein Mb2387c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2387c PE=3 SV=1 Back     alignment and function description
>sp|P67130|Y2366_MYCTU UPF0053 protein Rv2366c/MT2435 OS=Mycobacterium tuberculosis GN=Rv2366c PE=3 SV=1 Back     alignment and function description
>sp|P74409|Y260_SYNY3 UPF0053 protein sll0260 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0260 PE=3 SV=1 Back     alignment and function description
>sp|O07585|YHDP_BACSU UPF0053 protein YhdP OS=Bacillus subtilis (strain 168) GN=yhdP PE=3 SV=1 Back     alignment and function description
>sp|P54428|YRKA_BACSU UPF0053 protein YrkA OS=Bacillus subtilis (strain 168) GN=yrkA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
255584625 676 Magnesium and cobalt efflux protein corC 1.0 0.292 0.898 2e-98
356501616 666 PREDICTED: DUF21 domain-containing prote 1.0 0.297 0.893 3e-98
356553522 665 PREDICTED: DUF21 domain-containing prote 1.0 0.297 0.888 7e-98
224061166 446 predicted protein [Populus trichocarpa] 1.0 0.443 0.904 7e-98
297737546 537 unnamed protein product [Vitis vinifera] 1.0 0.368 0.898 2e-97
8778312 930 F14J16.20 [Arabidopsis thaliana] 1.0 0.212 0.888 2e-97
225460751 669 PREDICTED: DUF21 domain-containing prote 1.0 0.295 0.898 3e-97
42562776 653 CBS and transporter associated domain-co 1.0 0.303 0.888 7e-97
218193238 502 hypothetical protein OsI_12456 [Oryza sa 1.0 0.394 0.888 2e-96
29824374 653 unknown protein [Arabidopsis thaliana] g 0.994 0.301 0.888 2e-96
>gi|255584625|ref|XP_002533036.1| Magnesium and cobalt efflux protein corC, putative [Ricinus communis] gi|223527174|gb|EEF29344.1| Magnesium and cobalt efflux protein corC, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 190/198 (95%)

Query: 1   VRELAEKEDEAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAAT 60
           VRELAEKE + GVFKMLR D+TRFLTTILIGTTVVNIGATALVT+AATAIFGEAGV+AAT
Sbjct: 195 VRELAEKEPDDGVFKMLRGDITRFLTTILIGTTVVNIGATALVTDAATAIFGEAGVTAAT 254

Query: 61  GVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALG 120
           GVMTVAILLLTEITPKSIAVH+AT+V RFVVRPVAWLSL+LYPVGR+ T++SMGMLK LG
Sbjct: 255 GVMTVAILLLTEITPKSIAVHNATEVARFVVRPVAWLSLVLYPVGRIVTYLSMGMLKMLG 314

Query: 121 LKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAID 180
           LKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAID
Sbjct: 315 LKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAID 374

