Citrus Sinensis ID: 046294

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNWKKDFSWY
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHcccccEEcccEEEEEEEcccccccccEEEEEEEcccccccEEEccccEEEEEEEEcccccEEEEEEEEcccEEEEEEEEEEcccccccccccEEEEEEEccEEEEEcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccEEEEEEEEccccccccEEEccccEEEEEEEEcccccEEEEEEEEccccEEEEEEEEEcccccccccccEEEEEEEcccEEEEcccccEEEEcccc
Coil and Loop (DISEMBL)
MKTLNSILLIFCLAIGIIFMsvlqpqhfygveYDVRVINGFTNNSSLALVIWCSseegdmggralqagddygwrlrtkiwgttdfmctmkwdqkrrrfhafkvprdslrcnlfrkcswlvkedgfyfsndevnwkkdfswy
Flexible Loop (DISEMBL)
MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHafkvprdslrcnlfRKCSWLVKedgfyfsndevnwkkdfswy
Low Complexity Region (SEG)
MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNWKKDFSWY
Disordered region (IsUnstruct)
****NSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNWKKDFS**
Disordered Region (DISOPRED)
**TLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNWKKDFSWY
Disordered Region (DISEMBL)
MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNWKKDFSWY
Disordered Region (DISPRO)
MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNWKKDFSWY
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNWKKDFSWY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
224075585	141	predicted protein [Populus trichocarpa]	0.992	0.992	0.742	5e-57
224053461	141	predicted protein [Populus trichocarpa]	0.992	0.992	0.707	2e-53
297741906	141	unnamed protein product [Vitis vinifera]	0.992	0.992	0.685	9e-51
225433397	407	PREDICTED: uncharacterized protein LOC10	0.879	0.304	0.661	4e-46
147836970	498	hypothetical protein VITISV_017182 [Viti	0.879	0.248	0.661	1e-45
449432460	145	PREDICTED: uncharacterized protein LOC10	0.992	0.965	0.608	5e-45
449442499	123	PREDICTED: uncharacterized protein LOC10	0.858	0.983	0.666	2e-42
15229572	147	self-incompatibility S1 family protein [	0.950	0.911	0.604	2e-40
297795427	133	hypothetical protein ARALYDRAFT_331219 [	0.929	0.984	0.614	7e-40
297831226	147	hypothetical protein ARALYDRAFT_898978 [	0.879	0.843	0.626	5e-39

>gi|224075585|ref|XP_002304696.1| predicted protein [Populus trichocarpa] gi|222842128|gb|EEE79675.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 104/140 (74%), Positives = 117/140 (83%)

Query: 1   MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDM 60
           MK L +I L+  LAIGIIFMS+ QP++FYG+EYDVRVINGF NNSSL LVIWCSS   D+
Sbjct: 1   MKVLTNIFLVASLAIGIIFMSIYQPEYFYGLEYDVRVINGFKNNSSLPLVIWCSSNNDDL 60

Query: 61  GGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLV 120
           GGRALQ GDD+ W L+T  WGTT F+CTMKWD  RR+F AFKVPRD  RC+LFRKCSW V
Sbjct: 61  GGRALQEGDDFSWSLKTNFWGTTHFLCTMKWDAMRRKFDAFKVPRDLQRCSLFRKCSWSV 120

Query: 121 KEDGFYFSNDEVNWKKDFSW 140
           +EDGFYFSNDEVNWKKDFSW
Sbjct: 121 REDGFYFSNDEVNWKKDFSW 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053461|ref|XP_002297827.1| predicted protein [Populus trichocarpa] gi|222845085|gb|EEE82632.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 113/140 (80%)

Query: 1   MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDM 60
           MK L  I L+  LAIG+IFMS+ QP++F G+EYDVRVINGFTNNSSL LVIWCSS+  D+
Sbjct: 1   MKVLTKIFLVVSLAIGMIFMSIYQPEYFCGLEYDVRVINGFTNNSSLPLVIWCSSDSDDL 60

Query: 61  GGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLV 120
           GGRALQ GDD+ WRL+   W +  F CTMKWD  RR+F AFKVPRD  RC+ FR CSWLV
Sbjct: 61  GGRALQEGDDFSWRLQINFWCSNHFRCTMKWDAMRRKFDAFKVPRDLQRCSPFRMCSWLV 120

Query: 121 KEDGFYFSNDEVNWKKDFSW 140
           +EDGFYFSNDEVNWKKDFSW
Sbjct: 121 REDGFYFSNDEVNWKKDFSW 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741906|emb|CBI33341.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (519), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 109/140 (77%)

Query: 1   MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDM 60
           MK L S LL+FC ++ II MS  Q Q F G  YDVRV+NGFT+NSSL LVIWCSS+  D+
Sbjct: 1   MKRLTSFLLMFCFSLCIILMSFRQSQFFNGTIYDVRVVNGFTDNSSLVLVIWCSSQHNDL 60

Query: 61  GGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLV 120
           GGRALQAGDD+ W L+T +W TT F CTMKWDQ+R  F AF+V RDS RC  FR C WLV
Sbjct: 61  GGRALQAGDDFSWSLKTNLWATTLFHCTMKWDQRRTSFEAFQVQRDSQRCAPFRTCFWLV 120

Query: 121 KEDGFYFSNDEVNWKKDFSW 140
           KEDGFYFSND+VNWKKDFSW
Sbjct: 121 KEDGFYFSNDQVNWKKDFSW 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433397|ref|XP_002283055.1| PREDICTED: uncharacterized protein LOC100252771 [Vitis vinifera]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 100/124 (80%)

Query: 17  IIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLR 76
           IIFMS+ Q ++F G EYDVR++NGFT+NSSLALVIWC+S+  D+GGRALQ GDD+ W ++
Sbjct: 284 IIFMSLKQSENFSGAEYDVRIVNGFTDNSSLALVIWCTSDNKDIGGRALQVGDDFSWSVK 343

Query: 77  TKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNWKK 136
           T +WG T F CTMKWD  R++F AF+V RD  RC   R C WLV+EDGFYFSND+VNWKK
Sbjct: 344 TNLWGATPFHCTMKWDATRKQFDAFQVQRDVQRCGPLRTCFWLVREDGFYFSNDQVNWKK 403

Query: 137 DFSW 140
           DFSW
Sbjct: 404 DFSW 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836970|emb|CAN63635.1| hypothetical protein VITISV_017182 [Vitis vinifera]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 100/124 (80%)

Query: 17  IIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLR 76
           IIFMS+ Q ++F G EYDVR++NGFT+NSSLALVIWC+S+  D+GGRALQ GDD+ W ++
Sbjct: 375 IIFMSLKQSENFSGAEYDVRIVNGFTDNSSLALVIWCTSDNKDIGGRALQVGDDFSWSVK 434

Query: 77  TKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNWKK 136
           T +WG T F CTMKWD  R++F AF+V RD  RC   R C WLV+EDGFYFSND+VNWKK
Sbjct: 435 TNLWGATPFHCTMKWDATRKQFDAFQVQRDVQRCGPLRTCFWLVREDGFYFSNDQVNWKK 494

Query: 137 DFSW 140
           DFSW
Sbjct: 495 DFSW 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432460|ref|XP_004134017.1| PREDICTED: uncharacterized protein LOC101218823 [Cucumis sativus] gi|449526433|ref|XP_004170218.1| PREDICTED: uncharacterized LOC101218823 [Cucumis sativus]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/143 (60%), Positives = 108/143 (75%), Gaps = 3/143 (2%)

Query: 1   MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDM 60
           MK L SIL++       +F+S+L  +  +G+EY+VRVINGFTNNSSL LVIWC+S++GD+
Sbjct: 3   MKILVSILMLIFFPFFTVFVSLLPAEQLFGIEYEVRVINGFTNNSSLPLVIWCASKDGDI 62

Query: 61  GGRALQAGDDYGWRLRTKIWGTT---DFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCS 117
           GGRALQ  DD+ W ++T  W TT    F CT+K D+ R+ F AFKVPRD  RC+  RKCS
Sbjct: 63  GGRALQEHDDFSWPVKTNFWITTTTSQFSCTVKLDRTRKSFDAFKVPRDIYRCSALRKCS 122

Query: 118 WLVKEDGFYFSNDEVNWKKDFSW 140
           WLV EDGFYFS+DEVNWKKDFSW
Sbjct: 123 WLVMEDGFYFSDDEVNWKKDFSW 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442499|ref|XP_004139019.1| PREDICTED: uncharacterized protein LOC101209275 [Cucumis sativus] gi|449531755|ref|XP_004172851.1| PREDICTED: uncharacterized protein LOC101227623 [Cucumis sativus]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 96/123 (78%), Gaps = 2/123 (1%)

Query: 20  MSVLQPQHFY--GVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRT 77
           M ++QP   Y  GV ++VRVINGF NNSSL LVIWCSS+E D+GGRALQ  DD+ W++ T
Sbjct: 1   MFIIQPDRLYLHGVVFEVRVINGFKNNSSLPLVIWCSSKENDLGGRALQEHDDFSWKVTT 60

Query: 78  KIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNWKKD 137
           K+W +  F CTMKWD KRR F AFKVPRD  RC  F+KCSWLV EDGFYFS+DE+NWKKD
Sbjct: 61  KLWKSNQFSCTMKWDAKRRSFDAFKVPRDFYRCGHFKKCSWLVTEDGFYFSSDEINWKKD 120

Query: 138 FSW 140
           F W
Sbjct: 121 FQW 123

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229572|ref|NP_189048.1| self-incompatibility S1 family protein [Arabidopsis thaliana] gi|9294675|dbj|BAB03024.1| unnamed protein product [Arabidopsis thaliana] gi|332643328|gb|AEE76849.1| self-incompatibility S1 family protein [Arabidopsis thaliana]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/139 (60%), Positives = 103/139 (74%), Gaps = 5/139 (3%)

Query: 7   ILLIFCL---AIGIIFMSVLQPQH-FYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGG 62
           ILL+F L   ++ IIF  +LQPQ  F G E+DVRVIN F +NSSL LVIWC+S +GD+GG
Sbjct: 8   ILLLFMLIAISLTIIFTLMLQPQTMFLGEEFDVRVINSFRDNSSLPLVIWCTSPQGDLGG 67

Query: 63  RALQAGDDYGWRLRTKIWG-TTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVK 121
           RALQ GDD+ W  +  +W    ++ CTMKWD KR++F AFKV RDS RC   +KCSW V+
Sbjct: 68  RALQEGDDFEWTAKIDLWSWMAEYTCTMKWDSKRKQFEAFKVSRDSNRCGSTKKCSWSVR 127

Query: 122 EDGFYFSNDEVNWKKDFSW 140
           EDGFYFS+DEV W KDFSW
Sbjct: 128 EDGFYFSSDEVYWTKDFSW 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795427|ref|XP_002865598.1| hypothetical protein ARALYDRAFT_331219 [Arabidopsis lyrata subsp. lyrata] gi|297311433|gb|EFH41857.1| hypothetical protein ARALYDRAFT_331219 [Arabidopsis lyrata subsp. lyrata]

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 83/135 (61%), Positives = 100/135 (74%), Gaps = 4/135 (2%)

Query: 7   ILLIFCLAIGIIFMSVLQPQH-FYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRAL 65
           +L+I  L I I  M  LQPQ    G EYDVRVIN F +NSSL LVIWC+S +GD+GGRAL
Sbjct: 1   MLIITSLTIMITLM--LQPQTMLLGEEYDVRVINNFRDNSSLPLVIWCTSPQGDLGGRAL 58

Query: 66  QAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGF 125
           Q GDD+ W ++  +W + ++ CTMKW+ KR+RF AFKV RDS RC   +KCSW V+EDGF
Sbjct: 59  QEGDDFEWTVKIDLW-SAEYTCTMKWNTKRKRFEAFKVSRDSNRCGSTKKCSWSVREDGF 117

Query: 126 YFSNDEVNWKKDFSW 140
           YFSNDEV W KDFSW
Sbjct: 118 YFSNDEVYWTKDFSW 132

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831226|ref|XP_002883495.1| hypothetical protein ARALYDRAFT_898978 [Arabidopsis lyrata subsp. lyrata] gi|297329335|gb|EFH59754.1| hypothetical protein ARALYDRAFT_898978 [Arabidopsis lyrata subsp. lyrata]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 95/126 (75%), Gaps = 2/126 (1%)

Query: 17  IIFMSVLQPQH-FYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRL 75
           IIF  +LQPQ  F G E+DVRVIN F +NSSL LVIWC+S +GD+GGRALQ GDD+ W  
Sbjct: 21  IIFTLILQPQTMFLGEEFDVRVINSFRDNSSLPLVIWCTSPQGDLGGRALQEGDDFEWTA 80

Query: 76  RTKIWG-TTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEVNW 134
           +  +W    ++ CTMKW+ KR+RF AFKV RDS RC   +KCSW V+EDGFYFS+DEV W
Sbjct: 81  KIDLWSWMAEYTCTMKWNSKRKRFEAFKVSRDSNRCGSTKKCSWSVREDGFYFSSDEVYW 140

Query: 135 KKDFSW 140
            KDFSW
Sbjct: 141 TKDFSW 146

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2076091	147	AT3G24060 "AT3G24060" [Arabido	0.971	0.931	0.611	1.5e-42
TAIR|locus:2179974	146	AT5G04350 "AT5G04350" [Arabido	0.858	0.828	0.336	7.4e-11
TAIR|locus:2153679	151	AT5G06020 "AT5G06020" [Arabido	0.893	0.834	0.282	1.4e-09
TAIR|locus:2088444	133	AT3G26880 "AT3G26880" [Arabido	0.879	0.932	0.260	2.9e-09
TAIR|locus:1006230770	151	AT1G26798 "AT1G26798" [Arabido	0.765	0.715	0.293	3.6e-09
TAIR|locus:4515103447	134	AT4G24973 [Arabidopsis thalian	0.780	0.820	0.256	5.9e-09
TAIR|locus:504955438	161	AT4G16195 "AT4G16195" [Arabido	0.652	0.571	0.309	1.2e-08
TAIR|locus:2089129	134	AT3G27680 "AT3G27680" [Arabido	0.879	0.925	0.255	2.6e-08
TAIR|locus:2176982	150	AT5G12060 "AT5G12060" [Arabido	0.964	0.906	0.263	4.2e-08
TAIR|locus:505006099	128	AT1G04645 "AT1G04645" [Arabido	0.517	0.570	0.289	5.3e-08

TAIR|locus:2076091 AT3G24060 "AT3G24060" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 88/144 (61%), Positives = 106/144 (73%)

Query:     2 KTLNSILLIFCL-AIG--IIFMSVLQPQH-FYGVEYDVRVINGFTNNSSLALVIWCSSEE 57
             KT+  ILL+F L AI   IIF  +LQPQ  F G E+DVRVIN F +NSSL LVIWC+S +
Sbjct:     5 KTI--ILLLFMLIAISLTIIFTLMLQPQTMFLGEEFDVRVINSFRDNSSLPLVIWCTSPQ 62

Query:    58 GDMGGRALQAGDDYGWRLRTKIWG-TTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKC 116
             GD+GGRALQ GDD+ W  +  +W    ++ CTMKWD KR++F AFKV RDS RC   +KC
Sbjct:    63 GDLGGRALQEGDDFEWTAKIDLWSWMAEYTCTMKWDSKRKQFEAFKVSRDSNRCGSTKKC 122

Query:   117 SWLVKEDGFYFSNDEVNWKKDFSW 140
             SW V+EDGFYFS+DEV W KDFSW
Sbjct:   123 SWSVREDGFYFSSDEVYWTKDFSW 146

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2179974 AT5G04350 "AT5G04350" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 42/125 (33%), Positives = 57/125 (45%)

Query:     8 LLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQA 67
             L IF + IG+  + V    H  G E  V V++    +S L L + C S++ D+G   L+ 
Sbjct:     4 LFIFSIVIGLC-IGVSNAFHEIG-ESKV-VLSNQLEHSKL-LKVHCRSKDDDLGEHILKI 59

Query:    68 GDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYF 127
             G DY +     IW TT F C M      +    F     S    L   C W+ +EDG YF
Sbjct:    60 GQDYEFTFGDNIWQTTSFSCQMDQGPNFKHHLDFVAYETSWSKALEASCKWIGREDGIYF 119

Query:   128 SNDEV 132
             S D V
Sbjct:   120 SQDGV 124

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153679 AT5G06020 "AT5G06020" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/138 (28%), Positives = 62/138 (44%)

Query:    10 IFCLAIGIIFMSVLQPQHFYGVEYDVR-VINGFT--NNSSLALVIWCSSEEGDMGGRALQ 66
             +F + I +IF++  +     G  + +R  +   T  NN+   L I C S++ D+G    +
Sbjct:    17 MFTICIVMIFVTCYETFQQDGEPFPIRGPLTRITVKNNNDYLLGIHCKSKDDDLGFHIHK 76

Query:    67 AGDDYGWRLRTKIWGTTDFMCTMKWDQKRRR-FHAFKVPRDSLRCNLFRKCSWLVKEDGF 125
              G+ YGW+       +T + C     Q  +  F   +  RD  RC   R C+W  K+D  
Sbjct:    77 EGELYGWKFHVNFQNSTLYFCGFSQGQDNKGVFDIDRAERDFYRC---RNCTWNAKKDSL 133

Query:   126 Y-FSN--DEVNWKKDFSW 140
             Y +SN    V W   F W
Sbjct:   134 YGYSNLPQTVTWF--FKW 149

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088444 AT3G26880 "AT3G26880" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 36/138 (26%), Positives = 63/138 (45%)

Query:     8 LLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQA 67
             L IF   +G+  +S +     YG +  + V N     +   L + C S+  D+G + L+ 
Sbjct:     4 LSIFLFVVGLCMISDV-----YGKKSTITVKNELNPKNKNILKVHCKSKNNDIGVKYLKI 58

Query:    68 GDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRK----CSWLVKED 123
             G+   +  +T  WGTT+F C +      +R+      +      LF K     +WL ++D
Sbjct:    59 GEVMSFSFKTNFWGTTEFWCNLYKGPDYKRYRGITAYQ---AIGLFAKDGSSYNWLARDD 115

Query:   124 GFYFSNDEV-NWKKDFSW 140
             G YF  D + ++ K + W
Sbjct:   116 GIYFHKDSLPSYYKTY-W 132

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1006230770 AT1G26798 "AT1G26798" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 34/116 (29%), Positives = 55/116 (47%)

Query:    17 IIFMSVLQPQHFYGVEYDV-----RVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDY 71
             +IF + L  +++  V+ D+      VI   T N    LV+ C ++  D+G  AL+  +  
Sbjct:    18 VIFKTSLAFENYTSVDVDLPFAPKHVIIINTLNPHERLVVHCRNKGKDLGVHALEPQEQI 77

Query:    72 GWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDS---LRCNLFRKCSWLVKEDG 124
              +R R  +  TT + CT  W    + F  F+V RD      C + R+C W + E G
Sbjct:    78 DFRFRVNLRRTTTYTCTFSWPGNAKTFDIFRVDRDDNSKSTCGICRECIWYICETG 133

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103447 AT4G24973 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/117 (25%), Positives = 53/117 (45%)

Query:     8 LLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQA 67
             L++  + I  +F+ + +      V+    +IN    N  L L   C S+  D+G ++L  
Sbjct:     8 LILSVILIAFLFVGLCEAHRHINVD----IINDIGPNVQLGL--HCKSKGKDLGPQSLAP 61

Query:    68 GDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDG 124
                +G+     +W TT F C   W+ + R F   K  RD++ C  +  C W ++  G
Sbjct:    62 HQHWGFTASLNVWETTLFFCHFVWENQSRWFDILKEKRDTIVCK-YHPCVWSIRPSG 117

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:504955438 AT4G16195 "AT4G16195" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 30/97 (30%), Positives = 47/97 (48%)

Query:    38 INGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRR 97
             IN    N  L L+  C S++ D+G R LQ G+ + +    + +G T + C+  W  +   
Sbjct:    52 INNDLGNQ-LTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNESHS 110

Query:    98 FHAFKVPRDS---LRCNLFRKCSWLVKEDGFYFSNDE 131
             F  +K  RDS    +C   R C W ++ +G    NDE
Sbjct:   111 FDIYKDHRDSGGDNKCESDR-CVWKIRRNGPCRFNDE 146

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089129 AT3G27680 "AT3G27680" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 34/133 (25%), Positives = 57/133 (42%)

Query:    13 LAIGIIFMSVLQPQHFYGVEYDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYG 72
             L++ +   S+    H  G    +R++N   ++ +L +   C S+   +G + +  G DY 
Sbjct:     4 LSVFLFVFSIYIFGHVSGT--GIRIVNELKSHKNLWMR--CYSKNDVIGPKIIPVGYDYV 59

Query:    73 WRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFRKCSWLVKEDGFYFSND-- 130
                R  IWGTT FMCT+K     R +  F   +     +      W  +EDG Y   +  
Sbjct:    60 NSFRANIWGTTRFMCTLKQRPNYRHYQNFTAFKQYTAYDNGADWDWRAREDGIYLKKEGG 119

Query:   131 ---EVNWKKDFSW 140
                 V+  K + W
Sbjct:   120 LKKSVDMNKVYDW 132

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176982 AT5G12060 "AT5G12060" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 38/144 (26%), Positives = 63/144 (43%)

Query:     1 MKTLNSILLIFCLAIGIIFMSVLQPQHFYGVEYDVRVINGFTNN--SSLALVIWCSSEEG 58
             +KT   +++I+ L I I F  V      + V +    +   TN     L L + C S + 
Sbjct:     5 LKTQVHVVVIYLL-IKIAFSQVKTD---FDVNWSTSKMVRITNRLGDGLTLNLHCKSADD 60

Query:    59 DMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSLRCNLFR-KCS 117
             D+G + L     + ++ RT I GTT F C   W  + +RF  +   RD +R ++    C 
Sbjct:    61 DLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSKRFDIYDDDRDGVRSHISCINCI 120

Query:   118 WLVKEDG-FYFSNDEVNWKKDFSW 140
             W +   G   FS  +  +   + W
Sbjct:   121 WDISIQGPCMFSESDHAFNICYDW 144

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006099 AT1G04645 "AT1G04645" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 22/76 (28%), Positives = 39/76 (51%)

Query:    49 LVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQKRRRFHAFKVPRDSL 108
             L I C S++ D+G   +    +Y ++ +  +W +T F C+ +WD + + F  +   RD  
Sbjct:    42 LTIHCKSKQDDLGIHVVPFKQEYHFKFQPNLWKSTLFFCSFQWDSQFKSFDIYDAQRDQG 101

Query:   109 RCNLFRKCSWLVKEDG 124
              C+    C W +K DG
Sbjct:   102 ICD---DCQWEIKPDG 114

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam05938	108	pfam05938, Self-incomp_S1, Plant self-incompatibil	2e-21

>gnl|CDD|218817 pfam05938, Self-incomp_S1, Plant self-incompatibility protein S1

 Score = 82.0 bits (203), Expect = 2e-21
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 35  VRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQK 94
           V + N   N  SL   I C S++ D+G   L+ G  +G+  R   WGTT F CT +W   
Sbjct: 3   VVIKNELGNGKSLN--IHCKSKDDDLGVHRLKPGQSFGFSFRDNFWGTTLFYCTFRWPNG 60

Query: 95  RRRFH--AFKVPRDSLRCNLFRKCSWLVKEDGFYFSNDEV-NWKKDFSW 140
           +      A++  RD  RC     C W  +EDG YF   +    +  + W
Sbjct: 61  KYHQSFDAYRAKRDDNRCG--ETCIWSAREDGIYFRRRKYGPDQLCYDW 107

This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF05938	110	Self-incomp_S1: Plant self-incompatibility protein	100.0
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	92.94
PF07732	117	Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01	89.07

>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein

Probab=100.00  E-value=4.7e-37  Score=214.58  Aligned_cols=106  Identities=35%  Similarity=0.834  Sum_probs=96.6

Q ss_pred             EEEEEEecCCCCCcceEEEEeeeCCCCCCcEEeCCCCeEEEEEeeCCCCcceEEEEEEeCCe--eEEEEEEeeCCCCcCC
Q 046294           33 YDVRVINGFTNNSSLALVIWCSSEEGDMGGRALQAGDDYGWRLRTKIWGTTDFMCTMKWDQK--RRRFHAFKVPRDSLRC  110 (141)
Q Consensus        33 ~~V~I~N~L~~~~~~~L~vhC~S~d~DlG~~~l~~g~~~~f~F~~~~~~~T~f~C~f~w~~~--~~~f~~y~~~~d~~~C  110 (141)
                      ++|+|+|+|+++.  .|.|||+|+|+|||.|.|+||++|+|+|+++++++|+|+|+|+|.+.  +++|+||+++++..+|
T Consensus         1 ~~V~I~N~L~~~~--~L~vhC~S~d~Dlg~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~~~~~~~~~f~vy~~~~~~~~c   78 (110)
T PF05938_consen    1 NHVVIINNLGPGK--ILTVHCKSKDDDLGWHVLKPGQSYSFSFRDNFFGTTLFWCHFRWPGGKYHHSFDVYRSSRDSRRC   78 (110)
T ss_pred             CEEEEEECCCCCC--eEEEEeeCCCccCCCEECCCCCEEEEEEecCcCCceeEEEEEEECCccEEEEEEEEeccccccCC
Confidence            4899999998886  89999999999999999999999999999999999999999999654  7899999999997776


Q ss_pred             CCCceeEEEEecCeEEecCCCC-CceEEeec
Q 046294          111 NLFRKCSWLVKEDGFYFSNDEV-NWKKDFSW  140 (141)
Q Consensus       111 ~~~~~c~W~~~~dGiY~~~~~~-~~~k~y~W  140 (141)
                      ..++.|.|+||+||||+.++.. +|+++|+|
T Consensus        79 ~c~~~c~W~ir~dGiy~~~~~~~~~~~~y~W  109 (110)
T PF05938_consen   79 RCGQTCNWSIREDGIYFSNNKNKPWKKCYPW  109 (110)
T ss_pred             CCCcEEEEEEECCEeEEEcCCCccCcEEeCC
Confidence            4346799999999999999876 56999999

Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=92.94  E-value=0.38  Score=39.16  Aligned_cols=62  Identities=15%  Similarity=0.151  Sum_probs=44.2

Q ss_pred             cccceEEEEEEecCCCCCcceEEEEeeeCCCC-CCcEEeCCCCeEEEEEeeCCCCcceEEEEE
Q 046294           28 FYGVEYDVRVINGFTNNSSLALVIWCSSEEGD-MGGRALQAGDDYGWRLRTKIWGTTDFMCTM   89 (141)
Q Consensus        28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~d~D-lG~~~l~~g~~~~f~F~~~~~~~T~f~C~f   89 (141)
                      -.|..+.|+++|.+++.....+.+|-....++ -+...++||+++.++|...-.|+-.|.|+.
T Consensus        64 ~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~  126 (311)
T TIGR02376        64 HEGDYVELTLINPPTNTMPHNVDFHAATGALGGAALTQVNPGETATLRFKATRPGAFVYHCAP  126 (311)
T ss_pred             ECCCEEEEEEEeCCCCCCceeeeecCCCccCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCC
Confidence            34567889999998532123677886543333 344558999999999998877877888994

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=89.07  E-value=1  Score=31.36  Aligned_cols=60  Identities=10%  Similarity=0.145  Sum_probs=41.9

Q ss_pred             cccceEEEEEEecCCCCCcceEEEEeeeCCCC--------CCcEEeCCCCeEEEEEeeCC-CCcceEEEEE
Q 046294           28 FYGVEYDVRVINGFTNNSSLALVIWCSSEEGD--------MGGRALQAGDDYGWRLRTKI-WGTTDFMCTM   89 (141)
Q Consensus        28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~d~D--------lG~~~l~~g~~~~f~F~~~~-~~~T~f~C~f   89 (141)
                      -.+.++.|++.|.|...  ..|..|=-....+        .....+.||+++.++|..+- .|+=-|.|+.
T Consensus        31 ~~Gd~v~i~~~N~l~~~--~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~   99 (117)
T PF07732_consen   31 REGDTVRITVTNNLDEP--TSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHV   99 (117)
T ss_dssp             ETTEEEEEEEEEESSSG--BSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECS
T ss_pred             EcCCeeEEEEEeccccc--cccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCC
Confidence            45678899999999765  3788886553322        22345899999999999886 5544555654

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	82.11

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}

Probab=82.11  E-value=1.1  Score=34.57  Aligned_cols=61  Identities=13%  Similarity=0.330  Sum_probs=43.6

Q ss_pred             cccceEEEEEEecCCCCCcceEEEEeeeC---CC--CCCcEEeCCCCeEEEEEeeCCCCcceEEEEEE
Q 046294           28 FYGVEYDVRVINGFTNNSSLALVIWCSSE---EG--DMGGRALQAGDDYGWRLRTKIWGTTDFMCTMK   90 (141)
Q Consensus        28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~---d~--DlG~~~l~~g~~~~f~F~~~~~~~T~f~C~f~   90 (141)
                      -.|.++.|+++|.|....  .+..|--..   |.  .+....+.||+++.+.|..+-.|+-.|.|+..
T Consensus        71 ~~Gd~v~v~~~N~~~~~~--~iH~HG~~~~~~DG~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~  136 (288)
T 3gdc_A           71 REGDALRIHFTNAGAHPH--TIHFHGVHRATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQS  136 (288)
T ss_dssp             ETTCEEEEEEEECSSSCB--CCEESSCCCGGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECCCS
T ss_pred             eCCCEEEEEEEeCCCCcc--cEEeccccccccCCCCCccceeECCCCEEEEEEEcCCCccEEEEecCc
Confidence            345778999999998653  677776431   11  11225689999999999987677777889874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	91.3
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	90.24
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	87.15
d1aoza1	129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	86.17
d1kv7a1	140	multi-copper oxidase CueO {Escherichia coli [TaxId	80.3

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=91.30  E-value=0.053  Score=37.17  Aligned_cols=62  Identities=16%  Similarity=0.208  Sum_probs=42.0

Q ss_pred             cccceEEEEEEecCCCCCcceEEEEeeeCC-CCCCcEEeCCCCeEEEEEeeCCCCcceEEEEE
Q 046294           28 FYGVEYDVRVINGFTNNSSLALVIWCSSEE-GDMGGRALQAGDDYGWRLRTKIWGTTDFMCTM   89 (141)
Q Consensus        28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~d-~DlG~~~l~~g~~~~f~F~~~~~~~T~f~C~f   89 (141)
                      -.|.++.|+++|.|.......+.+|-.... ++.....+.||+++.+.|..+--|+-.|.|+.
T Consensus        70 ~~Gd~v~v~~~N~~~~~h~h~ih~hg~~~~~~g~~~~~I~PG~t~ty~f~a~~~Gt~~yH~H~  132 (159)
T d1oe2a1          70 HEGDYVQLTLVNPATNAMPHNVEFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAP  132 (159)
T ss_dssp             ETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             ECCcEEEEEEECCCccccccceeeccccCCCCCcccccCCCCCeEEEEEEcCCCceEEEEeCC
Confidence            345788999999986432124555543321 12334568999999999988767877888974

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=90.24  E-value=0.072  Score=35.97  Aligned_cols=62  Identities=11%  Similarity=0.155  Sum_probs=42.4

Q ss_pred             cccceEEEEEEecCCCCCcceEEEEeeeCCC-CCCcEEeCCCCeEEEEEeeCCCCcceEEEEE
Q 046294           28 FYGVEYDVRVINGFTNNSSLALVIWCSSEEG-DMGGRALQAGDDYGWRLRTKIWGTTDFMCTM   89 (141)
Q Consensus        28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~d~-DlG~~~l~~g~~~~f~F~~~~~~~T~f~C~f   89 (141)
                      -.|.+++|+++|++.......+.+|=.+..+ +.....+.||+++.++|..+-.|+-.|.|+.
T Consensus        63 ~~Gd~v~v~~~N~~~~~~~H~~~~h~~~~~~~~~~~~~i~PG~t~~y~f~a~~~Gt~~YH~H~  125 (151)
T d1kbva1          63 REGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAV  125 (151)
T ss_dssp             ETTCEEEEEEEECTTCSSCBCCEETTCCSGGGGTTTTCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             ECCCEEEEEEEcCCCCceeeeccccccccCCCCcceeeeCCCCEEEEEEeCCCCeEEEEECCC
Confidence            3457889999998665332346666444333 2223347899999999998777877888984

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.15  E-value=0.18  Score=34.04  Aligned_cols=62  Identities=15%  Similarity=0.164  Sum_probs=41.8

Q ss_pred             cccceEEEEEEecCCCCCcceEEEEeeeCCC-CCCcEEeCCCCeEEEEEeeCCCCcceEEEEE
Q 046294           28 FYGVEYDVRVINGFTNNSSLALVIWCSSEEG-DMGGRALQAGDDYGWRLRTKIWGTTDFMCTM   89 (141)
Q Consensus        28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~d~-DlG~~~l~~g~~~~f~F~~~~~~~T~f~C~f   89 (141)
                      -.|..+.|++.|.+.....+.+.+|=....+ +-+...+.||+++.+.|..+-.|+-.|.|+.
T Consensus        67 ~~Gd~v~i~~~N~~~~~~~H~~~~h~~~~~~~~~~~~~i~PG~t~ty~f~a~~~Gt~~YH~H~  129 (153)
T d1mzya1          67 HEGDYVELTLINPPENTMPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAP  129 (153)
T ss_dssp             ETTCEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             eCCCEEEEEEEcCCCCceEccCccccCCcCCCCCccccccCCCEEEEEEEcCCCceEEEEeCC
Confidence            3457788999997654322345555433222 2233458999999999998777877888884

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=86.17  E-value=1.1  Score=28.95  Aligned_cols=63  Identities=13%  Similarity=0.133  Sum_probs=39.5

Q ss_pred             cccceEEEEEEecCCCCCcceEEEEeee------CCCCCC--cEEeCCCCeEEEEEeeCCCCcceEEEEEEe
Q 046294           28 FYGVEYDVRVINGFTNNSSLALVIWCSS------EEGDMG--GRALQAGDDYGWRLRTKIWGTTDFMCTMKW   91 (141)
Q Consensus        28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S------~d~DlG--~~~l~~g~~~~f~F~~~~~~~T~f~C~f~w   91 (141)
                      -.|..+.|++.|.|.... ..+..|=-.      .|...+  ...+.||+++.+.|..+-.|+=.|.|+...
T Consensus        39 ~~GD~v~i~l~N~l~~~~-~~iH~Hg~~~~~~~~~~~~~~~~~~~I~PG~s~~y~f~a~~~Gt~~YH~H~~~  109 (129)
T d1aoza1          39 NAGDSVVVELTNKLHTEG-VVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGM  109 (129)
T ss_dssp             ETTCEEEEEEEECCSSCC-BCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEECSTT
T ss_pred             ECCcEEEEEEEeCCCCCC-eeeeeccceeeccCccccccccccceECCCCEEEEEEECCCCCceEEecCCHH
Confidence            345678899999987542 234444211      122222  223789999999999876676567787643

>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: multi-copper oxidase CueO
species: Escherichia coli [TaxId: 562]

Probab=80.30  E-value=2  Score=28.19  Aligned_cols=59  Identities=15%  Similarity=0.030  Sum_probs=39.1

Q ss_pred             cccceEEEEEEecCCCCCcceEEEEeeeCC---CCCCcEEeCCCCeEEEEEeeCCC-CcceEEEE
Q 046294           28 FYGVEYDVRVINGFTNNSSLALVIWCSSEE---GDMGGRALQAGDDYGWRLRTKIW-GTTDFMCT   88 (141)
Q Consensus        28 ~~~~~~~V~I~N~L~~~~~~~L~vhC~S~d---~DlG~~~l~~g~~~~f~F~~~~~-~~T~f~C~   88 (141)
                      -+|..+.|++.|.|....  .+..|=-...   |..-...+.||+++.+.|..+-- |+-.|.|+
T Consensus        51 ~~Gd~v~v~~~N~l~~~~--siH~HG~~~~~~~dG~~~~~i~pg~~~~y~~~~~~~aGt~wyH~H  113 (140)
T d1kv7a1          51 QRGKAVTVDIYNQLTEET--TLHWHGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPH  113 (140)
T ss_dssp             ETTCEEEEEEEECSSSCB--CCEEETCCCCGGGSCCTTCCBCTTCEEEEEEECCSCSEEEEEECC
T ss_pred             ECCCEEEEEEEeCccccc--cEeeeeeecCCccCCCccceEccCCceeEEEEEecCCeeEEEEEC
Confidence            355788999999998653  6777764322   22224457899999999986543 43344565