Citrus Sinensis ID: 046286

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MEGREPHPVSSPMSPQPNYLFTPSIPSSSMQPATLEPQVLPEIDWVSLLSAQSTDHNMMESTSHLNPENGGGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccEEcccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEcccccccccHEEEEccccccEEEEEEccccccccccccccccccccccHHHccc
Coil and Loop (DISEMBL)
megrephpvsspmspqpnylftpsipsssmqpatlepqvlpeidWVSLLSaqstdhnmmestshlnpengggrdqqdqgckenkrkgsrmkkatrprfafqtrsaddilddGYRWRKYGQkavknslyprsyyrcthhtcnvKKQVQRLSKDTSIVVTTyegihnhpceKLMETLTPLLKQMQFLARF
Flexible Loop (DISEMBL)
megrephpvsspmspqpNYLFTPSIPSSSMQPATLEPQVLPEIDWVSLLSAQSTDHNMMESTShlnpengggrdqqdqgckenkrkgsrmkkatrprfafqtrsaddilddgyRWRKYGQKAVKNSLYPRSYYRCTHHTcnvkkqvqrlsKDTSIVVTTYegihnhpceKLMETLTPLLKQMQFLARF
Low Complexity Region (SEG)
MEGREPHPVSSPMSPQPNYLFTPSIPSSSMQPATLEPQVLPEIDWVSLLSAQSTDHNMMESTSHLNPENGGGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF
Disordered region (IsUnstruct)
***************************************LPEIDWVSL*******************************************************SADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQ*****
Disordered Region (DISOPRED)
***************************************************************************************************FQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNH**********************
Disordered Region (DISEMBL)
*************SPQPNYLFTPSIPSSSMQPATLEPQVLPEIDWVSLLSAQSTD****************************************PRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF
Disordered Region (DISPRO)
*********************************************************************************************TRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHN***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGREPHPVSSPMSPQPNYLFTPSIPSSSMQPATLEPQVLPEIDWVSLLSAQSTDHNMMESTSHLNPENGGGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q8GY11	109	Probable WRKY transcripti	yes	no	0.542	0.935	0.794	2e-44
Q9FFS3	179	Probable WRKY transcripti	no	no	0.617	0.648	0.685	3e-43
Q8VWQ4	195	Probable WRKY transcripti	no	no	0.547	0.528	0.742	8e-43
Q9FYA2	145	Probable WRKY transcripti	no	no	0.489	0.634	0.684	4e-33
Q93WY4	218	Probable WRKY transcripti	no	no	0.489	0.422	0.608	4e-28
Q8VWJ2	318	Probable WRKY transcripti	no	no	0.494	0.292	0.606	1e-26
Q9S763	147	Probable WRKY transcripti	no	no	0.489	0.625	0.597	2e-26
Q9C983	287	Probable WRKY transcripti	no	no	0.441	0.289	0.650	2e-25
Q9FGZ4	399	Probable WRKY transcripti	no	no	0.377	0.177	0.746	8e-25
Q93WV4	282	Probable WRKY transcripti	no	no	0.382	0.255	0.722	8e-25

>sp|Q8GY11|WRK43_ARATH Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 91/102 (89%)

Query: 87  GSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQV 146
            SR KK   PRF+F+T+S  DILDDGYRWRKYGQK+VKNSLYPRSYYRCT H CNVKKQV
Sbjct: 7   SSRDKKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQV 66

Query: 147 QRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF 188
           QRLSK+TSIV TTYEGIHNHPCE+LM+TLTPLL Q+QFL++F
Sbjct: 67  QRLSKETSIVETTYEGIHNHPCEELMQTLTPLLHQLQFLSKF 108

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS3|WRK24_ARATH Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 99/124 (79%), Gaps = 8/124 (6%)

Query: 65  LNPENGGGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVK 124
           L PEN    DQ  +  KE K K SR      PR AF TRS DD+LDDGYRWRKYGQK+VK
Sbjct: 61  LPPEN----DQIGEKGKELKEKRSR----KVPRIAFHTRSDDDVLDDGYRWRKYGQKSVK 112

Query: 125 NSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQF 184
           ++ +PRSYYRCT+HTCNVKKQVQRL+KD ++VVTTYEG+HNHPCEKLMETL PLL+Q+QF
Sbjct: 113 HNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLNPLLRQLQF 172

Query: 185 LARF 188
           L+ F
Sbjct: 173 LSSF 176

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWQ4|WRK56_ARATH Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1

 Score =  173 bits (438), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 78/105 (74%), Positives = 91/105 (86%), Gaps = 2/105 (1%)

Query: 83  NKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNV 142
           NK KG R       R AF TRS DD+LDDGYRWRKYGQK+VKN+ +PRSYYRCT+HTCNV
Sbjct: 89  NKGKGKR--TLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNV 146

Query: 143 KKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLAR 187
           KKQVQRL+KD ++VVTTYEG+HNHPCEKLMETL+PLL+Q+QFL+R
Sbjct: 147 KKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLSPLLRQLQFLSR 191

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYA2|WRK75_ARATH Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 73/92 (79%)

Query: 97  RFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIV 156
           R+AFQTRS  DILDDGYRWRKYGQKAVKN+ +PRSYYRCT+  CNVKKQVQRL+ D  +V
Sbjct: 54  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVV 113

Query: 157 VTTYEGIHNHPCEKLMETLTPLLKQMQFLARF 188
           VTTYEG+H+HP EK  E    +L QMQ  + F
Sbjct: 114 VTTYEGVHSHPIEKSTENFEHILTQMQIYSSF 145

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 70/92 (76%)

Query: 75  QQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYR 134
           + + G  + K K    +K   PRF FQT+S  D+LDDGY+WRKYGQK VKNSL+PRSYYR
Sbjct: 110 RSNSGSGDMKNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYR 169

Query: 135 CTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNH 166
           CTH+ C VKK+V+RLS+D  +V+TTYEG HNH
Sbjct: 170 CTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 71/94 (75%), Gaps = 1/94 (1%)

Query: 75  QQDQGCKE-NKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYY 133
           ++DQ  K+  K K + +KK   PR +F T+S  D L+DGYRWRKYGQKAVKNS YPRSYY
Sbjct: 136 EEDQISKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYY 195

Query: 134 RCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 167
           RCT   CNVKK+V+R  +D ++V+TTYEG HNHP
Sbjct: 196 RCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHP 229

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S763|WRK45_ARATH Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 65/92 (70%)

Query: 97  RFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIV 156
           R+AFQTRS  DILDDGYRWRKYGQKAVKN+ +PRSYY+CT   C VKKQVQR   D  +V
Sbjct: 52  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVV 111

Query: 157 VTTYEGIHNHPCEKLMETLTPLLKQMQFLARF 188
           VTTY+G+H H  +K  +    +L QM     F
Sbjct: 112 VTTYQGVHTHAVDKPSDNFHHILTQMHIFPPF 143

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 63/83 (75%)

Query: 84  KRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVK 143
           K K    K+  +PRFAF T+S  D L+DGYRWRKYGQKAVKNS +PRSYYRCT+  C VK
Sbjct: 121 KEKKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVK 180

Query: 144 KQVQRLSKDTSIVVTTYEGIHNH 166
           K+V+R S D SIV+TTYEG H H
Sbjct: 181 KRVERSSDDPSIVITTYEGQHCH 203

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  113 bits (282), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 57/71 (80%)

Query: 97  RFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIV 156
           RFAF T+S  D LDDGYRWRKYGQKAVKNS YPRSYYRCT   C VKK+V+R S D SIV
Sbjct: 208 RFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIV 267

Query: 157 VTTYEGIHNHP 167
           +TTYEG H HP
Sbjct: 268 MTTYEGQHTHP 278

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV4|WRK71_ARATH Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1

 Score =  113 bits (282), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 58/72 (80%)

Query: 97  RFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIV 156
           R AF T+S  D L+DGYRWRKYGQKAVKNS YPRSYYRCT   CNVKK+V+R  +D SIV
Sbjct: 123 RVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIV 182

Query: 157 VTTYEGIHNHPC 168
           +TTYEG HNHP 
Sbjct: 183 ITTYEGKHNHPI 194

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
346455891	204	WRKY transcription factor 23-1 [Dimocarp	0.888	0.818	0.741	4e-66
259121403	192	WRKY transcription factor 19 [(Populus t	0.813	0.796	0.761	2e-64
297745331	201	unnamed protein product [Vitis vinifera]	0.893	0.835	0.643	2e-61
255541724	192	WRKY transcription factor, putative [Ric	0.962	0.942	0.653	7e-60
356560319	195	PREDICTED: probable WRKY transcription f	0.898	0.866	0.677	1e-57
359489647	165	PREDICTED: probable WRKY transcription f	0.771	0.878	0.698	2e-57
147841419	168	hypothetical protein VITISV_006168 [Viti	0.771	0.863	0.698	2e-57
356568449	192	PREDICTED: probable WRKY transcription f	0.867	0.848	0.677	2e-57
151934229	195	WRKY64 [Glycine max]	0.867	0.835	0.677	2e-57
356531945	192	PREDICTED: probable WRKY transcription f	0.872	0.854	0.670	1e-56

>gi|346455891|gb|AEO31472.1| WRKY transcription factor 23-1 [Dimocarpus longan]

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 135/182 (74%), Positives = 150/182 (82%), Gaps = 15/182 (8%)

Query: 19  YLFTPSIPSSSMQPATLEPQVLPEIDWVSLLSAQST--------DHNMMES-TSHLNPEN 69
           YLF PS+PS S     LEPQ+LP+IDWV+LLS QS+        +  +MES +S +  EN
Sbjct: 26  YLFAPSLPSCSSLHPPLEPQILPDIDWVTLLSGQSSSSLGLSHENGQVMESNSSSVMAEN 85

Query: 70  GGGRDQQDQGCKENK---RKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNS 126
           G    ++++G +EN    RK SRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNS
Sbjct: 86  GV---EEEKGSRENNNKMRKSSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNS 142

Query: 127 LYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLA 186
           +YPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLA
Sbjct: 143 IYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLA 202

Query: 187 RF 188
           RF
Sbjct: 203 RF 204

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121403|gb|ACV92021.1| WRKY transcription factor 19 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/159 (76%), Positives = 136/159 (85%), Gaps = 6/159 (3%)

Query: 32  PATLEPQVLPEIDWVSLLSAQS--TDHNMMESTSHLNPENGGGRDQQDQGCKENKRKGSR 89
           P+ +EPQVLP+IDWV LLS QS   +   +  ++ +  ENG    ++++G K+ K KG R
Sbjct: 38  PSIIEPQVLPDIDWVGLLSGQSQLGEKRPVTESASMVAENGA---EEEKGNKDEK-KGGR 93

Query: 90  MKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRL 149
           MK+ATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNS YPRSYYRCTHHTCNVKKQVQRL
Sbjct: 94  MKRATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRL 153

Query: 150 SKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF 188
           SKDTSIVVTTYEGIHNHPCEK+METLTPLLKQMQFLARF
Sbjct: 154 SKDTSIVVTTYEGIHNHPCEKMMETLTPLLKQMQFLARF 192

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745331|emb|CBI40411.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/188 (64%), Positives = 144/188 (76%), Gaps = 20/188 (10%)

Query: 14  SPQPNYLFTPSIPSSSMQPATLE---------PQVLPEIDWVSLLSAQSTDHNM---MES 61
           S   ++LFTPS+PSSSM P              Q+L +IDW +LLSAQ+   ++    E 
Sbjct: 21  SQASSFLFTPSLPSSSMHPHLQLPPPPLPPLQAQILGDIDWATLLSAQTGLSDLYPRAEG 80

Query: 62  TSHLNPENGGGRDQQDQGCKENKRKGSRM-KKATRPRFAFQTRSADDILDDGYRWRKYGQ 120
           TS +  E       +++G  +++RKG R  +KATRPRFAFQTRS DDILDDGYRWRKYGQ
Sbjct: 81  TSSVMAE-------EEKGSIKDRRKGVRTTRKATRPRFAFQTRSVDDILDDGYRWRKYGQ 133

Query: 121 KAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLK 180
           KAVKNS+YPRSYYRCTHHTC+VKKQVQRLSKDTS+VVTTYEGIHNHPCEKLMETL+PLLK
Sbjct: 134 KAVKNSIYPRSYYRCTHHTCDVKKQVQRLSKDTSVVVTTYEGIHNHPCEKLMETLSPLLK 193

Query: 181 QMQFLARF 188
           Q+QFL+RF
Sbjct: 194 QIQFLSRF 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541724|ref|XP_002511926.1| WRKY transcription factor, putative [Ricinus communis] gi|223549106|gb|EEF50595.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  235 bits (599), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 130/199 (65%), Positives = 149/199 (74%), Gaps = 18/199 (9%)

Query: 1   MEGRE-PHP--VSSPMSPQPN-YLFTPS---IPSSSMQPATLEPQV-LPEIDWVSLLSAQ 52
           MEG+E P P  +   + PQ + YLFTP    +PSSS+ P  ++PQV LP+IDWV+LLS+Q
Sbjct: 1   MEGQETPQPPLLVHELPPQNSPYLFTPPHPLLPSSSLHPPVIDPQVVLPDIDWVALLSSQ 60

Query: 53  ST---DHNMMESTSHLNPENGGGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDIL 109
           S    +  MM   + L  E G    ++++G K+  RK  R+KK   PRFAFQTRSADDIL
Sbjct: 61  SVVGENRPMMMENASLIGETGA---EEEKGNKDKLRKSGRIKKHITPRFAFQTRSADDIL 117

Query: 110 DDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCE 169
           DDGYRWRKYGQKAVKNS YPR    CTHHTC VKKQVQRLSKDTSIVVTTYEGIHNHPCE
Sbjct: 118 DDGYRWRKYGQKAVKNSSYPR----CTHHTCIVKKQVQRLSKDTSIVVTTYEGIHNHPCE 173

Query: 170 KLMETLTPLLKQMQFLARF 188
           KLMETLTPLLKQMQFL RF
Sbjct: 174 KLMETLTPLLKQMQFLTRF 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560319|ref|XP_003548440.1| PREDICTED: probable WRKY transcription factor 56-like [Glycine max]

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 120/177 (67%), Positives = 133/177 (75%), Gaps = 8/177 (4%)

Query: 17  PNYLFTPSIPSSSMQPATLEPQVL-PEIDWVSLLSAQS---TDHN-MMESTSHLNPENGG 71
           P +LFTP    S MQ   LEPQ L  +IDWVSL S QS    D N MME  S  +  +  
Sbjct: 10  PPFLFTPM---SMMQNPNLEPQGLHDDIDWVSLFSGQSNFLADANAMMECASSSSSSSSS 66

Query: 72  GRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRS 131
                 +   +   KG R++K TRPRFAFQTRS DDILDDGYRWRKYGQKAVKN+++PRS
Sbjct: 67  SCALMAEKSDKETMKGGRLRKTTRPRFAFQTRSEDDILDDGYRWRKYGQKAVKNNMHPRS 126

Query: 132 YYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF 188
           YYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLL+QMQFL+R 
Sbjct: 127 YYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLRQMQFLSRL 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489647|ref|XP_002275528.2| PREDICTED: probable WRKY transcription factor 24 [Vitis vinifera]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 129/156 (82%), Gaps = 11/156 (7%)

Query: 37  PQVLPEIDWVSLLSAQSTDHNM---MESTSHLNPENGGGRDQQDQGCKENKRKGSRM-KK 92
            Q+L +IDW +LLSAQ+   ++    E TS +  E       +++G  +++RKG R  +K
Sbjct: 17  AQILGDIDWATLLSAQTGLSDLYPRAEGTSSVMAE-------EEKGSIKDRRKGVRTTRK 69

Query: 93  ATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKD 152
           ATRPRFAFQTRS DDILDDGYRWRKYGQKAVKNS+YPRSYYRCTHHTC+VKKQVQRLSKD
Sbjct: 70  ATRPRFAFQTRSVDDILDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCDVKKQVQRLSKD 129

Query: 153 TSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF 188
           TS+VVTTYEGIHNHPCEKLMETL+PLLKQ+QFL+RF
Sbjct: 130 TSVVVTTYEGIHNHPCEKLMETLSPLLKQIQFLSRF 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841419|emb|CAN73363.1| hypothetical protein VITISV_006168 [Vitis vinifera]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 129/156 (82%), Gaps = 11/156 (7%)

Query: 37  PQVLPEIDWVSLLSAQSTDHNM---MESTSHLNPENGGGRDQQDQGCKENKRKGSRM-KK 92
            Q+L +IDW +LLSAQ+   ++    E TS +  E       +++G  +++RKG R  +K
Sbjct: 20  AQILGDIDWATLLSAQTGLSDLYPRAEGTSSVMAE-------EEKGSIKDRRKGVRTTRK 72

Query: 93  ATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKD 152
           ATRPRFAFQTRS DDILDDGYRWRKYGQKAVKNS+YPRSYYRCTHHTC+VKKQVQRLSKD
Sbjct: 73  ATRPRFAFQTRSVDDILDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCDVKKQVQRLSKD 132

Query: 153 TSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF 188
           TS+VVTTYEGIHNHPCEKLMETL+PLLKQ+QFL+RF
Sbjct: 133 TSVVVTTYEGIHNHPCEKLMETLSPLLKQIQFLSRF 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568449|ref|XP_003552423.1| PREDICTED: probable WRKY transcription factor 24 [Glycine max]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 138/180 (76%), Gaps = 17/180 (9%)

Query: 19  YLFTPSIPSSSMQPATLEPQV---LPEIDWVSLLSAQST--------DHNMMESTSHLNP 67
           +LFTP+   S +Q   L+PQ    L +IDW +L SAQ++        D     S+S    
Sbjct: 16  FLFTPN---SMLQSPNLDPQEQLGLCDIDWGNLFSAQNSFLLNGDANDAIECASSSSFVA 72

Query: 68  ENGGGRDQQDQGCKENKRKGSRMKKATR-PRFAFQTRSADDILDDGYRWRKYGQKAVKNS 126
           +N    +++ +G KE KRKG RMKK TR PRFAFQTRSADDILDDGYRWRKYGQKAVKN+
Sbjct: 73  QNKVACEEE-KGNKE-KRKGGRMKKTTRVPRFAFQTRSADDILDDGYRWRKYGQKAVKNN 130

Query: 127 LYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLA 186
            YPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQ+QFLA
Sbjct: 131 TYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLA 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151934229|gb|ABS18452.1| WRKY64 [Glycine max]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 138/180 (76%), Gaps = 17/180 (9%)

Query: 19  YLFTPSIPSSSMQPATLEPQV---LPEIDWVSLLSAQST--------DHNMMESTSHLNP 67
           +LFTP+   S +Q   L+PQ    L +IDW +L SAQ++        D     S+S    
Sbjct: 19  FLFTPN---SMLQSPNLDPQEQLGLCDIDWGNLFSAQNSFLLNGDANDAIECASSSSFVA 75

Query: 68  ENGGGRDQQDQGCKENKRKGSRMKKATR-PRFAFQTRSADDILDDGYRWRKYGQKAVKNS 126
           +N    +++ +G KE KRKG RMKK TR PRFAFQTRSADDILDDGYRWRKYGQKAVKN+
Sbjct: 76  QNKVACEEE-KGNKE-KRKGGRMKKTTRVPRFAFQTRSADDILDDGYRWRKYGQKAVKNN 133

Query: 127 LYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLA 186
            YPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQ+QFLA
Sbjct: 134 TYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLA 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531945|ref|XP_003534536.1| PREDICTED: probable WRKY transcription factor 24-like [Glycine max]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/179 (67%), Positives = 136/179 (75%), Gaps = 15/179 (8%)

Query: 19  YLFTPSIPSSSMQPATLEPQV---LPEIDWVSLLSAQS------TDHNMMESTSHLN-PE 68
           ++FTP+   S +Q    +PQ    L +IDW +L SAQ+         + +E  S  +   
Sbjct: 16  FIFTPN---SMLQNPNWDPQEQSGLCDIDWGNLFSAQNGLLLNGDAKDAIECASSFSFVA 72

Query: 69  NGGGRDQQDQGCKENKRKGSRMKKATR-PRFAFQTRSADDILDDGYRWRKYGQKAVKNSL 127
              G  ++++G KE KRKG RMKK TR PRFAFQTRSADDILDDGYRWRKYGQKAVKNS 
Sbjct: 73  QNKGVCEEEKGNKE-KRKGGRMKKTTRVPRFAFQTRSADDILDDGYRWRKYGQKAVKNST 131

Query: 128 YPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLA 186
           YPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQ+QFLA
Sbjct: 132 YPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLA 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2160512	179	WRKY24 "WRKY DNA-binding prote	0.925	0.972	0.510	1.9e-42
TAIR|locus:2062949	109	WRKY43 "WRKY DNA-binding prote	0.537	0.926	0.801	4e-42
TAIR|locus:2024583	195	WRKY56 "WRKY DNA-binding prote	0.611	0.589	0.672	1.4e-41
TAIR|locus:2179862	145	WRKY75 "WRKY DNA-binding prote	0.659	0.855	0.569	1.7e-34
TAIR|locus:505006317	218	WRKY12 "WRKY DNA-binding prote	0.510	0.440	0.612	1.2e-28
TAIR|locus:2078703	147	WRKY45 "WRKY DNA-binding prote	0.638	0.816	0.508	1.9e-28
TAIR|locus:2065124	337	WRKY23 "WRKY DNA-binding prote	0.797	0.445	0.432	2.4e-28
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.675	0.318	0.523	2.4e-28
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.776	0.517	0.464	3.1e-28
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.797	0.471	0.459	5e-28

TAIR|locus:2160512 WRKY24 "WRKY DNA-binding protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 97/190 (51%), Positives = 124/190 (65%)

Query:     1 MEGREPHPVSSPMSPQPNYLFTPSIPSSSMQ--PATLEPQVLPEIDWVSLLSAQSTDHNM 58
             M+  + +P+ S +  + N  F+  +  + M   P+T   +V P        S+     + 
Sbjct:     1 MDREDINPMLSRLDVENNNTFSSFVDKTLMMMPPSTFSGEVEPSS------SSSWYPESF 54

Query:    59 MESTSHLNPENGGGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKY 118
                   L PEN    DQ  +  KE K K SR  K   PR AF TRS DD+LDDGYRWRKY
Sbjct:    55 HVHAPPLPPEN----DQIGEKGKELKEKRSR--KV--PRIAFHTRSDDDVLDDGYRWRKY 106

Query:   119 GQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPL 178
             GQK+VK++ +PRSYYRCT+HTCNVKKQVQRL+KD ++VVTTYEG+HNHPCEKLMETL PL
Sbjct:   107 GQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLNPL 166

Query:   179 LKQMQFLARF 188
             L+Q+QFL+ F
Sbjct:   167 LRQLQFLSSF 176

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062949 WRKY43 "WRKY DNA-binding protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 81/101 (80%), Positives = 91/101 (90%)

Query:    88 SRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQ 147
             SR KK   PRF+F+T+S  DILDDGYRWRKYGQK+VKNSLYPRSYYRCT H CNVKKQVQ
Sbjct:     8 SRDKKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQ 67

Query:   148 RLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF 188
             RLSK+TSIV TTYEGIHNHPCE+LM+TLTPLL Q+QFL++F
Sbjct:    68 RLSKETSIVETTYEGIHNHPCEELMQTLTPLLHQLQFLSKF 108

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2024583 WRKY56 "WRKY DNA-binding protein 56" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 80/119 (67%), Positives = 95/119 (79%)

Query:    69 NGGGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLY 128
             N       ++ C  NK KG R       R AF TRS DD+LDDGYRWRKYGQK+VKN+ +
Sbjct:    77 NNSNNSDHNKNC--NKGKGKRT--LAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAH 132

Query:   129 PRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLAR 187
             PRSYYRCT+HTCNVKKQVQRL+KD ++VVTTYEG+HNHPCEKLMETL+PLL+Q+QFL+R
Sbjct:   133 PRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLSPLLRQLQFLSR 191

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2179862 WRKY75 "WRKY DNA-binding protein 75" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 74/130 (56%), Positives = 90/130 (69%)

Query:    63 SHLNPENGGGRDQ----QDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKY 118
             SH  PE   G ++    + +GC  +K   S  KK  + R+AFQTRS  DILDDGYRWRKY
Sbjct:    18 SHSKPELHQGEEESSKVRSEGC--SKSVESSKKKGKKQRYAFQTRSQVDILDDGYRWRKY 75

Query:   119 GQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPL 178
             GQKAVKN+ +PRSYYRCT+  CNVKKQVQRL+ D  +VVTTYEG+H+HP EK  E    +
Sbjct:    76 GQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHPIEKSTENFEHI 135

Query:   179 LKQMQFLARF 188
             L QMQ  + F
Sbjct:   136 LTQMQIYSSF 145

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0032107 "regulation of response to nutrient levels" evidence=IMP

GO:0043620 "regulation of DNA-dependent transcription in response to stress" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:505006317 WRKY12 "WRKY DNA-binding protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 60/98 (61%), Positives = 71/98 (72%)

Query:    69 NGGGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLY 128
             N   R     G  +NK K  R  K   PRF FQT+S  D+LDDGY+WRKYGQK VKNSL+
Sbjct:   106 NSWWRSNSGSGDMKNKVKIRR--KLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLH 163

Query:   129 PRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNH 166
             PRSYYRCTH+ C VKK+V+RLS+D  +V+TTYEG HNH
Sbjct:   164 PRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2078703 WRKY45 "WRKY DNA-binding protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 61/120 (50%), Positives = 74/120 (61%)

Query:    69 NGGGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLY 128
             +G     Q     E K +  + KK    R+AFQTRS  DILDDGYRWRKYGQKAVKN+ +
Sbjct:    24 HGVDNSAQPTTSSEEKPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPF 83

Query:   129 PRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLARF 188
             PRSYY+CT   C VKKQVQR   D  +VVTTY+G+H H  +K  +    +L QM     F
Sbjct:    84 PRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHTHAVDKPSDNFHHILTQMHIFPPF 143

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2065124 WRKY23 "WRKY DNA-binding protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 67/155 (43%), Positives = 90/155 (58%)

Query:    14 SPQPNYLFTPSIPSSSMQPATLEPQVLPEIDWVSLLSAQSTDHNMMESTSHLNPENGGGR 73
             +P    L T  + S       + P   P    +S  S+++ +    ++  +   E  GG 
Sbjct:    79 APPSEQLVTSKVESLCSDHLLINPPATPNSSSISSASSEALNEEKPKTEDN---EEEGGE 135

Query:    74 DQQDQGC--KENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRS 131
             DQQ++    K+ K K +  K+    R AF T+S  D L+DGYRWRKYGQKAVKNS +PRS
Sbjct:   136 DQQEKSHTKKQLKAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRS 195

Query:   132 YYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNH 166
             YYRCT  +CNVKK+V+R  +D S VVTTYEG H H
Sbjct:   196 YYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 230

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 67/128 (52%), Positives = 79/128 (61%)

Query:    41 PEIDWVSLLSAQSTDHNMMESTSHLNPENGGGRDQQDQGCKEN-KRKGSRMKKATRPRFA 99
             P    VS  S ++ + N       +  +  G + Q+ +G K   K K    KKA   RFA
Sbjct:   151 PNSTSVSSSSNEAANDNNSGKEVTVKDQEEGDQQQEQKGTKPQLKAKKKNQKKAREARFA 210

Query:   100 FQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTT 159
             F T+S  D LDDGYRWRKYGQKAVKNS YPRSYYRCT   C VKK+V+R S D SIV+TT
Sbjct:   211 FLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTT 270

Query:   160 YEGIHNHP 167
             YEG H HP
Sbjct:   271 YEGQHTHP 278

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 73/157 (46%), Positives = 93/157 (59%)

Query:    19 YLFTP-SIPSSSMQPATLEPQVLPEIDWVSLLSAQSTDHNMMESTS----HLNPENG--- 70
             + F+P S P  S+ P+   P  L       ++S+ S +    E+T+     +    G   
Sbjct:    40 FKFSPYSSPFQSVSPSVNNPY-LNLTSNSPVVSSSSNEGEPKENTNDKSDQMEDNEGDLH 98

Query:    71 GGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPR 130
             G  +   Q  K+ K+KG   KK    R AF T+S  D L+DGYRWRKYGQKAVKNS YPR
Sbjct:    99 GVGESSKQLTKQGKKKGE--KKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPR 156

Query:   131 SYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 167
             SYYRCT   CNVKK+V+R  +D SIV+TTYEG HNHP
Sbjct:   157 SYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHP 193

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 73/159 (45%), Positives = 93/159 (58%)

Query:    10 SSPMSPQPNYLFTPSIPSSSMQPATLEPQVLPEIDWVSLLSAQSTDHNMMES-TSHLNPE 68
             +S +  +PN   T  + +      T E +V P     S  S+   DH   +S  S    E
Sbjct:    79 NSSIDQEPNRDVTNDVINGGACNET-ETRVSP-----SNSSSSEADHPGEDSGKSRRKRE 132

Query:    69 NGGGRDQQDQGCKENKRKGSRMKKATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLY 128
               G  DQ  +  K  K K + +KK   PR +F T+S  D L+DGYRWRKYGQKAVKNS Y
Sbjct:   133 LVGEEDQISK--KVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPY 190

Query:   129 PRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 167
             PRSYYRCT   CNVKK+V+R  +D ++V+TTYEG HNHP
Sbjct:   191 PRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHP 229

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GY11	WRK43_ARATH	No assigned EC number	0.7941	0.5425	0.9357	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	1e-37
smart00774	59	smart00774, WRKY, DNA binding domain	6e-35

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  123 bits (311), Expect = 1e-37
 Identities = 42/60 (70%), Positives = 44/60 (73%)

Query: 109 LDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPC 168
           LDDGY WRKYGQK VK S +PRSYYRCT   C VKKQV+R S D  IV  TYEG HNHP 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  116 bits (294), Expect = 6e-35
 Identities = 39/59 (66%), Positives = 43/59 (72%), Gaps = 1/59 (1%)

Query: 109 LDDGYRWRKYGQKAVKNSLYPRSYYRCTH-HTCNVKKQVQRLSKDTSIVVTTYEGIHNH 166
           LDDGY+WRKYGQK +K S YPRSYYRCT+   C  KKQVQR   D S+V  TYEG H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	93.73
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	93.16

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=2.6e-33  Score=196.87  Aligned_cols=59  Identities=73%  Similarity=1.292  Sum_probs=52.5

Q ss_pred             CCCCcchhccCcccccCCCCCccceeccCCCcccccceeeecCCCCEEEEEEecccCCC
Q 046286          109 LDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP  167 (188)
Q Consensus       109 ~~DGy~WRKYGQK~Ikgs~~PRsYYRCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~  167 (188)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=5.2e-32  Score=190.57  Aligned_cols=58  Identities=66%  Similarity=1.157  Sum_probs=56.4

Q ss_pred             CCCCcchhccCcccccCCCCCccceeccC-CCcccccceeeecCCCCEEEEEEecccCC
Q 046286          109 LDDGYRWRKYGQKAVKNSLYPRSYYRCTH-HTCNVKKQVQRLSKDTSIVVTTYEGIHNH  166 (188)
Q Consensus       109 ~~DGy~WRKYGQK~Ikgs~~PRsYYRCt~-~gC~akKqVqr~~~D~~~~~ttY~G~HnH  166 (188)
                      ++|||+|||||||.|+|+++||+||||++ .||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 89999999999988999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.73  E-value=0.032  Score=36.69  Aligned_cols=49  Identities=27%  Similarity=0.584  Sum_probs=23.8

Q ss_pred             CCCCCcchhccCcccccCCCCCccceeccCC---CcccccceeeecCCCCEEEEEEecccCC
Q 046286          108 ILDDGYRWRKYGQKAVKNSLYPRSYYRCTHH---TCNVKKQVQRLSKDTSIVVTTYEGIHNH  166 (188)
Q Consensus       108 ~~~DGy~WRKYGQK~Ikgs~~PRsYYRCt~~---gC~akKqVqr~~~D~~~~~ttY~G~HnH  166 (188)
                      ++-|||.-++....      ....|++|+..   +|.|+=.+.  .+ .. .++...+.|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~-~~-~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AG-DG-RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE-----TT-EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CC-CC-EEEECCCccCC
Confidence            34588876664443      45679999985   899977766  22 33 33334489998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=93.16  E-value=0.08  Score=37.89  Aligned_cols=30  Identities=33%  Similarity=0.502  Sum_probs=25.8

Q ss_pred             CCcccccceeeecCCCCEEEEEEecccCCCC
Q 046286          138 HTCNVKKQVQRLSKDTSIVVTTYEGIHNHPC  168 (188)
Q Consensus       138 ~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~  168 (188)
                      .||+|+=.|-+.. |+...++.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            4899998888755 78888999999999985

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		3e-20
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		7e-20

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 49/68 (72%)
Query: 99  AFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVT 158
             QT S  D+LDDGYRWRKYGQK VK + YPRSYY+CT   C V+K V+R + D   VVT
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66
Query: 159 TYEGIHNH 166
           TYEG HNH
Sbjct: 67  TYEGKHNH 74

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 53/70 (75%)
Query: 97  RFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIV 156
           R    T++  DI++DGYRWRKYGQK+VK S YPRSYYRC+   C VKK V+R S DT ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 157 VTTYEGIHNH 166
           +TTYEG H+H
Sbjct: 62  ITTYEGKHDH 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-44
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-42

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  141 bits (358), Expect = 1e-44
 Identities = 43/75 (57%), Positives = 50/75 (66%)

Query: 93  ATRPRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKD 152
            +      QT S  D+LDDGYRWRKYGQK VK + YPRSYY+CT   C V+K V+R + D
Sbjct: 1   GSSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATD 60

Query: 153 TSIVVTTYEGIHNHP 167
              VVTTYEG HNH 
Sbjct: 61  PKAVVTTYEGKHNHD 75

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  136 bits (343), Expect = 2e-42
 Identities = 42/71 (59%), Positives = 53/71 (74%)

Query: 97  RFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIV 156
           R    T++  DI++DGYRWRKYGQK+VK S YPRSYYRC+   C VKK V+R S DT ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 157 VTTYEGIHNHP 167
           +TTYEG H+H 
Sbjct: 62  ITTYEGKHDHD 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=2.9e-36  Score=220.41  Aligned_cols=75  Identities=56%  Similarity=1.008  Sum_probs=71.7

Q ss_pred             CeeEEEecCCCCCCCCCcchhccCcccccCCCCCccceeccCCCcccccceeeecCCCCEEEEEEecccCCCCcc
Q 046286           96 PRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEK  170 (188)
Q Consensus        96 pr~~~~t~s~~~~~~DGy~WRKYGQK~Ikgs~~PRsYYRCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~~~  170 (188)
                      .|++|+|.+..++++|||+|||||||.|||+++||+||||++.||+|+|+|||+++|+.+++|||+|.|||+.+.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            378999999999999999999999999999999999999999999999999999999999999999999998763

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=3.4e-36  Score=221.07  Aligned_cols=74  Identities=58%  Similarity=0.979  Sum_probs=68.3

Q ss_pred             CeeEEEecCCCCCCCCCcchhccCcccccCCCCCccceeccCCCcccccceeeecCCCCEEEEEEecccCCCCc
Q 046286           96 PRFAFQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCE  169 (188)
Q Consensus        96 pr~~~~t~s~~~~~~DGy~WRKYGQK~Ikgs~~PRsYYRCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~~  169 (188)
                      .+++|+|.++.++++|||+|||||||.|||+++||+||||++.+|+|+|+|||+++|+.+++|||+|.|||+.+
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999865

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	1e-33

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  112 bits (281), Expect = 1e-33
 Identities = 43/67 (64%), Positives = 49/67 (73%)

Query: 101 QTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTY 160
           QT S  D+LDDGYRWRKYGQK VK + YPRSYY+CT   C V+K V+R + D   VVTTY
Sbjct: 2   QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 61

Query: 161 EGIHNHP 167
           EG HNH 
Sbjct: 62  EGKHNHD 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.2e-36  Score=215.55  Aligned_cols=70  Identities=61%  Similarity=1.055  Sum_probs=66.4

Q ss_pred             EEecCCCCCCCCCcchhccCcccccCCCCCccceeccCCCcccccceeeecCCCCEEEEEEecccCCCCc
Q 046286          100 FQTRSADDILDDGYRWRKYGQKAVKNSLYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCE  169 (188)
Q Consensus       100 ~~t~s~~~~~~DGy~WRKYGQK~Ikgs~~PRsYYRCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnH~~~  169 (188)
                      ++|.++.++++|||+|||||||.|+|+++||+||||++.||+|+|+|||+++|+.+++|||+|+|||+.+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            3567888999999999999999999999999999999999999999999999999999999999999865