Query: 181 GSATLIDFHNLWLTHQYS 198
            SATL+DFH LW+THQYS
Sbjct: 375 ASATLVDFHQLWVTHQYS 392

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356501616|ref|XP_003519620.1| PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356553522|ref|XP_003545104.1| PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224061166|ref|XP_002300361.1| predicted protein [Populus trichocarpa] gi|222847619|gb|EEE85166.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297737546|emb|CBI26747.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|8778312|gb|AAF79321.1|AC002304_14 F14J16.20 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225460751|ref|XP_002273722.1| PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|42562776|ref|NP_175989.2| CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gi|342179478|sp|Q84R21.2|Y1559_ARATH RecName: Full=DUF21 domain-containing protein At1g55930, chloroplastic; AltName: Full=CBS domain-containing protein CBSDUFCH2; Flags: Precursor gi|332195201|gb|AEE33322.1| CBS and transporter associated domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218193238|gb|EEC75665.1| hypothetical protein OsI_12456 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|29824374|gb|AAP04147.1| unknown protein [Arabidopsis thaliana] gi|110739091|dbj|BAF01462.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
TAIR|locus:2012045 653 AT1G55930 "AT1G55930" [Arabido 1.0 0.303 0.888 2.5e-88
TAIR|locus:2090024 661 AT3G13070 "AT3G13070" [Arabido 1.0 0.299 0.873 1.1e-87
UNIPROTKB|Q3Z6L6 424 DET1425 "Putative uncharacteri 0.853 0.398 0.348 1.5e-22
TIGR_CMR|DET_1425 424 DET_1425 "conserved hypothetic 0.853 0.398 0.348 1.5e-22
UNIPROTKB|Q609I4 432 MCA1250 "CBS domain protein" [ 0.828 0.379 0.320 1.9e-17
UNIPROTKB|Q47WU1 421 CPS_4076 "Putative magnesium a 0.878 0.413 0.326 1e-16
TIGR_CMR|CPS_4076 421 CPS_4076 "putative magnesium a 0.878 0.413 0.326 1e-16
UNIPROTKB|P37908 428 yfjD "predicted inner membrane 0.878 0.406 0.288 4.9e-16
UNIPROTKB|Q5LSY3 435 SPO1631 "CBS domain protein" [ 0.979 0.445 0.268 5.1e-16
TIGR_CMR|SPO_1631 435 SPO_1631 "CBS domain protein" 0.979 0.445 0.268 5.1e-16
TAIR|locus:2012045 AT1G55930 "AT1G55930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 176/198 (88%), Positives = 188/198 (94%)

Query:     1 VRELAEKEDEAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAAT 60
             VRELAEKE E GVF+MLR+DVTRFLTTILIGTTVVNI ATALVT+AATAIFGEAGVSAAT
Sbjct:   185 VRELAEKEPENGVFRMLRSDVTRFLTTILIGTTVVNIAATALVTKAATAIFGEAGVSAAT 244

Query:    61 GVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALG 120
             GVMTVAILLLTEITPKS+AVH+A +V R VVRPVAWLSLILYPVGRV T++SMG+LK LG
Sbjct:   245 GVMTVAILLLTEITPKSVAVHNAQEVARIVVRPVAWLSLILYPVGRVVTYLSMGILKILG 304

Query:   121 LKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAID 180
             LKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAID
Sbjct:   305 LKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAID 364

Query:   181 GSATLIDFHNLWLTHQYS 198
             GS +L+DFHN W+THQYS
Sbjct:   365 GSGSLVDFHNFWVTHQYS 382
GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2090024 AT3G13070 "AT3G13070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3Z6L6 DET1425 "Putative uncharacterized protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1425 DET_1425 "conserved hypothetical protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q609I4 MCA1250 "CBS domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q47WU1 CPS_4076 "Putative magnesium and cobalt efflux protein CorB" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4076 CPS_4076 "putative magnesium and cobalt efflux protein CorB" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P37908 yfjD "predicted inner membrane protein" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LSY3 SPO1631 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1631 SPO_1631 "CBS domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84R21Y1559_ARATHNo assigned EC number0.88881.00.3032yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
pfam01595182 pfam01595, DUF21, Domain of unknown function DUF21 1e-31
COG1253 429 COG1253, TlyC, Hemolysins and related proteins con 2e-31
COG4536 423 COG4536, CorB, Putative Mg2+ and Co2+ transporter 2e-29
PRK11573 413 PRK11573, PRK11573, hypothetical protein; Provisio 2e-18
TIGR03520 408 TIGR03520, GldE, gliding motility-associated prote 3e-13
COG4535 293 COG4535, CorC, Putative Mg2+ and Co2+ transporter 1e-04
PRK15094 292 PRK15094, PRK15094, magnesium/cobalt efflux protei 3e-04
>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21 Back     alignment and domain information 
 Score =  112 bits (283), Expect = 1e-31
 Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 3/153 (1%)

Query: 1   VRELAEKED-EAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAI-FGEAGVSA 58
           + ELAE+ +  A     L  +  R L T+L+G T+ NI   AL T AA  +  G  GV  
Sbjct: 31  LEELAEEGNKGARRLLKLLANPDRLLATLLLGNTLANILLGALATLAAAELLLGSLGVLL 90

Query: 59  ATGVMTVAILLLTEITPKSIAVHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKA 118
           AT V T+ IL+  EI PK++A  +   +   +  P+  L  +LYP+  + + +S  +L+ 
Sbjct: 91  ATLVSTLLILVFGEILPKTLARRNPERIALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRL 150

Query: 119 LGLKGRSEPYVTEDELKLMLRGAELSGAIEEEE 151
            G+K    P VTE+EL+ ++   E  G IEEEE
Sbjct: 151 FGVKP-EGPAVTEEELRALVDEGEEEGVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182
>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only] Back     alignment and domain information
>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE Back     alignment and domain information
>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 198
PRK11573 413 hypothetical protein; Provisional 100.0
TIGR03520 408 GldE gliding motility-associated protein GldE. Mem 100.0
COG4536 423 CorB Putative Mg2+ and Co2+ transporter CorB [Inor 100.0
COG1253 429 TlyC Hemolysins and related proteins containing CB 100.0
PF01595183 DUF21: Domain of unknown function DUF21; InterPro: 99.97
PRK15094 292 magnesium/cobalt efflux protein CorC; Provisional 99.53
COG4535 293 CorC Putative Mg2+ and Co2+ transporter CorC [Inor 99.41
KOG2118 498 consensus Predicted membrane protein, contains two 99.38
TIGR00400 449 mgtE Mg2+ transporter (mgtE). This family of proka 97.75
TIGR01302 450 IMP_dehydrog inosine-5'-monophosphate dehydrogenas 97.06
COG3448 382 CBS-domain-containing membrane protein [Signal tra 95.66
PF0057157 CBS: CBS domain CBS domain web page. Mutations in 95.34
PRK05567 486 inosine 5'-monophosphate dehydrogenase; Reviewed 94.8
COG4109 432 Predicted transcriptional regulator containing CBS 91.97
cd04597113 CBS_pair_DRTGG_assoc2 This cd contains two tandem 85.78
cd04604114 CBS_pair_KpsF_GutQ_assoc This cd contains two tand 84.97
cd04801114 CBS_pair_M50_like This cd contains two tandem repe 83.26
COG3620187 Predicted transcriptional regulator with C-termina 83.24
COG2239 451 MgtE Mg/Co/Ni transporter MgtE (contains CBS domai 82.35
PRK10892326 D-arabinose 5-phosphate isomerase; Provisional 82.21
PF01036222 Bac_rhodopsin: Bacteriorhodopsin-like protein; Int 81.46
>PRK11573 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.4e-44  Score=314.51  Aligned_cols=196  Identities=26%  Similarity=0.403  Sum_probs=181.9

Q ss_pred             ChhHhhccC-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 046285            1 VRELAEKED-EAGVFKMLRTDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAILLLTEITPKSIA   79 (198)
Q Consensus         1 ~~~la~~~~-~a~~~~~l~~~~~~~l~tilig~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~l~lifgEilPk~la   79 (198)
                      +++++++|+ +|+.++++++||+++++|+|+|||++|++++++++.++..+|+..++.++++++|+++++|||++||++|
T Consensus        23 l~~l~~~g~~~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~~~~ia~~i~t~l~lvfGEiiPK~la  102 (413)
T PRK11573         23 LRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIA  102 (413)
T ss_pred             HHHHHHcCChhHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence            467888887 4778999999999999999999999999999988877777777777888889999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCC--CCCCCHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 046285           80 VHHATDVVRFVVRPVAWLSLILYPVGRVCTFISMGMLKALGLKGRS--EPYVTEDELKLMLRGAELSGAIEEEEQDMIEN  157 (198)
Q Consensus        80 ~~~p~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~r~~g~~~~~--~~~~s~eel~~lv~~~~~~g~l~~~E~~~i~~  157 (198)
                      .+||++++++.++++++++++++|++|+++++++.++|++|.++..  .+.+|+||++.+++.+++  .++++|++||+|
T Consensus       103 ~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~eEl~~lv~~~~~--~l~~~e~~mi~~  180 (413)
T PRK11573        103 ALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHESRS--QISRRNQDMLLS  180 (413)
T ss_pred             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHhh--hcCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987642  356899999999998865  599999999999


Q ss_pred             hhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285          158 VLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS  198 (198)
Q Consensus       158 v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S  198 (198)
                      +|+|+|++|+||||||+||++++.+++++|+++.+.++|||
T Consensus       181 vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~S  221 (413)
T PRK11573        181 VLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHG  221 (413)
T ss_pred             HhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999998

>TIGR03520 GldE gliding motility-associated protein GldE Back     alignment and domain information
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] Back     alignment and domain information
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function Back     alignment and domain information
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional Back     alignment and domain information
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown] Back     alignment and domain information
>TIGR00400 mgtE Mg2+ transporter (mgtE) Back     alignment and domain information
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00571 CBS: CBS domain CBS domain web page Back     alignment and domain information
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed Back     alignment and domain information
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] Back     alignment and domain information
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream Back     alignment and domain information
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein Back     alignment and domain information
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 Back     alignment and domain information
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] Back     alignment and domain information
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional Back     alignment and domain information
>PF01036 Bac_rhodopsin: Bacteriorhodopsin-like protein; InterPro: IPR001425 The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
3lhh_A172 CBS domain protein; structural genomics, PSI-2, pr 2e-24
3oi8_A156 Uncharacterized protein; structural genomics, PSI- 5e-19
3ocm_A 173 Putative membrane protein; structural genomics, PS 3e-14
3lv9_A148 Putative transporter; CBS domain, PSI, MCSG, struc 6e-14
3oco_A153 Hemolysin-like protein containing CBS domains; str 1e-12
3i8n_A130 Uncharacterized protein VP2912; APC64273.1, vibrio 1e-04
3nqr_A127 Magnesium and cobalt efflux protein CORC; structur 2e-04
3lfr_A136 Putative metal ION transporter; CBS, AMP, PSI, MCS 2e-04
3jtf_A129 Magnesium and cobalt efflux protein; CBS domain, C 5e-04
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172 Back     alignment and structure
 Score = 92.9 bits (232), Expect = 2e-24
 Identities = 19/76 (25%), Positives = 38/76 (50%)

Query: 123 GRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGS 182
           G  +  VT+++++ ML+    +G IE  E  M++NV  + +  +  +M P  D+V +D +
Sbjct: 1   GHLDDNVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLN 60

Query: 183 ATLIDFHNLWLTHQYS 198
             L       +   +S
Sbjct: 61  LPLDANLRTVMQSPHS 76
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156 Back     alignment and structure
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173 Back     alignment and structure
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148 Back     alignment and structure
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153 Back     alignment and structure
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130 Back     alignment and structure
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127 Back     alignment and structure
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136 Back     alignment and structure
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
3oi8_A156 Uncharacterized protein; structural genomics, PSI- 99.41
3lhh_A172 CBS domain protein; structural genomics, PSI-2, pr 99.23
3ocm_A 173 Putative membrane protein; structural genomics, PS 98.94
3lv9_A148 Putative transporter; CBS domain, PSI, MCSG, struc 98.76
3oco_A153 Hemolysin-like protein containing CBS domains; str 98.34
3t4n_C 323 Nuclear protein SNF4; CBS domain, nucleotide bindi 98.28
2zy9_A 473 Mg2+ transporter MGTE; membrane protien, metal tra 97.9
3kxr_A 205 Magnesium transporter, putative; cystathionine bet 97.87
2v8q_E 330 5'-AMP-activated protein kinase subunit gamma-1; p 97.83
2yvy_A 278 MGTE, Mg2+ transporter MGTE; membrane protein, tra 97.65
2oux_A 286 Magnesium transporter; 10001B, structural genomics 96.24
4fxs_A 496 Inosine-5'-monophosphate dehydrogenase; structural 96.04
3k2v_A149 Putative D-arabinose 5-phosphate isomerase; KPSF-l 95.97
3org_A 632 CMCLC; transporter, transport protein; 3.50A {Cyan 95.82
1zfj_A 491 Inosine monophosphate dehydrogenase; IMPDH, CBS do 95.76
3kh5_A 280 Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a 95.42
3fhm_A 165 Uncharacterized protein ATU1752; CBS domain, proka 94.74
3ddj_A 296 CBS domain-containing protein; structural genomics 94.7
3fv6_A159 YQZB protein; CBS domain dimer, metabolism regulat 94.08
2cu0_A 486 Inosine-5'-monophosphate dehydrogenase; structural 93.72
3l2b_A245 Probable manganase-dependent inorganic pyrophospha 93.6
4avf_A 490 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 93.0
1me8_A 503 Inosine-5'-monophosphate dehydrogenase; alpha beta 92.11
2rc3_A135 CBS domain; in SITU proteolysis, BR, structural ge 91.73
1pbj_A125 Hypothetical protein; structural genomics, domain, 91.7
4fry_A157 Putative signal-transduction protein with CBS DOM; 91.2
1vr9_A 213 CBS domain protein/ACT domain protein; structural 91.1
3usb_A 511 Inosine-5'-monophosphate dehydrogenase; structural 89.76
1pvm_A184 Conserved hypothetical protein TA0289; structural 89.23
2yzi_A138 Hypothetical protein PH0107; sheet/helix/sheet/she 89.03
2uv4_A152 5'-AMP-activated protein kinase subunit gamma-1; t 88.12
2nyc_A144 Nuclear protein SNF4; bateman2 domain, AMP kinase, 87.85
1o50_A157 CBS domain-containing predicted protein TM0935; CB 87.36
3fhm_A165 Uncharacterized protein ATU1752; CBS domain, proka 87.11
3lfr_A136 Putative metal ION transporter; CBS, AMP, PSI, MCS 87.01
3kpb_A122 Uncharacterized protein MJ0100; CBS domain, S-aden 86.87
3lhh_A172 CBS domain protein; structural genomics, PSI-2, pr 86.8
2emq_A157 Hypothetical conserved protein; CBS domains, NPPSF 86.04
2o16_A160 Acetoin utilization protein ACUB, putative; struct 85.9
4gqw_A152 CBS domain-containing protein CBSX1, chloroplasti; 85.79
1yav_A159 Hypothetical protein BSU14130; cystathionine beta 85.71
3lqn_A150 CBS domain protein; csgid, structural genomics, un 85.34
1y5h_A133 Hypothetical protein RV2626C; CBS domain, unknown 85.08
3lv9_A148 Putative transporter; CBS domain, PSI, MCSG, struc 84.76
3oco_A153 Hemolysin-like protein containing CBS domains; str 84.66
3jtf_A129 Magnesium and cobalt efflux protein; CBS domain, C 84.21
2ef7_A133 Hypothetical protein ST2348; CBS-domain, structura 84.1
3i8n_A130 Uncharacterized protein VP2912; APC64273.1, vibrio 83.54
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 83.54
2j9l_A185 Chloride channel protein 5; ION channel, ION trans 82.79
2rih_A141 Conserved protein with 2 CBS domains; bateman doma 82.46
3k2v_A149 Putative D-arabinose 5-phosphate isomerase; KPSF-l 82.45
3nqr_A127 Magnesium and cobalt efflux protein CORC; structur 81.07
4esy_A170 CBS domain containing membrane protein; structural 80.88
3oi8_A156 Uncharacterized protein; structural genomics, PSI- 80.49
1me8_A 503 Inosine-5'-monophosphate dehydrogenase; alpha beta 80.07
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Back     alignment and structure
Probab=99.41  E-value=4.5e-13  Score=101.07  Aligned_cols=71  Identities=15%  Similarity=0.230  Sum_probs=68.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCcHHHHHHHHHhhccCCcccccccccccceEEEeCCCCHHHHHHHHHhCCCC
Q 046285          128 YVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS  198 (198)
Q Consensus       128 ~~s~eel~~lv~~~~~~g~l~~~E~~~i~~v~~~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~S  198 (198)
                      .+|+|||+.+++.++++|.++++|+++++++++|++.+|+|+|+||+++++++.++++.++++.+.+++|+
T Consensus         2 ~~t~~el~~li~~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~   72 (156)
T 3oi8_A            2 NASAEDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHS   72 (156)
T ss_dssp             CCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHHHhHHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999875
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Back     alignment and structure
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Back     alignment and structure
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Back     alignment and structure
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Back     alignment and structure
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Back     alignment and structure
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Back     alignment and structure
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Back     alignment and structure
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Back     alignment and structure
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Back     alignment and structure
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Back     alignment and structure
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Back     alignment and structure
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Back     alignment and structure
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Back     alignment and structure
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Back     alignment and structure
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Back     alignment and structure
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Back     alignment and structure
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Back     alignment and structure
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Back     alignment and structure
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Back     alignment and structure
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Back     alignment and structure
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Back     alignment and structure
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Back     alignment and structure
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Back     alignment and structure
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Back     alignment and structure
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Back     alignment and structure
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Back     alignment and structure
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Back     alignment and structure
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Back     alignment and structure
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* Back     alignment and structure
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Back     alignment and structure
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Back     alignment and structure
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Back     alignment and structure
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} Back     alignment and structure
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Back     alignment and structure
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 Back     alignment and structure
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Back     alignment and structure
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Back     alignment and structure
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Back     alignment and structure
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Back     alignment and structure
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Back     alignment and structure
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Back     alignment and structure
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Back     alignment and structure
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Back     alignment and structure
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Back     alignment and structure
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} Back     alignment and structure
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Back     alignment and structure
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 198
d2ooxe1 179 d.37.1.1 (E:3-181) Uncharacterized protein C1556.0 2e-04
d1yava3132 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac 0.004
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 5/53 (9%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 147 IEEEEQDMIENVLE-IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQYS 198
           ++E ++  ++ +   I+     +V+     ++  D +  +    +L   +   
Sbjct: 2   VQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIV 54
>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
d1jr1a4120 Type II inosine monophosphate dehydrogenase CBS do 88.6
d2yzia1132 Uncharacterized protein PH0107 {Pyrococcus horikos 88.02
d1y5ha3123 Hypothetical protein Rv2626c {Mycobacterium tuberc 87.18
d1pbja3120 Hypothetical protein MTH1622 {Archaeon Methanobact 86.64
d1pvma4142 Hypothetical protein Ta0289 {Archaeon Thermoplasma 85.49
d2yzqa1156 Uncharacterized protein PH1780 {Pyrococcus horikos 85.17
d2rc3a1127 Uncharacterized protein NE2398 {Nitrosomonas europ 83.92
d1uaza_236 Archaerhodopsin-1 {Archaeon Halobacterium sp. [Tax 82.14
d3ddja1141 Uncharacterized protein SSO3205 {Sulfolobus solfat 80.07
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=88.60  E-value=0.074  Score=35.73  Aligned_cols=37  Identities=22%  Similarity=0.257  Sum_probs=26.9

Q ss_pred             cCCcccccccccccceEEEeCCCCHHHHHHHHHhCCC
Q 046285          161 IKDTHVREVMTPLVDVVAIDGSATLIDFHNLWLTHQY  197 (198)
Q Consensus       161 ~~~~~v~eiM~PR~~i~~l~~~~~~~e~~~~~~~~~~  197 (198)
                      -.+..+.++|+++.+++.++.+++++++.+.+.+++.
T Consensus        58 ~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i   94 (120)
T d1jr1a4          58 EHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKK   94 (120)
T ss_dssp             --------CCSBTTTSCCEETTCCHHHHHHHTCSCC-
T ss_pred             ccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCc
Confidence            3467899999999999999999999999999998875
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]} Back     information, alignment and structure
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure