Citrus Sinensis ID: 046291

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKSAGGADEDDED
cccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHcccccHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEccccEEEEccccccEEEEccccccccccccHHHHHHHHHHHHHccccccccccc
cccccccccccEEccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccEEEccEEEEcccEEEEEcccccEEcccccccccccccHHHHHHHHHHHHccccccccHcccc
MVHVSFYrnygktfkkprrpyeKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLltldekdprrIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHirvgrqivnipsFLVRVDAQNHVGVSLtssltqtgrpgrvKRKAQKAAAKksaggadedded
mvhvsfyrnygktfkkprrpyekerLDAELRlvgsfglrckrELWRVQYALSRIRNAArdlltldekdprriFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVsltssltqtgrpgrvkrKAQKaaakksaggadedded
MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVkrkaqkaaakksaGGADEDDED
*****FYRNYGKTF**********RLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSL***********************************
************TFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYA*********************IFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVS************************************
MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSS********************************
****SFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSL*******************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKKSAGGADEDDED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query197 2.2.26 [Sep-21-2011]
Q9FLF0197 40S ribosomal protein S9- yes no 0.949 0.949 0.803 2e-85
Q9LXG1198 40S ribosomal protein S9- no no 0.949 0.944 0.765 7e-83
P14132185 40S ribosomal protein S9 yes no 0.923 0.983 0.639 5e-66
Q20228189 40S ribosomal protein S9 yes no 0.913 0.952 0.628 1e-61
P52810190 40S ribosomal protein S9 yes no 0.949 0.984 0.613 1e-61
P29314194 40S ribosomal protein S9 yes no 0.934 0.948 0.627 8e-61
A9L913194 40S ribosomal protein S9 N/A no 0.934 0.948 0.627 8e-61
Q6ZWN5194 40S ribosomal protein S9 yes no 0.934 0.948 0.627 8e-61
P46781194 40S ribosomal protein S9 yes no 0.934 0.948 0.627 8e-61
A6QLG5194 40S ribosomal protein S9 yes no 0.934 0.948 0.627 8e-61
>sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1 Back     alignment and function desciption
 Score =  315 bits (806), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/188 (80%), Positives = 173/188 (92%), Gaps = 1/188 (0%)

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARD 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAEL+LVG +GLRCKRELWRVQY LSRIRNAAR+
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGL 120
           LLTLDEK+PRRIFEG+ALLRRM RYGLL+ TQNKLDYVLALTVE+FLERRLQT+VFK+G+
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQ 180
           AKSIHHARVLI+Q+HIRVGRQ+VNIPSF+VRV++Q HV  SLTS     GRPGRVKR+ +
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFG-GGRPGRVKRRNE 179

Query: 181 KAAAKKSA 188
           +A AKK++
Sbjct: 180 RAGAKKAS 187

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LXG1|RS91_ARATH 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1 Back     alignment and function description
>sp|P14132|RS9_DICDI 40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=1 SV=1 Back     alignment and function description
>sp|Q20228|RS9_CAEEL 40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=3 SV=1 Back     alignment and function description
>sp|P52810|RS9_PODAS 40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1 Back     alignment and function description
>sp|P29314|RS9_RAT 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4 Back     alignment and function description
>sp|A9L913|RS9_PAPAN 40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1 Back     alignment and function description
>sp|Q6ZWN5|RS9_MOUSE 40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3 Back     alignment and function description
>sp|P46781|RS9_HUMAN 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3 Back     alignment and function description
>sp|A6QLG5|RS9_BOVIN 40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
388517295197 unknown [Lotus japonicus] 0.949 0.949 0.840 5e-88
255629938222 unknown [Glycine max] 0.939 0.833 0.844 3e-87
255540985197 40S ribosomal protein S9, putative [Rici 0.949 0.949 0.819 4e-86
224140087197 predicted protein [Populus trichocarpa] 0.949 0.949 0.840 6e-86
255552894196 40S ribosomal protein S9, putative [Rici 0.944 0.948 0.828 6e-86
53793731197 40S ribosomal protein S9 , putative [Sol 0.949 0.949 0.829 7e-86
224142783197 predicted protein [Populus trichocarpa] 0.949 0.949 0.840 9e-86
76573325197 unknown [Solanum tuberosum] 0.949 0.949 0.824 2e-85
356508574197 PREDICTED: 40S ribosomal protein S9-2-li 0.913 0.913 0.850 3e-85
356562820197 PREDICTED: 40S ribosomal protein S9-2-li 0.913 0.913 0.845 5e-85
>gi|388517295|gb|AFK46709.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
 Score =  328 bits (842), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 158/188 (84%), Positives = 177/188 (94%), Gaps = 1/188 (0%)

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARD 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAEL+LVG +GLRCKRELWRVQYALSRIRN AR+
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARN 60

Query: 61  LLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGL 120
           LLTLDEK+PRRIFEG+ALLRRMFRYGLL+ TQNKLDYVLALTVE+FLERRLQT+VFK+G+
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQ 180
           AKSIHHARVLI+Q+HIRVGRQ+VNIPSF+VRVD+Q H+  SLTS L   GRPGRVKRK Q
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLG-GGRPGRVKRKNQ 179

Query: 181 KAAAKKSA 188
           KAAA+K++
Sbjct: 180 KAAAEKAS 187

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255629938|gb|ACU15321.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255540985|ref|XP_002511557.1| 40S ribosomal protein S9, putative [Ricinus communis] gi|223550672|gb|EEF52159.1| 40S ribosomal protein S9, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224140087|ref|XP_002323418.1| predicted protein [Populus trichocarpa] gi|118482457|gb|ABK93151.1| unknown [Populus trichocarpa] gi|118489211|gb|ABK96412.1| unknown [Populus trichocarpa x Populus deltoides] gi|222868048|gb|EEF05179.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255552894|ref|XP_002517490.1| 40S ribosomal protein S9, putative [Ricinus communis] gi|223543501|gb|EEF45032.1| 40S ribosomal protein S9, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|53793731|gb|AAU93594.1| 40S ribosomal protein S9 , putative [Solanum demissum] Back     alignment and taxonomy information
>gi|224142783|ref|XP_002324730.1| predicted protein [Populus trichocarpa] gi|118483013|gb|ABK93418.1| unknown [Populus trichocarpa] gi|118487957|gb|ABK95800.1| unknown [Populus trichocarpa] gi|118489692|gb|ABK96647.1| unknown [Populus trichocarpa x Populus deltoides] gi|222866164|gb|EEF03295.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|76573325|gb|ABA46767.1| unknown [Solanum tuberosum] Back     alignment and taxonomy information
>gi|356508574|ref|XP_003523030.1| PREDICTED: 40S ribosomal protein S9-2-like [Glycine max] gi|356516778|ref|XP_003527070.1| PREDICTED: 40S ribosomal protein S9-2-like [Glycine max] gi|255640554|gb|ACU20562.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356562820|ref|XP_003549666.1| PREDICTED: 40S ribosomal protein S9-2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
TAIR|locus:2178082197 AT5G39850 [Arabidopsis thalian 0.994 0.994 0.767 9e-77
TAIR|locus:2150976198 AT5G15200 [Arabidopsis thalian 0.994 0.989 0.725 1.1e-73
ASPGD|ASPL0000071451193 AN4803 [Emericella nidulans (t 0.944 0.963 0.631 6.4e-60
DICTYBASE|DDB_G0289877185 rps9 "40S ribosomal protein S9 0.837 0.891 0.680 2.5e-58
ZFIN|ZDB-GENE-010724-15194 rps9 "ribosomal protein S9" [D 0.934 0.948 0.616 9.6e-57
FB|FBgn0010408195 RpS9 "Ribosomal protein S9" [D 0.944 0.953 0.611 1.2e-56
UNIPROTKB|A6QLG5194 RPS9 "40S ribosomal protein S9 0.934 0.948 0.605 4.2e-56
UNIPROTKB|E2R8R8194 RPS9 "Uncharacterized protein" 0.934 0.948 0.605 4.2e-56
UNIPROTKB|P46781194 RPS9 "40S ribosomal protein S9 0.934 0.948 0.605 4.2e-56
UNIPROTKB|A9L913194 RPS9 "40S ribosomal protein S9 0.934 0.948 0.605 4.2e-56
TAIR|locus:2178082 AT5G39850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 152/198 (76%), Positives = 170/198 (85%)

Query:     1 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARD 60
             MV+V FYRNYGKTFKKPRRPYEKERLDAEL+LVG +GLRCKRELWRVQY LSRIRNAAR+
Sbjct:     1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query:    61 LLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGL 120
             LLTLDEK+PRRIFEG+ALLRRM RYGLL+ TQNKLDYVLALTVE+FLERRLQT+VFK+G+
Sbjct:    61 LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query:   121 AKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVXXXXX 180
             AKSIHHARVLI+Q+HIRVGRQ+VNIPSF+VRV++Q HV  SLTS     GRPGRV     
Sbjct:   121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGG-GRPGRVKRRNE 179

Query:   181 XXXXXXXXGG-ADEDDED 197
                     GG  DEDDE+
Sbjct:   180 RAGAKKASGGDGDEDDEE 197
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0015935 "small ribosomal subunit" evidence=IEA
GO:0019843 "rRNA binding" evidence=IEA
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2150976 AT5G15200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000071451 AN4803 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289877 rps9 "40S ribosomal protein S9" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010724-15 rps9 "ribosomal protein S9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0010408 RpS9 "Ribosomal protein S9" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLG5 RPS9 "40S ribosomal protein S9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8R8 RPS9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P46781 RPS9 "40S ribosomal protein S9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A9L913 RPS9 "40S ribosomal protein S9" [Papio anubis (taxid:9555)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B8GEG7RS4_METPENo assigned EC number0.40850.81210.8839yesno
Q97B95RS4_THEVONo assigned EC number0.37950.83240.82yesno
B6YSQ1RS4_THEONNo assigned EC number0.42680.81720.8944yesno
Q9LXG1RS91_ARATHNo assigned EC number0.76590.94920.9444nono
Q6ZWN5RS9_MOUSENo assigned EC number0.62700.93400.9484yesno
P05755RS9B_YEASTNo assigned EC number0.63150.86290.8717yesno
Q09757RS9A_SCHPONo assigned EC number0.66080.86290.8900yesno
P14132RS9_DICDINo assigned EC number0.63970.92380.9837yesno
O15612RS9_ENTHINo assigned EC number0.52840.89340.9513N/Ano
P29314RS9_RATNo assigned EC number0.62700.93400.9484yesno
Q20228RS9_CAEELNo assigned EC number0.62840.91370.9523yesno
Q9FLF0RS92_ARATHNo assigned EC number0.80310.94920.9492yesno
A6QLG5RS9_BOVINNo assigned EC number0.62700.93400.9484yesno
P46781RS9_HUMANNo assigned EC number0.62700.93400.9484yesno
A9L913RS9_PAPANNo assigned EC number0.62700.93400.9484N/Ano
A9A436RS4_NITMSNo assigned EC number0.35820.86290.8457yesno
Q6KZP7RS4_PICTONo assigned EC number0.39760.85780.9234yesno
O13516RS9A_YEASTNo assigned EC number0.61200.91370.9137yesno
A1RWT8RS4_THEPDNo assigned EC number0.42590.81210.9302yesno
P54020RS4_METJANo assigned EC number0.37270.84770.8930yesno
P52810RS9_PODASNo assigned EC number0.61370.94920.9842yesno
Q25555RS9_NAEFONo assigned EC number0.57690.92380.9784N/Ano
Q9HJD7RS4_THEACNo assigned EC number0.37820.93400.9246yesno
P55935RS9_DROMENo assigned EC number0.63530.91370.9230yesno
A6UPW5RS4_METVSNo assigned EC number0.35710.84260.9325yesno
P17959RS9_TRYBBNo assigned EC number0.58200.94920.9842N/Ano
O59675RS9B_SCHPONo assigned EC number0.66080.86290.8854yesno
Q8TVC0RS4_METKANo assigned EC number0.40350.84770.8978yesno
A0B9L2RS4_METTPNo assigned EC number0.37800.82230.8852yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
PLN00189194 PLN00189, PLN00189, 40S ribosomal protein S9; Prov 1e-118
PTZ00155181 PTZ00155, PTZ00155, 40S ribosomal protein S9; Prov 1e-98
TIGR01018162 TIGR01018, rpsD_arch, ribosomal protein S4(archaea 2e-60
PRK04051177 PRK04051, rps4p, 30S ribosomal protein S4P; Valida 2e-51
COG0522205 COG0522, RpsD, Ribosomal protein S4 and related pr 2e-28
pfam0016393 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N 5e-23
pfam0147948 pfam01479, S4, S4 domain 6e-11
PRK05327203 PRK05327, rpsD, 30S ribosomal protein S4; Validate 1e-10
TIGR01017200 TIGR01017, rpsD_bact, ribosomal protein S4, bacter 4e-09
cd0016570 cd00165, S4, S4/Hsp/ tRNA synthetase RNA-binding d 8e-09
CHL00113201 CHL00113, rps4, ribosomal protein S4; Reviewed 8e-08
smart0036360 smart00363, S4, S4 RNA-binding domain 8e-07
>gnl|CDD|177783 PLN00189, PLN00189, 40S ribosomal protein S9; Provisional Back     alignment and domain information 
 Score =  333 bits (855), Expect = e-118
 Identities = 158/197 (80%), Positives = 178/197 (90%), Gaps = 3/197 (1%)

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARD 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAEL+LVG +GLR KRELWRVQYALSRIRNAAR 
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRNKRELWRVQYALSRIRNAARM 60

Query: 61  LLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGL 120
           LLTLDEK+PRRIFEG+ALLRRM RYGLL+ +QNKLDYVLALTVE+FLERRLQT+VFK+G+
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQ 180
           AKSIHHARVLI+Q+HIRVG+QIVN+PSF+VRVD+Q H+  SLTS L   GRPGRVKRK Q
Sbjct: 121 AKSIHHARVLIRQRHIRVGKQIVNVPSFMVRVDSQKHIDFSLTSPLGG-GRPGRVKRKNQ 179

Query: 181 KAAAKKSAGGADEDDED 197
           KAA+    G  DE+DE+
Sbjct: 180 KAAS--GGGDGDEEDEE 194

Length = 194
>gnl|CDD|185484 PTZ00155, PTZ00155, 40S ribosomal protein S9; Provisional Back     alignment and domain information
>gnl|CDD|213577 TIGR01018, rpsD_arch, ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type) Back     alignment and domain information
>gnl|CDD|179730 PRK04051, rps4p, 30S ribosomal protein S4P; Validated Back     alignment and domain information
>gnl|CDD|223596 COG0522, RpsD, Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215762 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain Back     alignment and domain information
>gnl|CDD|201819 pfam01479, S4, S4 domain Back     alignment and domain information
>gnl|CDD|235411 PRK05327, rpsD, 30S ribosomal protein S4; Validated Back     alignment and domain information
>gnl|CDD|200066 TIGR01017, rpsD_bact, ribosomal protein S4, bacterial/organelle type Back     alignment and domain information
>gnl|CDD|238095 cd00165, S4, S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes Back     alignment and domain information
>gnl|CDD|177038 CHL00113, rps4, ribosomal protein S4; Reviewed Back     alignment and domain information
>gnl|CDD|214638 smart00363, S4, S4 RNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 197
PLN00189194 40S ribosomal protein S9; Provisional 100.0
PTZ00155181 40S ribosomal protein S9; Provisional 100.0
TIGR01018162 rpsD_arch ribosomal protein S4(archaeal type)/S9(e 100.0
PRK04051177 rps4p 30S ribosomal protein S4P; Validated 100.0
KOG3301183 consensus Ribosomal protein S4 [Translation, ribos 100.0
KOG4655181 consensus U3 small nucleolar ribonucleoprotein (sn 100.0
COG0522205 RpsD Ribosomal protein S4 and related proteins [Tr 99.97
CHL00113201 rps4 ribosomal protein S4; Reviewed 99.59
TIGR01017200 rpsD_bact ribosomal protein S4, bacterial/organell 99.54
PF0147948 S4: S4 domain; InterPro: IPR002942 Ribosomes are t 99.47
PRK05327203 rpsD 30S ribosomal protein S4; Validated 99.46
COG1189 245 Predicted rRNA methylase [Translation, ribosomal s 99.23
PRK10348133 ribosome-associated heat shock protein Hsp15; Prov 99.19
COG1188100 Ribosome-associated heat shock protein implicated 99.1
TIGR0298859 YaaA_near_RecF S4 domain protein YaaA. This small 98.94
TIGR00478 228 tly hemolysin TlyA family protein. Hemolysins are 98.9
cd0016570 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The 98.71
smart0036360 S4 S4 RNA-binding domain. 98.71
PF0016394 Ribosomal_S4: Ribosomal protein S4/S9 N-terminal d 98.65
TIGR03069257 PS_II_S4 photosystem II S4 domain protein. Members 98.23
COG1187 248 RsuA 16S rRNA uridine-516 pseudouridylate synthase 98.22
PLN00051267 RNA-binding S4 domain-containing protein; Provisio 98.17
PRK10700 289 23S rRNA pseudouridylate synthase B; Provisional 98.03
PRK10475 290 23S rRNA pseudouridine synthase F; Provisional 97.91
COG2302257 Uncharacterized conserved protein, contains S4-lik 97.83
PRK10839 232 16S rRNA pseudouridylate synthase A; Provisional 97.57
PRK1150770 ribosome-associated protein; Provisional 97.56
PRK11180 325 rluD 23S rRNA pseudouridine synthase D; Provisiona 97.54
TIGR00005 299 rluA_subfam pseudouridine synthase, RluA family. m 97.36
PF1327565 S4_2: S4 domain; PDB: 1P9K_A. 97.31
COG0564 289 RluA Pseudouridylate synthases, 23S RNA-specific [ 97.1
PRK11025 317 23S rRNA pseudouridylate synthase C; Provisional 96.93
COG250173 S4-like RNA binding protein [Replication, recombin 96.66
PRK13354410 tyrosyl-tRNA synthetase; Provisional 96.38
PRK05912408 tyrosyl-tRNA synthetase; Validated 96.08
PRK04313 237 30S ribosomal protein S4e; Validated 95.29
PTZ00118 262 40S ribosomal protein S4; Provisional 94.52
PTZ00223 273 40S ribosomal protein S4; Provisional 94.42
PLN00036 261 40S ribosomal protein S4; Provisional 94.42
COG1471 241 RPS4A Ribosomal protein S4E [Translation, ribosoma 93.6
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 93.29
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 87.54
KOG2623467 consensus Tyrosyl-tRNA synthetase [Translation, ri 87.24
>PLN00189 40S ribosomal protein S9; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-64  Score=422.92  Aligned_cols=184  Identities=83%  Similarity=1.268  Sum_probs=179.2

Q ss_pred             CcccCCcccccccccCCCCCCccccchHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q 046291            1 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLR   80 (197)
Q Consensus         1 ~~~~~~~~~~~k~~~~p~~pw~~~~~~~E~~~~~~YgLknK~E~~r~~~~l~kiR~~ar~L~~l~~~d~~r~~~~~~Ll~   80 (197)
                      ||++.+|++++|+|+||+|||+++++.+|.+++++|||+||+|||+|+++|++||++|+.|++++++|+++++++++||+
T Consensus         1 ~~~~~~~~~~~K~y~tP~~P~ek~Rl~~E~kli~kYgLknK~E~wky~~ll~kiRk~Ar~Ll~l~~~d~~r~~~~~~LL~   80 (194)
T PLN00189          1 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRNKRELWRVQYALSRIRNAARMLLTLDEKNPRRIFEGEALLR   80 (194)
T ss_pred             CCcccCCCCCCcccCCCCCchhhHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcchhhhhcchhHHhhhhhHHHHHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEe
Q 046291           81 RMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGV  160 (197)
Q Consensus        81 kL~~~Gli~~~~~~L~~~~~l~~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~  160 (197)
                      +||+||||++++.+|++|++|++++|||+|||++|+++|||+|+++|++||.||||+|||++|++|||+|++++|++|+|
T Consensus        81 kL~~~GlL~~~~~~Ld~vl~Ltvs~~leRRL~~vv~r~g~a~si~~ARqlI~hgHI~V~~~~V~~Ps~~V~~~~e~~Itw  160 (194)
T PLN00189         81 RMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSFMVRVDSQKHIDF  160 (194)
T ss_pred             HHHHhCCccccccCHHHHhhccHHHHHHhhhceeeeecCCcCCHHHHHHheeCCCEeECCEEEecCcEEEecCCEEEEEE
Confidence            99999999767789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcccCCCchhhhhhhhHHHhh
Q 046291          161 SLTSSLTQTGRPGRVKRKAQKAAAK  185 (197)
Q Consensus       161 ~~~s~~vs~~~~~r~~~~~~~~~~~  185 (197)
                      .++|+|. +++|+|++||+++++++
T Consensus       161 ~~~Sp~~-~~~p~r~~~k~~~~~~~  184 (194)
T PLN00189        161 SLTSPLG-GGRPGRVKRKNQKAASG  184 (194)
T ss_pred             ecCCccc-CCChhHHHHHHHHhccC
Confidence            9999999 59999999999987643

>PTZ00155 40S ribosomal protein S9; Provisional Back     alignment and domain information
>TIGR01018 rpsD_arch ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type) Back     alignment and domain information
>PRK04051 rps4p 30S ribosomal protein S4P; Validated Back     alignment and domain information
>KOG3301 consensus Ribosomal protein S4 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4655 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification] Back     alignment and domain information
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00113 rps4 ribosomal protein S4; Reviewed Back     alignment and domain information
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type Back     alignment and domain information
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05327 rpsD 30S ribosomal protein S4; Validated Back     alignment and domain information
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional Back     alignment and domain information
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA Back     alignment and domain information
>TIGR00478 tly hemolysin TlyA family protein Back     alignment and domain information
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes Back     alignment and domain information
>smart00363 S4 S4 RNA-binding domain Back     alignment and domain information
>PF00163 Ribosomal_S4: Ribosomal protein S4/S9 N-terminal domain; InterPro: IPR001912 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR03069 PS_II_S4 photosystem II S4 domain protein Back     alignment and domain information
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN00051 RNA-binding S4 domain-containing protein; Provisional Back     alignment and domain information
>PRK10700 23S rRNA pseudouridylate synthase B; Provisional Back     alignment and domain information
>PRK10475 23S rRNA pseudouridine synthase F; Provisional Back     alignment and domain information
>COG2302 Uncharacterized conserved protein, contains S4-like domain [Function unknown] Back     alignment and domain information
>PRK10839 16S rRNA pseudouridylate synthase A; Provisional Back     alignment and domain information
>PRK11507 ribosome-associated protein; Provisional Back     alignment and domain information
>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional Back     alignment and domain information
>TIGR00005 rluA_subfam pseudouridine synthase, RluA family Back     alignment and domain information
>PF13275 S4_2: S4 domain; PDB: 1P9K_A Back     alignment and domain information
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional Back     alignment and domain information
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair] Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK04313 30S ribosomal protein S4e; Validated Back     alignment and domain information
>PTZ00118 40S ribosomal protein S4; Provisional Back     alignment and domain information
>PTZ00223 40S ribosomal protein S4; Provisional Back     alignment and domain information
>PLN00036 40S ribosomal protein S4; Provisional Back     alignment and domain information
>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
3iz6_C195 Localization Of The Small Subunit Ribosomal Protein 2e-72
3izb_C197 Localization Of The Small Subunit Ribosomal Protein 7e-59
2xzm_D181 Crystal Structure Of The Eukaryotic 40s Ribosomal S 3e-58
3jyv_D158 Structure Of The 40s Rrna And Proteins And PE TRNA 2e-57
3zey_6190 High-resolution Cryo-electron Microscopy Structure 1e-56
1s1h_D179 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-53
3j20_D180 Promiscuous Behavior Of Proteins In Archaeal Riboso 4e-21
1i94_D208 Crystal Structures Of The Small Ribosomal Subunit W 9e-05
1fjg_D209 Structure Of The Thermus Thermophilus 30s Ribosomal 1e-04
1fka_D209 Structure Of Functionally Activated Small Ribosomal 1e-04
3bbn_D201 Homology Model For The Spinach Chloroplast 30s Subu 2e-04
2gy9_D204 Structure Of The 30s Subunit Of A Pre-Translocation 7e-04
1p6g_D205 Real Space Refined Coordinates Of The 30s Subunit F 7e-04
1vs5_D206 Crystal Structure Of The Bacterial Ribosome From Es 7e-04
>pdb|3IZ6|C Chain C, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 195 Back     alignment and structure 
Iteration: 1

 Score =  267 bits (683), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/170 (78%), Positives = 149/170 (87%), Gaps = 3/170 (1%)
Query: 8   RNYGKTF--KKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLD 65
           R Y KT+  KKPRRPYEKERLDAEL+LVG +GLRCKRELWRVQYALSRIRN AR LLTLD
Sbjct: 6   RTYSKTYSTKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLD 65
Query: 66  EKDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIH 125
           EK+PRRIFEG+ALLRRM RYGLL   QNKLDYVLALTVE+FL RRLQT+VFKAG+AKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIH 125
Query: 126 HARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRV 175
           HARVLI+Q+HIRVGRQIVNIPSF+VRV+++ H+  SLTS     G PGRV
Sbjct: 126 HARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFG-GGPPGRV 174
>pdb|3IZB|C Chain C, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 197 Back     alignment and structure
>pdb|2XZM|D Chain D, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 181 Back     alignment and structure
>pdb|3JYV|D Chain D, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 158 Back     alignment and structure
>pdb|3ZEY|6 Chain 6, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 190 Back     alignment and structure
>pdb|1S1H|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 179 Back     alignment and structure
>pdb|3J20|D Chain D, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 180 Back     alignment and structure
>pdb|1I94|D Chain D, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 208 Back     alignment and structure
>pdb|1FJG|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 209 Back     alignment and structure
>pdb|1FKA|D Chain D, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 209 Back     alignment and structure
>pdb|3BBN|D Chain D, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 201 Back     alignment and structure
>pdb|2GY9|D Chain D, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 204 Back     alignment and structure
>pdb|1P6G|D Chain D, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 205 Back     alignment and structure
>pdb|1VS5|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 206 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
3u5c_J197 40S ribosomal protein S9-A; translation, ribosome, 7e-62
2xzm_D181 Ribosomal protein S4 containing protein; ribosome, 3e-61
3iz6_C195 40S ribosomal protein S9 (S4P); eukaryotic ribosom 3e-58
2cqj_A71 BRMS2, U3 small nucleolar ribonucleoprotein protei 5e-27
2vqe_D209 30S ribosomal protein S4; tRNA-binding, rRNA-bindi 2e-10
1c05_A159 Ribosomal protein S4 delta 41; two subdomains, uni 3e-10
3r8n_D205 30S ribosomal protein S4; protein biosynthesis, RN 3e-10
3bbn_D201 Ribosomal protein S4; small ribosomal subunit, spi 2e-09
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D* Length = 197 Back     alignment and structure
 Score =  189 bits (482), Expect = 7e-62
 Identities = 114/191 (59%), Positives = 142/191 (74%), Gaps = 1/191 (0%)

Query: 7   YRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDE 66
            R Y KT+  P+RPYE  RLDAEL+L G FGL+ K+E++R+ + LS+IR AARDLLT DE
Sbjct: 5   PRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDE 64

Query: 67  KDPRRIFEGQALLRRMFRYGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHH 126
           KDP+R+FEG AL+RR+ R G+L   + KLDYVLAL VE FLERRLQT V+K GLAKS+HH
Sbjct: 65  KDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHH 124

Query: 127 ARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTSSLTQTGRPGRVKRKAQKAAAKK 186
           ARVLI Q+HI VG+QIVNIPSF+VR+D++ H+  + TS      RPGRV R+     A+ 
Sbjct: 125 ARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFG-GARPGRVARRNAARKAEA 183

Query: 187 SAGGADEDDED 197
           S   ADE DE 
Sbjct: 184 SGEAADEADEA 194
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D Length = 181 Back     alignment and structure
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 195 Back     alignment and structure
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ... Length = 209 Back     alignment and structure
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C Length = 159 Back     alignment and structure
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 201 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
3u5c_J197 40S ribosomal protein S9-A; translation, ribosome, 100.0
3iz6_C195 40S ribosomal protein S9 (S4P); eukaryotic ribosom 100.0
2xzm_D181 Ribosomal protein S4 containing protein; ribosome, 100.0
3j20_D180 30S ribosomal protein S4P; archaea, archaeal, KINK 100.0
2cqj_A71 BRMS2, U3 small nucleolar ribonucleoprotein protei 99.8
3bbn_D201 Ribosomal protein S4; small ribosomal subunit, spi 99.65
3r8n_D205 30S ribosomal protein S4; protein biosynthesis, RN 99.63
2vqe_D209 30S ribosomal protein S4; tRNA-binding, rRNA-bindi 99.58
1c05_A159 Ribosomal protein S4 delta 41; two subdomains, uni 99.57
3hp7_A 291 Hemolysin, putative; structural genomics, APC64019 99.07
1p9k_A79 ORF, hypothetical protein; alfal motif, RNA-bindin 98.93
1dm9_A133 Hypothetical 15.5 KD protein in MRCA-PCKA intergen 98.86
2k6p_A92 Uncharacterized protein HP_1423; alpha-L motif, RN 98.68
3dh3_A 290 Ribosomal large subunit pseudouridine synthase F; 98.2
1vio_A 243 Ribosomal small subunit pseudouridine synthase A; 98.19
1ksk_A 234 Ribosomal small subunit pseudouridine synthase A; 98.16
3j20_E 243 30S ribosomal protein S4E; archaea, archaeal, KINK 97.88
1v9f_A 325 Ribosomal large subunit pseudouridine synthase D; 97.84
3kbg_A 213 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR2 97.82
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 96.86
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 96.68
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 96.64
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 96.07
2ktl_A164 Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA s 96.03
3u5c_E 261 RP5, S7, YS6, 40S ribosomal protein S4-A; translat 92.92
2xzm_W 260 40S ribosomal protein S4; ribosome, translation; 3 91.86
3iz6_D 265 40S ribosomal protein S4 (S4E); eukaryotic ribosom 91.23
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D* Back     alignment and structure
Probab=100.00  E-value=9.5e-65  Score=423.95  Aligned_cols=191  Identities=60%  Similarity=0.974  Sum_probs=178.1

Q ss_pred             CCcccccccccCCCCCCccccchHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH
Q 046291            5 SFYRNYGKTFKKPRRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFR   84 (197)
Q Consensus         5 ~~~~~~~k~~~~p~~pw~~~~~~~E~~~~~~YgLknK~E~~r~~~~l~kiR~~ar~L~~l~~~d~~r~~~~~~Ll~kL~~   84 (197)
                      ++|++++|+|.||+|||+++++.+|.++|++|||+||+|||+|+++|++||++|+.|++|+++||+|++++++||++||+
T Consensus         3 ~~~~~~~k~~~tP~~p~~~~r~~~E~~l~~~YgL~nKrE~wr~~~~l~~iR~~Ar~Ll~l~~~dp~r~~~~~~LL~kL~~   82 (197)
T 3u5c_J            3 RAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVR   82 (197)
T ss_dssp             CCCCCCCCSCCCCSSSCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccCCCCCchhHHhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhhhhcchhHHhhhhhHHHHHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEeccCC
Q 046291           85 YGLLEATQNKLDYVLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTS  164 (197)
Q Consensus        85 ~Gli~~~~~~L~~~~~l~~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~~~~s  164 (197)
                      |||+++++++|++|++|++++||++|||++|+++|||+||++|++||.||||+|||++|++|||.|.++++++|+|.+.|
T Consensus        83 ~Gil~~~~~~L~~v~~l~~~~~le~RLD~~L~r~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~s  162 (197)
T 3u5c_J           83 VGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS  162 (197)
T ss_dssp             HTSSCGGGCSSHHHHHCCHHHHHTTSHHHHHHHSSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSSS
T ss_pred             cCCCCCcccChhhhhcccHHHHHHHHHHHHHHHccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCCC
Confidence            99998778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCchhhhhhhhHHHhhhcCCCCCCCcC
Q 046291          165 SLTQTGRPGRVKRKAQKAAAKKSAGGADEDDE  196 (197)
Q Consensus       165 ~~vs~~~~~r~~~~~~~~~~~~~~~~~~~~~~  196 (197)
                      +|| .++||||+|||++++++++||++|+|||
T Consensus       163 pyv-s~~~gr~~rk~~~~~~~~~~~~~~~~~~  193 (197)
T 3u5c_J          163 PFG-GARPGRVARRNAARKAEASGEAADEADE  193 (197)
T ss_dssp             SSS-SSCCCHHHHHHHHHHHHHTCC-------
T ss_pred             CCc-CCCchhHHHHHHHhhcccCCCCCccccc
Confidence            999 5699999999999987666655555544
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D Back     alignment and structure
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ... Back     alignment and structure
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C Back     alignment and structure
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} Back     alignment and structure
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6 Back     alignment and structure
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A Back     alignment and structure
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} Back     alignment and structure
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} Back     alignment and structure
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5 Back     alignment and structure
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* Back     alignment and structure
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A Back     alignment and structure
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4} Back     alignment and structure
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E Back     alignment and structure
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W Back     alignment and structure
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 197
d1c06a_159 d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stear 8e-06
d2gy9d1204 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherich 2e-05
d1vioa258 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-te 4e-04
d2uubd1208 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus t 0.001
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]} Length = 159 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.7 bits (98), Expect = 8e-06
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 105 SFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVR 151
             LE RL  +V++ GLA++   AR L+   HI V    VNIPS+ V+
Sbjct: 47  ILLESRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVK 93
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 58 Back     information, alignment and structure
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
d2gy9d1204 Ribosomal protein S4 {Escherichia coli [TaxId: 562 99.84
d1c06a_159 Ribosomal protein S4 {Bacillus stearothermophilus 99.83
d2uubd1208 Ribosomal protein S4 {Thermus thermophilus [TaxId: 99.83
d1dm9a_104 Heat shock protein 15 kD {Escherichia coli [TaxId: 99.43
d1kska359 Pseudouridine synthase RsuA N-terminal domain {Esc 99.35
d1vioa258 Pseudouridine synthase RsuA N-terminal domain {Hae 99.34
d1p9ka_79 Hypothetical protein YbcJ {Escherichia coli [TaxId 99.18
d1h3fa281 Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 98.43
d1jh3a_99 Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 98.08
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3e-22  Score=166.10  Aligned_cols=117  Identities=22%  Similarity=0.337  Sum_probs=94.2

Q ss_pred             CCCCccccchHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHhcchhhhhcchhH
Q 046291           18 RRPYEKERLDAELRLVGSFGLRCKRELWRVQYALSRIRNAARDLLTLDEKDPRRIFEGQALLRRMFRYGLLEATQNKLDY   97 (197)
Q Consensus        18 ~~pw~~~~~~~E~~~~~~YgLknK~E~~r~~~~l~kiR~~ar~L~~l~~~d~~r~~~~~~Ll~kL~~~Gli~~~~~~L~~   97 (197)
                      ++|+.+..+..-...++.||++-.+            ++.++.++++.|+++.+.+..+.     ..-|..+        
T Consensus        31 ~~~~~PG~hg~~~~k~S~yg~qL~E------------KQklr~~YGi~EkQ~~~~~~~a~-----~~~g~tg--------   85 (204)
T d2gy9d1          31 KIEQAPGQHGARKPRLSDYGVQLRE------------KQKVRRIYGVLERQFRNYYKEAA-----RLKGNTG--------   85 (204)
T ss_dssp             TCCSCSSSSSSSCCCCCHHHHHHHH------------HHHHHHHHTCCHHHHHHHHHHHH-----HSSSCHH--------
T ss_pred             cccCCCCCCCCCCCcccHHHHHHHH------------HHHHHHhcCCcHHHHHHHHHHHH-----HcCCcHH--------
Confidence            4555566555445678899998555            67889999999999887776665     3445443        


Q ss_pred             HhhhhhHHHHHhhhhhhHhhhccccCHHHHHHHHHcCCeeeCCEEeccCceeeecCCeeeEEeccCC
Q 046291           98 VLALTVESFLERRLQTVVFKAGLAKSIHHARVLIKQKHIRVGRQIVNIPSFLVRVDAQNHVGVSLTS  164 (197)
Q Consensus        98 ~~~l~~~~~lerRLD~~L~~~gla~Sr~~Ar~lI~~G~V~Vng~~V~kPs~~V~~~de~~I~~~~~s  164 (197)
                         -++..+||+|||.+|+++|||.|+.+|||||.||||.|||+.|++|||.|++||+  |++.+.+
T Consensus        86 ---~~l~~~LE~RLDnvv~R~gfa~t~~~ARQ~v~Hghi~VNgk~VnIPSy~vk~GDv--Isvkeks  147 (204)
T d2gy9d1          86 ---ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDV--VSIREKA  147 (204)
T ss_dssp             ---HHHHHHHTTBHHHHHHHHTSSSSHHHHHHHHHTTCEEESSSBCCCTTCBCCTTCB--EEECTTG
T ss_pred             ---HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhcceecCCEEEEeccEeecCCCE--EEeccch
Confidence               2366999999999999999999999999999999999999999999999999985  5655544
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure