Citrus Sinensis ID: 046299
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 138 | ||||||
| 302143751 | 550 | unnamed protein product [Vitis vinifera] | 0.615 | 0.154 | 0.413 | 4e-08 | |
| 359490164 | 1198 | PREDICTED: LRR receptor-like serine/thre | 0.608 | 0.070 | 0.413 | 5e-08 | |
| 147812512 | 986 | hypothetical protein VITISV_015942 [Viti | 0.623 | 0.087 | 0.391 | 2e-07 | |
| 359489995 | 867 | PREDICTED: probable LRR receptor-like se | 0.615 | 0.098 | 0.397 | 2e-07 | |
| 357519389 | 938 | Receptor-like kinase [Medicago truncatul | 0.615 | 0.090 | 0.373 | 3e-07 | |
| 224105895 | 963 | predicted protein [Populus trichocarpa] | 0.630 | 0.090 | 0.370 | 3e-07 | |
| 359490572 | 975 | PREDICTED: probable LRR receptor-like se | 0.615 | 0.087 | 0.402 | 3e-07 | |
| 147855809 | 1107 | hypothetical protein VITISV_029207 [Viti | 0.673 | 0.084 | 0.363 | 4e-07 | |
| 302143729 | 641 | unnamed protein product [Vitis vinifera] | 0.615 | 0.132 | 0.402 | 4e-07 | |
| 224115848 | 884 | predicted protein [Populus trichocarpa] | 0.594 | 0.092 | 0.375 | 4e-07 |
| >gi|302143751|emb|CBI22612.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSF----WTSLIILRKLAGDIITNLSRLAHMDLSFD 56
+ L +G N+LNG L ++ W SL ++ + NLS+L H DL+F+
Sbjct: 77 LTRLELGYNQLNGNLPESIAQLSQLQVLNMPWNSL--QGTVSEAHLFNLSKLQHFDLAFN 134
Query: 57 -LRTFNFSSGWIPPFQLNTIILGSCKMGPGFP 87
L T NFSS W+P FQL I+L SCK+GP FP
Sbjct: 135 SLLTLNFSSDWVPQFQLTEILLASCKLGPRFP 166
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490164|ref|XP_002268910.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAGDIIT-----NLSRLAHMDLSF 55
++ L + N+LNGTL ++ + SL I D I NLSRL+++DLS
Sbjct: 608 LRKLHLDFNQLNGTLPESVGQLANLQ---SLDIASNSLQDTINEAHLFNLSRLSYLDLSS 664
Query: 56 DLRTFNFSSGWIPPFQLNTIILGSCKMGPGFP 87
+ TFN S W+PPFQL ++ L SCK+GP FP
Sbjct: 665 NSLTFNMSFEWVPPFQLYSLRLASCKLGPHFP 696
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147812512|emb|CAN72773.1| hypothetical protein VITISV_015942 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAGDI----ITNLSRLAHMDLSFD 56
+++L + N+LNGTL ++ + I L L G I + NLS L++++LS +
Sbjct: 270 LRELHLDFNKLNGTLPESVGQLANLQSLD--IALNSLQGTISEAHLFNLSWLSYLNLSSN 327
Query: 57 LRTFNFSSGWIPPFQLNTIILGSCKMGPGFPN 88
TFN S W+PPFQL ++ L SCK+GP FP+
Sbjct: 328 SLTFNMSLDWVPPFQLLSLRLASCKLGPRFPS 359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489995|ref|XP_003634011.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 8/93 (8%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAGDIIT-----NLSRLAHMDLSF 55
+K+L + +N++NGTL K S + +LII +I+ +LSRL+++DLS
Sbjct: 315 LKELELDHNQINGTLPK---SIGQLTKLEALIIGSNSLQGVISEAHLLHLSRLSYLDLSS 371
Query: 56 DLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPN 88
+ FN SS W+PPFQL + L SC++GP FP+
Sbjct: 372 NSFNFNMSSEWVPPFQLIFLQLTSCQLGPRFPS 404
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357519389|ref|XP_003629983.1| Receptor-like kinase [Medicago truncatula] gi|355524005|gb|AET04459.1| Receptor-like kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAGDI----ITNLSRLAHMDLSFD 56
+K+L + N+LNG+L ++ S + + + G I + N S L +DLSF+
Sbjct: 332 LKELHLSINQLNGSLERSIHQLSSLVVLN--LAVNNMEGIISDVHLANFSNLKVLDLSFN 389
Query: 57 LRTFNFSSGWIPPFQLNTIILGSCKMGPGFP 87
T N S WIPPFQL I L C +GP FP
Sbjct: 390 DVTLNMSKNWIPPFQLENIGLAKCHLGPQFP 420
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSFW-TSLIILRKL-AGDIITNLSRLAHMDLSFDLR 58
+++L + NN+LNG++ ++ ++ S L+ L +G +NLS+L H+DLS++
Sbjct: 364 LRELDISNNQLNGSIPESIGFLSKLDYFDVSFNSLQGLVSGGHFSNLSKLKHLDLSYNSL 423
Query: 59 TFNFSSGWIPPFQLNTIILGSCKMGPGFP 87
F S W P FQL I L SC +GP FP
Sbjct: 424 VLRFKSDWDPAFQLKNIHLSSCHLGPCFP 452
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAGDI----ITNLSRLAHMDLSFD 56
+ L +G+N+LNGTL ++ I L G + + +LS+L +DLSF+
Sbjct: 411 LTRLHLGHNQLNGTLPESIAQLAQLELLK--IPSNSLQGTVSEAHLFSLSKLQRLDLSFN 468
Query: 57 -LRTFNFSSGWIPPFQLNTIILGSCKMGPGFP 87
L T N SS W+P FQL I L SCK+GP FP
Sbjct: 469 SLLTLNLSSDWVPQFQLTHIFLASCKLGPRFP 500
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147855809|emb|CAN79130.1| hypothetical protein VITISV_029207 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAGDIIT----NLSRLAHMDLSFD 56
++ L++ N+LNGTL ++ +++ I L G I NLS L +DLS++
Sbjct: 529 LERLYLDYNQLNGTLPESIGQLAKLTWFD--IGSNSLQGVISEAHFFNLSNLYRLDLSYN 586
Query: 57 LRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH 95
TFN S W+PP QL ++ L SCK+GP FP+ + H
Sbjct: 587 SLTFNMSLEWVPPSQLGSLQLASCKLGPRFPSWLQTQKH 625
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143729|emb|CBI22590.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAGDI----ITNLSRLAHMDLSFD 56
+ L +G+N+LNGTL ++ I L G + + +LS+L +DLSF+
Sbjct: 77 LTRLHLGHNQLNGTLPESIAQLAQLELLK--IPSNSLQGTVSEAHLFSLSKLQRLDLSFN 134
Query: 57 -LRTFNFSSGWIPPFQLNTIILGSCKMGPGFP 87
L T N SS W+P FQL I L SCK+GP FP
Sbjct: 135 SLLTLNLSSDWVPQFQLTHIFLASCKLGPRFP 166
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115848|ref|XP_002332072.1| predicted protein [Populus trichocarpa] gi|222831958|gb|EEE70435.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 4 LFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAGDI----ITNLSRLAHMDLSFDLRT 59
LF+ +N+LNG+ + ++ I + G I NL+ L H+D+S +
Sbjct: 302 LFLSDNKLNGSWIENIRLLSDLAYLD--ISYNFMNGTISEINFLNLTELTHLDISSNAFV 359
Query: 60 FNFSSGWIPPFQLNTIILGSCKMGPGFP 87
FN S W PPFQL+T+I+ SCK+GP FP
Sbjct: 360 FNLSLNWTPPFQLDTLIMSSCKLGPSFP 387
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 138 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.79 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.78 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.58 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.58 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.57 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.52 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.48 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.45 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.42 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.41 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.39 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.34 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.32 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.28 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.27 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.26 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.24 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.24 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.23 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.22 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.22 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.21 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 99.19 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.16 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.16 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 99.13 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.12 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.12 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.09 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.99 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.98 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.94 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.94 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.81 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.59 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.59 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.45 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.43 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.37 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.31 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.23 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 98.21 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.21 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.19 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.12 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.09 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.08 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.05 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.0 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.66 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.65 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.64 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.6 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.54 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.42 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.24 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 97.22 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 97.21 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.13 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.99 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 96.88 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 96.35 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.16 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 96.09 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.01 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.53 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.18 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.76 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 94.7 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 94.15 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 94.15 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.49 | |
| smart00365 | 26 | LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | 92.1 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 91.74 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.82 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 88.23 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 86.57 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-19 Score=148.08 Aligned_cols=133 Identities=23% Similarity=0.248 Sum_probs=84.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++.+|..++.+ ++|++|++++ .+.+ ..|+++++|++|++++|.+++.+|..+..+.+|++|+
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSF---SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCEEECcCCcccccCChHHhcC---CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 4556666666666666666666 7777777766 6655 4566667777777777766666666666666666777
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++.+|..++.+++ +|+++ +.+++|++|++++|+++ .++|+.|++++|.++|
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 7666666666666666665 55555 34455666666666654 2455666666666655
Q ss_pred cCC
Q 046299 134 QYP 136 (138)
Q Consensus 134 ~iP 136 (138)
.+|
T Consensus 299 ~~p 301 (968)
T PLN00113 299 EIP 301 (968)
T ss_pred CCC
Confidence 554
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-19 Score=145.55 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=77.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCC-----------------------CCCEEEc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLS-----------------------RLAHMDL 53 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~-----------------------~L~~L~l 53 (138)
|+.|++++|++++.+|..+..+ +.|+.|++++ .+++ ..+..++ +|+.|++
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l 482 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKL---PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482 (968)
T ss_pred CCEEECcCCEeeeECChhHhcC---CCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence 3556666666666666655555 5555555555 5554 2233344 4444555
Q ss_pred ccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--
Q 046299 54 SFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV-- 117 (138)
Q Consensus 54 s~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~-- 117 (138)
++|++++..|..+..+.+|++|++++|++++.+|..+..+++ +|+++ ..+++|+.|++++|+++
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc
Confidence 555554455544555555556666666665555555555555 55555 34556777777777766
Q ss_pred -------CCCCcEEEccCCeeeecCCC
Q 046299 118 -------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 118 -------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
..+|+.+++++|++.|.+|.
T Consensus 563 ~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 563 IPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CChhHhcCcccCEEeccCCcceeeCCC
Confidence 24577777777777777764
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.1e-16 Score=119.36 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=61.9
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+|+|++|+|+..-...|..+ .+|..|.|+. +++. ..|.++++|+.|++..|+|...--..|..+.+|+.|.|.
T Consensus 177 ~L~La~N~It~l~~~~F~~l---nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSL---NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred EEeecccccccccccccccc---chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 34444444443333334444 4444444444 4443 334444444444444444432212233333333444444
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQY 135 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~i 135 (138)
.|.+...-...|..+.+ +++++ -++++|+.|++|+|.|. -++|++|||++|+|+. +
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l 332 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-L 332 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc-C
Confidence 44443222223333433 44444 34566777777777776 3677788888887776 4
Q ss_pred C
Q 046299 136 P 136 (138)
Q Consensus 136 P 136 (138)
|
T Consensus 333 ~ 333 (873)
T KOG4194|consen 333 D 333 (873)
T ss_pred C
Confidence 4
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.3e-16 Score=120.23 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=73.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|..|.|+.|+++...+..|..+ ++|+.|+|.. +++. -.|.++++|+.|.+..|.+...-...|..+.++++|+
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L---~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRL---PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred heeeecccCcccccCHHHhhhc---chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 4578899999988777788889 9999999988 6665 5666666666666666666554455555555566666
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~ 117 (138)
++.|+++..--.|+.+++. .|++| ...++|++|+|++|+|+
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 6666655444445555555 55555 33344555555555544
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-16 Score=108.53 Aligned_cols=131 Identities=11% Similarity=0.146 Sum_probs=92.4
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+.|.||+|+++. +|+.+..+ .+|+.|++++ +++. ..++.+++|+.|+++-|++. ..|..|+..+.|+.|++.
T Consensus 36 TrLtLSHNKl~~-vppnia~l---~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 36 TRLTLSHNKLTV-VPPNIAEL---KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhcccCceee-cCCcHHHh---hhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 456677888754 66667777 7777777777 7777 66777777777777777764 566777777777777777
Q ss_pred CCcCCC-CCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGP-GFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~-~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|++.. .+|..|..+.. .+.++ +.+++|+.|.+..|.+- .+.|++|.+.+|+++- +|
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v-lp 189 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV-LP 189 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee-cC
Confidence 777652 35555554444 23332 56677999999999876 4678899999999987 76
Q ss_pred CC
Q 046299 137 RE 138 (138)
Q Consensus 137 ~~ 138 (138)
+|
T Consensus 190 pe 191 (264)
T KOG0617|consen 190 PE 191 (264)
T ss_pred hh
Confidence 54
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-16 Score=121.67 Aligned_cols=131 Identities=16% Similarity=0.183 Sum_probs=85.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|+.||||+|++.. .|..+..- +++-+|+||+ ++.. ..|.+++.|-.||+|+|++. .+|+....+..|++|.
T Consensus 105 Lt~lDLShNqL~E-vP~~LE~A---Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 105 LTILDLSHNQLRE-VPTNLEYA---KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ceeeecchhhhhh-cchhhhhh---cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence 4567777777743 66666666 6777777777 6666 55667777777777777774 4455555555566666
Q ss_pred ecCCcCC-------------------------CCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc-
Q 046299 77 LGSCKMG-------------------------PGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV- 117 (138)
Q Consensus 77 l~~n~l~-------------------------~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~- 117 (138)
+++|.+. ..+|.++..+.+ .+|+| -.+.+|+.|+||+|+|+
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee
Confidence 6666442 124444444444 45555 34567888888888887
Q ss_pred -------CCCCcEEEccCCeeeecCCC
Q 046299 118 -------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 118 -------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+.++++|++|.|+++. +|+
T Consensus 260 L~~~~~~W~~lEtLNlSrNQLt~-LP~ 285 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRNQLTV-LPD 285 (1255)
T ss_pred eeccHHHHhhhhhhccccchhcc-chH
Confidence 5788888888888876 664
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-14 Score=112.15 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=70.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.|+|++|.++|.+|..++.+ ++|+.|+|++ .+++ ..++.+++|+.|++++|++++.+|..+..+.+|++|++
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L---~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKL---RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEECCCCCccccCCHHHhCC---CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 467888888888888888888 8888888888 8876 56788888888888888888888887877888888888
Q ss_pred cCCcCCCCCCCCCCC
Q 046299 78 GSCKMGPGFPNPIPE 92 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~ 92 (138)
++|+++|.+|..+..
T Consensus 498 s~N~l~g~iP~~l~~ 512 (623)
T PLN03150 498 NGNSLSGRVPAALGG 512 (623)
T ss_pred cCCcccccCChHHhh
Confidence 888888888877664
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-15 Score=102.12 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=82.1
Q ss_pred CCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 26 SFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
...+.|.+|+ +++. ..++.+.+|+.|++++|+++ .+|..+..+++|+.|+++-|++. ..|..|+.++. ++|+.
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 7788889999 8888 88899999999999999995 77888888899999999999997 88999998877 55554
Q ss_pred -------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCCC
Q 046299 101 -------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 101 -------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
-.++.|+.|+++.|.+. .++|+.|.+.+|.+-. +|.
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpk 167 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPK 167 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcH
Confidence 11234455555555555 3566666676666654 553
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-15 Score=112.89 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=98.0
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+.++..+|+++. .|+.++.+ .++..+++.+ +++. +..-+++.|+++|..+|-+ +.+|+.++.+.+|+.|++.
T Consensus 140 ~dl~~~~N~i~s-lp~~~~~~---~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 140 EDLDATNNQISS-LPEDMVNL---SKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhcccccccc-CchHHHHH---HHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhh
Confidence 345666677753 56667777 7777777777 7776 3333478888888888877 4788888888888888888
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP 136 (138)
.|++. .+| +|..+.. ++.++ +.+.++..||++.|+++ ..+|++||+|+|.+++ +|
T Consensus 215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp 291 (565)
T KOG0472|consen 215 RNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LP 291 (565)
T ss_pred hcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CC
Confidence 88886 677 6666665 44444 67889999999999999 4789999999999998 77
Q ss_pred C
Q 046299 137 R 137 (138)
Q Consensus 137 ~ 137 (138)
.
T Consensus 292 ~ 292 (565)
T KOG0472|consen 292 Y 292 (565)
T ss_pred c
Confidence 5
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-14 Score=117.73 Aligned_cols=114 Identities=19% Similarity=0.279 Sum_probs=87.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|+.|++.+|.++...-+.+.+. +.|+.|+|++ ++.. ..+.++..|++|++|+|+++ .+|.....+..|++|.
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~---~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNF---KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHhcCcccccchhhhccc---cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 3556777888876655556666 7888888888 7776 66777888888888888885 5666777777788888
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--------C-CCCcEEEccCCe
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--------S-QSWTIIDLGINK 130 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--------~-~~L~~L~Ls~N~ 130 (138)
..+|++. .+| .+..++ +|+.+|+|.|+++ | ++|++||+++|.
T Consensus 437 ahsN~l~-~fP-e~~~l~----------qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLL-SFP-ELAQLP----------QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCCcee-ech-hhhhcC----------cceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 8888886 777 555544 4999999999988 5 789999999986
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-14 Score=112.72 Aligned_cols=126 Identities=16% Similarity=0.115 Sum_probs=87.6
Q ss_pred EEccCcccc-CcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 4 LFVGNNRLN-GTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 4 L~Ls~N~l~-~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
+++.+|++. .-+|..+..+ ..|+.||||+ +++. ..+..-+++-+|++|+|+|.....+-|.++..|-+|++++
T Consensus 83 v~~R~N~LKnsGiP~diF~l---~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRL---KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HhhhccccccCCCCchhccc---ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 344455542 1256667777 7888888888 8777 5666677777888888888644445566667777888888
Q ss_pred CcCCCCCCCCCCCCCC--eEEec-------------------------------------cCCCceeEEEeeCCccc---
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS-------------------------------------SFQQYVFRVDIYFQQYV--- 117 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls-------------------------------------~~l~~L~~L~ls~N~l~--- 117 (138)
|++. .+|+.++++.. .|+++ ..+.+|..+|+|.|.+.
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 8886 67776666555 55555 34567777788888776
Q ss_pred -----CCCCcEEEccCCeeee
Q 046299 118 -----SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 -----~~~L~~L~Ls~N~l~g 133 (138)
..+|+.|+||+|+|+.
T Consensus 239 ecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred HHHhhhhhhheeccCcCceee
Confidence 3678888888888875
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-13 Score=91.29 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=37.9
Q ss_pred CcEEEccCccccCcCCcccc-CCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCC-ccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASD-SFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGW-IPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~-~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~-~~~~~L~~L~ 76 (138)
+++|+|.+|.|+. + +.++ .+ .+|+.|++++ .++. +.+..++.|++|++++|+++. +++.+ ..+++|++|+
T Consensus 21 ~~~L~L~~n~I~~-I-e~L~~~l---~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 21 LRELNLRGNQIST-I-ENLGATL---DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S--TT----TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-c-cchhhhh---cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 3567888888864 3 3454 46 7788888888 8887 777788888888888888863 33222 2356788888
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDL 126 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~L 126 (138)
+++|+|. .+- .+..+. .+++|+.|++.+|.++ .++|+.||-
T Consensus 95 L~~N~I~-~l~-~l~~L~-------~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKIS-DLN-ELEPLS-------SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS----SCC-CCGGGG-------G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCC-ChH-HhHHHH-------cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888886 222 222221 2556888888888877 466776653
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=102.13 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=87.1
Q ss_pred CccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccC
Q 046299 27 FWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSF 102 (138)
Q Consensus 27 ~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~ 102 (138)
.++.|+|++ .+++ ..++.+++|+.|++++|.++|.+|..+..+.+|+.|++++|+++|.+|+.++.+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~------- 491 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS------- 491 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC-------
Confidence 378899999 9988 77999999999999999999999999999999999999999999999999988766
Q ss_pred CCceeEEEeeCCccc---C-------CCCcEEEccCCeeeecCC
Q 046299 103 QQYVFRVDIYFQQYV---S-------QSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 103 l~~L~~L~ls~N~l~---~-------~~L~~L~Ls~N~l~g~iP 136 (138)
|++|++++|+++ | .++..+++++|.....+|
T Consensus 492 ---L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 492 ---LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ---CCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999998 3 345678899887554444
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=100.83 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=37.2
Q ss_pred CcceEEecCCcCCCCCCCCCCCCCCeEEec--------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeec
Q 046299 71 QLNTIILGSCKMGPGFPNPIPEMPHDVLIS--------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 71 ~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls--------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~ 134 (138)
+|+.|++++|+|+ .+|.....+. .|+++ ....+|+.|++++|+|+ .++++.++|++|+|+|.
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l~s~L~-~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVLPSELK-ELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ccceEEecCCccc-CCCCcccCCC-EEEccCCcCCCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 4566666666665 3444332211 45554 11235667777777777 35677788888888775
Q ss_pred CC
Q 046299 135 YP 136 (138)
Q Consensus 135 iP 136 (138)
+|
T Consensus 461 ~~ 462 (788)
T PRK15387 461 TL 462 (788)
T ss_pred HH
Confidence 44
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=100.81 Aligned_cols=123 Identities=15% Similarity=0.246 Sum_probs=61.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|++++|+|+. +|..+. .+|+.|++++ +++. ..+. ++|+.|++++|+++ .+|..+. .+|++|++
T Consensus 222 L~~L~Ls~N~Lts-LP~~l~-----~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 222 IKTLYANSNQLTS-IPATLP-----DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV 290 (754)
T ss_pred CCEEECCCCcccc-CChhhh-----ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence 5677777777764 454332 3455555555 5544 1121 24555555555554 2333332 24555555
Q ss_pred cCCcCCCCCCCCCCC-------------------CCC--eEEec---------cCCCceeEEEeeCCccc------CCCC
Q 046299 78 GSCKMGPGFPNPIPE-------------------MPH--DVLIS---------SFQQYVFRVDIYFQQYV------SQSW 121 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~-------------------l~~--~L~ls---------~~l~~L~~L~ls~N~l~------~~~L 121 (138)
++|+++ .+|..+.. .++ .|+++ .-.++|+.|++++|+|+ +++|
T Consensus 291 s~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L 369 (754)
T PRK15370 291 YDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTI 369 (754)
T ss_pred CCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhhcCCc
Confidence 555554 23322110 011 23333 11236667777777666 4566
Q ss_pred cEEEccCCeeeecCC
Q 046299 122 TIIDLGINKFSGQYP 136 (138)
Q Consensus 122 ~~L~Ls~N~l~g~iP 136 (138)
+.|++++|+|++ +|
T Consensus 370 ~~LdLs~N~Lt~-LP 383 (754)
T PRK15370 370 TTLDVSRNALTN-LP 383 (754)
T ss_pred CEEECCCCcCCC-CC
Confidence 777777777764 55
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-12 Score=96.31 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=26.6
Q ss_pred cEEEccCccccCcCCccccCCCCCCC---ccEEEccc-cccc-------ccccCC-CCCCEEEcccCccc
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSF---WTSLIILR-KLAG-------DIITNL-SRLAHMDLSFDLRT 59 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~---L~~L~Ls~-~l~~-------~~~~~l-~~L~~L~ls~N~l~ 59 (138)
++|++++|.+.+..+..+..+ .+ |++|++++ ++++ ..+..+ ++|+.|++++|.++
T Consensus 84 ~~L~l~~~~~~~~~~~~~~~l---~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 84 QELDLSDNALGPDGCGVLESL---LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred eEEEccCCCCChhHHHHHHHH---hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 455555555544444444444 33 55555555 5442 223334 45555555555554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-13 Score=109.78 Aligned_cols=130 Identities=14% Similarity=0.150 Sum_probs=97.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|+++++++|++++ +|++++.+ .+|+.++..+ +++. ..+...++|+.+.+.+|.++ -+|+...+...|++|++
T Consensus 243 l~~~dis~n~l~~-lp~wi~~~---~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 243 LQYLDISHNNLSN-LPEWIGAC---ANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ceeeecchhhhhc-chHHHHhc---ccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 5788999999976 67999999 9999999999 8877 66777888888888888885 56666677778999999
Q ss_pred cCCcCCCCCCCCCCCCCC----eEEec------------------------------------cCCCceeEEEeeCCccc
Q 046299 78 GSCKMGPGFPNPIPEMPH----DVLIS------------------------------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~----~L~ls------------------------------------~~l~~L~~L~ls~N~l~ 117 (138)
..|+|. .+|+.+..... .+..+ .++.+|+.|+|++|++.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 999986 77775433222 11111 45677888888888777
Q ss_pred ---------CCCCcEEEccCCeeeecCCC
Q 046299 118 ---------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 118 ---------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+..|+.|+||+|+++. +|.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~-Lp~ 424 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTT-LPD 424 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhh-hhH
Confidence 3567788888888875 653
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-11 Score=99.34 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=66.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|+.|++++|+|+. +|..+ . .+|++|++++ ++++ ..+ ..+|+.|++++|+++ .+|..+. .+|++|++
T Consensus 201 L~~L~Ls~N~Lts-LP~~l--~---~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 201 ITTLILDNNELKS-LPENL--Q---GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CcEEEecCCCCCc-CChhh--c---cCCCEEECCCCccccCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 5789999999985 66644 3 6899999999 9988 333 247999999999997 6676553 47999999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEec
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLIS 100 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls 100 (138)
++|+++ .+|..+..--..|+++
T Consensus 270 s~N~L~-~LP~~l~~sL~~L~Ls 291 (754)
T PRK15370 270 FHNKIS-CLPENLPEELRYLSVY 291 (754)
T ss_pred cCCccC-ccccccCCCCcEEECC
Confidence 999998 6787654210166665
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-13 Score=100.03 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=54.0
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEccc-CccceeCCCCCccccCcceEE
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSF-DLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~-N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++++|..|+|+.+.|.+|+.+ ++|+.||||+ +|+. ++|.++++|..|-+-+ |+|+......|..+.+++.|.
T Consensus 70 veirLdqN~I~~iP~~aF~~l---~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTL---HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred eEEEeccCCcccCChhhccch---hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 468899999998888899999 9999999999 8887 8899998887765555 888644333444444333333
Q ss_pred e
Q 046299 77 L 77 (138)
Q Consensus 77 l 77 (138)
+
T Consensus 147 l 147 (498)
T KOG4237|consen 147 L 147 (498)
T ss_pred c
Confidence 3
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.1e-13 Score=96.49 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=76.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|+++|||+|.|+. +.+++.-+ +.++.|++|+ .+.. ..+..+++|+.||+|+|.++. +...-..+-+.++|.++
T Consensus 286 LtelDLS~N~I~~-iDESvKL~---Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 286 LTELDLSGNLITQ-IDESVKLA---PKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhccccccchhh-hhhhhhhc---cceeEEeccccceeeehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 4566777777753 55666666 6777777777 6666 556667777777777776642 11111233456677777
Q ss_pred CCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g~iP 136 (138)
.|.+. .+ ..++ .+-+|..||+++|+|. .+.|+.+.|.+|++.+ +|
T Consensus 361 ~N~iE-~L-SGL~----------KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~v 415 (490)
T KOG1259|consen 361 QNKIE-TL-SGLR----------KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SV 415 (490)
T ss_pred hhhHh-hh-hhhH----------hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cc
Confidence 77664 11 1122 2445899999999998 5778889999999987 55
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.4e-11 Score=96.56 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=65.8
Q ss_pred CcEEEccCccccCcCCccccCCC-------------C-CCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCC
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFP-------------S-FSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSS 64 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~-------------~-~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~ 64 (138)
|++|++++|+|+.. |..+..+. . ..+|+.|++++ +++. .. ..++|+.|++++|++++ +|.
T Consensus 244 Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~-Lp~ 319 (788)
T PRK15387 244 LRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS-LPA 319 (788)
T ss_pred CcEEEecCCccCcc-cCcccccceeeccCCchhhhhhchhhcCEEECcCCccccccc--cccccceeECCCCcccc-CCC
Confidence 56777777777763 33221110 0 02344555555 5544 21 23556666666666653 221
Q ss_pred CCc-----------------cccCcceEEecCCcCCCCCCCCCCCCCCeEEec--------cCCCceeEEEeeCCccc--
Q 046299 65 GWI-----------------PPFQLNTIILGSCKMGPGFPNPIPEMPHDVLIS--------SFQQYVFRVDIYFQQYV-- 117 (138)
Q Consensus 65 ~~~-----------------~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls--------~~l~~L~~L~ls~N~l~-- 117 (138)
... ...+|++|++++|+|+ .+|.....+. .|+++ ....+|+.|++++|+|+
T Consensus 320 lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~-~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~L 397 (788)
T PRK15387 320 LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELY-KLWAYNNRLTSLPALPSGLKELIVSGNRLTSL 397 (788)
T ss_pred CcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccc-eehhhccccccCcccccccceEEecCCcccCC
Confidence 100 0125777777777776 4554332222 22222 22235666777777666
Q ss_pred ---CCCCcEEEccCCeeeecCC
Q 046299 118 ---SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 118 ---~~~L~~L~Ls~N~l~g~iP 136 (138)
+.+|+.|++++|+|++ +|
T Consensus 398 P~l~s~L~~LdLS~N~Lss-IP 418 (788)
T PRK15387 398 PVLPSELKELMVSGNRLTS-LP 418 (788)
T ss_pred CCcccCCCEEEccCCcCCC-CC
Confidence 3456666666666665 55
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-13 Score=102.31 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=92.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCc-cccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWI-PPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~-~~~~L~~L~l 77 (138)
|++||...|.+ +.+|+.++.+ .+|+.||+.. ++.. +.|.++..|++++++.|++. .+|.+.. .+.++..||+
T Consensus 185 L~~ld~~~N~L-~tlP~~lg~l---~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 185 LKHLDCNSNLL-ETLPPELGGL---ESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHhcccchhhh-hcCChhhcch---hhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 46778888888 5688888888 8888888888 8888 88888888888998888885 4555444 5677888999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--C-----CCCcEEEccCCeee
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--S-----QSWTIIDLGINKFS 132 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--~-----~~L~~L~Ls~N~l~ 132 (138)
.+|+++ ++|..+..+.+ |.+||+|+|.|+ | -+|+.|-+.+|++.
T Consensus 260 RdNklk-e~Pde~clLrs----------L~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLRS----------LERLDLSNNDISSLPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred cccccc-cCchHHHHhhh----------hhhhcccCCccccCCcccccceeeehhhcCCchH
Confidence 999987 88888776655 999999999999 3 25667777788764
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-11 Score=67.85 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=41.5
Q ss_pred CCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCcc
Q 046299 46 SRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQY 116 (138)
Q Consensus 46 ~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l 116 (138)
++|++|++++|+++...+..|..+.+|++|++++|+++...|..|.++++ |++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~----------L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPN----------LRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTT----------ESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCC----------CCEEeCcCCcC
Confidence 45677777777776555566666777777777777777555556665544 77777777764
|
... |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.16 E-value=5e-12 Score=93.03 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=80.4
Q ss_pred CcEEEccCccccC------cCCccccCCCCCCCccEEEccc-cccc---ccccCC---CCCCEEEcccCccce----eCC
Q 046299 1 MKDLFVGNNRLNG------TLTKASDSFPSFSFWTSLIILR-KLAG---DIITNL---SRLAHMDLSFDLRTF----NFS 63 (138)
Q Consensus 1 L~~L~Ls~N~l~~------~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l---~~L~~L~ls~N~l~~----~~~ 63 (138)
+++++++++.+.+ .++..+..+ ++|+.|++++ .+.+ ..+..+ ++|++|++++|+++. .+.
T Consensus 53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 53 LKELCLSLNETGRIPRGLQSLLQGLTKG---CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred ceEEeccccccCCcchHHHHHHHHHHhc---CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 4567777777752 233456666 8889999988 7764 334333 448999999988762 111
Q ss_pred CCCccc-cCcceEEecCCcCCCC----CCCCCCCCCC--eEEec----------------cCCCceeEEEeeCCccc---
Q 046299 64 SGWIPP-FQLNTIILGSCKMGPG----FPNPIPEMPH--DVLIS----------------SFQQYVFRVDIYFQQYV--- 117 (138)
Q Consensus 64 ~~~~~~-~~L~~L~l~~n~l~~~----~p~~~~~l~~--~L~ls----------------~~l~~L~~L~ls~N~l~--- 117 (138)
..+... .+|++|++++|.+++. ++..+..+.. +++++ ...++|++|++++|.++
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 222333 5788888888888732 2223433333 56655 12346777777777765
Q ss_pred ----------CCCCcEEEccCCeeee
Q 046299 118 ----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 ----------~~~L~~L~Ls~N~l~g 133 (138)
.++|++|++++|.+++
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCch
Confidence 2457777777777653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-11 Score=84.02 Aligned_cols=111 Identities=13% Similarity=0.121 Sum_probs=36.7
Q ss_pred ccCccccCcCCccccCCCCCCCccEEEccc-cccc-cccc-CCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcC
Q 046299 6 VGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIIT-NLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKM 82 (138)
Q Consensus 6 Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~-~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l 82 (138)
+..+.|.. +| .+.+. .+++.|+|.+ .++. +.++ .+.+|+.|++++|.++. ++ .+..+.+|++|++++|++
T Consensus 4 lt~~~i~~-~~-~~~n~---~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 4 LTANMIEQ-IA-QYNNP---VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS--
T ss_pred cccccccc-cc-ccccc---cccccccccccccccccchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCC
Confidence 44455532 33 24455 7899999999 9998 7776 58999999999999973 33 466678999999999999
Q ss_pred CCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 83 GPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 83 ~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
+ .+++.+.. .+++|+.|++++|+|. .++|+.|++.+|+++.
T Consensus 77 ~-~i~~~l~~---------~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 77 S-SISEGLDK---------NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --S-CHHHHH---------H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred C-ccccchHH---------hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 8 55443321 2345999999999998 5889999999999874
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=66.49 Aligned_cols=56 Identities=25% Similarity=0.182 Sum_probs=30.1
Q ss_pred CccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcC
Q 046299 27 FWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKM 82 (138)
Q Consensus 27 ~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l 82 (138)
+|++|++++ +++. ..|.++++|++|++++|.++...+..|..+.+|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 344455554 4444 3455555555555555555555555555555555555555543
|
... |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=95.41 Aligned_cols=128 Identities=18% Similarity=0.190 Sum_probs=74.6
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+.|++.++.+. .+|..| .. .+|+.|++++ ++.. ..+..+++|++++++++.....+| .+..+.+|++|+++
T Consensus 592 r~L~~~~~~l~-~lP~~f-~~---~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 592 RLLRWDKYPLR-CMPSNF-RP---ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred EEEEecCCCCC-CCCCcC-Cc---cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 45566666553 345544 34 5666666666 6555 445556666666666554333444 24445566666666
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|.....+|..+..+++ .|+++ ..+++|+.|++++|... +.+|+.|++++|.++. +|
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~-lP 741 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE-FP 741 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccc-cc
Confidence 65544456666655555 55554 13556778888777533 4577788888887764 55
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-10 Score=94.87 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=36.0
Q ss_pred CcceEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCcc-c-----CCCCcEEEccCCee
Q 046299 71 QLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQY-V-----SQSWTIIDLGINKF 131 (138)
Q Consensus 71 ~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l-~-----~~~L~~L~Ls~N~l 131 (138)
+|++|++++|...+.+|.+++.+++ .|+++ ..+++|+.|++++|.. . +.+++.|+|++|.+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence 4555566665554556666666655 56555 1245566666665432 2 34566666666666
Q ss_pred eecCC
Q 046299 132 SGQYP 136 (138)
Q Consensus 132 ~g~iP 136 (138)
+. +|
T Consensus 859 ~~-iP 862 (1153)
T PLN03210 859 EE-VP 862 (1153)
T ss_pred cc-Ch
Confidence 54 44
|
syringae 6; Provisional |
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.6e-11 Score=90.84 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=74.6
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-cc-ccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DI-ITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~-~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+.|++++|.+.. +|..++.+ ++|+.|++++ +++. .. .+..++|+.|++++|+++ .+|........|+++.++
T Consensus 143 ~~L~l~~N~i~~-l~~~~~~l---~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 143 KELDLSDNKIES-LPSPLRNL---PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred ccccccccchhh-hhhhhhcc---ccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 455566666532 44455555 6666666666 6555 22 225556666666666663 344332233346666666
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|.+. ..+..+..+.. .+.++ +.++.+++|++++|+++ ..+++.+|+++|.+...+|
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccccccccCccCEEeccCccccccch
Confidence 66432 33333333333 22222 55677899999999988 3788899999998876444
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-10 Score=86.13 Aligned_cols=80 Identities=23% Similarity=0.210 Sum_probs=73.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|+.|+|++|+|+++-+.+|.++ ..++.|+|.. ++.. ..|.++..|+.|++.+|+|+...|.+|....+|.+|.
T Consensus 276 L~~lnlsnN~i~~i~~~aFe~~---a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFEGA---AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred ceEeccCCCccchhhhhhhcch---hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 6789999999999999999999 9999999999 8887 8899999999999999999999999999999999999
Q ss_pred ecCCcCC
Q 046299 77 LGSCKMG 83 (138)
Q Consensus 77 l~~n~l~ 83 (138)
+-.|.+.
T Consensus 353 l~~Np~~ 359 (498)
T KOG4237|consen 353 LLSNPFN 359 (498)
T ss_pred hccCccc
Confidence 9888764
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-11 Score=93.61 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=85.8
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
.+.|.+|.+. .+|.+++++ ..|+++|++. +++. ..++.|+ |+.|-+++|+++ .+|..++....|..|+.+.
T Consensus 102 ~liLy~n~~r-~ip~~i~~L---~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 102 SLILYHNCIR-TIPEAICNL---EALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHhccce-ecchhhhhh---hHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhh
Confidence 3456667773 477777777 7777777777 7776 5555554 777777777774 5666666556677777777
Q ss_pred CcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeee
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g 133 (138)
|.+. .+|..++.+.+ .+.+. . .-.|..||+|+|+++ ++.|++|-|.+|.++.
T Consensus 176 nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 7776 66666666555 22222 2 224888999999998 5789999999999876
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-10 Score=85.58 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=98.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCC-CccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFS-FWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~-~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++.|++.+|.++. +|+..+.+ . +|+.|++++ ++.. ..+..+++|+.|++++|+++ .+|........|+.|+
T Consensus 118 l~~L~l~~n~i~~-i~~~~~~~---~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 118 LTSLDLDNNNITD-IPPLIGLL---KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred eeEEecCCccccc-Cccccccc---hhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 4678899999975 66667666 6 899999999 8888 58899999999999999996 4555444667899999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g 133 (138)
+++|++. .+|........ +++++ ..+.++..+.+++|++. +..+++|++++|+++.
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 9999998 77775433332 33333 56677788888888875 5679999999999875
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-11 Score=95.36 Aligned_cols=128 Identities=21% Similarity=0.310 Sum_probs=106.4
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
..|++.|++. .+|..++.+ ..|+.+.+.. .+.. ..++++..|+++|++.|+++ ..|..+..+ -|+.|-+++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f---~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sN 152 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAF---VSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSN 152 (722)
T ss_pred hhhccccccc-cCchHHHHH---HHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEec
Confidence 4689999996 589999888 8899999988 8887 88999999999999999997 445444333 589999999
Q ss_pred CcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc--C-----CCCcEEEccCCeeeecCCCC
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV--S-----QSWTIIDLGINKFSGQYPRE 138 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~--~-----~~L~~L~Ls~N~l~g~iP~~ 138 (138)
|+++ .+|+.++.+.. .+|.+ +.+.+|+.|+++.|++. | -.|..||+|.|+++- ||.|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~-iPv~ 229 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISY-LPVD 229 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceee-cchh
Confidence 9998 89999996665 77776 66788888899999887 2 457899999999997 8854
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.3e-10 Score=81.25 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=75.9
Q ss_pred CCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEecc
Q 046299 25 FSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISS 101 (138)
Q Consensus 25 ~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~ 101 (138)
+..|+.+|||+ .++. ++..-.+.++.|++|+|.+... .++..+.+|+.||+++|.++ .+-.|=.++.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLG------- 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLG------- 352 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhc-------
Confidence 37789999999 8887 6777788999999999988532 23566778999999999987 5555544443
Q ss_pred CCCceeEEEeeCCccc-------CCCCcEEEccCCeee
Q 046299 102 FQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFS 132 (138)
Q Consensus 102 ~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~ 132 (138)
+++.|.|+.|.|. .-+|..||+++|+|.
T Consensus 353 ---NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 353 ---NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred ---CEeeeehhhhhHhhhhhhHhhhhheeccccccchh
Confidence 4999999999988 468999999999986
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-08 Score=77.52 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=50.7
Q ss_pred CCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCC--CCCCCCCC--e
Q 046299 26 SFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFP--NPIPEMPH--D 96 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p--~~~~~l~~--~ 96 (138)
+.|+.|.++. .++. .....+|+|+.|++..|...+.......-++.|++|++++|++- .++ ...+.++. .
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 5566666666 5555 34456667777777777422222222223446888888888876 444 22333333 2
Q ss_pred EEec------------------cCCCceeEEEeeCCccc
Q 046299 97 VLIS------------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 97 L~ls------------------~~l~~L~~L~ls~N~l~ 117 (138)
+.++ ..+++|++|++..|+|.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 3222 34567777777777775
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-10 Score=90.48 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=82.2
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCC
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSC 80 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n 80 (138)
..+.++|++.- +.+++.-+ +.++.|+|++ +++. +.+..+++|++||+++|.+. .+|..-....+|..|.+++|
T Consensus 168 ~a~fsyN~L~~-mD~SLqll---~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 168 TASFSYNRLVL-MDESLQLL---PALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hhhcchhhHHh-HHHHHHHH---HHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhhhheeeeeccc
Confidence 34667777753 56677777 8899999999 9998 88888999999999999985 44432222235899999999
Q ss_pred cCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeee
Q 046299 81 KMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFS 132 (138)
Q Consensus 81 ~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~ 132 (138)
.++ .+ ..+.+ +.+|+.||+++|-|+ ...|+.|+|.+|.+-
T Consensus 243 ~l~-tL-~gie~----------LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALT-TL-RGIEN----------LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHH-hh-hhHHh----------hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 887 21 11222 445888899998887 356778888888764
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-08 Score=74.31 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=36.0
Q ss_pred CcEEEccCccccCcCCccccCC-CCCCCccEEEccc-cccc----------------ccccCCCCCCEEEcccCcc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSF-PSFSFWTSLIILR-KLAG----------------DIITNLSRLAHMDLSFDLR 58 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l-~~~~~L~~L~Ls~-~l~~----------------~~~~~l~~L~~L~ls~N~l 58 (138)
|+++|||+|.|...-++.+..+ .+|..|++|+|.+ .+.- .-.+.-++|+++..+.|++
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 5788999998854444444322 2237788888877 5543 1234455677777777776
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-08 Score=76.22 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=81.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|+.|++.+|+|.+ +...+..+ ++|++|++++ +++. ..+..++.|+.|++++|.++. + ..+..+..|+.++++
T Consensus 97 l~~l~l~~n~i~~-i~~~l~~~---~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 97 LEALDLYDNKIEK-IENLLSSL---VNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLS 170 (414)
T ss_pred eeeeeccccchhh-cccchhhh---hcchheeccccccccccchhhccchhhheeccCcchh-c-cCCccchhhhcccCC
Confidence 4578888888865 33335667 8888888888 8888 777888888888888888852 2 233446678888888
Q ss_pred CCcCCCCCCCC-CCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCC--CcEEEccCCeeee
Q 046299 79 SCKMGPGFPNP-IPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQS--WTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~-~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~--L~~L~Ls~N~l~g 133 (138)
+|.++. +... ...+.. .+++. ..+..+..+++..|+++ ... ++.+++++|++..
T Consensus 171 ~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 171 YNRIVD-IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred cchhhh-hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc
Confidence 888873 3331 222222 22222 22233444466666666 112 6788888887764
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-07 Score=49.37 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=20.6
Q ss_pred CCCEEEcccCccceeCCCCCccccCcceEEecCCcCC
Q 046299 47 RLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMG 83 (138)
Q Consensus 47 ~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~ 83 (138)
+|++|++++|+|+ .+|+.+..+.+|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666665 34444556666666666666665
|
... |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.6e-08 Score=74.53 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=47.6
Q ss_pred cEEEccCccccCcCC--ccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCCCC-ccccCc
Q 046299 2 KDLFVGNNRLNGTLT--KASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSSGW-IPPFQL 72 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p--~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~~~-~~~~~L 72 (138)
++..|.+..+. ..+ +-...+ ++++.||||. -+.. .....+++|+.|+++.|++........ ....+|
T Consensus 124 ~~IsLdn~~V~-~~~~~~~~k~~---~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 124 REISLDNYRVE-DAGIEEYSKIL---PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred hheeecCcccc-ccchhhhhhhC---CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 34455555552 222 234456 8888888888 6665 445678888888888888753332221 123467
Q ss_pred ceEEecCCcCC
Q 046299 73 NTIILGSCKMG 83 (138)
Q Consensus 73 ~~L~l~~n~l~ 83 (138)
+.|.+++|.++
T Consensus 200 K~L~l~~CGls 210 (505)
T KOG3207|consen 200 KQLVLNSCGLS 210 (505)
T ss_pred heEEeccCCCC
Confidence 77777777776
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.6e-08 Score=71.18 Aligned_cols=100 Identities=10% Similarity=0.119 Sum_probs=58.0
Q ss_pred CCccEEEccc-cccc-------ccccCCCCCCEEEcccCcccee----CCCCCccccCcceEEecCCcCCCCCCCCCCC-
Q 046299 26 SFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFN----FSSGWIPPFQLNTIILGSCKMGPGFPNPIPE- 92 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~- 92 (138)
+.|+.+.+++ .+.. ..|..++.|+.||+.+|-|+.. +...+...++|+++++++|.+...-...+.+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 5566666655 4433 3455566666666666655411 1122222335666666666654221111111
Q ss_pred CCCeEEeccCCCceeEEEeeCCccc-------------CCCCcEEEccCCee
Q 046299 93 MPHDVLISSFQQYVFRVDIYFQQYV-------------SQSWTIIDLGINKF 131 (138)
Q Consensus 93 l~~~L~ls~~l~~L~~L~ls~N~l~-------------~~~L~~L~Ls~N~l 131 (138)
+. ...++|+.+.+.+|.|+ .+.|+.|+|++|.+
T Consensus 265 l~------~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LK------ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred Hh------ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 00 34678999999999998 37899999999998
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.4e-07 Score=63.86 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=68.6
Q ss_pred CCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccC--ccceeCCCCCccccCcceEEecCCcCCCCCCCCC
Q 046299 15 LTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFD--LRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPI 90 (138)
Q Consensus 15 ~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 90 (138)
+....-.. ..|+.+.+.+ .++. ..|..+++|+.|.+|.| ++++.++.....+.+|+++++++|++. ++..+
T Consensus 35 ~~gl~d~~---~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl 109 (260)
T KOG2739|consen 35 LGGLTDEF---VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTL 109 (260)
T ss_pred cccccccc---cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--ccccc
Confidence 44444445 7888888888 8888 88999999999999999 666555554455579999999999996 35665
Q ss_pred CCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 91 PEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 91 ~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
..++. +.+|..|++.+|..+
T Consensus 110 ~pl~~-------l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 110 RPLKE-------LENLKSLDLFNCSVT 129 (260)
T ss_pred chhhh-------hcchhhhhcccCCcc
Confidence 55543 456788888888766
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.9e-06 Score=45.69 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=17.4
Q ss_pred CccEEEccc-cccc-cc-ccCCCCCCEEEcccCccc
Q 046299 27 FWTSLIILR-KLAG-DI-ITNLSRLAHMDLSFDLRT 59 (138)
Q Consensus 27 ~L~~L~Ls~-~l~~-~~-~~~l~~L~~L~ls~N~l~ 59 (138)
+|++|++++ +++. +. +++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 455555555 5555 33 555566666666666554
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.8e-08 Score=73.43 Aligned_cols=126 Identities=12% Similarity=0.117 Sum_probs=92.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.|+... .+..+ +.|+.|++++ .++. ..+..+++|+.+++++|+++..-+.....+.+++.++++
T Consensus 120 L~~L~ls~N~I~~i~--~l~~l---~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 120 LQVLDLSFNKITKLE--GLSTL---TLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred chheecccccccccc--chhhc---cchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 678999999997643 36677 8899999999 9999 888889999999999999974433103456689999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCc--eeEEEeeCCccc--------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQY--VFRVDIYFQQYV--------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~--L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g 133 (138)
+|.+. .+ .++..+.. .+++. ..... |+.+++++|.+. ...+..+|+.+|++..
T Consensus 195 ~n~i~-~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 195 GNSIR-EI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred CCchh-cc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence 99986 22 22222222 22222 12222 889999999988 3678889999998865
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-06 Score=71.70 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=76.6
Q ss_pred CcEEEccCccc-cCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRL-NGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l-~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~ 74 (138)
|++||+++... +...|..++.+ +|.|+.|.+++ .+.. ....++++|..||+|+.+++-. ..+..+.+|+.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~--LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTM--LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred hhhcCccccchhhccHHHHHhhh--CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56788888654 22234455543 29999999999 8876 4567899999999999998522 45667778999
Q ss_pred EEecCCcCCCCCC--CCCCCCCC--eEEec------------------cCCCceeEEEeeCCccc
Q 046299 75 IILGSCKMGPGFP--NPIPEMPH--DVLIS------------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 75 L~l~~n~l~~~~p--~~~~~l~~--~L~ls------------------~~l~~L~~L~ls~N~l~ 117 (138)
|.+.+=.+. ... ..+..+++ +||+| ..++.|+.||.|+..+.
T Consensus 200 L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFE-SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCC-chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 888877775 222 23556666 66666 34566666666666555
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.2e-06 Score=60.97 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=86.2
Q ss_pred CcEEEccCccccCcCCc----cccCCCCCCCccEEEccccccc--------------ccccCCCCCCEEEcccCccceeC
Q 046299 1 MKDLFVGNNRLNGTLTK----ASDSFPSFSFWTSLIILRKLAG--------------DIITNLSRLAHMDLSFDLRTFNF 62 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~----~~~~l~~~~~L~~L~Ls~~l~~--------------~~~~~l~~L~~L~ls~N~l~~~~ 62 (138)
++.++||+|-|.....+ .+.+- .+|+..+++.-++| ..+.+|++|+..++|+|-|....
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~---~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANV---RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhh---cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 46789999999544333 44556 88999999884444 45778999999999999997666
Q ss_pred CCCC----ccccCcceEEecCCcCCCCCCC-CCC----CC---------CC--eEEec----------------cCCCce
Q 046299 63 SSGW----IPPFQLNTIILGSCKMGPGFPN-PIP----EM---------PH--DVLIS----------------SFQQYV 106 (138)
Q Consensus 63 ~~~~----~~~~~L~~L~l~~n~l~~~~p~-~~~----~l---------~~--~L~ls----------------~~l~~L 106 (138)
|+.+ .....|.+|.+.+|.+. .+.. .++ ++ +. +++.. ..-..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 6543 34457999999999986 3322 122 11 11 22222 111466
Q ss_pred eEEEeeCCccc--------------CCCCcEEEccCCeee
Q 046299 107 FRVDIYFQQYV--------------SQSWTIIDLGINKFS 132 (138)
Q Consensus 107 ~~L~ls~N~l~--------------~~~L~~L~Ls~N~l~ 132 (138)
+.+.+..|.|. ..+|+.||+.+|-|+
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 77777777776 367888888888776
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.3e-05 Score=55.92 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=69.5
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCcc-ccCcceEEecCCcCCCCCCCCCCCCCCeEEeccC
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIP-PFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSF 102 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~ 102 (138)
.+...+||++ .+.. ..|..++.|.+|.+++|+|+..-| .+.. ..+|..|.+.+|.|. .+-+ +..+ ..
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~-~l~d-l~pL-------a~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQ-ELGD-LDPL-------AS 111 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchh-hhhh-cchh-------cc
Confidence 5778889988 8887 889999999999999999975444 3333 346999999999986 3222 1111 23
Q ss_pred CCceeEEEeeCCccc------------CCCCcEEEccC
Q 046299 103 QQYVFRVDIYFQQYV------------SQSWTIIDLGI 128 (138)
Q Consensus 103 l~~L~~L~ls~N~l~------------~~~L~~L~Ls~ 128 (138)
+++|++|.+-+|.++ .++++.||.+.
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 567999999999888 57888888764
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-07 Score=62.13 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=53.2
Q ss_pred ccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCCCCccc-cCcceEEecCCcCCCCCCCCCCCCCCeEEec
Q 046299 28 WTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSSGWIPP-FQLNTIILGSCKMGPGFPNPIPEMPHDVLIS 100 (138)
Q Consensus 28 L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls 100 (138)
+..++|++ ++.. ..+.....|+..++++|.+. .+|+.|... +..+.+++++|.++ .+|.++..++.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a----- 101 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA----- 101 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH-----
Confidence 44455555 4442 33445555666677777764 444444333 25667777777776 66666655444
Q ss_pred cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 101 SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 101 ~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
|+.++++.|.+. ..++..||..+|.+.
T Consensus 102 -----Lr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 102 -----LRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred -----hhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 777777777666 244555555555543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.8e-07 Score=75.45 Aligned_cols=95 Identities=15% Similarity=0.009 Sum_probs=71.4
Q ss_pred CCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccC
Q 046299 26 SFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSF 102 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~ 102 (138)
..|...+.++ .+.. .++.-++.|+.|+|++|+++..- .+..+.+|++||+++|.+. .+|.. +. .+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l-~~--------~g 231 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQL-SM--------VG 231 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-ccccc-ch--------hh
Confidence 3455556666 6655 66677888999999999986332 5667778999999999997 56542 11 11
Q ss_pred CCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 103 QQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 103 l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+ +|+.|.+++|.++ .++|+.||+++|-|.+
T Consensus 232 c-~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 232 C-KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred h-hheeeeecccHHHhhhhHHhhhhhhccchhHhhhhc
Confidence 2 3999999999998 6889999999999876
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.9e-06 Score=55.93 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=48.7
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--cccc-CCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIIT-NLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~-~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
.+||+.+.+ +.+++....+..-..|+..++++ .+.. ..|. ..+-++.+++++|.++ .+|..+..++.|+.|+++
T Consensus 31 ~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 31 FLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLR 108 (177)
T ss_pred hcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccc
Confidence 355666655 33444443331114455556666 6655 3332 3345666666666664 555556666666666666
Q ss_pred CCcCCCCCCCCCCCCCC
Q 046299 79 SCKMGPGFPNPIPEMPH 95 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~ 95 (138)
.|.+. ..|..+..+.+
T Consensus 109 ~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 109 FNPLN-AEPRVIAPLIK 124 (177)
T ss_pred cCccc-cchHHHHHHHh
Confidence 66665 55555544433
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00032 Score=54.10 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=70.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc--cccc--ccccCCCCCCEEEcccC-ccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR--KLAG--DIITNLSRLAHMDLSFD-LRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~--~l~~--~~~~~l~~L~~L~ls~N-~l~~~~~~~~~~~~~L~~L 75 (138)
++.|++++|.++. +| .++ .+|+.|++++ .++. ..+ .++|++|++++| .+. .+|. +|+.|
T Consensus 54 l~~L~Is~c~L~s-LP----~LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 54 SGRLYIKDCDIES-LP----VLP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred CCEEEeCCCCCcc-cC----CCC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence 4678888888754 45 231 4688888876 6555 223 247888888887 443 3332 46777
Q ss_pred EecCCcCC--CCCCCCCCCCCC----eEEec---cCC-CceeEEEeeCCccc------CCCCcEEEccCCe
Q 046299 76 ILGSCKMG--PGFPNPIPEMPH----DVLIS---SFQ-QYVFRVDIYFQQYV------SQSWTIIDLGINK 130 (138)
Q Consensus 76 ~l~~n~l~--~~~p~~~~~l~~----~L~ls---~~l-~~L~~L~ls~N~l~------~~~L~~L~Ls~N~ 130 (138)
++..+... +.+|..+..+.- ..... ..+ ++|++|++++|... |.+|+.|+++.|.
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ 188 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecccc
Confidence 77766532 356665543321 00000 112 47889999888765 6789999988763
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=2.5e-05 Score=65.39 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=61.6
Q ss_pred CCccEEEccc-c--ccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eE
Q 046299 26 SFWTSLIILR-K--LAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DV 97 (138)
Q Consensus 26 ~~L~~L~Ls~-~--l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L 97 (138)
++|++|-+.. . +.. ..|..++.|++||+++|.=-+.+|..++.+.+|++|++++..+. .+|..+++++. +|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 5566666655 3 333 44777888888888887655677888877888888888888887 78888877777 55
Q ss_pred Eec------------cCCCceeEEEeeCCc
Q 046299 98 LIS------------SFQQYVFRVDIYFQQ 115 (138)
Q Consensus 98 ~ls------------~~l~~L~~L~ls~N~ 115 (138)
++. ..+.+|++|.+..-.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 555 225566666665544
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.60 E-value=2.5e-05 Score=65.40 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=51.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|||++|.=-+.+|+.++.+ -+|++|++++ .++. ..++++..|.+|++..+.-...+|.....+.+|++|.+
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~L---i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGEL---VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred eEEEECCCCCccCcCChHHhhh---hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 4567777765556677777777 7777777777 7776 66777777777777776543334444444666777766
Q ss_pred cCCc
Q 046299 78 GSCK 81 (138)
Q Consensus 78 ~~n~ 81 (138)
..-.
T Consensus 650 ~~s~ 653 (889)
T KOG4658|consen 650 PRSA 653 (889)
T ss_pred eccc
Confidence 5443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=2.3e-05 Score=64.06 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=76.5
Q ss_pred CCccEEEccc--cccc----ccccCCCCCCEEEcccCccc-eeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--e
Q 046299 26 SFWTSLIILR--KLAG----DIITNLSRLAHMDLSFDLRT-FNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--D 96 (138)
Q Consensus 26 ~~L~~L~Ls~--~l~~----~~~~~l~~L~~L~ls~N~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~ 96 (138)
.+|++||+++ .+.. ..-..+|+|+.|.+++=.+. ..+...+.+.++|..||+++.+++ .+ ..++++++ +
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 5789999988 4443 33456899999999886663 122233445668999999999997 33 44566666 3
Q ss_pred EEec-------------cCCCceeEEEeeCCccc---------------CCCCcEEEccCCeeee
Q 046299 97 VLIS-------------SFQQYVFRVDIYFQQYV---------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 97 L~ls-------------~~l~~L~~L~ls~N~l~---------------~~~L~~L~Ls~N~l~g 133 (138)
|.+. -.+++|+.||+|..+.. .+.|+.||.|+..+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 3333 56899999999988765 5799999999887764
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=7.7e-05 Score=55.14 Aligned_cols=31 Identities=6% Similarity=-0.077 Sum_probs=18.5
Q ss_pred CCceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 103 QQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 103 l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
++.+..|+|+.|+|. .+.+..|.++.|++..
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 445556666666665 3566666666666544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=7.8e-06 Score=60.27 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=14.5
Q ss_pred CCccEEEccc-cccc---ccccCCCCCCEEEccc
Q 046299 26 SFWTSLIILR-KLAG---DIITNLSRLAHMDLSF 55 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~ 55 (138)
.+|+.|.+.+ ++.+ ..++.-.+|+.++++.
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 4455555554 4444 3444444455555544
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00012 Score=32.71 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.9
Q ss_pred CcEEEccCccccCcCCccccCC
Q 046299 1 MKDLFVGNNRLNGTLTKASDSF 22 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l 22 (138)
|++||+++|+|+ .+|++|++|
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT-
T ss_pred ccEEECCCCcCE-eCChhhcCC
Confidence 689999999998 678777654
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00015 Score=32.40 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=10.0
Q ss_pred cceEEecCCcCCCCCCCCCC
Q 046299 72 LNTIILGSCKMGPGFPNPIP 91 (138)
Q Consensus 72 L~~L~l~~n~l~~~~p~~~~ 91 (138)
|++|++++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4555443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0025 Score=49.32 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=66.8
Q ss_pred CCccEEEccc-cccc-ccccCCC-CCCEEEcccC-ccceeCCCCCccccCcceEEecCC-cCCCCCCCCCCCCCCeEEec
Q 046299 26 SFWTSLIILR-KLAG-DIITNLS-RLAHMDLSFD-LRTFNFSSGWIPPFQLNTIILGSC-KMGPGFPNPIPEMPHDVLIS 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~-~L~~L~ls~N-~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~l~~~L~ls 100 (138)
.+++.|++++ .++. + .++ +|+.|.++++ .+ ..+|..+ +.+|++|++++| .+. .+|..+.. |+++
T Consensus 52 ~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sLe~----L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-GLPESVRS----LEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-ccccccce----EEeC
Confidence 8899999999 8887 5 333 6999999874 44 3556544 248999999999 565 77876653 3333
Q ss_pred --------cCCCceeEEEeeCCc-cc--------CCCCcEEEccCCeee
Q 046299 101 --------SFQQYVFRVDIYFQQ-YV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 101 --------~~l~~L~~L~ls~N~-l~--------~~~L~~L~Ls~N~l~ 132 (138)
.-.++|+.|.+.+++ .. |++|++|++++|...
T Consensus 121 ~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 121 GSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred CCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 222467888775432 11 678999999988865
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0018 Score=45.38 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=67.2
Q ss_pred ccEEEccc-cccc-ccccC-CCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCC
Q 046299 28 WTSLIILR-KLAG-DIITN-LSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQ 104 (138)
Q Consensus 28 L~~L~Ls~-~l~~-~~~~~-l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~ 104 (138)
=+.+++.+ ++.. ..++- +.+...+|+++|.+. . -..+..+..|.+|.+.+|.|+ .+.+.+.. .++
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt-~I~p~L~~---------~~p 88 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRIT-RIDPDLDT---------FLP 88 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchh-h-cccCCCccccceEEecCCcce-eeccchhh---------hcc
Confidence 44555555 5544 22322 346788999999984 2 235566778999999999999 55555544 245
Q ss_pred ceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 105 YVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 105 ~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
+|..|.+.+|.|. .+.|++|-+-+|+.+.
T Consensus 89 ~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 89 NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 6999999999998 4789999999998753
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=2.7e-05 Score=57.46 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=39.4
Q ss_pred CCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCC
Q 046299 26 SFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSC 80 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n 80 (138)
+.|+++|||. .++. ..++.+.+|+.|.+-++++.-.+-..+....+|+.++++.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 4699999999 8887 66788999999999999986444333444445555555544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0012 Score=48.42 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=59.4
Q ss_pred CCccEEEccc-cccc-------ccccCCCCCCEEEcccCccce---e-------CCCCCccccCcceEEecCCcCCCCCC
Q 046299 26 SFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTF---N-------FSSGWIPPFQLNTIILGSCKMGPGFP 87 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~---~-------~~~~~~~~~~L~~L~l~~n~l~~~~p 87 (138)
..+..++||+ -|.. ..+.+-.+|+..++|.-.... . +-+.+..+++|+..+++.|.|...+|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 7788899998 7766 456677788888887653311 1 11345567799999999999998888
Q ss_pred CCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 88 NPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 88 ~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+.++.+-+ ..+.|++|.+++|.+-
T Consensus 110 e~L~d~is------~~t~l~HL~l~NnGlG 133 (388)
T COG5238 110 EELGDLIS------SSTDLVHLKLNNNGLG 133 (388)
T ss_pred hHHHHHHh------cCCCceeEEeecCCCC
Confidence 87665433 2234666667666654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0012 Score=49.05 Aligned_cols=15 Identities=7% Similarity=-0.166 Sum_probs=9.6
Q ss_pred CCCceeEEEeeCCcc
Q 046299 102 FQQYVFRVDIYFQQY 116 (138)
Q Consensus 102 ~l~~L~~L~ls~N~l 116 (138)
.++.++.|.+|.|.+
T Consensus 144 ~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSL 158 (418)
T ss_pred cchhhhhhhhccchh
Confidence 445577777777744
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0038 Score=45.10 Aligned_cols=78 Identities=9% Similarity=0.006 Sum_probs=52.1
Q ss_pred CCCCCCEEEcccCccceeCCCCCccccCcceEEecCC--cCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----
Q 046299 44 NLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSC--KMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---- 117 (138)
Q Consensus 44 ~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n--~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---- 117 (138)
.+..|+.+.+.+-.++.. ..+-.+.+|++|.++.| ++.+.++..... +++|++++++.|+|.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~----------~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK----------APNLKVLNLSGNKIKDLST 108 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhh----------CCceeEEeecCCccccccc
Confidence 344555566665555421 23445668999999999 555444443333 356999999999998
Q ss_pred ------CCCCcEEEccCCeeee
Q 046299 118 ------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 ------~~~L~~L~Ls~N~l~g 133 (138)
..+|..||+.+|.-+.
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcchhhhhcccCCccc
Confidence 3678889998886553
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0028 Score=26.44 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=7.7
Q ss_pred CCcEEEccCCeeeecCC
Q 046299 120 SWTIIDLGINKFSGQYP 136 (138)
Q Consensus 120 ~L~~L~Ls~N~l~g~iP 136 (138)
+|+.|++++|+|+. +|
T Consensus 2 ~L~~L~l~~n~L~~-lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS-LP 17 (17)
T ss_dssp T-SEEEETSS--SS-E-
T ss_pred ccCEEECCCCCCCC-Cc
Confidence 56667777777654 44
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.089 Score=33.33 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=42.2
Q ss_pred ccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCC-CCCC
Q 046299 17 KASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPN-PIPE 92 (138)
Q Consensus 17 ~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~ 92 (138)
..|.++ ++|+.+.+...++. ..|.++++|+.+.+..+ +...-...|..+.+++.+.+.+ .+. .++. .+..
T Consensus 6 ~~F~~~---~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~ 79 (129)
T PF13306_consen 6 NAFYNC---SNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSN 79 (129)
T ss_dssp TTTTT----TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT
T ss_pred HHHhCC---CCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccc
Confidence 345566 77888877652222 77888888888888775 5444445566666788888865 433 2333 3443
Q ss_pred CCCeEEeccCCCceeEEEeeCC
Q 046299 93 MPHDVLISSFQQYVFRVDIYFQ 114 (138)
Q Consensus 93 l~~~L~ls~~l~~L~~L~ls~N 114 (138)
+.+ ++.+++..+
T Consensus 80 ~~~----------l~~i~~~~~ 91 (129)
T PF13306_consen 80 CTN----------LKNIDIPSN 91 (129)
T ss_dssp -TT----------ECEEEETTT
T ss_pred ccc----------ccccccCcc
Confidence 444 666666544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.089 Score=33.32 Aligned_cols=87 Identities=10% Similarity=0.026 Sum_probs=49.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|+.+.+.. .+..+...+|..+ ++++.+.+...+.. ..|.++++++.+.+.. .+.......|..+.+++.+.+
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~---~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNC---TSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT----TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCEEEECC-CeeEeChhhcccc---cccccccccccccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 34556653 4555555667777 89999998763333 7899998899999976 443344456666788999999
Q ss_pred cCCcCCCCCCCCCCCC
Q 046299 78 GSCKMGPGFPNPIPEM 93 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l 93 (138)
..+ +...-...+...
T Consensus 89 ~~~-~~~i~~~~f~~~ 103 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC 103 (129)
T ss_dssp TTT--BEEHTTTTTT-
T ss_pred Ccc-ccEEchhhhcCC
Confidence 775 542223344443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.001 Score=48.92 Aligned_cols=79 Identities=13% Similarity=0.051 Sum_probs=47.3
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCC--CCccccCcceEEec
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSS--GWIPPFQLNTIILG 78 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~--~~~~~~~L~~L~l~ 78 (138)
.|+.-++.|+.+ .....+ +.|++|.||- +++. ..|..+++|++|+|..|.|. .+.+ .+.++++|+.|++.
T Consensus 23 KLNcwg~~L~DI--sic~kM---p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 23 KLNCWGCGLDDI--SICEKM---PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhcccCCCccHH--HHHHhc---ccceeEEeeccccccchhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhc
Confidence 455556655442 223456 6777777777 7777 77777777777777777763 1111 22345567777777
Q ss_pred CCcCCCCCC
Q 046299 79 SCKMGPGFP 87 (138)
Q Consensus 79 ~n~l~~~~p 87 (138)
.|.=.|.-+
T Consensus 97 ENPCc~~ag 105 (388)
T KOG2123|consen 97 ENPCCGEAG 105 (388)
T ss_pred cCCcccccc
Confidence 776554433
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.00046 Score=50.73 Aligned_cols=80 Identities=10% Similarity=-0.056 Sum_probs=53.5
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCC
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQ 103 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l 103 (138)
.+.+.|+..+ .+.+ .....|+.|++|.||-|.|+..- .+..+++|++|+|..|.|. .+.+- .-+ .++
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL-~YL-------knl 87 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDEL-EYL-------KNL 87 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHH-HHH-------hcC
Confidence 4556677777 7777 66678888899999999886332 3456778889999888886 33221 111 234
Q ss_pred CceeEEEeeCCcc
Q 046299 104 QYVFRVDIYFQQY 116 (138)
Q Consensus 104 ~~L~~L~ls~N~l 116 (138)
++|+.|.|..|.=
T Consensus 88 psLr~LWL~ENPC 100 (388)
T KOG2123|consen 88 PSLRTLWLDENPC 100 (388)
T ss_pred chhhhHhhccCCc
Confidence 5577777777753
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.021 Score=26.53 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=11.1
Q ss_pred CCCcEEEccCCeeeecCCC
Q 046299 119 QSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 119 ~~L~~L~Ls~N~l~g~iP~ 137 (138)
.+|+.|++++|+++. +|+
T Consensus 2 ~~L~~L~vs~N~Lt~-LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTS-LPE 19 (26)
T ss_pred cccceeecCCCcccc-Ccc
Confidence 456666666666665 553
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.032 Score=25.54 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=6.7
Q ss_pred CCCCEEEcccCccc
Q 046299 46 SRLAHMDLSFDLRT 59 (138)
Q Consensus 46 ~~L~~L~ls~N~l~ 59 (138)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.032 Score=25.54 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=6.7
Q ss_pred CCCCEEEcccCccc
Q 046299 46 SRLAHMDLSFDLRT 59 (138)
Q Consensus 46 ~~L~~L~ls~N~l~ 59 (138)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.0019 Score=46.42 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=56.6
Q ss_pred CCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccC
Q 046299 26 SFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSF 102 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~ 102 (138)
.+-+.||++. ++.. ..|+.++.+..||++.|.+. ..|..+.....++.+++..|..+ ..|.+++..+.
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~------- 112 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH------- 112 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC-------
Confidence 7777788777 6665 67777777888888888774 56666666666777777777776 67777766554
Q ss_pred CCceeEEEeeCCccc
Q 046299 103 QQYVFRVDIYFQQYV 117 (138)
Q Consensus 103 l~~L~~L~ls~N~l~ 117 (138)
++++++-.|.+.
T Consensus 113 ---~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 ---PKKNEQKKTEFF 124 (326)
T ss_pred ---cchhhhccCcch
Confidence 666666666655
|
|
| >smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.13 Score=23.88 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=9.6
Q ss_pred CCCCCEEEcccCccc
Q 046299 45 LSRLAHMDLSFDLRT 59 (138)
Q Consensus 45 l~~L~~L~ls~N~l~ 59 (138)
+++|+.|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356677777777664
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.12 Score=23.08 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=7.3
Q ss_pred CCCCEEEcccCccc
Q 046299 46 SRLAHMDLSFDLRT 59 (138)
Q Consensus 46 ~~L~~L~ls~N~l~ 59 (138)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666654
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.0043 Score=44.70 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=64.8
Q ss_pred ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--
Q 046299 40 DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV-- 117 (138)
Q Consensus 40 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~-- 117 (138)
..+......+.||++.|++. .....|.-++.+..++++.|++. ..|+.++.+.. ++.+++..|..+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e----------~~~~~~~~n~~~~~ 103 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRE----------TVNAASHKNNHSQQ 103 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHH----------HHHHHhhccchhhC
Confidence 55677788899999999984 45556666778999999999997 78888876655 788888888887
Q ss_pred ------CCCCcEEEccCCeee
Q 046299 118 ------SQSWTIIDLGINKFS 132 (138)
Q Consensus 118 ------~~~L~~L~Ls~N~l~ 132 (138)
.++++++++..|.|.
T Consensus 104 p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred CccccccCCcchhhhccCcch
Confidence 367888888888764
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=88.23 E-value=0.39 Score=22.43 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=8.5
Q ss_pred CCCCEEEcccCcc
Q 046299 46 SRLAHMDLSFDLR 58 (138)
Q Consensus 46 ~~L~~L~ls~N~l 58 (138)
++|++|||++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3566777777766
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.57 E-value=0.05 Score=38.25 Aligned_cols=58 Identities=9% Similarity=-0.015 Sum_probs=34.5
Q ss_pred CCccEEEccc-cccc---ccccCCCCCCEEEcccCcccee--CCCCCccccCcceEEecCCc-CC
Q 046299 26 SFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFN--FSSGWIPPFQLNTIILGSCK-MG 83 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~--~~~~~~~~~~L~~L~l~~n~-l~ 83 (138)
..++.+|-++ .+.. +.+.+++.++.|.+.++.--.. +..--....+|+.|++++|. ||
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 3577778777 6665 6677777777777766642100 00000123478888888774 54
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 138 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 9e-04 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 37.2 bits (87), Expect = 9e-04
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 34/163 (20%)
Query: 4 LFVGNNRLNGTLTKASDSFPSFSFWTSLIILR----KLAGDI---ITNLSRLAHMDLS-- 54
+ + NNRL G + +L IL+ +G+I + + L +DL+
Sbjct: 495 ISLSNNRLTGEIP------KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 55 -------------FDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISS 101
NF +G + N + C + S
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 102 FQQYVFRVDIYFQQYVSQSW------TIIDLGINKFSGQYPRE 138
+ + + S ++ +D+ N SG P+E
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 138 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.89 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.89 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.88 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.86 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.86 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.86 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.85 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.85 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.85 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.85 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.85 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.85 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.85 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.84 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.83 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.83 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.83 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.83 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.83 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.83 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.83 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.83 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.82 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.82 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.81 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.81 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.81 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.81 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.81 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.81 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.8 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.8 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.8 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.8 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.8 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.8 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.8 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.79 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.79 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.79 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.79 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.79 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.79 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.79 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.78 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.78 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.78 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.78 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.78 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.78 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.78 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.78 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.78 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.77 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.77 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.77 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.77 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.77 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.77 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.77 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.77 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.77 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.76 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.76 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.76 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.76 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.76 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.76 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.76 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.76 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.75 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.75 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.75 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.75 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.75 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.75 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.75 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.74 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.74 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.73 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.72 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.72 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.72 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.72 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.72 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.72 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.72 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.71 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.71 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.7 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.69 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.69 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.69 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.69 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.69 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.68 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.68 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.68 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.67 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.67 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.65 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.65 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.65 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.64 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.63 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.62 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.61 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.61 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.58 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.57 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.56 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.55 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.55 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.55 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.54 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.54 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.54 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.53 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.47 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.46 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.46 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.43 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.39 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.35 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.32 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.28 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.1 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.02 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.93 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.92 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.78 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.77 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.76 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.64 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.63 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.63 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.53 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.41 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.33 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.31 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.25 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.88 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.7 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.68 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.3 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.27 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.23 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.13 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.02 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.95 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.94 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.92 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 81.1 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-23 Score=166.52 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=99.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCc---------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWI--------- 67 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~--------- 67 (138)
|++|++++|++++.+|.+++.+ ++|++|++++ ++++ ..++.+++|++|++++|+++|.+|..+.
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRL---ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGC---TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCEEEccCCccCCcCChHHhcC---CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 4566777777766667777766 7777777777 6665 5667777777777777777665554321
Q ss_pred -------------------------------------------------------------cccCcceEEecCCcCCCCC
Q 046299 68 -------------------------------------------------------------PPFQLNTIILGSCKMGPGF 86 (138)
Q Consensus 68 -------------------------------------------------------------~~~~L~~L~l~~n~l~~~~ 86 (138)
.+.+|++|++++|+++|.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 2345777888888888888
Q ss_pred CCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecCCC
Q 046299 87 PNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 87 p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
|.+++.++. +|+++ +.+++|++||+++|+++ .+.|++||+++|+++|.||.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 888887777 78877 56778889999999888 36788999999999999885
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=147.87 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=81.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCC-CCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLS-RLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~-~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++.+|..++.+ ++|++|++++ ++++ ..+..++ +|++|++++|++++.+|..+..+. |++|
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSL---PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGC---TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCEEeCCCCccCCcCChHHhcC---CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 3455555555555555555555 5555555555 5543 4445554 555555555555555555554443 6666
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
++++|++++.+|..+..+++ +|+++ ..+++|++|++++|+++ .++|++|++++|+++|
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 66666665556666666666 66666 34577888888888876 3678888888888888
Q ss_pred cCCC
Q 046299 134 QYPR 137 (138)
Q Consensus 134 ~iP~ 137 (138)
.+|.
T Consensus 283 ~ip~ 286 (313)
T 1ogq_A 283 EIPQ 286 (313)
T ss_dssp ECCC
T ss_pred cCCC
Confidence 8875
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=148.65 Aligned_cols=134 Identities=18% Similarity=0.319 Sum_probs=88.4
Q ss_pred CcEEEccC-ccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGN-NRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~-N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++ |.+++.+|..|+.+ ++|++|++++ ++++ ..|.++++|++|++++|.+++.+|..+..+.+|++|
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKL---TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGC---TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCeeeCCCCCcccccCChhHhcC---CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 46677773 66766677777777 7777777776 6664 556666677777777776666666666666666666
Q ss_pred EecCCcCCCCCCCCCCCCC-C--eEEec-----------------------------------cCCCceeEEEeeCCccc
Q 046299 76 ILGSCKMGPGFPNPIPEMP-H--DVLIS-----------------------------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~-~--~L~ls-----------------------------------~~l~~L~~L~ls~N~l~ 117 (138)
++++|++++.+|..+..+. . +++++ ..+++|++|++++|+++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 6666666666666666555 3 55554 34556666666666665
Q ss_pred --------CCCCcEEEccCCeeeecCCC
Q 046299 118 --------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 118 --------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+++|++|++++|+++|.+|.
T Consensus 235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp CBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred eecCcccccCCCCEEECcCCcccCcCCh
Confidence 35677777777777776664
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-22 Score=137.67 Aligned_cols=134 Identities=16% Similarity=0.087 Sum_probs=106.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..+..++.+ ++|++|++++ ++++ ..|..+++|++|++++|++++..+..+..+.+|++|+
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDEL---TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEcCCCccCcCChhhhccc---ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 5789999999988777778889 9999999999 9988 5588999999999999999866666677888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--CCCCcEEEccCCeeeecCCC
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+++|++++..+..+..+++ +|+++ ..+++|++|++++|.+. .++++.|+++.|+++|.+|+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBBC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceeec
Confidence 9999998655556777777 66665 33566777777777666 55677777777777776664
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=136.32 Aligned_cols=131 Identities=13% Similarity=0.067 Sum_probs=111.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|.+++..|..|+.+ ++|++|++++ ++++ ..|..+++|++|++++|++++..+..+..+.+|++|+
T Consensus 37 l~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 37 TEKLDLQSTGLATLSDATFRGL---TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEccCCCcCccCHhHhcCc---ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 5789999999998888889999 9999999999 9988 5689999999999999999877777778888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..+..+..+++ +|+++ +.+++|++|++++|+++ .++|+.|++++|++++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 9999998555555777777 88887 45678999999999988 3678899999999876
Q ss_pred c
Q 046299 134 Q 134 (138)
Q Consensus 134 ~ 134 (138)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=140.43 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=96.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++ + +.++.+ ++|++|++++ .+++ ..|..+++|++|++++|++++..+..+..+.+|++|+
T Consensus 65 L~~L~l~~n~l~~-~-~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 65 VRYLALGGNKLHD-I-SALKEL---TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CCEEECTTSCCCC-C-GGGTTC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEECCCCCCCC-c-hhhcCC---CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 5678888888766 2 367777 7888888887 7777 4477778888888888887766665666777788888
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++.+
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 8888887555555666666 77776 34677888888888887 3678888888888877
Q ss_pred cCC
Q 046299 134 QYP 136 (138)
Q Consensus 134 ~iP 136 (138)
..|
T Consensus 220 ~~~ 222 (272)
T 3rfs_A 220 TCP 222 (272)
T ss_dssp CTT
T ss_pred cCc
Confidence 655
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=134.52 Aligned_cols=130 Identities=15% Similarity=0.101 Sum_probs=94.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|++++..+..|..+ ++|++|++++ ++++ ..|..+++|++|++++|.++...+..+..+.+|++|+
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRL---TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSC---TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCEEECcCCCCCeeCHHHhcCC---CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 4678888888877666677777 8888888888 7777 4567788888888888887765555666677788888
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|++|++++|++++
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 8888777555555666666 77776 34567777777777776 2567777777777765
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=156.97 Aligned_cols=134 Identities=19% Similarity=0.287 Sum_probs=111.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++.+|..++.+ ++|++|++++ ++++ ..|+.+++|++|++++|.+++.+|..+..+.+|++|+
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNC---SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGC---TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred ccEEECCCCccccccCHHHhcC---CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 5677778888877788888888 8888888888 8876 6778888888888888888888888888888888888
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++.+|.++..+++ +|+++ +.+++|++|++++|+++ .++|++||+++|+++|
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 8888888888888888777 78877 45678999999999987 4789999999999999
Q ss_pred cCCC
Q 046299 134 QYPR 137 (138)
Q Consensus 134 ~iP~ 137 (138)
.+|.
T Consensus 553 ~ip~ 556 (768)
T 3rgz_A 553 TIPA 556 (768)
T ss_dssp BCCG
T ss_pred cCCh
Confidence 9985
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=134.31 Aligned_cols=130 Identities=16% Similarity=0.095 Sum_probs=69.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCc-cceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDL-RTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++..+..|..+ ++|++|++++ .+++ ..|..+++|++|++++|. ++...|..+..+.+|++|
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRAC---RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred ceEEEeeCCcCCccCHHHcccC---CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3556666666655555555555 6666666665 5555 445555666666666664 443334455555555555
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeee
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFS 132 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~ 132 (138)
++++|++++..|..+..+++ +|+++ +.+++|++|++++|+++ .++|+.|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 55555555444444555544 55554 23445555555555544 234444455544444
Q ss_pred e
Q 046299 133 G 133 (138)
Q Consensus 133 g 133 (138)
+
T Consensus 191 ~ 191 (285)
T 1ozn_A 191 H 191 (285)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=132.92 Aligned_cols=121 Identities=18% Similarity=0.187 Sum_probs=105.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..|..|..+ ++|++|++++ +++. ..|..+++|++|++++|++++..+..+..+.+|++|+
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSL---INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEcCCCccCccCHHHhhCc---cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 5789999999999888889999 9999999999 9887 5588999999999999999877666678888999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecC
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQY 135 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~i 135 (138)
+++|+++ .+|..+..+++ |++|++++|+|+ .++|+.|++++|++.+..
T Consensus 119 Ls~N~l~-~lp~~~~~l~~----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTH----------LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTT----------CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCccc-ccCcccccCCC----------CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999998 88888876655 999999999998 368999999999988643
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=131.13 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=95.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|+|++..+..|..+ ++|++|++++ ++++ ..|.++++|++|++++|+++...+..|..+.+|++|+
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPY---KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTC---TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCCcCHhHhhCC---CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 4678888888877666677788 8888888888 8877 6788888888888888888755555566777888888
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..|..+..+++ |++|++++|+|+ .++|+.|++++|++..
T Consensus 111 L~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHN----------LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTT----------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCEeCHHHcCCCCC----------CCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8888888666777776555 999999999998 3678999999999864
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=132.81 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=67.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..+..++.+ ++|++|++++ ++++ ..|+.+++|++|++++|.+++..+..+..+.+|++|+
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKL---TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCccChhHhcCC---cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 3455555555555444444555 5555555555 5554 2345555555555555555444443344445555555
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--CCCCcEEEccCCeeeecCC
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--~~~L~~L~Ls~N~l~g~iP 136 (138)
+++|++++..|..+..+++ +|+++ ..+++|++|++++|.+. .++++.++++.|.++|.+|
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBB
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCccc
Confidence 5555555333333444444 45544 23445555555555555 3445555555555555554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-21 Score=149.00 Aligned_cols=120 Identities=16% Similarity=0.081 Sum_probs=97.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|||++|+|++..|.+|.++ ++|++|+|++ ++++ ..|.++++|++|++++|++++..+..|..+.+|++|+
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l---~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTC---TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCEEEeeCCCCCCCCHHHHhCC---CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 5799999999999888899999 9999999999 9998 5799999999999999999877777788899999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..+..++++++ |++|++++|+++ .++|++|++++|++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~----------L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKT----------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTT----------CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCcCCCCChhhhhcCcc----------cCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9999999665667888776 555555555553 2445555555555554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=133.47 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=87.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-c-ccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-K-LAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~-l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++..|..|..+ ++|++|++++ . ++. ..|..+++|++|++++|.+++..+..+..+.+|++|
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGL---ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCCccceeCHhhcCCc---cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 5677777777777667777777 7777777777 5 555 556777777777777777766656666666677777
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeee
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFS 132 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~ 132 (138)
++++|++++..+..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|+++
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 77777776444445666666 66666 33556666677666665 245666666666666
Q ss_pred e
Q 046299 133 G 133 (138)
Q Consensus 133 g 133 (138)
+
T Consensus 215 ~ 215 (285)
T 1ozn_A 215 A 215 (285)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=135.14 Aligned_cols=132 Identities=12% Similarity=0.072 Sum_probs=106.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+++|++++|++++..|..|..+ ++|++|++++ .+++ ...+.+++|++|++++|+++ .+|..+..+.+|++|+++
T Consensus 33 l~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 33 TTILHLSENLLYTFSLATLMPY---TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp CCEEECTTSCCSEEEGGGGTTC---TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCEEEcCCCcCCccCHHHhhcC---CCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 5788999999988778888888 9999999999 8888 55578888888888888886 667777777788888888
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQY 135 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~i 135 (138)
+|++++..|..+..+++ +|+++ ..+++|+.|++++|+|+ .++|+.|++++|+++. +
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-C
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-c
Confidence 88888555567777777 78877 35678888888888887 3678888888888875 6
Q ss_pred CC
Q 046299 136 PR 137 (138)
Q Consensus 136 P~ 137 (138)
|.
T Consensus 188 p~ 189 (290)
T 1p9a_G 188 PK 189 (290)
T ss_dssp CT
T ss_pred Ch
Confidence 64
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-21 Score=140.73 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=42.3
Q ss_pred CCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEE
Q 046299 45 LSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVD 110 (138)
Q Consensus 45 l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ 110 (138)
+++|++|++++|.++ .+|..+..+.+|++|++++|+++ .+|..+..+++ +|+++ +.+++|++|+
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 333333333333333 33333333444444444444444 23334444444 44444 3344555555
Q ss_pred eeCCccc---------CCCCcEEEccCCeeeecCCC
Q 046299 111 IYFQQYV---------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 111 ls~N~l~---------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+++|++. .++|+.|++++|++.|.+|.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 5555443 24556666666666665553
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=131.19 Aligned_cols=121 Identities=14% Similarity=0.075 Sum_probs=86.8
Q ss_pred cEEEccCccccCcCC-ccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 2 KDLFVGNNRLNGTLT-KASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p-~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++|++++|+|++..| ..|..+ ++|++|++++ ++++ ..|.++++|++|++++|.+++..+..+..+.+|++|+
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l---~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKL---PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CEEEcCCCcCCccCchhhhccC---CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 566777777766533 345666 7777777777 7766 3577777777777777777665555566666777777
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecC
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQY 135 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~i 135 (138)
+++|++++..|..+..++ +|++|++++|+|+ .++|+.|++++|++++..
T Consensus 112 Ls~N~l~~~~~~~~~~l~----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLS----------SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CTTSCCCCBCTTSSTTCT----------TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCCCcCCeECHhHcCCCc----------cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 777777766666666554 4999999999998 368999999999998643
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=138.50 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=66.3
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCcc---------c
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIP---------P 69 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~---------~ 69 (138)
++|++++|.++ .+|..++.+ ++|++|++++ +++. ..|+++++|++|++++|++.+.+|..+.. +
T Consensus 107 ~~L~L~~n~l~-~lp~~~~~l---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 107 QHMTIDAAGLM-ELPDTMQQF---AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp SEEEEESSCCC-CCCSCGGGG---TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CEEECCCCCcc-chhHHHhcc---CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 44555555554 344444455 5555555555 4444 34455555555555554444444444332 4
Q ss_pred cCcceEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc---------CCCCcEEEcc
Q 046299 70 FQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLG 127 (138)
Q Consensus 70 ~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls 127 (138)
.+|++|++++|+++ .+|..++.+++ +|+++ ..+++|++|++++|++. .++|++|+++
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 45555555555554 45555554444 44444 33455555555555544 2455566666
Q ss_pred CCeeeecCCC
Q 046299 128 INKFSGQYPR 137 (138)
Q Consensus 128 ~N~l~g~iP~ 137 (138)
+|++.+.+|.
T Consensus 262 ~n~~~~~~p~ 271 (328)
T 4fcg_A 262 DCSNLLTLPL 271 (328)
T ss_dssp TCTTCCBCCT
T ss_pred CCCchhhcch
Confidence 6655555553
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=140.50 Aligned_cols=130 Identities=11% Similarity=0.042 Sum_probs=102.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|++++..|..|..+ ++|++|++++ ++++ ..|.++++|++|++++|+++...+..+..+.+|++|+
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHL---HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred ccEEECcCCcCceECHHHcCCC---CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 5789999999998888889999 9999999999 8888 6788999999999999999876666788888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+++|+++...+..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc
Confidence 9999998555556777766 77766 34566777777777666 3456666666666655
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=128.99 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=113.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..+..|..+ ++|++|++++ ++++ ..|..+++|++|++++|.+++..+..+..+.+|++|+
T Consensus 63 L~~L~l~~n~l~~i~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 63 LRLLYLNDNKLQTLPAGIFKEL---KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTSSC---TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCeeChhhhcCC---CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 6899999999987666667889 9999999999 9988 5788999999999999999877777788888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..+..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++..
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 9999998555555778877 88887 45689999999999998 3689999999999875
Q ss_pred c
Q 046299 134 Q 134 (138)
Q Consensus 134 ~ 134 (138)
.
T Consensus 220 ~ 220 (270)
T 2o6q_A 220 T 220 (270)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=135.07 Aligned_cols=129 Identities=15% Similarity=0.113 Sum_probs=63.8
Q ss_pred cEEEccCccccCcCC-ccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccce-eCCCCCccccCcceE
Q 046299 2 KDLFVGNNRLNGTLT-KASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTF-NFSSGWIPPFQLNTI 75 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p-~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~~~~L~~L 75 (138)
++|++++|++++..+ ..+..+ ++|++|++++ .+++ ..|..+++|++|++++|.+++ ..|..+..+.+|++|
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSL---RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTC---TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CEEECCCCcccccccchhhhhc---cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 344444444443322 234444 5555555555 4443 334455555555555555543 344444555555555
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc----------CCCCcEEEccCCee
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKF 131 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l 131 (138)
++++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ +++|++|++++|++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 55555555444555555544 45554 23445555555555554 13555555555555
Q ss_pred ee
Q 046299 132 SG 133 (138)
Q Consensus 132 ~g 133 (138)
++
T Consensus 261 ~~ 262 (306)
T 2z66_A 261 AC 262 (306)
T ss_dssp EC
T ss_pred ec
Confidence 54
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=140.32 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=109.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++.+|..++.+ ++|++|++++ ++++ ..|.++++|++|++++|.+++..|..+..+.+|++|+
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHF---TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ceEEEecCccccccchhhcccC---CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 5788999999998888889999 9999999999 8888 5788999999999999999877788888888999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecCCC
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+++|++++..|.++..+++ |++|++++|+++ .++|++|++++|++++.+|.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPN----------LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTT----------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhcccccc----------ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999998777888887665 999999999998 36899999999999998873
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=132.47 Aligned_cols=133 Identities=13% Similarity=0.143 Sum_probs=119.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++ +|..+..+ ++|++|++++ ++++ ..|..+++|++|++++|.+++..+..+..+.+|++|
T Consensus 80 L~~L~Ls~n~i~~-l~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 80 LKYLDLSFNGVIT-MSSNFLGL---EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CCEEECCSCSEEE-EEEEEETC---TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred cCEEECCCCcccc-ChhhcCCC---CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 6899999999975 77789999 9999999999 9888 368999999999999999998888888888999999
Q ss_pred EecCCcCCC-CCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 76 ILGSCKMGP-GFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 76 ~l~~n~l~~-~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
++++|.+++ .+|..+..+++ +|+++ ..+++|++|++++|+++ .++|++||+++|++
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 999999986 58888998888 89988 56789999999999998 37899999999999
Q ss_pred eecCCC
Q 046299 132 SGQYPR 137 (138)
Q Consensus 132 ~g~iP~ 137 (138)
++..|.
T Consensus 236 ~~~~~~ 241 (306)
T 2z66_A 236 MTSKKQ 241 (306)
T ss_dssp CBCSSS
T ss_pred cccCHH
Confidence 986653
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=138.11 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=100.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++.|++++|++++..+..|.++ ++|++|++++ ++++ ..|.++++|++|++++|+++...+..+..+.+|++|+
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l---~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHL---RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSC---SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CcEEEccCCcCCeeCHHHhhCC---CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4788999999988878888888 9999999998 8887 6788899999999999988766666777888899999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeec
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~ 134 (138)
+++|+++...+..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 9999888555556777766 77766 34566777777777666 35666666666666653
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=137.88 Aligned_cols=133 Identities=12% Similarity=0.080 Sum_probs=102.5
Q ss_pred CcEEEccCccccCcCCccc--cCCCCCCCccEEEccc-cccc--ccccCC-----CCCCEEEcccCccceeCCCCCcccc
Q 046299 1 MKDLFVGNNRLNGTLTKAS--DSFPSFSFWTSLIILR-KLAG--DIITNL-----SRLAHMDLSFDLRTFNFSSGWIPPF 70 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~--~~l~~~~~L~~L~Ls~-~l~~--~~~~~l-----~~L~~L~ls~N~l~~~~~~~~~~~~ 70 (138)
|++|++++|++++.+|..+ +.+ ++|++|++++ ++++ ..++.+ ++|++|++++|++++..|..+..+.
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATG---PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCS---CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred ccEEEccCCcccchhHHHHHHhcC---CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 5789999999988888876 788 8999999999 8887 455555 8899999999999877778888888
Q ss_pred CcceEEecCCcCCCC--CCCCC--CCCCC--eEEec---------------cCCCceeEEEeeCCccc----------CC
Q 046299 71 QLNTIILGSCKMGPG--FPNPI--PEMPH--DVLIS---------------SFQQYVFRVDIYFQQYV----------SQ 119 (138)
Q Consensus 71 ~L~~L~l~~n~l~~~--~p~~~--~~l~~--~L~ls---------------~~l~~L~~L~ls~N~l~----------~~ 119 (138)
+|++|++++|++.+. +|..+ ..+++ +|+++ ..+++|++|++++|+++ ++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 899999999987754 23333 55666 77777 24567888888888776 25
Q ss_pred CCcEEEccCCeeeecCCC
Q 046299 120 SWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 120 ~L~~L~Ls~N~l~g~iP~ 137 (138)
+|++|++++|+|+ .+|.
T Consensus 254 ~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp TCCEEECTTSCCS-SCCS
T ss_pred CCCEEECCCCccC-hhhh
Confidence 6777788877777 3664
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=130.05 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=78.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..+..|+.+ ++|++|++++ ++++ ..|.++++|++|++++|.+++..+..+..+.+|++|+
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTC---TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccEEECCCCcccccCHhHhccc---cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 4677888888877666677777 7888888877 7776 4577777888888888877766666666667777777
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~ 117 (138)
+++|++++..+..+..+++ +|+++ ..+++|++|++++|+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 7777776544445666655 56655 23456666666666655
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=127.07 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=107.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.++. +| .+..+ ++|++|++++ .++. ..+..+++|++|++++|.+++..+..+..+.+|++|+++
T Consensus 46 L~~L~l~~n~i~~-l~-~l~~l---~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 46 LTYITLANINVTD-LT-GIEYA---HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp CCEEEEESSCCSC-CT-TGGGC---TTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred ccEEeccCCCccC-hH-HHhcC---CCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5789999999974 66 68888 9999999999 8888 889999999999999999988778888889999999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 99999778888888887 77776 44677888888888887 4778888888888765
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=135.37 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=80.8
Q ss_pred CcEEEccCccccCcCCcccc-CCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASD-SFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~-~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
++.|+|++|+|++..+..+. .+ ++|++|+|++ ++++ ..|.++++|++|++++|+++...+..|..+.+|++|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l---~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRL---TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCCCCccChhhhhhcc---cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 46889999999887777776 88 9999999999 8888 568899999999999999987777778888899999
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
++++|++++..|..+..+++ +|+++
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECC
Confidence 99999998777788887776 44444
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=129.94 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=66.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..+..|..+ ++|++|++++ .+++ ..|.++++|++|++++|.+++..+..+..+.+|++|+
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSL---SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTC---TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CcEEECCCCcCCccCHHHccCC---cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 5677777777776666667777 7777777777 7766 4567777777777777777655554566666777777
Q ss_pred ecCCcCCC-CCCCCCCCCCC--eEEec
Q 046299 77 LGSCKMGP-GFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 77 l~~n~l~~-~~p~~~~~l~~--~L~ls 100 (138)
+++|++++ .+|..+..+++ +|+++
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CcCCccceecCchhhccCCCCCEEECC
Confidence 77777764 24666666665 66665
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=139.34 Aligned_cols=133 Identities=16% Similarity=0.072 Sum_probs=117.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|.+++..|..|+++ ++|++|++++ ++++ ..|+++++|++|++++|++++..|..+..+.+|++|+
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRL---INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTC---TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcEEEccCCccCcCChhHhccC---ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 5789999999999889999999 9999999999 9988 6799999999999999999988899999999999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCc--EEEccCCee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWT--IIDLGINKF 131 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~--~L~Ls~N~l 131 (138)
+++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++++ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 9999999666778888888 88887 23678999999999888 46677 899999999
Q ss_pred eecCC
Q 046299 132 SGQYP 136 (138)
Q Consensus 132 ~g~iP 136 (138)
++..|
T Consensus 192 ~~~~~ 196 (606)
T 3t6q_A 192 AGIEP 196 (606)
T ss_dssp CEECT
T ss_pred CccCh
Confidence 88554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-20 Score=123.08 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=107.0
Q ss_pred CcEEEccCcccc-CcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLN-GTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~-~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|++++|.++ +.+|..+..+ ++|++|++++ .+++ ..|..+++|++|++++|.+++.+|..+..+.+|++|++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l---~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEF---VNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGG---GGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred CCEEECCCCCCChhhHHHHHHhC---CCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 689999999998 6789888999 9999999999 9999 89999999999999999998777766666889999999
Q ss_pred cCCcCCCCCC--CCCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEccCCeeeecCCC
Q 046299 78 GSCKMGPGFP--NPIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 78 ~~n~l~~~~p--~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
++|++++ +| ..+..+++ |++|++++|+++ .++|++|++++|.+.. +|.
T Consensus 103 s~N~l~~-~~~~~~l~~l~~----------L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~ 164 (168)
T 2ell_A 103 SGNKLKD-ISTLEPLKKLEC----------LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APD 164 (168)
T ss_dssp BSSSCCS-SGGGGGGSSCSC----------CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred cCCccCc-chhHHHHhcCCC----------CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence 9999984 44 56766555 999999999998 3689999999999987 664
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=135.45 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=88.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|++++..|..|..+ ++|++|++++ .+++ ..|.++++|++|++++|+++...+..+..+.+|++|+
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASF---PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CcEEECCCCccceECHhHccCC---CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 4677777777777666777777 7777777777 7766 5677777777777777777654444566666777777
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|.+++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 7777777666666666666 66665 34566777777777665 3556666666666655
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=135.83 Aligned_cols=114 Identities=12% Similarity=0.128 Sum_probs=99.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|+++ ++|++|++++ ++++ ..|.++++|++|++++|.+++..+..+..+.+|++|+
T Consensus 58 L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 58 LEELELNENIVSAVEPGAFNNL---FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCEeChhhhhCC---ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 6899999999998889999999 9999999999 9988 5688999999999999999888888888888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~ 117 (138)
+++|.+++..|..+..+++ +|+++ ..+++|+.|++++|+++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999998777888888887 78877 45677888888887776
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-19 Score=121.37 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=100.0
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--c--cccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--D--IITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~--~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++++++|+++ .+|..+. .++++|++++ ++++ . .|+.+++|++|++++|++++..|..+..+.+|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcC-cCccCCC-----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 57899999995 4776543 5789999999 9988 2 388999999999999999988888898899999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecCC
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~iP 136 (138)
+++|++++..|..+..+++ |++|++++|+|+ .++|++|++++|++++..|
T Consensus 85 Ls~N~l~~~~~~~~~~l~~----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQ----------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSCCCCEECSSSSTTCTT----------CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCccCHHHhcCCCC----------CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999999777777877665 999999999988 3688999999999987543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=123.18 Aligned_cols=127 Identities=11% Similarity=0.104 Sum_probs=110.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
++++++++.++. +|..+. ++++.|++++ ++++ ..|.++++|++|++++|.+++..+..+..+.+|++|++
T Consensus 17 ~~l~~~~~~l~~-~p~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 17 KEVDCQGKSLDS-VPSGIP-----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp TEEECTTCCCSS-CCSCCC-----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eEEecCCCCccc-cCCCCC-----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 578999999975 666543 6799999999 9998 57999999999999999999888888888999999999
Q ss_pred cCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeec
Q 046299 78 GSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~ 134 (138)
++|++++..|..+..+++ +|+++ ..+++|++|++++|+|+ .++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999999666677888888 89988 45789999999999998 37899999999999973
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=136.03 Aligned_cols=130 Identities=10% Similarity=0.111 Sum_probs=101.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++..|..|+.+ ++|++|++++ .+.+ ..|.++++|++|++++|.+++..|..+..+.+|++|
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRL---QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSC---TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred cCEEEecCCccCcCChhHhccC---ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 5899999999999889999999 9999999999 8875 569999999999999999998889999999999999
Q ss_pred EecCCcCCCCCCCC--CCCCCC--eEEec-------------cCCCceeEEEeeCCccc-----------CCCCcEEEcc
Q 046299 76 ILGSCKMGPGFPNP--IPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV-----------SQSWTIIDLG 127 (138)
Q Consensus 76 ~l~~n~l~~~~p~~--~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~-----------~~~L~~L~Ls 127 (138)
++++|++++.+|.. +..+++ +|+++ ..+++|++|++++|+++ ..+++.++++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999998755554 777766 55554 23455555555555554 1344555555
Q ss_pred CCeeee
Q 046299 128 INKFSG 133 (138)
Q Consensus 128 ~N~l~g 133 (138)
+|.+++
T Consensus 189 ~n~l~~ 194 (455)
T 3v47_A 189 SITLQD 194 (455)
T ss_dssp TCBCTT
T ss_pred cCcccc
Confidence 555544
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=139.30 Aligned_cols=97 Identities=15% Similarity=0.008 Sum_probs=67.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCC-C------------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSS-G------------ 65 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~-~------------ 65 (138)
|++|++++|.+++..|..|+.+ ++|++|+|++ .+++ ..|+.+++|++|++++|.+++..+. .
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPF---TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTC---TTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred ccEEEeeCCcCCCCCHHHHhCC---CCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 5789999999999888899999 9999999999 9988 5588888888888888877543211 0
Q ss_pred ---CccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 66 ---WIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 66 ---~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
...+.+|++|++++|.+++..|..++.++. +|+++
T Consensus 113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 001224555555555555444545554444 55554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-19 Score=131.27 Aligned_cols=129 Identities=11% Similarity=0.043 Sum_probs=87.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|+.+ ++|++|++++ .+++ ..|+++++|++|++++|.++...+..+..+.+|++|+
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYA---HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEECCCCcccccChhhccCC---CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 5677777777777666677777 7788888877 7776 4577777888888888877643333356677788888
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec---------cCCCceeEEEeeCCccc----CCCCcEEEccCCeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS---------SFQQYVFRVDIYFQQYV----SQSWTIIDLGINKFS 132 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls---------~~l~~L~~L~ls~N~l~----~~~L~~L~Ls~N~l~ 132 (138)
+++|++++..|..+..+++ +|+++ ..+++|+.+++++|.++ +.+++.|++++|.++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence 8888877666666777666 67766 34556666666666555 344555555555544
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=138.60 Aligned_cols=131 Identities=15% Similarity=0.068 Sum_probs=82.8
Q ss_pred CcEEEccCccccCcCC-ccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccce-eCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLT-KASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTF-NFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p-~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~~~~L~~ 74 (138)
|++|++++|++++..| ..+..+ ++|++|++++ .+++ ..|..+++|++|++++|.+++ .+|..+..+.+|++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSL---EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTC---TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCeeECCCCccCCccChhhhhcc---ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence 4556666666655554 455566 6666666666 6655 456666666666666666665 35556666666777
Q ss_pred EEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 75 IILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 75 L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
|++++|++++..|.++..+++ +|+++ ..+++|++|++++|+++ +++|+++++++|++
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 777777776666666666666 66665 34566777777777766 13477777777776
Q ss_pred eec
Q 046299 132 SGQ 134 (138)
Q Consensus 132 ~g~ 134 (138)
.+.
T Consensus 558 ~c~ 560 (606)
T 3vq2_A 558 ACI 560 (606)
T ss_dssp CCS
T ss_pred ccC
Confidence 653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-19 Score=138.48 Aligned_cols=129 Identities=11% Similarity=0.043 Sum_probs=98.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|+.+ ++|++|++++ .+++ ..|+++++|++|++++|.++...+..|..+.+|++|+
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYA---HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEECCCCCCCCCChHHhcCC---CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 5788999999988777788888 8999999998 8888 5678899999999999988755555567788899999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec---------cCCCceeEEEeeCCccc----CCCCcEEEccCCeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS---------SFQQYVFRVDIYFQQYV----SQSWTIIDLGINKFS 132 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls---------~~l~~L~~L~ls~N~l~----~~~L~~L~Ls~N~l~ 132 (138)
+++|.+++..|..+..+++ +|+++ +.+++|+.|++++|.++ +.+++.|++++|.++
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 9999998777778888887 88887 44566666666666665 444555555555443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-19 Score=137.59 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=108.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|++++..+..|.++ ++|++|++++ ++++ ..|+++++|++|++++|.+++..|..+..+.+|++|+
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNF---SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTC---TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred cCEEECCCCCcCEeChhhccCC---ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 5789999999998888889999 9999999999 8888 6789999999999999999888888899999999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc---C----------CCCcEEEccC
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV---S----------QSWTIIDLGI 128 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~---~----------~~L~~L~Ls~ 128 (138)
+++|++++..|..++++++ +|+++ +.+++|++|++++|+++ + ..+.++++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 9999998666677888887 77776 45677888888888877 1 1144788888
Q ss_pred Ceeee
Q 046299 129 NKFSG 133 (138)
Q Consensus 129 N~l~g 133 (138)
|.+++
T Consensus 191 n~l~~ 195 (606)
T 3vq2_A 191 NPIDF 195 (606)
T ss_dssp CCCCE
T ss_pred CCcce
Confidence 88876
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=132.04 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=85.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCcccc------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPF------ 70 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~------ 70 (138)
|++|++++|++++..|..|.++ ++|++|++++ ++++ ..|..+++|++|++++|.++...+..+..+.
T Consensus 101 L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 101 LEVLQLGRNSIRQIEVGAFNGL---ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcChhhccCc---ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 5788888888887777788888 8888888888 8777 4577788888888888887655444444444
Q ss_pred -------------------CcceEEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc
Q 046299 71 -------------------QLNTIILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 71 -------------------~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~ 117 (138)
+|++|++++|+++ .+| .+..+++ +|+++ ..+++|++|++++|+++
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 4555555555554 233 2334444 55554 44566667777777666
Q ss_pred ---------CCCCcEEEccCCeeee
Q 046299 118 ---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 ---------~~~L~~L~Ls~N~l~g 133 (138)
.++|+.|+|++|++++
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSC
T ss_pred eECHHHhcCCCCCCEEECCCCcCCc
Confidence 3567777777777775
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.5e-19 Score=142.73 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=113.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
+++|||++|.+++..|..|..+ ++|++|++++ ...+ ..|.++++|++|++++|.+++..|..+..+.+|++|
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l---~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFL---EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSC---CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred cCEEECCCCcCCccChhHCccc---ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 5799999999999889999999 9999999999 6665 679999999999999999998889999999999999
Q ss_pred EecCCcCCCCCCCC--CCCCCC--eEEec-------------cCCCceeEEEeeCCccc---------C--CCCcEEEcc
Q 046299 76 ILGSCKMGPGFPNP--IPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV---------S--QSWTIIDLG 127 (138)
Q Consensus 76 ~l~~n~l~~~~p~~--~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~---------~--~~L~~L~Ls 127 (138)
++++|.+++.+|.. +..+++ +||++ +.+++|++|++++|+++ . ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999999877765 888888 88887 45788999999999886 1 566777777
Q ss_pred CCeeeecCC
Q 046299 128 INKFSGQYP 136 (138)
Q Consensus 128 ~N~l~g~iP 136 (138)
.|.+++.+|
T Consensus 183 ~n~l~~~~~ 191 (844)
T 3j0a_A 183 ANSLYSRVS 191 (844)
T ss_dssp CSBSCCCCC
T ss_pred CCccccccc
Confidence 777666544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=125.19 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=92.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|++++|.+++..+ .+.+ ++|++|++++ +++. ..+..+++|++|++++|++++..+..|..+.+|++|++
T Consensus 57 L~~L~L~~n~l~~~~~--~~~l---~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 57 LTQLNLDRAELTKLQV--DGTL---PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp CCEEECTTSCCCEEEC--CSCC---TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred CCEEECCCCccCcccC--CCCC---CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 5677777777765332 2566 7777777777 7776 55667777777777777776555566666777777777
Q ss_pred cCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeeee
Q 046299 78 GSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g 133 (138)
++|++++..+..+..+++ +|+++ ..+++|++|++++|+|+ ..+++.+++++|++..
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 777777444444566665 67766 34678999999999998 3579999999999864
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-19 Score=139.92 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=112.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|.+++..+..|+.+ ++|++|++++ .+++ ..|+++++|++|++++|.++...+..+..+.+|++|+
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRY---SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGG---TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CcEEECCCCCCCCcCHHHHhCC---CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 5789999999988777788899 9999999999 8887 6688899999999999999765555688888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc-----------CCCCcEEEccCCee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV-----------SQSWTIIDLGINKF 131 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~-----------~~~L~~L~Ls~N~l 131 (138)
+++|++++..|..++.+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 9999998666677888888 88887 35778999999999887 26789999999999
Q ss_pred eecCC
Q 046299 132 SGQYP 136 (138)
Q Consensus 132 ~g~iP 136 (138)
++..|
T Consensus 184 ~~~~~ 188 (680)
T 1ziw_A 184 KEFSP 188 (680)
T ss_dssp CCBCT
T ss_pred cccCh
Confidence 88554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-19 Score=129.74 Aligned_cols=129 Identities=15% Similarity=0.090 Sum_probs=69.7
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCC-CCCccccCcceEE
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFS-SGWIPPFQLNTII 76 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~~~~L~~L~ 76 (138)
++|++++|++++..|..|+.+ ++|++|++++ ++++ ..|+++++|++|++++|+++...+ ..+..+.+|++|+
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 79 QALVLTSNGINTIEEDSFSSL---GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CEEECCCCccCccCHhhcCCC---CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 445555555554444445555 5555555555 5554 224555555555555555542222 2344455555555
Q ss_pred ecCC-cCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeee
Q 046299 77 LGSC-KMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFS 132 (138)
Q Consensus 77 l~~n-~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~ 132 (138)
+++| .+++..|..+..+++ +++++ ..+++|++|++++|+++ .++|+.|++++|.++
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 5555 244333444555554 55554 34556667777777665 367777888887777
Q ss_pred e
Q 046299 133 G 133 (138)
Q Consensus 133 g 133 (138)
+
T Consensus 236 ~ 236 (353)
T 2z80_A 236 T 236 (353)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=130.82 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=82.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCcccc------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPF------ 70 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~------ 70 (138)
|++|+|++|.+++..+..|.++ ++|++|++++ ++++ ..|..+++|++|++++|.++...+..+..+.
T Consensus 90 L~~L~Ls~n~i~~i~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 90 LEILQLSRNHIRTIEIGAFNGL---ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CCEEECCSSCCCEECGGGGTTC---SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCccChhhccCC---ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 5677777777777666777777 7777777777 7776 4577777777777777777654444444444
Q ss_pred -------------------CcceEEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc
Q 046299 71 -------------------QLNTIILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 71 -------------------~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~ 117 (138)
+|++|++++|+++ .+|. +..+++ +|+++ ..+++|+.|++++|+++
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 4555555555554 3432 334444 55555 34566677777777666
Q ss_pred ---------CCCCcEEEccCCeeeecCC
Q 046299 118 ---------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 118 ---------~~~L~~L~Ls~N~l~g~iP 136 (138)
.++|+.|+|++|++++ +|
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~-~~ 271 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTL-LP 271 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCC-CC
T ss_pred EEChhhhcCCCCCCEEECCCCCCCc-cC
Confidence 3667778888887776 44
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-19 Score=130.06 Aligned_cols=57 Identities=21% Similarity=0.151 Sum_probs=49.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTF 60 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~ 60 (138)
|++|++++|++++..|..|+.+ ++|++|++++ ++++ ..|..+++|++|++++|.+++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPF---TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTC---TTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE
T ss_pred CCEEECcCCccCcCCHHHhhCC---CcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc
Confidence 5789999999998777889999 9999999999 9988 558888899999998888764
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.4e-19 Score=135.36 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=105.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCC-CCccccCcc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSS-GWIPPFQLN 73 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~L~ 73 (138)
|++|++++|++++.+|..++.+ ++|++|++++ ++++ ..|+.+++|++|++++|.+++.+|. .+..+.+|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHL---TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCC---SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred ccEEEeECCccChhhhhhhccC---CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 5789999999998888999999 9999999999 9886 4588999999999999999875554 366777899
Q ss_pred eEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 74 TIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 74 ~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
+|++++|++++.+|..+. ++ +|+++ ..+++|++|++++|+|+ .++|++|++++|++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 999999999888777764 23 67776 45678888888888887 25688888888888
Q ss_pred eec
Q 046299 132 SGQ 134 (138)
Q Consensus 132 ~g~ 134 (138)
++.
T Consensus 481 ~c~ 483 (520)
T 2z7x_B 481 DCS 483 (520)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=135.78 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=95.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|++++|.+++. |..+..+ ++|++|++++ .+++ ..|..+++|++|++++|.+++..|..+..+.+|++|
T Consensus 375 L~~L~l~~n~l~~~-~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 375 LKYLDLSFNGVITM-SSNFLGL---EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp CCEEECCSCSEEEE-EEEEETC---TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cCEEECCCCccccc-ccccccc---CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 45666666666553 3336666 7777777777 6665 356677777777777777776667677777777777
Q ss_pred EecCCcCC-CCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 76 ILGSCKMG-PGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 76 ~l~~n~l~-~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
++++|+++ +.+|..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 77777776 457777777776 77776 45677899999999887 36788999999999
Q ss_pred eecCCC
Q 046299 132 SGQYPR 137 (138)
Q Consensus 132 ~g~iP~ 137 (138)
++.+|.
T Consensus 531 ~~~~~~ 536 (570)
T 2z63_A 531 DCSCPR 536 (570)
T ss_dssp CCCTTT
T ss_pred cCCCcc
Confidence 887764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=126.30 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=68.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|++++..+..|+.+ ++|++|++++ ++++ ..|+.+++|++|++++|.++ .+|..+. .+|++|+
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNL---KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CeEEECCCCcCCEeChhhhccC---CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 5678899999888777788888 8999999988 8887 67888889999999988886 4554443 3667777
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
+++|++++..+..+..+++ +++++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCCcccccCHhHhcCCccccEEECC
Confidence 7777666444444454444 45544
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=142.70 Aligned_cols=128 Identities=11% Similarity=0.217 Sum_probs=82.6
Q ss_pred CcEEEccCccccCc-----------------CCcccc--CCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCc
Q 046299 1 MKDLFVGNNRLNGT-----------------LTKASD--SFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDL 57 (138)
Q Consensus 1 L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~ 57 (138)
|++|++++|.+++. +|+.++ ++ ++|++|++++ ++.+ ..|+++++|++|++++|+
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL---KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC---TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhccc---CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 56778888887775 777777 77 7788888877 7666 567777777777777776
Q ss_pred -cce-eCCCCCccc------cCcceEEecCCcCCCCCCC--CCCCCCC--eEEec-----------cCCCceeEEEeeCC
Q 046299 58 -RTF-NFSSGWIPP------FQLNTIILGSCKMGPGFPN--PIPEMPH--DVLIS-----------SFQQYVFRVDIYFQ 114 (138)
Q Consensus 58 -l~~-~~~~~~~~~------~~L~~L~l~~n~l~~~~p~--~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N 114 (138)
+++ .+|..+..+ .+|++|++++|+++ .+|. .++.+++ +|+++ +.+++|++|++++|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 766 666655544 56777777777776 6666 6666665 56555 12234555555555
Q ss_pred ccc--------CCC-CcEEEccCCeee
Q 046299 115 QYV--------SQS-WTIIDLGINKFS 132 (138)
Q Consensus 115 ~l~--------~~~-L~~L~Ls~N~l~ 132 (138)
+++ .++ |++|++++|+++
T Consensus 364 ~l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 364 QITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred ccccccHhhhhhcccCcEEEccCCcCc
Confidence 554 123 555555555554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=130.58 Aligned_cols=132 Identities=10% Similarity=-0.017 Sum_probs=112.4
Q ss_pred CcEEEccCccc-cCcCCcccc-------CCCCCCCccEEEccc-cccc---ccc--cCCCCCCEEEcccCccceeCCCCC
Q 046299 1 MKDLFVGNNRL-NGTLTKASD-------SFPSFSFWTSLIILR-KLAG---DII--TNLSRLAHMDLSFDLRTFNFSSGW 66 (138)
Q Consensus 1 L~~L~Ls~N~l-~~~~p~~~~-------~l~~~~~L~~L~Ls~-~l~~---~~~--~~l~~L~~L~ls~N~l~~~~~~~~ 66 (138)
|++|++++|.+ .+.+|..+. .+ ++|++|++++ ++++ ..+ ..+++|++|++++|++++. |..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 140 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGI---SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL 140 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTT---SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCc---CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH
Confidence 35678999998 455777665 78 9999999999 9987 443 8999999999999999876 7666
Q ss_pred ccc-----cCcceEEecCCcCCCCCCCCCCCCCC--eEEec----------------cCCCceeEEEeeCCccc------
Q 046299 67 IPP-----FQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS----------------SFQQYVFRVDIYFQQYV------ 117 (138)
Q Consensus 67 ~~~-----~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls----------------~~l~~L~~L~ls~N~l~------ 117 (138)
..+ .+|++|++++|++++..|..++.+++ +|+++ ..+++|++|++++|+|+
T Consensus 141 ~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence 665 79999999999999777789999988 99988 35689999999999998
Q ss_pred ------CCCCcEEEccCCeeeecCC
Q 046299 118 ------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 118 ------~~~L~~L~Ls~N~l~g~iP 136 (138)
.++|++|++++|++++.+|
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHHHhcCCCCCEEECCCCcCCcccc
Confidence 2799999999999998654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=115.20 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=107.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.++.+++.++. +|..+ . +++++|++++ ++++ ..|..+++|++|++++|+++...+..+..+.+|++|++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--P---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--C---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCccC-CCCCC--C---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 467888888865 55443 4 7899999999 9998 56899999999999999998666666778889999999
Q ss_pred cCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeec
Q 046299 78 GSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~ 134 (138)
++|++++..+..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|.+.+.
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 999999655556788887 88887 45689999999999988 36899999999999887
Q ss_pred CC
Q 046299 135 YP 136 (138)
Q Consensus 135 iP 136 (138)
.|
T Consensus 164 ~~ 165 (208)
T 2o6s_A 164 CP 165 (208)
T ss_dssp TT
T ss_pred CC
Confidence 66
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-19 Score=130.72 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=107.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..+..+..+ ++|++|++++ ++++ ..|+++++|++|++++|+++...+..+..+.+|++|+
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRC---VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred CcEEECCCCcCcccCHHHhccC---CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 5789999999988777789999 9999999999 9998 5699999999999999999854444477788999999
Q ss_pred ecCCcCCCCCCC--CCCCCCC--eEEec-------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCe
Q 046299 77 LGSCKMGPGFPN--PIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINK 130 (138)
Q Consensus 77 l~~n~l~~~~p~--~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~ 130 (138)
+++|+++ .+|. .+..+++ +++++ ..+++|++|++++|+++ .++|++|++++|+
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 9999998 5665 6777777 77776 45678888999988887 3678888898888
Q ss_pred eee
Q 046299 131 FSG 133 (138)
Q Consensus 131 l~g 133 (138)
++.
T Consensus 210 l~~ 212 (353)
T 2z80_A 210 HIL 212 (353)
T ss_dssp STT
T ss_pred ccc
Confidence 753
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=135.14 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=21.2
Q ss_pred ccCCCCCCEEEcccCccceeCCCC-CccccCcceEEecCCcCCCCCCCCCCCCCC
Q 046299 42 ITNLSRLAHMDLSFDLRTFNFSSG-WIPPFQLNTIILGSCKMGPGFPNPIPEMPH 95 (138)
Q Consensus 42 ~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~ 95 (138)
|..+++|++|++++|.+++..+.. +..+.+|++|++++|.+++..|..+..+++
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 333444444444444433332222 333334444444444444333444444433
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=125.88 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=91.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~ 74 (138)
|++|++++|++++..+..+..+ ++|++|++++ .++. ..|.++++|++|++++|.++ .+|..+. .+|++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~ 196 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGL---NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTE 196 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTC---TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSE
T ss_pred ccEEECCCCcccccCHhHhcCC---ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCE
Confidence 4566677777766555667777 8888888887 7753 56777778888888887775 3444433 46777
Q ss_pred EEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 75 IILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 75 L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
|++++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|++|++++|+++
T Consensus 197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 888888777666677777766 77776 34567888888888777 356778888888887
Q ss_pred ecCC
Q 046299 133 GQYP 136 (138)
Q Consensus 133 g~iP 136 (138)
+ +|
T Consensus 277 ~-~~ 279 (330)
T 1xku_A 277 A-IG 279 (330)
T ss_dssp C-CC
T ss_pred c-cC
Confidence 6 44
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-19 Score=142.94 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=104.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-c-ccc----ccccCC------CCCCEEEcccCccceeCCC--CC
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-K-LAG----DIITNL------SRLAHMDLSFDLRTFNFSS--GW 66 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~-l~~----~~~~~l------~~L~~L~ls~N~l~~~~~~--~~ 66 (138)
|++|++++|++.+.+|+.++++ ++|++|++++ + +++ ..++.+ ++|++|++++|+++ .+|. .+
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKAL---PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTC---SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred CCEEEecCCcCCccChHHHhcC---CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 6899999999999999999999 9999999999 7 875 444444 88888888888887 7777 77
Q ss_pred ccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCc-eeEEEeeCCccc--C--------CCCc
Q 046299 67 IPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQY-VFRVDIYFQQYV--S--------QSWT 122 (138)
Q Consensus 67 ~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~-L~~L~ls~N~l~--~--------~~L~ 122 (138)
..+.+|++|++++|+++|.+| .+..+++ +|+++ ..+++ |++|++++|+++ | ++|+
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence 788888888888888888888 7766666 77776 34456 888888888877 1 2577
Q ss_pred EEEccCCeeeecCCC
Q 046299 123 IIDLGINKFSGQYPR 137 (138)
Q Consensus 123 ~L~Ls~N~l~g~iP~ 137 (138)
+|++++|+++|.+|.
T Consensus 406 ~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 406 AIDFSYNEIGSVDGK 420 (636)
T ss_dssp EEECCSSCTTTTTTC
T ss_pred EEECcCCcCCCcchh
Confidence 788888887776553
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=134.14 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=100.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCC-CCccccCcc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSS-GWIPPFQLN 73 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~L~ 73 (138)
|++|++++|++++.+|..++.+ ++|++|++++ ++++ ..|.++++|++|++++|.+++.+|. .+..+.+|+
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTL---KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSC---SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred ceEEECCCCccccchhhhhccc---CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 5788999999988888888888 9999999998 8886 3578899999999999998874554 466677888
Q ss_pred eEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 74 TIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 74 ~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
+|++++|++++.+|..+. ++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 999999988877777664 23 66666 34567788888888777 24677788888877
Q ss_pred eec
Q 046299 132 SGQ 134 (138)
Q Consensus 132 ~g~ 134 (138)
++.
T Consensus 510 ~c~ 512 (562)
T 3a79_B 510 DCT 512 (562)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=124.80 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=36.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.+++. +. +..+ ++|++|++++ ++++ ..+..+++|++|++++|.+++. + .+..+.+|++|+++
T Consensus 65 L~~L~L~~n~i~~~-~~-~~~l---~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 65 LIGLELKDNQITDL-AP-LKNL---TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLD 137 (308)
T ss_dssp CCEEECCSSCCCCC-GG-GTTC---CSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECC
T ss_pred CCEEEccCCcCCCC-hh-HccC---CCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECC
Confidence 34555555555442 22 4445 5555555555 5554 4455555555555555554322 1 13334444444444
Q ss_pred CCcCC
Q 046299 79 SCKMG 83 (138)
Q Consensus 79 ~n~l~ 83 (138)
+|+++
T Consensus 138 ~n~l~ 142 (308)
T 1h6u_A 138 LNQIT 142 (308)
T ss_dssp SSCCC
T ss_pred CCccC
Confidence 44444
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-19 Score=128.30 Aligned_cols=81 Identities=12% Similarity=-0.044 Sum_probs=62.9
Q ss_pred CcEEEccCccccCcCCccc--cCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCccceeCCCCCcccc
Q 046299 1 MKDLFVGNNRLNGTLTKAS--DSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFNFSSGWIPPF 70 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~--~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~ 70 (138)
|++|++++|.+++..|..+ +.+ ++|++|++++ .+++ ..+..+++|++|++++|.+++..+..+..+.
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~---~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATG---LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCC---BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred eeEEEeeCCEeccchhhhhhhccC---CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 5788999999988888877 777 8888888888 7775 2334677888888888888776667777777
Q ss_pred CcceEEecCCcCCC
Q 046299 71 QLNTIILGSCKMGP 84 (138)
Q Consensus 71 ~L~~L~l~~n~l~~ 84 (138)
+|++|++++|++.+
T Consensus 170 ~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 170 ALTSLDLSDNPGLG 183 (310)
T ss_dssp TCCEEECCSCTTCH
T ss_pred CCCEEECCCCCCcc
Confidence 88888888887653
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-18 Score=132.03 Aligned_cols=133 Identities=16% Similarity=0.084 Sum_probs=110.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|.+++..+.+|.++ ++|++|++++ ++++ ..|+++++|++|++++|.++...|..+..+.+|++|+
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTC---SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccEEEccCCccCccChhHhhCC---CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 5789999999998888889999 9999999999 9988 6799999999999999999888888899999999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc---------CCCC----cEEEccC
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV---------SQSW----TIIDLGI 128 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~---------~~~L----~~L~Ls~ 128 (138)
+++|++++..+..++.+++ +|+++ +.+++|++|++++|+++ ..++ +.+++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 9999998544446888877 77776 34567888888888876 1344 6788888
Q ss_pred CeeeecCC
Q 046299 129 NKFSGQYP 136 (138)
Q Consensus 129 N~l~g~iP 136 (138)
|.+++..|
T Consensus 187 n~l~~~~~ 194 (570)
T 2z63_A 187 NPMNFIQP 194 (570)
T ss_dssp CCCCEECT
T ss_pred CCceecCH
Confidence 88877433
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-19 Score=135.89 Aligned_cols=129 Identities=18% Similarity=0.139 Sum_probs=103.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..|..|+.+ ++|++|++++ ++++ ..|+++++|++|++++|.+++..|..+..+.+|++|+
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRAC---ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred ccEEECcCCccCccChhhhhcC---CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 5789999999998888899999 9999999999 9988 5799999999999999999877766688888999999
Q ss_pred ecCCcCCC-CCCCCCCCCCC--eEEec-------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 77 LGSCKMGP-GFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 77 l~~n~l~~-~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
+++|++++ .+|..++.+++ +|+++ ..+++|++|++++|+++ .++|+.|+++.|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999985 35677888777 55554 34556677777777665 24566666666665
Q ss_pred e
Q 046299 132 S 132 (138)
Q Consensus 132 ~ 132 (138)
.
T Consensus 185 ~ 185 (549)
T 2z81_A 185 A 185 (549)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=121.12 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=103.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-c-ccc---ccccCCCCCCEEEccc-CccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-K-LAG---DIITNLSRLAHMDLSF-DLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~-l~~---~~~~~l~~L~~L~ls~-N~l~~~~~~~~~~~~~L~~ 74 (138)
+++|++++|++++..+..|+.+ ++|++|++++ + +++ ..|.++++|++|++++ |.++...+..|..+.+|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l---~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNL---PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTC---TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred ccEEEEeCCcceEECHHHccCC---CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 5789999999998777789999 9999999999 7 877 5799999999999999 9998777778888899999
Q ss_pred EEecCCcCCCCCCCCCCCCCC-----eEEec-------------cCCCcee-EEEeeCCccc--------CCCCcEEEcc
Q 046299 75 IILGSCKMGPGFPNPIPEMPH-----DVLIS-------------SFQQYVF-RVDIYFQQYV--------SQSWTIIDLG 127 (138)
Q Consensus 75 L~l~~n~l~~~~p~~~~~l~~-----~L~ls-------------~~l~~L~-~L~ls~N~l~--------~~~L~~L~Ls 127 (138)
|++++|++++ +|. +..+.+ +++++ ..+++|+ +|++++|+++ .++|+.|+++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 9999999984 776 555443 34443 3456777 8888888777 2457778888
Q ss_pred CCe-eee
Q 046299 128 INK-FSG 133 (138)
Q Consensus 128 ~N~-l~g 133 (138)
+|+ +++
T Consensus 188 ~n~~l~~ 194 (239)
T 2xwt_C 188 KNKYLTV 194 (239)
T ss_dssp TCTTCCE
T ss_pred CCCCccc
Confidence 884 765
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-19 Score=129.23 Aligned_cols=128 Identities=13% Similarity=0.027 Sum_probs=82.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCccceeCCC----CCcc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFNFSS----GWIP 68 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~~~~----~~~~ 68 (138)
|++|++++|++++..|..++.+ ++|++|++++ ++.+ ..+..+++|++|++++|+++. ++. .+..
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVRAF---PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCCCC---TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred CCEEEeeCCCcchhhHHHhccC---CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 5678888888877777777777 8888888888 7654 223677788888888887752 121 1234
Q ss_pred ccCcceEEecCCcCCCCCCCCCCCCC---C--eEEec---------cCCCceeEEEeeCCccc-------CCCCcEEEcc
Q 046299 69 PFQLNTIILGSCKMGPGFPNPIPEMP---H--DVLIS---------SFQQYVFRVDIYFQQYV-------SQSWTIIDLG 127 (138)
Q Consensus 69 ~~~L~~L~l~~n~l~~~~p~~~~~l~---~--~L~ls---------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls 127 (138)
+.+|++|++++|++++..|+.+..+. + +|+++ ...++|++|++++|+|+ .++|+.|+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 56788888888888876677776653 3 44444 11234555555555555 2445555555
Q ss_pred CCeee
Q 046299 128 INKFS 132 (138)
Q Consensus 128 ~N~l~ 132 (138)
+|+|+
T Consensus 303 ~N~l~ 307 (310)
T 4glp_A 303 GNPFL 307 (310)
T ss_dssp STTTS
T ss_pred CCCCC
Confidence 55554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-18 Score=134.16 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=97.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|+++ ++|++|++++ ++++ ..|+++++|++|++++|.+++..|..+..+.+|++|+
T Consensus 51 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 51 LTSLDVGFNTISKLEPELCQKL---PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp CSEEECCSSCCCCCCTTHHHHC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcEEECCCCccCccCHHHHhcc---cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 6789999999999888889999 9999999999 8888 4689999999999999999877777888888999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec--------------cCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS--------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls--------------~~l~~L~~L~ls~N~l~ 117 (138)
+++|.+++..|..++.+++ +|+++ ..+++|++|++++|+++
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 9999998888888888887 88887 13467888888888765
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-19 Score=115.45 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=98.3
Q ss_pred CcEEEccCcccc-CcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLN-GTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~-~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|++++|.++ +.+|..++.+ ++|++|++++ .+++ ..++.+++|++|++++|.+++.+|..+..+.+|++|++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEF---EELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTC---TTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CeEEEccCCcCChhHHHHHHhhc---CCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 578999999998 6788888999 9999999999 9999 88999999999999999998767776666889999999
Q ss_pred cCCcCCCC-CCCCCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEccC
Q 046299 78 GSCKMGPG-FPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDLGI 128 (138)
Q Consensus 78 ~~n~l~~~-~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~Ls~ 128 (138)
++|++++. .|..+..+++ |++|++++|+++ .++|+.||+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~----------L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLEN----------LKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTT----------CCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCC----------CCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999852 3366766554 999999999987 36788888764
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=118.40 Aligned_cols=104 Identities=12% Similarity=0.152 Sum_probs=96.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|+|++..+..|..+ ++|++|++++ ++++ ..|.++++|++|++++|++++..|..+..+.+|++|+
T Consensus 59 L~~L~L~~N~i~~i~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 59 LRKINFSNNKITDIEEGAFEGA---SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCEEECCCCcCCEECHHHhCCC---CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 6899999999999888899999 9999999999 9998 5699999999999999999988899999999999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+++|++++..|..+..+++ |++|++++|.++
T Consensus 136 L~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~l~ 166 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHS----------LSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTT----------CCEEECCSCCEE
T ss_pred CCCCcCCEECHHHhcCCCC----------CCEEEecCcCCc
Confidence 9999999877888887766 999999999987
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-18 Score=123.03 Aligned_cols=124 Identities=13% Similarity=0.177 Sum_probs=106.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|++++ +| .++.+ ++|++|++++ ++++ ..+..+++|++|++++|.+++..+ +..+.+|++|+++
T Consensus 87 L~~L~L~~n~l~~-~~-~~~~l---~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 87 ITELELSGNPLKN-VS-AIAGL---QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG 159 (308)
T ss_dssp CCEEECCSCCCSC-CG-GGTTC---TTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CCEEEccCCcCCC-ch-hhcCC---CCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc
Confidence 6899999999976 33 68888 9999999999 9999 779999999999999999975443 6777899999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|++++ ++. +..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++
T Consensus 160 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 160 NAQVSD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred CCcCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 999984 554 777777 88887 56788999999999998 4789999999999987
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-18 Score=122.62 Aligned_cols=124 Identities=13% Similarity=0.181 Sum_probs=76.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|++++..+ +..+ ++|++|++++ ++++ ..+..+++|++|++++|+++.. +.+..+.+|++|+++
T Consensus 70 L~~L~L~~n~l~~~~~--l~~l---~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 70 VTKLFLNGNKLTDIKP--LANL---KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 142 (291)
T ss_dssp CCEEECCSSCCCCCGG--GTTC---TTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECC
T ss_pred CCEEEccCCccCCCcc--cccC---CCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEcc
Confidence 4566666666655332 5566 6666666666 6666 5566666666666666666532 244555566667777
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|++++ + ..+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|+++.
T Consensus 143 ~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 143 NNKITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred CCcCCc-c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence 666663 2 34555555 66665 44566777777777766 3567777777777654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-18 Score=115.77 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=94.8
Q ss_pred CcEEEccCccccCcCCc-cccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTK-ASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~-~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
+++|++++|+|++..+. .|+.+ ++|++|++++ ++++ ..|.++++|++|++++|++++..+..+..+.+|++|
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRL---PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCEEECCCCcCCccCCccccccC---CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 57999999999886664 48899 9999999999 9998 689999999999999999998888889899999999
Q ss_pred EecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 76 ILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
++++|++++..|..+..+++ |++|++++|.++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~l~ 139 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNS----------LTSLNLASNPFN 139 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTT----------CCEEECTTCCBC
T ss_pred ECCCCcCCeeCHHHhhcCCC----------CCEEEeCCCCcc
Confidence 99999999888988887766 999999999987
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=113.79 Aligned_cols=116 Identities=16% Similarity=0.085 Sum_probs=91.1
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+.+++++|.++. +|..+ . +++++|++++ +++. ..|.++++|++|++++|.+++..+..|..+.+|++|+++
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--P---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--C---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCc-CCCCC--C---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 467888888864 66543 2 5788888888 8887 678888888888888888887777778888888888888
Q ss_pred CCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
+|++++..|..+..+++ |++|++++|+|+ .++|+.|++++|++..
T Consensus 87 ~N~l~~i~~~~f~~l~~----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKS----------LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTT----------CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCEeCHHHhCCCCC----------CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88888666666776655 888888888887 3578888888888764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=131.10 Aligned_cols=130 Identities=14% Similarity=0.116 Sum_probs=97.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccce-eCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTF-NFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~~~~L~~L 75 (138)
|++|++++|++++..|++|+.+ ++|++|++++ ++++ ..|+++++|++|++++|.+++ ..|..+..+.+|++|
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSL---GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTC---TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred ccEEECCCCCcCccChhhcccc---ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 5788899998888777888888 8888888888 8888 448888888888888888865 356677777788888
Q ss_pred EecCCcCCCCCC-CCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCee
Q 046299 76 ILGSCKMGPGFP-NPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKF 131 (138)
Q Consensus 76 ~l~~n~l~~~~p-~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l 131 (138)
++++|++.+.+| ..+..+++ +|+++ +.+++|++|++++|.+. .++|++|++++|++
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence 888887444555 46777776 77766 34566777777777665 35677777777776
Q ss_pred ee
Q 046299 132 SG 133 (138)
Q Consensus 132 ~g 133 (138)
++
T Consensus 209 ~~ 210 (549)
T 2z81_A 209 AR 210 (549)
T ss_dssp TT
T ss_pred cc
Confidence 65
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=112.41 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=94.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.+++++|+++. +|..+ . ++|++|++++ ++++ ..|..+++|++|++++|.+++..+..+..+.+|++|++
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--P---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--C---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCCcc-CCCCC--C---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 568888998865 55433 4 6789999999 8888 45788999999999999998666666778889999999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecCC
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~iP 136 (138)
++|++++..+..+..+++ |++|++++|+++ .++|++|++++|++++..|
T Consensus 84 ~~N~l~~~~~~~~~~l~~----------L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQ----------LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTT----------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcc----------cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998655555666555 999999999888 3678899999999887543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-18 Score=124.16 Aligned_cols=94 Identities=10% Similarity=0.105 Sum_probs=71.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|.+++..|..|+.+ ++|++|++++ ++++ ..|+++++|++|++++|.++ .+|..+. .+|++|+
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGL---QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CeEEECCCCcCCccCHhHhhCC---CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 5788888888887777788888 8888888888 8887 67888888888888888886 5555444 4788888
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
+++|++++..+..+..+++ +++++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCCccCccCHhHhCCCccCCEEECC
Confidence 8888887444445666666 66665
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=132.49 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=84.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|..+ ++|++|++++ ++++ ..|+++++|++|++++|+++ .+|.. .+.+|++|+
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSL---SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTC---TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccEEECCCCcccccChhhcccc---ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 5788888888887777788888 8888888888 8887 57888888888888888887 45554 667888888
Q ss_pred ecCCcCCC-CCCCCCCCCCCeEEeccCCCceeEEEeeCCccc------CCCC--cEEEccCCee
Q 046299 77 LGSCKMGP-GFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV------SQSW--TIIDLGINKF 131 (138)
Q Consensus 77 l~~n~l~~-~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------~~~L--~~L~Ls~N~l 131 (138)
+++|++++ .+|..++.+++ |++|++++|+++ .+++ +.|++++|.+
T Consensus 97 L~~N~l~~~~~p~~~~~l~~----------L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQ----------LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTT----------CCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccccccchhhhccCCc----------ceEEEecCcccchhhccccccceeeEEEeecccc
Confidence 88888876 46777877766 555555555554 2344 5555555554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-18 Score=118.85 Aligned_cols=131 Identities=11% Similarity=0.090 Sum_probs=99.6
Q ss_pred CcEEEccCcc-ccCcCCccccCCCCCCCccEEEccc--cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcc-
Q 046299 1 MKDLFVGNNR-LNGTLTKASDSFPSFSFWTSLIILR--KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLN- 73 (138)
Q Consensus 1 L~~L~Ls~N~-l~~~~p~~~~~l~~~~~L~~L~Ls~--~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~- 73 (138)
|++|++++|+ +++..+..|..+ ++|++|++++ ++++ ..|.++++|++|++++|.+++ +|. +..+.+|+
T Consensus 57 L~~L~l~~n~~l~~i~~~~f~~l---~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 57 ISRIYVSIDVTLQQLESHSFYNL---SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI 131 (239)
T ss_dssp CCEEEEECCSSCCEECTTTEESC---TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred CcEEeCCCCCCcceeCHhHcCCC---cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence 5788888886 777666678888 8888888874 6666 567888888888888888865 554 66666777
Q ss_pred --eEEecCC-cCCCCCCCCCCCCCC---eEEec-----------cCCCceeEEEeeCCc-cc---------C-CCCcEEE
Q 046299 74 --TIILGSC-KMGPGFPNPIPEMPH---DVLIS-----------SFQQYVFRVDIYFQQ-YV---------S-QSWTIID 125 (138)
Q Consensus 74 --~L~l~~n-~l~~~~p~~~~~l~~---~L~ls-----------~~l~~L~~L~ls~N~-l~---------~-~~L~~L~ 125 (138)
+|++++| ++++..+..+..+++ +++++ ...++|+.|++++|+ ++ . ++|+.|+
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 8888888 887555555776666 36665 122689999999995 87 3 6899999
Q ss_pred ccCCeeeecCCC
Q 046299 126 LGINKFSGQYPR 137 (138)
Q Consensus 126 Ls~N~l~g~iP~ 137 (138)
+++|++++ +|.
T Consensus 212 l~~N~l~~-l~~ 222 (239)
T 2xwt_C 212 VSQTSVTA-LPS 222 (239)
T ss_dssp CTTCCCCC-CCC
T ss_pred CCCCcccc-CCh
Confidence 99999987 764
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=125.35 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=111.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++.|++++|.++...+..+..+ ++|++|++++ .+++ ..|..+++|++|++++|.+++..|..+..+.+|++|+
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSF---RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHC---CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ceEEEecCCchhhCChhHhccc---ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 5789999999987655567889 9999999999 9988 5899999999999999999988888888999999999
Q ss_pred ecCCcCCCCCCCC-CCCCCC--eEEec------------cCCCceeEEEeeCCccc------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNP-IPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~-~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~------~~~L~~L~Ls~N~l~g 133 (138)
+++|+++ .+|.. +..+++ +|+++ ..+++|++|++++|+++ .++++.+++++|.+++
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence 9999998 56655 577877 88887 45678899999999887 5788899999998876
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=142.52 Aligned_cols=128 Identities=10% Similarity=0.183 Sum_probs=76.2
Q ss_pred CcEEEccCccccC-----------------cCCcccc--CCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCc
Q 046299 1 MKDLFVGNNRLNG-----------------TLTKASD--SFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDL 57 (138)
Q Consensus 1 L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~ 57 (138)
|++|+|++|+|++ .+|+.++ ++ ++|++|++++ ++.+ ..|+++++|++|++++|+
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L---~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL---KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC---TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccC---CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 4667777777766 2666665 66 7777777776 6655 556667777777777776
Q ss_pred -cce-eCCCCCcccc-------CcceEEecCCcCCCCCCC--CCCCCCC--eEEec----------cCCCceeEEEeeCC
Q 046299 58 -RTF-NFSSGWIPPF-------QLNTIILGSCKMGPGFPN--PIPEMPH--DVLIS----------SFQQYVFRVDIYFQ 114 (138)
Q Consensus 58 -l~~-~~~~~~~~~~-------~L~~L~l~~n~l~~~~p~--~~~~l~~--~L~ls----------~~l~~L~~L~ls~N 114 (138)
+++ .+|..+..+. +|++|++++|+++ .+|. .++.+++ .|+++ +.+++|+.|++++|
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC
Confidence 665 5555444333 5666666666665 5665 5555555 55555 33445555555555
Q ss_pred ccc--------CCC-CcEEEccCCeee
Q 046299 115 QYV--------SQS-WTIIDLGINKFS 132 (138)
Q Consensus 115 ~l~--------~~~-L~~L~Ls~N~l~ 132 (138)
+++ .++ |+.|++++|+++
T Consensus 606 ~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 606 QIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred ccccchHHHhhccccCCEEECcCCCCC
Confidence 554 133 555555555554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-18 Score=131.51 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=93.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
++.++++.|.+.+..|..+..+ +.+++|++++ ++.. ..|..+++|++|++++|++++..|..|..+.+|++|
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~---~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGL---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTC---TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccccc---hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 3567777777777777777777 7888888877 5433 567788888888888888877777777777788888
Q ss_pred EecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 76 ILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
++++|+|++..|..+..+++ |++|++++|+|+ +++|++|++++|+++.
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~----------L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNS----------LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTT----------CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCCCChhHHhCCCC----------CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 88888887666666666554 999999999998 3679999999999874
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-17 Score=115.10 Aligned_cols=118 Identities=12% Similarity=0.068 Sum_probs=100.2
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.++.++++++. +|..+ . ++|++|++++ ++++ ..|..+++|++|++++|+++...+..+..+.+|++|++
T Consensus 22 ~~v~c~~~~l~~-ip~~~--~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 22 TTVDCRSKRHAS-VPAGI--P---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TEEECTTSCCSS-CCSCC--C---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEeEccCCCcCc-cCCCC--C---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 468899999964 67644 3 7899999999 9998 67999999999999999997666666788899999999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCC
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP 136 (138)
++|++++..+..+..+++ |++|++++|+|+ .++|+.|++++|+|++ +|
T Consensus 96 s~N~l~~l~~~~~~~l~~----------L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~ 151 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVH----------LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IP 151 (229)
T ss_dssp CSSCCCCCCTTTTTTCTT----------CCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CC
T ss_pred CCCcCCccChhHhCcchh----------hCeEeccCCcccccCcccccCCCCCEEECCCCcCCc-cC
Confidence 999999655555676655 999999999998 4789999999999997 55
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=123.04 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=72.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~ 74 (138)
|++|++++|++++..+..+..+ ++|++|++++ .++. ..|..+ +|++|++++|.+++ +|..+. .+|++
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~ 197 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGL---RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNE 197 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSC---SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSC
T ss_pred CCEEECCCCccCccCHhHhCCC---ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCE
Confidence 4556666666655444556666 6677777766 6642 344444 45555555554432 333222 35666
Q ss_pred EEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 75 IILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 75 L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
|++++|++++..|..+..+++ +|+++ ..+++|++|++++|+++ .++|++|++++|+++
T Consensus 198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence 666666666544455555555 55555 34556777777777766 356677777777776
Q ss_pred e
Q 046299 133 G 133 (138)
Q Consensus 133 g 133 (138)
+
T Consensus 278 ~ 278 (332)
T 2ft3_A 278 K 278 (332)
T ss_dssp B
T ss_pred c
Confidence 5
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=116.27 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=94.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..|..|..+ ++|++|+|++ ++++ ..|.++++|++|++++|++++..|..+..+.+|++|+
T Consensus 58 L~~L~Ls~N~i~~~~~~~~~~l---~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 58 LRRIDLSNNQISELAPDAFQGL---RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCCcCHHHhhCC---cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 6899999999999889999999 9999999999 9998 5689999999999999999988888899999999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+++|++++..+..+..+++ |++|++++|.+.
T Consensus 135 L~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~~~ 165 (220)
T 2v9t_B 135 LYDNKLQTIAKGTFSPLRA----------IQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCSCCCTTTTTTCTT----------CCEEECCSSCEE
T ss_pred CCCCcCCEECHHHHhCCCC----------CCEEEeCCCCcC
Confidence 9999999666666776655 999999999987
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.3e-18 Score=125.17 Aligned_cols=122 Identities=15% Similarity=0.083 Sum_probs=103.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|+|++|+|++..|..|..+ ++|++|+|++ ++++ ..|.++++|++|++++|+++...+..+..+.+|++|+
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPV---PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cCEEECCCCcCCccChhhccCC---CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 6899999999999888889999 9999999999 9998 5799999999999999999988888999999999999
Q ss_pred ecCCcCCCCCCCCCC-CCCCeEEeccCCCceeEEEeeCCccc---------CCC--CcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIP-EMPHDVLISSFQQYVFRVDIYFQQYV---------SQS--WTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~-~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~--L~~L~Ls~N~l~g 133 (138)
+++|+++ .+|..+. .+. .+++|++|++++|+|+ .+. ++.|++++|++..
T Consensus 143 L~~N~l~-~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 143 LSQNQIS-RFPVELIKDGN-------KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCSSCCC-SCCGGGTC-----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCcCC-eeCHHHhcCcc-------cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 9999998 5666532 111 2455999999999998 122 4789999999864
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=130.62 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=74.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..|+.+ ++|++|++++ ++++ ..|.++++|++|++++|+++ .+|.. .+.+|++|+
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFL---SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTC---TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred cCEEECCCCCccccChhhhccC---CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 3566666666666555566666 6666666666 6665 44666666666666666665 34433 455666666
Q ss_pred ecCCcCCC-CCCCCCCCCCCeEEeccCCCceeEEEeeCCccc------CCCC--cEEEccCCee--eecCC
Q 046299 77 LGSCKMGP-GFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV------SQSW--TIIDLGINKF--SGQYP 136 (138)
Q Consensus 77 l~~n~l~~-~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------~~~L--~~L~Ls~N~l--~g~iP 136 (138)
+++|++++ .+|..+++++ +|++|++++|+++ .+++ ++|++++|.+ ++..|
T Consensus 128 Ls~N~l~~l~~p~~~~~l~----------~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLT----------KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCT----------TCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred CCCCCccccCchHhhcccC----------cccEEecCCCccccCchhhhhhceeeEEEeecccccccccCc
Confidence 66666653 2345555544 4888888888776 3455 7888888877 55444
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=117.53 Aligned_cols=123 Identities=12% Similarity=0.142 Sum_probs=102.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.++. +| .+..+ ++|++|++++ ++++ ..+..+++|++|++++|++++ +|... . .+|++|+++
T Consensus 43 L~~L~l~~n~i~~-l~-~l~~l---~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~ 114 (263)
T 1xeu_A 43 VQNFNGDNSNIQS-LA-GMQFF---TNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD 114 (263)
T ss_dssp CSEEECTTSCCCC-CT-TGGGC---TTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred CcEEECcCCCccc-ch-HHhhC---CCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence 6789999999975 55 68888 9999999999 9999 559999999999999999975 34322 2 689999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|++++ +| .+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++
T Consensus 115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 115 NNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp SSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEEC
T ss_pred CCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccC
Confidence 999984 44 5777777 88887 56788999999999988 5788999999999886
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=130.69 Aligned_cols=130 Identities=11% Similarity=0.057 Sum_probs=112.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
++.+++++|.+....+..+..+ ++|++|++++ .+++ ..|+.+++|++|++++|.+++..|..+..+.+|++|+
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSF---RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHC---CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ceEEEeeCCCCCCcCHHHHccC---CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4689999999987666678889 9999999999 9998 5899999999999999999988888888999999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc------CCCCcEEEccCCeeee
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~------~~~L~~L~Ls~N~l~g 133 (138)
+++|.+++..+..+..+++ +|+++ +.+++|++|++++|+++ .++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence 9999999444444688887 88887 45678889999998887 5788889999888876
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-17 Score=120.20 Aligned_cols=133 Identities=11% Similarity=-0.007 Sum_probs=100.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCE-EEcccCccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAH-MDLSFDLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~-L~ls~N~l~~~~~~~~~~~~~L~~ 74 (138)
+++|+|++|+|+.+.+.+|.++ ++|++|+|++ ++.+ ..|.+++++++ +.+++|+++...|..|..+.+|++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l---~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGF---GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTC---TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCEEEccCCcCCCcCHHHHcCC---CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 5789999999987666789999 9999999999 8765 67889998875 666789998888888888999999
Q ss_pred EEecCCcCCCCCCCCCCCCCC--eEEec-------------cC-CCceeEEEeeCCccc---------------------
Q 046299 75 IILGSCKMGPGFPNPIPEMPH--DVLIS-------------SF-QQYVFRVDIYFQQYV--------------------- 117 (138)
Q Consensus 75 L~l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~-l~~L~~L~ls~N~l~--------------------- 117 (138)
|++++|+++...+..+..... .+++. .. ...++.|++++|+|+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC
Confidence 999999998544444444333 56554 11 134666666666665
Q ss_pred ------------CCCCcEEEccCCeeeecCCC
Q 046299 118 ------------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 118 ------------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
.++|++||+++|+|+. +|.
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~ 219 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHS-LPS 219 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCC-CCS
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCc-cCh
Confidence 2467788888888876 664
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-18 Score=137.91 Aligned_cols=130 Identities=11% Similarity=0.033 Sum_probs=103.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-c-ccc----c-------cccCCCCCCEEEcccCccceeCCC--C
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-K-LAG----D-------IITNLSRLAHMDLSFDLRTFNFSS--G 65 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~-l~~----~-------~~~~l~~L~~L~ls~N~l~~~~~~--~ 65 (138)
|++|+|++|.+.+.+|..++++ ++|++|++++ + +++ . .+..+++|++|++++|.++ .+|. .
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L---~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDL---PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGC---SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCEEECcCCCCCccChHHHhCC---CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 6789999999999999999999 9999999998 7 764 2 3345558999999999887 7887 7
Q ss_pred CccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCc-eeEEEeeCCccc--C--------CCC
Q 046299 66 WIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQY-VFRVDIYFQQYV--S--------QSW 121 (138)
Q Consensus 66 ~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~-L~~L~ls~N~l~--~--------~~L 121 (138)
+..+.+|++|++++|+++ .+| .++.+++ .|+++ ..+++ |++|++++|+++ | .+|
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 888888888999888888 788 7777777 78877 33456 888888888887 1 237
Q ss_pred cEEEccCCeeeecCC
Q 046299 122 TIIDLGINKFSGQYP 136 (138)
Q Consensus 122 ~~L~Ls~N~l~g~iP 136 (138)
+.|++++|+++|.+|
T Consensus 647 ~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGR 661 (876)
T ss_dssp EEEECCSSCTTTTSS
T ss_pred CEEECcCCcCCCccc
Confidence 788888888877555
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-17 Score=128.50 Aligned_cols=124 Identities=13% Similarity=0.185 Sum_probs=92.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|+.|+|++|++++..| +..+ ++|+.|+|++ .+++ ..+..+++|++|++++|.++.. +.+..+.+|+.|+++
T Consensus 67 L~~L~Ls~N~l~~~~~--l~~l---~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 67 VTKLFLNGNKLTDIKP--LTNL---KNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLG 139 (605)
T ss_dssp CCEEECTTSCCCCCGG--GGGC---TTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECC
T ss_pred CCEEEeeCCCCCCChh--hccC---CCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECC
Confidence 5677888888776443 6777 7888888888 7777 7777788888888888877642 346666778888888
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|.+++ + ..+..+++ .|+++ ..+++|+.|+|++|+|+ .++|+.|+|++|++++
T Consensus 140 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 140 NNKITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred CCccCC-c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcC
Confidence 888874 3 45666666 77777 45678888888888887 4788888898888876
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-17 Score=124.32 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=74.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.+++..| +..+ ++|++|++++ .+++ ..+..+++|++|++++|++++..+ +..+.+|++|+++
T Consensus 245 L~~L~l~~n~l~~~~~--~~~l---~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP--LSGL---TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTC---TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred CCEEECCCCccccchh--hhcC---CCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 3455555555544322 4555 5566666666 5555 445566666666666666654332 4455566666666
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+|++++..| +..+++ +++++ ..+++|++|++++|+++ .++|+.|++++|++++
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 666664433 444444 56665 45667777777777776 3677778888887776
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=110.97 Aligned_cols=103 Identities=11% Similarity=0.152 Sum_probs=91.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|+|+ .+|..|..+ ++|++|++++ ++++ ..|.++++|++|++++|++++..+..|..+.+|++|+
T Consensus 33 l~~L~L~~n~i~-~ip~~~~~l---~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 33 VTELYLDGNQFT-LVPKELSNY---KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CCEEECCSSCCC-SCCGGGGGC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCc-hhHHHhhcc---cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 578999999997 578899999 9999999999 9998 6799999999999999999988888899999999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+++|+++...+..+..+++ |++|++++|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSA----------LSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTT----------CCEEECCSSCEE
T ss_pred CCCCCCCeeChhhhhcCcc----------ccEEEeCCCCee
Confidence 9999999544445766655 999999999987
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.6e-17 Score=108.20 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=90.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|++++..+..++.+ ++|++|++++ ++++ ..|..+++|++|++++|.+++..+..+..+.+|++|+
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKL---TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCcccEeCHHHhcCc---ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 5799999999998777778999 9999999999 9998 5589999999999999999877776778888999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+++|++++..+..+..+++ |++|++++|.++
T Consensus 107 l~~N~l~~~~~~~~~~l~~----------L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTS----------LQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTT----------CCEEECCSSCBC
T ss_pred CcCCcceEeCHHHhcCCcc----------cCEEEecCCCee
Confidence 9999998544444565554 999999999987
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=112.29 Aligned_cols=117 Identities=10% Similarity=0.045 Sum_probs=97.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|+++. +|. +..+. ++|++|++++ .+++ ..|+.+++|++|++++|.+++..+..+..+.+|++|+++
T Consensus 21 L~~L~l~~n~l~~-i~~-~~~~~--~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 21 DRELDLRGYKIPV-IEN-LGATL--DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CEEEECTTSCCCS-CCC-GGGGT--TCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred ceEEEeeCCCCch-hHH-hhhcC--CCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 5789999999985 554 55540 4999999999 9999 899999999999999999986544444778899999999
Q ss_pred CCcCCCCCCC--CCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEccCCeee
Q 046299 79 SCKMGPGFPN--PIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDLGINKFS 132 (138)
Q Consensus 79 ~n~l~~~~p~--~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~Ls~N~l~ 132 (138)
+|+++ .+|. .+..+++ |++|++++|.++ .++|+.||+++|.+.
T Consensus 97 ~N~i~-~~~~~~~l~~l~~----------L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLASLKS----------LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCCC-CGGGGGGGGGCTT----------CCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcCC-cchhhHhhhcCCC----------CCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99996 6776 5665544 999999999987 478999999999764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-18 Score=138.03 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=65.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|+.|+|++|.+. .+|..++.+ ++|++|+|++ .++. ..|+++++|++|+|++|.|+ .+|..+..+.+|++|+|
T Consensus 226 L~~L~Ls~n~l~-~l~~~~~~l---~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 226 WHALDLSNLQIF-NISANIFKY---DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCEEECTTSCCS-CCCGGGGGC---CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CcEEECCCCCCC-CCChhhcCC---CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 456666666665 355555566 6666666666 6665 55666666666666666665 55666666666666666
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
++|.|+ .+|..|+.+++ |++|+|++|+|+
T Consensus 301 ~~N~l~-~lp~~~~~l~~----------L~~L~L~~N~l~ 329 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCN----------LQFLGVEGNPLE 329 (727)
T ss_dssp CSSCCC-CCCSSTTSCTT----------CCCEECTTSCCC
T ss_pred CCCCCC-ccChhhhcCCC----------ccEEeCCCCccC
Confidence 666665 56666655544 777777777766
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-17 Score=116.86 Aligned_cols=126 Identities=15% Similarity=0.152 Sum_probs=107.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.++. +| .+..+ ++|++|++++ ++++ ..+..+++|++|++++|.++. ++ .+..+.+|++|+++
T Consensus 48 L~~L~l~~~~i~~-~~-~~~~l---~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 48 IDQIIANNSDIKS-VQ-GIQYL---PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp CCEEECTTSCCCC-CT-TGGGC---TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred ccEEEccCCCccc-Ch-hHhcC---CCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 6889999999976 44 48888 9999999999 9999 669999999999999999975 33 47788899999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|++++ + +.+..+++ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++ +|
T Consensus 121 ~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~-l~ 194 (291)
T 1h6t_A 121 HNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR 194 (291)
T ss_dssp TSCCCC-C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG
T ss_pred CCcCCC-C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC-Ch
Confidence 999984 4 45677777 88888 56789999999999988 4789999999999987 44
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=129.68 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=95.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.+++..|..+..+ ++|+.|++++ ++++ ..|.++++|++|++++|.+++..|..+..+.+|++|+
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETL---KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSC---CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred ccEEECCCCcccccChhhhhcC---CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 5789999999998888889999 9999999999 9888 6789999999999999999888888888889999999
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec-------cCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS-------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls-------~~l~~L~~L~ls~N~l~ 117 (138)
+++|++++..+..+..+++ +|+++ ..+++|+.|++++|+++
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV 394 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcc
Confidence 9999998666667888877 88887 33456666666666654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=121.11 Aligned_cols=105 Identities=15% Similarity=0.023 Sum_probs=58.3
Q ss_pred CCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCc-cccCcceEEecCCcCCCCCCCCCCCCCC--eEE
Q 046299 26 SFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWI-PPFQLNTIILGSCKMGPGFPNPIPEMPH--DVL 98 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ 98 (138)
++|++|++++ ++++ ..|+.+++|++|++++|.+++..+..+. .+.+|++|++++|++++ +|... .+++ +|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCC-CCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccccc-ccccCCEEE
Confidence 4455555555 5554 3444455555555555555444333332 23445555555555542 22221 1222 344
Q ss_pred ec-----------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 99 IS-----------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 99 ls-----------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
++ ..+++|++|++++|+++ .++|+.|++++|+++
T Consensus 198 Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 43 23456889999999888 367889999999887
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=134.02 Aligned_cols=120 Identities=9% Similarity=0.082 Sum_probs=91.6
Q ss_pred cEEEccCccccC---------cCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccc
Q 046299 2 KDLFVGNNRLNG---------TLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPP 69 (138)
Q Consensus 2 ~~L~Ls~N~l~~---------~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~ 69 (138)
+.++|+.|.|.+ ..|+.+..+ +.|+.|+|++ .+.. ..+..+++|++|+|++|.|+ .+|..+..+
T Consensus 194 ~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l---~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 194 QHKKLSQYSIDEDDDIENRMVMPKDSKYDD---QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ----------------------------CC---CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred hcCccCcccccCccccccceecChhhhccC---CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 345555555543 347778888 9999999999 9888 56678999999999999998 888889999
Q ss_pred cCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCC
Q 046299 70 FQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 70 ~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP 136 (138)
.+|++|+|++|.|+ .+|..++.+++ |++|+|++|+|+ .++|+.|+|++|.|+|.+|
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~----------L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQ----------LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTT----------CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCC----------CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 99999999999998 88999887665 999999999998 4789999999999998665
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-16 Score=119.09 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=71.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-ccccccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAGDIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
|++|++++|.+++. | .++.+ ++|++|++++ ++++..++.+++|++|++++|.+++. + +..+.+|++|++++
T Consensus 44 L~~L~Ls~n~l~~~-~-~l~~l---~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 44 LTSLDCHNSSITDM-T-GIEKL---TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDT 115 (457)
T ss_dssp CCEEECCSSCCCCC-T-TGGGC---TTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCS
T ss_pred CCEEEccCCCcccC-h-hhccc---CCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCC
Confidence 46777777777663 4 56667 7777777777 77762266677777777777776543 2 55556666666666
Q ss_pred CcCCCCCCCCCCCCCC--eEEec---------cCCCceeEEEeeCCcc-c------CCCCcEEEccCCeeee
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS---------SFQQYVFRVDIYFQQY-V------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls---------~~l~~L~~L~ls~N~l-~------~~~L~~L~Ls~N~l~g 133 (138)
|++++ +| ++.+++ +++++ +.+++|++|++++|+. . .++|++|++++|++++
T Consensus 116 N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 116 NKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp SCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred CcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 66663 33 445554 55555 3344555555555521 1 2444444554444444
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=121.02 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec-
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS- 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls- 100 (138)
++|++|++++ .+++ ..+..+++|++|++++|.+++..+ +..+.+|++|++++|++++. +. +..+++ +|+++
T Consensus 243 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYF 318 (466)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCS
T ss_pred CCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcC
Confidence 4555555555 4444 335555555555555555543222 44445566666666665532 22 444444 55555
Q ss_pred ---------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeecCC
Q 046299 101 ---------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 101 ---------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~iP 136 (138)
..+++|++|++++|+++ .++|+.|++++|++++..|
T Consensus 319 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 319 NNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence 34566677777777666 4667777777777776443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-17 Score=126.58 Aligned_cols=124 Identities=15% Similarity=0.041 Sum_probs=71.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCc-cccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWI-PPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~-~~~~L~~L 75 (138)
|++|++++|.+++..+ ..+ ++|++|++++ .+++ ..|+.+++|++|++++|.+++..|..+. .+.+|++|
T Consensus 101 L~~L~L~~N~l~~~~~---~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 101 IETLHAANNNISRVSC---SRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp CCEEECCSSCCCCEEE---CCC---SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred cCEEECcCCcCCCCCc---ccc---CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 3455555555544322 234 5566666666 6665 3455666666666666666655555544 34566666
Q ss_pred EecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 76 ILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
++++|.+++. |... .++. +|+++ ..+++|+.|++++|+|+ .++|+.|++++|++.
T Consensus 175 ~Ls~N~l~~~-~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 175 NLQYNFIYDV-KGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTSCCCEE-ECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ecCCCccccc-cccc-cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 6666666533 2221 2333 44444 23456888888888877 357788888888876
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=115.61 Aligned_cols=123 Identities=12% Similarity=0.113 Sum_probs=66.7
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
++|++++|.+++. +. +..+ ++|+++++++ .+++ ..+..+++|++|++++|.++...+ +..+.+|++|++++
T Consensus 180 ~~L~l~~n~l~~~-~~-~~~l---~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 180 YSLSLNYNQIEDI-SP-LASL---TSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252 (347)
T ss_dssp SEEECTTSCCCCC-GG-GGGC---TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CEEEccCCccccc-cc-ccCC---CccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCC
Confidence 4455555555432 22 4444 4555555555 4444 335555566666666665543222 44455566666666
Q ss_pred CcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeee
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g 133 (138)
|.+++ + +.+..+++ +++++ ..+++|++|++++|+++ .++|++|++++|++++
T Consensus 253 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 253 NQISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp SCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CccCC-C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 66652 2 23444444 55555 34556666777776665 3567777777777666
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-16 Score=117.76 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=73.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-ccccccccCCCCCCEEEcccCccceeCCC---------------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAGDIITNLSRLAHMDLSFDLRTFNFSS--------------- 64 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~~~~~~l~~L~~L~ls~N~l~~~~~~--------------- 64 (138)
|++|++++|++++. | ++.+ ++|++|++++ ++++-.++.+++|++|++++|++++. +-
T Consensus 87 L~~L~Ls~N~l~~~-~--~~~l---~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 87 LTYLACDSNKLTNL-D--VTPL---TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNK 159 (457)
T ss_dssp CSEEECCSSCCSCC-C--CTTC---TTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCS
T ss_pred CCEEECcCCCCcee-e--cCCC---CcCCEEECCCCcCCeecCCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCC
Confidence 46777777777663 3 6666 7777777777 66662266666666666666666542 10
Q ss_pred -----CCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec---------cCCCceeEEEeeCCccc------CCCCc
Q 046299 65 -----GWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS---------SFQQYVFRVDIYFQQYV------SQSWT 122 (138)
Q Consensus 65 -----~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls---------~~l~~L~~L~ls~N~l~------~~~L~ 122 (138)
.+..+.+|++|++++|++++ +| +..++. .++++ +.+++|++|++++|+++ .++|+
T Consensus 160 ~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~ 236 (457)
T 3bz5_A 160 KITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLT 236 (457)
T ss_dssp CCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCS
T ss_pred cccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCccccCCCC
Confidence 13334455566666666653 33 444444 55554 34566667777777666 35667
Q ss_pred EEEccCCeeee
Q 046299 123 IIDLGINKFSG 133 (138)
Q Consensus 123 ~L~Ls~N~l~g 133 (138)
.|++++|++++
T Consensus 237 ~L~l~~N~l~~ 247 (457)
T 3bz5_A 237 YFDCSVNPLTE 247 (457)
T ss_dssp EEECCSSCCSC
T ss_pred EEEeeCCcCCC
Confidence 77777777766
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=117.03 Aligned_cols=74 Identities=16% Similarity=0.074 Sum_probs=36.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|++++ +| +++.+ ++|++|++++ ++++ +.. .++|++|++++|++++ +| .+..+.+|++|+++
T Consensus 133 L~~L~L~~n~l~~-lp-~~~~l---~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 133 LEYLGVSNNQLEK-LP-ELQNS---SFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTC---TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCEEECcCCCCCC-Cc-ccCCC---CCCCEEECCCCcCcccCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 4566666666655 45 36666 6666666666 5554 111 1244444444444433 22 23344444444444
Q ss_pred CCcCC
Q 046299 79 SCKMG 83 (138)
Q Consensus 79 ~n~l~ 83 (138)
+|+++
T Consensus 204 ~N~l~ 208 (454)
T 1jl5_A 204 NNSLK 208 (454)
T ss_dssp SSCCS
T ss_pred CCcCC
Confidence 44443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.7e-17 Score=118.58 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=93.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.+++..+ +..+ ++|++|++++ ++++ ..+..+++|++|++++|.++.. +.+..+.+|++|+++
T Consensus 201 L~~L~l~~n~l~~~~~--~~~~---~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP--VANM---TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVG 273 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGC---TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred cceeecccCCCCCCch--hhcC---CcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEcc
Confidence 5678888888876433 6777 8888888888 8887 5588888888888888887643 346666788888888
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFS 132 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~ 132 (138)
+|++++ + +.+..+++ +++++ ..+++|++|++++|+++ .++|+.|++++|+|+
T Consensus 274 ~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 274 SNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred CCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 888874 3 34556666 77777 56788999999999998 478999999999986
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=124.42 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=91.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|+.|++++|+|++ +|. ++.+ ++|+.|++++ +++. ..|+.+++|+.|++++|++++ +| .+..+.+|++|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l---~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQL---LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGG---TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred ceEEEecCCCCCC-CcC-cccc---ccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 5789999999987 666 8888 9999999999 8888 788999999999999999986 56 7888889999999
Q ss_pred cCCcCCCCC-CCCCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEc
Q 046299 78 GSCKMGPGF-PNPIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDL 126 (138)
Q Consensus 78 ~~n~l~~~~-p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~L 126 (138)
++|++++.. |..++.+++ |+.|++++|+++ .++|+.||+
T Consensus 516 s~N~l~~~~~p~~l~~l~~----------L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPR----------LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTT----------CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCC----------CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999998665 888877665 899999999887 356776654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-16 Score=103.56 Aligned_cols=100 Identities=10% Similarity=0.089 Sum_probs=85.5
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.+++++|.++. +|..+ . ++|++|++++ ++++ ..|.++++|++|++++|++++..+..|..+.+|++|++
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--P---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--C---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCc-cCccC--C---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 679999999976 67655 3 7899999999 9998 66999999999999999998777767788899999999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
++|+|++..|..+..+++ |++|++++|.++
T Consensus 86 ~~N~l~~~~~~~~~~l~~----------L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKS----------LTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTTTTTTCTT----------CCEEECCSSCBC
T ss_pred CCCccCEeCHHHhcCCCC----------CCEEEeCCCCCC
Confidence 999999655556777665 999999999886
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-17 Score=115.21 Aligned_cols=121 Identities=8% Similarity=0.049 Sum_probs=102.9
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCC
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSC 80 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n 80 (138)
.+++++|.+++. + .+..+ ++|++|++++ .++. +.+..+++|++|++++|++++..+ +..+.+|++|++++|
T Consensus 23 ~l~l~~~~i~~~-~-~~~~l---~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 23 KQNLGKQSVTDL-V-SQKEL---SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHTCSCTTSE-E-CHHHH---TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHhcCCCcccc-c-chhhc---CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 456788888764 3 57888 9999999999 9999 889999999999999999986544 778889999999999
Q ss_pred cCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 81 KMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 81 ~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
+++ .+|.... .+ +|+++ ..+++|++|++++|+++ .++|+.|++++|++++
T Consensus 96 ~l~-~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 96 RLK-NLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCS-CCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB
T ss_pred ccC-CcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc
Confidence 998 4665433 44 88888 56789999999999998 5889999999999987
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-15 Score=114.24 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=61.5
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec-
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS- 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls- 100 (138)
++|++|++++ ++++ +.|+++++|++|++++|++++ +|... .+|++|++++|++++ +| .++.+++ +++++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 4677777777 7776 567777777777777777764 44332 367788888887774 56 4666666 66665
Q ss_pred -------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 101 -------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 101 -------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
...++|++|++++|+++ .++|++|++++|++++
T Consensus 205 N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 205 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred CcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence 11234555555555544 2344444444444443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8e-16 Score=121.70 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=108.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|+.|++++|.+.. +| .+..+ ++|+.|+|++ ++++ ..+..+++|+.|++++|.+++ + +.+..+.+|++|+++
T Consensus 45 L~~L~l~~n~i~~-l~-~l~~l---~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 45 IDQIIANNSDIKS-VQ-GIQYL---PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLE 117 (605)
T ss_dssp CCCCBCTTCCCCC-CT-TGGGC---TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECT
T ss_pred CCEEECcCCCCCC-Ch-HHccC---CCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEec
Confidence 5789999999976 44 58889 9999999999 9999 669999999999999999974 3 367888899999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|++++ + +.+..+++ .|+++ ..+++|+.|+|++|+|+ +++|+.|+|++|+|++ +|
T Consensus 118 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-l~ 191 (605)
T 1m9s_A 118 HNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR 191 (605)
T ss_dssp TSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG
T ss_pred CCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC-Ch
Confidence 999984 4 34777777 88888 67789999999999998 5789999999999987 44
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-15 Score=117.30 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=40.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
++.|++++|.+++ +|..+ . ++|++|++++ +++. + ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 61 L~~L~Ls~n~L~~-lp~~l--~---~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNL--P---PQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp CSEEECCSSCCSC-CCSCC--C---TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred ccEEEeCCCCCCc-cCHhH--c---CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 3566666666655 44433 2 4566666666 5555 3 345555666666665554 443 322 55555555
Q ss_pred CCcCCCCCCC
Q 046299 79 SCKMGPGFPN 88 (138)
Q Consensus 79 ~n~l~~~~p~ 88 (138)
+|++++ +|.
T Consensus 129 ~N~l~~-lp~ 137 (571)
T 3cvr_A 129 NNQLTM-LPE 137 (571)
T ss_dssp SSCCSC-CCC
T ss_pred CCcCCC-CCC
Confidence 555553 444
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=100.77 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=83.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
+.+++++|+++ .+|..+ . ++|++|++++ ++++ ..|.++++|++|++++|++++..+..|..+.+|++|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~--~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI--P---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCS-SCCSCC--C---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCC-ccCCCc--C---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 47899999995 477655 3 7799999999 9998 67999999999999999998766666778889999999
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
++|+|++..+..+..+++ |++|++++|.+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~----------L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKS----------LTHIYLYNNPWD 118 (174)
T ss_dssp CSSCCCCCCTTTTTTCTT----------CSEEECCSSCBC
T ss_pred CCCccceeCHHHhccccC----------CCEEEeCCCCcc
Confidence 999999544445776655 999999999987
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=119.26 Aligned_cols=119 Identities=15% Similarity=0.085 Sum_probs=80.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|+|++ +|. +. .+|++|++++ ++++ +. .+++|++|++++|.+++ +|. .+.+|++|+++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~-----~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LP-----ASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVR 168 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CC-----TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CCEEEccCCCCCC-cch-hh-----cCCCEEECCCCcCCCCCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECC
Confidence 4667777777766 554 32 2677777777 7776 33 56777777777777764 444 34567777777
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----cCC----Cce-------eEEEeeCCccc--------CCCCcEEEccCCeeee
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----SFQ----QYV-------FRVDIYFQQYV--------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----~~l----~~L-------~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g 133 (138)
+|++++ +|. +. ++ +|+++ ..+ .+| +.|++++|+|+ .++|+.|+|++|++++
T Consensus 169 ~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 169 NNQLTF-LPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCCSC-CCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCCCC-cch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 777764 666 44 33 66666 111 146 99999999998 4689999999999988
Q ss_pred cCC
Q 046299 134 QYP 136 (138)
Q Consensus 134 ~iP 136 (138)
.+|
T Consensus 245 ~~p 247 (571)
T 3cvr_A 245 RIR 247 (571)
T ss_dssp HHH
T ss_pred cCH
Confidence 665
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=104.42 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=82.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|.++. ++.+..+ ++|++|++++ ++++ ..|+.+++|++|++++|.++...+..+..+.+|++|+
T Consensus 68 L~~L~l~~n~~~~--~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 68 IKDLTINNIHATN--YNPISGL---SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CSEEEEESCCCSC--CGGGTTC---TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCEEEccCCCCCc--chhhhcC---CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 5778888886643 3467777 8888888888 8775 6777888888888888888766666677777888888
Q ss_pred ecCCc-CCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc
Q 046299 77 LGSCK-MGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~-l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~ 117 (138)
+++|. ++ .+| .+..+++ +|+++ ..+++|++|++++|+|.
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence 88887 54 555 5666666 77777 56788999999999874
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-17 Score=119.33 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=48.9
Q ss_pred CcEEEccCccccCcCC----ccccCCCCCC-CccEEEccc-cccc---ccccCC-----CCCCEEEcccCccceeCCCCC
Q 046299 1 MKDLFVGNNRLNGTLT----KASDSFPSFS-FWTSLIILR-KLAG---DIITNL-----SRLAHMDLSFDLRTFNFSSGW 66 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p----~~~~~l~~~~-~L~~L~Ls~-~l~~---~~~~~l-----~~L~~L~ls~N~l~~~~~~~~ 66 (138)
|++|++++|.+++..+ ..+..+ + +|++|++++ .+++ ..+..+ ++|++|++++|.++...+..+
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANT---PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTC---CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhC---CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4677777777766554 556666 6 677777777 6665 333332 667777777777654433322
Q ss_pred cc----c-cCcceEEecCCcCCCC
Q 046299 67 IP----P-FQLNTIILGSCKMGPG 85 (138)
Q Consensus 67 ~~----~-~~L~~L~l~~n~l~~~ 85 (138)
.. . .+|++|++++|++++.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHHHhCCCCccEEECcCCcCCcH
Confidence 22 1 4566666666666543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-18 Score=119.26 Aligned_cols=119 Identities=9% Similarity=0.080 Sum_probs=96.4
Q ss_pred cEEEccCccccCcCCc------cccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcc
Q 046299 2 KDLFVGNNRLNGTLTK------ASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLN 73 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~------~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~ 73 (138)
+.++++.+.++|.+|. .++.+ ++|++|++++ .+++ +.+..+++|++|++++|.++ .+|..+..+.+|+
T Consensus 21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l---~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 21 VATEAEKVELHGMIPPIEKMDATLSTL---KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCTTCSEEECCBCCTTCCCCHHHHHHT---TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred cCcchheeEeccccCcHhhhhHHHhcC---CCCCEEECCCCCCccccccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 4567888888888776 88889 9999999999 9998 88889999999999999997 5676666667899
Q ss_pred eEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeeecCC
Q 046299 74 TIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 74 ~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|++++|++++ +| .+..+ ++|++|++++|+++ .++|++|++++|++++.+|
T Consensus 97 ~L~L~~N~l~~-l~-~~~~l----------~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEKL----------VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEEEEEEECCC-HH-HHHHH----------HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred EEECcCCcCCc-CC-ccccC----------CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 99999999984 55 44443 44888888888887 4678888888888876544
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=99.28 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=84.8
Q ss_pred CCccEEEccc-ccc--c--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEec
Q 046299 26 SFWTSLIILR-KLA--G--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLIS 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~--~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls 100 (138)
++++.|++++ .++ . ..+..+++|++|++++|.+++. ..+..+.+|++|++++|++++.+|..+..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~----- 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN----- 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT-----
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC-----
Confidence 7899999999 998 3 6778999999999999999765 67788889999999999999767776655554
Q ss_pred cCCCceeEEEeeCCccc----------CCCCcEEEccCCeeeec
Q 046299 101 SFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 101 ~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g~ 134 (138)
|++|++++|+++ .++|++|++++|++++.
T Consensus 90 -----L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 90 -----LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp -----CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred -----CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 999999999998 47899999999999983
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-16 Score=116.92 Aligned_cols=129 Identities=10% Similarity=0.030 Sum_probs=101.3
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-------ccccCCC-CCCEEEcccCccceeCCCCCccc----
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLS-RLAHMDLSFDLRTFNFSSGWIPP---- 69 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~-~L~~L~ls~N~l~~~~~~~~~~~---- 69 (138)
.+++++|.++|.+|..+... ++|++|++++ .+++ ..|..++ +|++|++++|.++...+..+...
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~---~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIP---HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSC---TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHHHHHHhCC---CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 57899999999888877777 7899999999 9987 4577888 99999999999986666555554
Q ss_pred -cCcceEEecCCcCCCCCCCC----CCCC-CC--eEEec----------------cC-CCceeEEEeeCCccc-------
Q 046299 70 -FQLNTIILGSCKMGPGFPNP----IPEM-PH--DVLIS----------------SF-QQYVFRVDIYFQQYV------- 117 (138)
Q Consensus 70 -~~L~~L~l~~n~l~~~~p~~----~~~l-~~--~L~ls----------------~~-l~~L~~L~ls~N~l~------- 117 (138)
.+|++|++++|++++..+.. +... ++ +|+++ .. .++|++|++++|+++
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 78999999999998665553 3333 44 78887 12 358888888888887
Q ss_pred -------CCCCcEEEccCCeeeec
Q 046299 118 -------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 118 -------~~~L~~L~Ls~N~l~g~ 134 (138)
+.+|++|+|++|++++.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHHhcCCccccEeeecCCCCchh
Confidence 14788888888888753
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=99.37 Aligned_cols=98 Identities=11% Similarity=0.054 Sum_probs=84.9
Q ss_pred CCccEEEccc-ccc--c--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEec
Q 046299 26 SFWTSLIILR-KLA--G--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLIS 100 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~--~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls 100 (138)
++|++|++++ .++ . ..+..+++|++|++++|.++.. ..+..+.+|++|++++|++++.+|..+..+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----- 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN----- 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT-----
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC-----
Confidence 7899999999 998 3 5678999999999999999765 67788889999999999999767776655554
Q ss_pred cCCCceeEEEeeCCccc----------CCCCcEEEccCCeeeecCC
Q 046299 101 SFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 101 ~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g~iP 136 (138)
|++|++++|+++ .++|+.|++++|++++ +|
T Consensus 97 -----L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~ 136 (168)
T 2ell_A 97 -----LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LN 136 (168)
T ss_dssp -----CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-ST
T ss_pred -----CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hH
Confidence 999999999998 3689999999999987 44
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-16 Score=116.84 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=19.3
Q ss_pred CcEEEccCccccC----cCCccccCCCCCCCccEEEccc-ccc
Q 046299 1 MKDLFVGNNRLNG----TLTKASDSFPSFSFWTSLIILR-KLA 38 (138)
Q Consensus 1 L~~L~Ls~N~l~~----~~p~~~~~l~~~~~L~~L~Ls~-~l~ 38 (138)
|++|+|++|.+++ .+|..+..+ ++|++|+|++ .++
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~---~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKH---TPLEHLYLHNNGLG 135 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHC---TTCCEEECCSSCCH
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhC---CCCCEEECcCCCCC
Confidence 4556666666654 244455555 5555555555 554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.3e-16 Score=113.13 Aligned_cols=129 Identities=9% Similarity=0.049 Sum_probs=77.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
++.|++++|.+++..+. +..+ ++|++|++++ .+++ ..+..+++|++|++++|.++...+..+..+.+|++|
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~---~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSP---FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCC---BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ceEEEcCCccccccchh-hccC---CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 35667777777665443 4456 7777777777 6654 456667777777777776665555555556667777
Q ss_pred EecCC-cCCCC-CCCCCCCCCC--eEEec--------------cCCC-ceeEEEeeCCc--cc----------CCCCcEE
Q 046299 76 ILGSC-KMGPG-FPNPIPEMPH--DVLIS--------------SFQQ-YVFRVDIYFQQ--YV----------SQSWTII 124 (138)
Q Consensus 76 ~l~~n-~l~~~-~p~~~~~l~~--~L~ls--------------~~l~-~L~~L~ls~N~--l~----------~~~L~~L 124 (138)
++++| .+++. +|..+..+++ +|+++ ..++ +|++|++++|+ ++ .++|+.|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 77776 45532 4444444444 55554 2344 67777777763 32 3566666
Q ss_pred EccCCe-eee
Q 046299 125 DLGINK-FSG 133 (138)
Q Consensus 125 ~Ls~N~-l~g 133 (138)
++++|. +++
T Consensus 228 ~l~~~~~l~~ 237 (336)
T 2ast_B 228 DLSDSVMLKN 237 (336)
T ss_dssp ECTTCTTCCG
T ss_pred eCCCCCcCCH
Confidence 666666 443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.4e-14 Score=110.22 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=15.1
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccc
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRT 59 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~ 59 (138)
++|++|++++ ++++ +. .+++|++|++++|.++
T Consensus 81 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCC
T ss_pred CCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC
Confidence 4555555555 5444 22 3444444444444443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=97.73 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=86.4
Q ss_pred ccccCCCCCCCccEEEccc-cccc-ccccCCC-CCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCC-CCC
Q 046299 17 KASDSFPSFSFWTSLIILR-KLAG-DIITNLS-RLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNP-IPE 92 (138)
Q Consensus 17 ~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~-~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~ 92 (138)
..+.++ .+|++|++++ +++. +.+..+. +|++|++++|.+++. ..+..+.+|++|++++|++++ +|+. +..
T Consensus 13 ~~~~~~---~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~ 86 (176)
T 1a9n_A 13 AQYTNA---VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQA 86 (176)
T ss_dssp CEEECT---TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHH
T ss_pred HhcCCc---CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhc
Confidence 346677 9999999999 9998 6666666 999999999999865 577888899999999999984 5544 355
Q ss_pred CCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeeecCCC
Q 046299 93 MPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 93 l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+++ |++|++++|+|+ .++|+.|++++|+++. +|.
T Consensus 87 l~~----------L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~ 130 (176)
T 1a9n_A 87 LPD----------LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKH 130 (176)
T ss_dssp CTT----------CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STT
T ss_pred CCC----------CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHh
Confidence 544 999999999997 3689999999999985 553
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=109.54 Aligned_cols=49 Identities=20% Similarity=0.076 Sum_probs=26.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCcc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLR 58 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l 58 (138)
|++|++++|+|++ +|. .+ ++|++|++++ ++++ .. .+++|+.|++++|++
T Consensus 83 L~~L~Ls~N~l~~-lp~---~l---~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l 133 (622)
T 3g06_A 83 LRTLEVSGNQLTS-LPV---LP---PGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQL 133 (622)
T ss_dssp CCEEEECSCCCSC-CCC---CC---TTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCC
T ss_pred CCEEEcCCCcCCc-CCC---CC---CCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCC
Confidence 4667777777754 443 44 6666666666 6655 22 333444444444443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-16 Score=115.04 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=76.7
Q ss_pred CcEEEccCcccc-CcCC---ccccCCCCCCCccEEEccc-cccc-------c-cccCCCCCCEEEcccCccc----eeCC
Q 046299 1 MKDLFVGNNRLN-GTLT---KASDSFPSFSFWTSLIILR-KLAG-------D-IITNLSRLAHMDLSFDLRT----FNFS 63 (138)
Q Consensus 1 L~~L~Ls~N~l~-~~~p---~~~~~l~~~~~L~~L~Ls~-~l~~-------~-~~~~l~~L~~L~ls~N~l~----~~~~ 63 (138)
|++|++++|+++ +.+| ..+..+ ++|++|++++ +++. . .+..+++|++|++++|.++ ..+|
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~---~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHC---TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhC---CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 455666666664 2233 244455 6666666666 6652 2 5556666666666666664 3444
Q ss_pred CCCccccCcceEEecCCcCCCC----CCCCCCCCCCeEEeccCCCceeEEEeeCCccc--------------CCCCcEEE
Q 046299 64 SGWIPPFQLNTIILGSCKMGPG----FPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--------------SQSWTIID 125 (138)
Q Consensus 64 ~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--------------~~~L~~L~ 125 (138)
..+..+.+|++|++++|.+++. +|..+.. +.+++|++|++++|+++ .++|++|+
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--------~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSK--------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT--------CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhh--------ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 4555555666666666666533 2333311 11456999999999998 38899999
Q ss_pred ccCCeeeecC
Q 046299 126 LGINKFSGQY 135 (138)
Q Consensus 126 Ls~N~l~g~i 135 (138)
+++|++++..
T Consensus 310 l~~N~l~~~~ 319 (386)
T 2ca6_A 310 LNGNRFSEED 319 (386)
T ss_dssp CTTSBSCTTS
T ss_pred ccCCcCCcch
Confidence 9999998754
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=95.59 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=75.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|+|++..|..|..+ ++|++|+|++ ++++ ..|..+++|++|++++|++++..+..+..+.+|++|+
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l---~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRL---TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEcCCCcCCccChhhhcCc---ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 5789999999999889999999 9999999999 9999 5689999999999999999877776788899999999
Q ss_pred ecCCcCCCC
Q 046299 77 LGSCKMGPG 85 (138)
Q Consensus 77 l~~n~l~~~ 85 (138)
+++|.++..
T Consensus 109 L~~N~~~c~ 117 (170)
T 3g39_A 109 LLNNPWDCA 117 (170)
T ss_dssp CCSSCBCTT
T ss_pred eCCCCCCCC
Confidence 999999843
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-14 Score=103.46 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=84.8
Q ss_pred EEEccCc-cccCcCCccccCCCCCCCccEEEcc-c-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 3 DLFVGNN-RLNGTLTKASDSFPSFSFWTSLIIL-R-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 3 ~L~Ls~N-~l~~~~p~~~~~l~~~~~L~~L~Ls-~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
.++.+++ ++++ +|. +..+ ++|++|+|+ . ++++ ..|.++++|++|+|++|+|++..|..|..+.+|++|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~---~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGA---ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSC---SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCc-cCC-CCCC---CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 4688888 8976 777 9999 999999998 5 8888 6799999999999999999999998999999999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
|++|+|+ .+|..+.... .|+.|++++|.+.
T Consensus 87 l~~N~l~-~~~~~~~~~~----------~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNALE-SLSWKTVQGL----------SLQELVLSGNPLH 116 (347)
T ss_dssp CCSSCCS-CCCSTTTCSC----------CCCEEECCSSCCC
T ss_pred CCCCccc-eeCHHHcccC----------CceEEEeeCCCcc
Confidence 9999998 4555443322 2899999999987
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-16 Score=113.63 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=90.1
Q ss_pred CcEEEccCccccCc-CCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccC-ccce-eCCCCCccccCcc
Q 046299 1 MKDLFVGNNRLNGT-LTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFD-LRTF-NFSSGWIPPFQLN 73 (138)
Q Consensus 1 L~~L~Ls~N~l~~~-~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N-~l~~-~~~~~~~~~~~L~ 73 (138)
|++|++++|.+++. +|..+..+ ++|++|++++ .+++ ..++.+++|++|++++| .+++ .++..+..+.+|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~---~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQC---SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTB---CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCEEEccCCCcCHHHHHHHHhhC---CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 57888888888765 67777788 8888888888 8776 66777888888888888 5654 2444455666788
Q ss_pred eEEecCC-cCCCC-CCCCCCCCC-C--eEEec---------------cCCCceeEEEeeCCc-cc---------CCCCcE
Q 046299 74 TIILGSC-KMGPG-FPNPIPEMP-H--DVLIS---------------SFQQYVFRVDIYFQQ-YV---------SQSWTI 123 (138)
Q Consensus 74 ~L~l~~n-~l~~~-~p~~~~~l~-~--~L~ls---------------~~l~~L~~L~ls~N~-l~---------~~~L~~ 123 (138)
+|++++| .+++. ++..+..++ + +|+++ ..+++|++|++++|. ++ .++|+.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 8888888 77643 455555555 4 66665 345678888888887 44 367777
Q ss_pred EEccCCe
Q 046299 124 IDLGINK 130 (138)
Q Consensus 124 L~Ls~N~ 130 (138)
|++++|.
T Consensus 252 L~l~~~~ 258 (336)
T 2ast_B 252 LSLSRCY 258 (336)
T ss_dssp EECTTCT
T ss_pred eeCCCCC
Confidence 7777774
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-14 Score=95.00 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=75.3
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|++|++++|+|++..|..|+.+ ++|++|+|++ ++++ ..|.++++|++|++++|++++..+..+..+.+|++|+
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHL---VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CcEEEeCCCCccccCHHHhcCC---cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 6899999999999889999999 9999999999 9999 5589999999999999999866666688889999999
Q ss_pred ecCCcCCCCCCC
Q 046299 77 LGSCKMGPGFPN 88 (138)
Q Consensus 77 l~~n~l~~~~p~ 88 (138)
+++|.+. ..|.
T Consensus 112 L~~N~~~-c~~~ 122 (174)
T 2r9u_A 112 LYNNPWD-CECR 122 (174)
T ss_dssp CCSSCBC-TTBG
T ss_pred eCCCCcc-cccc
Confidence 9999998 4444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-14 Score=109.72 Aligned_cols=85 Identities=19% Similarity=0.125 Sum_probs=77.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeC-CCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNF-SSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~-~~~~~~~~~L~~L~l 77 (138)
|+.|++++|+|+ .+|..++.+ ++|++|+|++ ++++ +.|+.+++|++|++++|++++.. |..+..+.+|++|++
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l---~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAAL---RCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGC---TTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred CcEeecCccccc-ccchhhhcC---CCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 689999999998 689999999 9999999999 9999 88999999999999999998776 889999999999999
Q ss_pred cCCcCCCCCCCCC
Q 046299 78 GSCKMGPGFPNPI 90 (138)
Q Consensus 78 ~~n~l~~~~p~~~ 90 (138)
++|.+++. |+..
T Consensus 541 ~~N~l~~~-~~~~ 552 (567)
T 1dce_A 541 QGNSLCQE-EGIQ 552 (567)
T ss_dssp TTSGGGGS-SSCT
T ss_pred cCCcCCCC-ccHH
Confidence 99999854 4443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-13 Score=98.65 Aligned_cols=132 Identities=11% Similarity=0.001 Sum_probs=90.0
Q ss_pred CcEEEccCccccCcCC-ccccCCCCCCCccE-EEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCC--------
Q 046299 1 MKDLFVGNNRLNGTLT-KASDSFPSFSFWTS-LIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGW-------- 66 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p-~~~~~l~~~~~L~~-L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~-------- 66 (138)
|++|+|++|++.+.+| ..|.++ ++++. ++++. +++. ..|..+++|++|++++|+++...+..+
T Consensus 56 L~~L~Ls~N~i~~~i~~~~f~~L---~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 56 LEKIEISQNDVLEVIEADVFSNL---PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp CCEEEEECCTTCCEECTTSBCSC---TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred CCEEECcCCCCCCccChhHhhcc---hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence 6889999999876555 467778 77765 44555 7777 678888888888888888764333222
Q ss_pred -----------------ccc-cCcceEEecCCcCCCCCCCCCCCCCC--eEEec-------------cCCCceeEEEeeC
Q 046299 67 -----------------IPP-FQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-------------SFQQYVFRVDIYF 113 (138)
Q Consensus 67 -----------------~~~-~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-------------~~l~~L~~L~ls~ 113 (138)
... ..+++|++++|+|+ .+|.......+ .++++ ..+++|++||+++
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 222 24677888888887 55555444444 66665 4567999999999
Q ss_pred Cccc------CCCCcEEEccCCeeeecCC
Q 046299 114 QQYV------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 114 N~l~------~~~L~~L~Ls~N~l~g~iP 136 (138)
|+|+ ..+|+.|.+.++.--..+|
T Consensus 212 N~l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 212 TRIHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp SCCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred CCcCccChhhhccchHhhhccCCCcCcCC
Confidence 9999 4567788765544333355
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.46 E-value=5.3e-15 Score=112.30 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=20.1
Q ss_pred CCceeEEEeeCCccc-------------CCCCcEEEccCCeeee
Q 046299 103 QQYVFRVDIYFQQYV-------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 103 l~~L~~L~ls~N~l~-------------~~~L~~L~Ls~N~l~g 133 (138)
.++|++|++++|+++ .++|++|++++|++++
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 456677777777665 2567777777776654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-15 Score=111.24 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=23.7
Q ss_pred cEEEccCccccCcCCcc-ccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCcc
Q 046299 2 KDLFVGNNRLNGTLTKA-SDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLR 58 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~-~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l 58 (138)
++||+++|+++...... +..+ ++|++|++++ .+++ ..+..+++|++|++++|.+
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~---~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 68 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 68 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHH---TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred eehhhhhcccCchhHHHHHhhc---CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC
Confidence 34555555543322111 3344 4455555554 4442 2233444455555555544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-15 Score=102.20 Aligned_cols=113 Identities=11% Similarity=0.093 Sum_probs=92.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|++++|.+++ +| .+..+ ++|++|++++ .++. ..+..+++|++|++++|++++ +| .+..+.+|++|++
T Consensus 50 L~~L~ls~n~l~~-l~-~~~~l---~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 50 CKHLALSTNNIEK-IS-SLSGM---ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp CSEEECSEEEESC-CC-CHHHH---TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCEEECCCCCCcc-cc-ccccC---CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 6899999999987 67 88899 9999999999 9988 556677999999999999975 44 5677789999999
Q ss_pred cCCcCCCCCCC--CCCCCCCeEEeccCCCceeEEEeeCCccc-------------------CCCCcEEEccCCeeee
Q 046299 78 GSCKMGPGFPN--PIPEMPHDVLISSFQQYVFRVDIYFQQYV-------------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 78 ~~n~l~~~~p~--~~~~l~~~L~ls~~l~~L~~L~ls~N~l~-------------------~~~L~~L~Ls~N~l~g 133 (138)
++|++++ +|. .+..++ +|++|++++|+++ .++|+.|| +|.++.
T Consensus 123 ~~N~i~~-~~~~~~l~~l~----------~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 123 SNNKITN-WGEIDKLAALD----------KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEECCC-HHHHHHHTTTT----------TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCcCCc-hhHHHHHhcCC----------CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999983 333 455554 4999999999983 46788886 666543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=94.45 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=69.8
Q ss_pred CcEEEccC-ccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGN-NRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~-N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|+|++ |+|++..|..|+.+ ++|++|+|++ +|++ ..|.++++|++|+|++|+|++..+..+..+ .|++|
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~L~~l 108 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGL---GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL 108 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSC---CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred eeEEEccCCCCCCCcChhHhccc---cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccC-CceEE
Confidence 68999996 99999888899999 9999999999 9999 678999999999999999986555555444 59999
Q ss_pred EecCCcCC
Q 046299 76 ILGSCKMG 83 (138)
Q Consensus 76 ~l~~n~l~ 83 (138)
++.+|.+.
T Consensus 109 ~l~~N~~~ 116 (347)
T 2ifg_A 109 VLSGNPLH 116 (347)
T ss_dssp ECCSSCCC
T ss_pred EeeCCCcc
Confidence 99999987
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-14 Score=106.23 Aligned_cols=133 Identities=9% Similarity=0.119 Sum_probs=81.9
Q ss_pred CcEEEccCccccCcCCccccCC--CCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCC-----cc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSF--PSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGW-----IP 68 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l--~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~-----~~ 68 (138)
|++|++++|.++......+... ..+++|+.|+|++ .++. .....+++|++|++++|.++......+ ..
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence 4677888887765322222211 0115777888877 7765 222345567777777777753221111 12
Q ss_pred ccCcceEEecCCcCCCC----CCCCCCCCCC--eEEec----------------cCCCceeEEEeeCCccc---------
Q 046299 69 PFQLNTIILGSCKMGPG----FPNPIPEMPH--DVLIS----------------SFQQYVFRVDIYFQQYV--------- 117 (138)
Q Consensus 69 ~~~L~~L~l~~n~l~~~----~p~~~~~l~~--~L~ls----------------~~l~~L~~L~ls~N~l~--------- 117 (138)
..+|++|++++|.++.. ++..+...+. +||++ ...++|++|++++|+|+
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 34677777777777531 2223333444 67766 34567999999999998
Q ss_pred ----CCCCcEEEccCCeeee
Q 046299 118 ----SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 ----~~~L~~L~Ls~N~l~g 133 (138)
.++|++|||++|.|+.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 3789999999999864
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-11 Score=88.47 Aligned_cols=131 Identities=8% Similarity=-0.033 Sum_probs=95.4
Q ss_pred CcEEEccCcccc--------------------CcCCccccC--------CCCCCCccEEEccccccc---ccccCCCCCC
Q 046299 1 MKDLFVGNNRLN--------------------GTLTKASDS--------FPSFSFWTSLIILRKLAG---DIITNLSRLA 49 (138)
Q Consensus 1 L~~L~Ls~N~l~--------------------~~~p~~~~~--------l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~ 49 (138)
|++|||++|++. .+.+.+|.+ + ++|+.+++++.++. .+|.++++|+
T Consensus 51 L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~---~~L~~l~L~~~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 51 LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK---QTLEKVILSEKIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp CCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC---TTCCC-CBCTTCCEECTTTTTTCTTCC
T ss_pred CeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccccc---CCCcEEECCccccchhHHHhhcCcccc
Confidence 688999999997 223345666 7 99999999874444 8899999999
Q ss_pred EEEcccCccceeCCCCCc--------------------------------------------------------------
Q 046299 50 HMDLSFDLRTFNFSSGWI-------------------------------------------------------------- 67 (138)
Q Consensus 50 ~L~ls~N~l~~~~~~~~~-------------------------------------------------------------- 67 (138)
.+++++|.++...+..|.
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 999999975321111110
Q ss_pred ----------------cccCcceEEecCCcCCCCCCCCCCCCCC--eEEec-----------cCCCcee-EEEeeCCccc
Q 046299 68 ----------------PPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS-----------SFQQYVF-RVDIYFQQYV 117 (138)
Q Consensus 68 ----------------~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls-----------~~l~~L~-~L~ls~N~l~ 117 (138)
.+.+|+++++++|+++..-+..|..+.+ .++++ .++++|+ .+++.+ +++
T Consensus 208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cce
Confidence 1457899999999998444445777877 78876 5678898 999988 555
Q ss_pred ---------CCCCcEEEccCCeeeecCC
Q 046299 118 ---------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 118 ---------~~~L~~L~Ls~N~l~g~iP 136 (138)
..+|+.++++.|.++. |+
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~-I~ 313 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITT-LG 313 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCE-EC
T ss_pred EEchhhhhCCccCCEEEeCCCccCc-cc
Confidence 4789999999998876 44
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.2e-11 Score=92.85 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=48.5
Q ss_pred CcEEEccCccccCc----CCccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCccceeCCCCCcc
Q 046299 1 MKDLFVGNNRLNGT----LTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFNFSSGWIP 68 (138)
Q Consensus 1 L~~L~Ls~N~l~~~----~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 68 (138)
|++|++++|.+++. ++..+..+ ++|++|++++ .+++ ..+.++++|++|++++|.+.+ ++..+..
T Consensus 166 L~~L~L~~~~~~~~~~~~l~~~~~~~---~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 166 IKTLLMEESSFSEKDGKWLHELAQHN---TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CSEEECTTCEEECCCSHHHHHHHHHC---CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCEEECccccccCcchhHHHHHHhcC---CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 56778888877654 23334556 7788888877 7762 345567788888888877654 3344445
Q ss_pred ccCcceEEecC
Q 046299 69 PFQLNTIILGS 79 (138)
Q Consensus 69 ~~~L~~L~l~~ 79 (138)
+.+|++|+++.
T Consensus 242 ~~~L~~L~l~~ 252 (592)
T 3ogk_B 242 AANLEEFCGGS 252 (592)
T ss_dssp CTTCCEEEECB
T ss_pred hhHHHhhcccc
Confidence 55666666654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-11 Score=92.66 Aligned_cols=129 Identities=10% Similarity=0.102 Sum_probs=71.9
Q ss_pred CcEEEccCccccCcCCccc-cCCCCCCCccEEEccc-cccc---ccc-----cCCCCCCEEEcccCccce----eCCCCC
Q 046299 1 MKDLFVGNNRLNGTLTKAS-DSFPSFSFWTSLIILR-KLAG---DII-----TNLSRLAHMDLSFDLRTF----NFSSGW 66 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~-~~l~~~~~L~~L~Ls~-~l~~---~~~-----~~l~~L~~L~ls~N~l~~----~~~~~~ 66 (138)
|++|+|++|.++......+ ..+ ++|+.|+|++ .++. ..+ ...++|++|++++|.++. .++..+
T Consensus 103 L~~L~Ls~n~l~~~~~~~l~~~L---~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 103 LDEVNLASCQLDPAGLRTLLPVF---LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp EEEEECTTCCCCHHHHHHTHHHH---HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHHHHH---HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3567777777754322222 234 5677777777 6665 222 245667777777777642 122222
Q ss_pred ccccCcceEEecCCcCCCC----CCCCCCCCCC--eEEec----------------cCCCceeEEEeeCCccc-------
Q 046299 67 IPPFQLNTIILGSCKMGPG----FPNPIPEMPH--DVLIS----------------SFQQYVFRVDIYFQQYV------- 117 (138)
Q Consensus 67 ~~~~~L~~L~l~~n~l~~~----~p~~~~~l~~--~L~ls----------------~~l~~L~~L~ls~N~l~------- 117 (138)
....+|++|++++|.+++. ++..+...+. +|+++ ...++|++|++++|.|+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3445677777777776531 2233333333 66666 23477999999999998
Q ss_pred -----CC--CCcEEE--ccCCeee
Q 046299 118 -----SQ--SWTIID--LGINKFS 132 (138)
Q Consensus 118 -----~~--~L~~L~--Ls~N~l~ 132 (138)
.. .++.+. +..|.++
T Consensus 260 ~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 260 RDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHCC------CEEECCCC----CH
T ss_pred HHHhcCCCccchhhHhhhcCCccC
Confidence 12 277776 6666654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=9.9e-10 Score=85.61 Aligned_cols=130 Identities=8% Similarity=0.004 Sum_probs=84.2
Q ss_pred CcEEEccCccccC----cCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcc-------------------
Q 046299 1 MKDLFVGNNRLNG----TLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLS------------------- 54 (138)
Q Consensus 1 L~~L~Ls~N~l~~----~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls------------------- 54 (138)
|++|++++|.+++ .++..+..+ ++|++|++++ .+.+ ..+..+++|++|+++
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~---~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNC---RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHC---TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhC---CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 5677777777762 233444566 7777777777 6655 445555555655555
Q ss_pred --------cCccceeCCCCCccccCcceEEecCCcCCCCCC-CCCCCCCC--eEEec------------cCCCceeEEEe
Q 046299 55 --------FDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFP-NPIPEMPH--DVLIS------------SFQQYVFRVDI 111 (138)
Q Consensus 55 --------~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~--~L~ls------------~~l~~L~~L~l 111 (138)
++.. ..+|..+..+.+|++|++++|.+++... ..+..+++ +|+++ ..+++|++|++
T Consensus 271 ~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 3211 2334444556689999999998764433 22455555 66664 45788999999
Q ss_pred e-----------CCccc----------CCCCcEEEccCCeeeec
Q 046299 112 Y-----------FQQYV----------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 112 s-----------~N~l~----------~~~L~~L~Ls~N~l~g~ 134 (138)
+ .|.++ .++|++|+++.|.+++.
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 9 46777 47899999988888753
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.92 E-value=8e-09 Score=75.56 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=44.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccccccc---ccccCCCCCC-EEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAG---DIITNLSRLA-HMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~-~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|+.+++++|+++.+.+.+|.++ .+|+.++++++++. .+|.++++|+ .+++.+ .++...+.+|..+.+|+.++
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~---~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQK---KYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTC---TTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CeEEECCCCCcceecHhhhhCC---CCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 3455555555554444455555 55555555442222 4555555555 555555 44434444555555555555
Q ss_pred ecCCcCCCCCCCCCCCC
Q 046299 77 LGSCKMGPGFPNPIPEM 93 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l 93 (138)
+++|+++..-+..|.++
T Consensus 304 l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNG 320 (329)
T ss_dssp ECSSCCCEECTTTTCTT
T ss_pred eCCCccCccchhhhcCC
Confidence 55555552223334443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-09 Score=73.79 Aligned_cols=97 Identities=4% Similarity=-0.032 Sum_probs=68.5
Q ss_pred CCccEEEccc--cccc-------ccccCCCCCCEEEcccCcccee----CCCCCccccCcceEEecCCcCCCC----CCC
Q 046299 26 SFWTSLIILR--KLAG-------DIITNLSRLAHMDLSFDLRTFN----FSSGWIPPFQLNTIILGSCKMGPG----FPN 88 (138)
Q Consensus 26 ~~L~~L~Ls~--~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~p~ 88 (138)
+.|++|+|++ .+.. ..+...+.|++|++++|.+... +...+....+|++|++++|.|+.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 7888898887 4544 4566778899999999988521 222333445789999999988742 233
Q ss_pred CCCCCCCeEEeccCCCceeEEEe--eCCccc-------------CCCCcEEEccCCeee
Q 046299 89 PIPEMPHDVLISSFQQYVFRVDI--YFQQYV-------------SQSWTIIDLGINKFS 132 (138)
Q Consensus 89 ~~~~l~~~L~ls~~l~~L~~L~l--s~N~l~-------------~~~L~~L~Ls~N~l~ 132 (138)
.+... +.|++|++ ++|.|+ .++|++|+|++|.+.
T Consensus 116 ~L~~n----------~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSN----------TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGC----------SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhC----------CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 33333 34899999 889888 378999999999874
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-10 Score=76.70 Aligned_cols=108 Identities=10% Similarity=0.135 Sum_probs=77.4
Q ss_pred CcEEEccCc-cccCc----CCccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCcccee----CC
Q 046299 1 MKDLFVGNN-RLNGT----LTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFN----FS 63 (138)
Q Consensus 1 L~~L~Ls~N-~l~~~----~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~ 63 (138)
|++|+|++| .+... +...+... ++|++|+|++ .+.. ..+...+.|++|++++|.|+.. +.
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~---~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTN---TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTC---CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhC---CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 678999999 88542 34455667 8999999999 9986 4456678999999999999632 33
Q ss_pred CCCccccCcceEEe--cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 64 SGWIPPFQLNTIIL--GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 64 ~~~~~~~~L~~L~l--~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
..+....+|++|++ ++|.++..-...+...- ...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L------~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANML------EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH------HHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH------HhCCCcCEEeccCCCCC
Confidence 44555668999999 88999743211111100 12345999999999885
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-10 Score=89.88 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=56.9
Q ss_pred CCccEEEccc-cccc---cccc-CCCCCCEEEcc--c----Ccccee-----CCCCCccccCcceEEecCCcCCCCCCCC
Q 046299 26 SFWTSLIILR-KLAG---DIIT-NLSRLAHMDLS--F----DLRTFN-----FSSGWIPPFQLNTIILGSCKMGPGFPNP 89 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~-~l~~L~~L~ls--~----N~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 89 (138)
++|+.|+++. .+++ ..+. .+++|+.|+++ + |.++.. ++..+..+.+|++|++++ .+++..+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 6666666665 6655 2332 46666777666 2 333311 000122334566666644 444322222
Q ss_pred CCC-CCC--eEEec-------------cCCCceeEEEeeCCccc----------CCCCcEEEccCCeee
Q 046299 90 IPE-MPH--DVLIS-------------SFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFS 132 (138)
Q Consensus 90 ~~~-l~~--~L~ls-------------~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~ 132 (138)
+.. +++ +|+++ ..+++|++|++++|.++ .++|+.|++++|+++
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 222 222 44444 23567888888888876 367888888888764
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-08 Score=72.46 Aligned_cols=79 Identities=20% Similarity=0.131 Sum_probs=54.2
Q ss_pred EEccCccc---cCcCCccccCCCCCCCccEEEccc-cccc-c----cccCCCCCCEEEcccCccceeCCCCCcccc--Cc
Q 046299 4 LFVGNNRL---NGTLTKASDSFPSFSFWTSLIILR-KLAG-D----IITNLSRLAHMDLSFDLRTFNFSSGWIPPF--QL 72 (138)
Q Consensus 4 L~Ls~N~l---~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~----~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~--~L 72 (138)
++++.|+. .+.++....++ ++|+.|+|++ ++++ . .+..+++|+.|+|++|+|++. ..+..+. +|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l---~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L 222 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENI---PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKL 222 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHC---TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCC
T ss_pred ccccCCHHHHHHHHHHHHHhhC---CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCc
Confidence 45666643 22222222457 8899999999 8887 3 345789999999999998753 2233333 78
Q ss_pred ceEEecCCcCCCCCC
Q 046299 73 NTIILGSCKMGPGFP 87 (138)
Q Consensus 73 ~~L~l~~n~l~~~~p 87 (138)
++|++++|.+.+.+|
T Consensus 223 ~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 223 EELWLDGNSLCDTFR 237 (267)
T ss_dssp SEEECTTSTTGGGCS
T ss_pred ceEEccCCcCccccC
Confidence 999999999987666
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-08 Score=74.99 Aligned_cols=57 Identities=12% Similarity=0.009 Sum_probs=35.6
Q ss_pred cCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc-------------CCCCcEEEccCCeeee
Q 046299 70 FQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV-------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 70 ~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~-------------~~~L~~L~Ls~N~l~g 133 (138)
++|++|++.+|.+++..+..+... ..+++|++|+++.|.++ .++|+.|++++|.++.
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a-------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLES-------DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHC-------SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhC-------ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 456666666665543221111110 23567999999999887 2678999999888763
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-08 Score=79.49 Aligned_cols=84 Identities=10% Similarity=0.072 Sum_probs=55.4
Q ss_pred CCccEEEccc-cccc---cccc-CCCCCCEEEcccC-cccee-CCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEE
Q 046299 26 SFWTSLIILR-KLAG---DIIT-NLSRLAHMDLSFD-LRTFN-FSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVL 98 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~-~l~~L~~L~ls~N-~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ 98 (138)
++|++|++++ .+++ ..+. .+++|++|++++| .++.. ++.....+.+|++|++++|.+++..+.++..+..
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--- 181 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD--- 181 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT---
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh---
Confidence 8899999999 8877 4444 6889999999988 45321 2223335678999999999987655555443321
Q ss_pred eccCCCceeEEEeeCCc
Q 046299 99 ISSFQQYVFRVDIYFQQ 115 (138)
Q Consensus 99 ls~~l~~L~~L~ls~N~ 115 (138)
.+++|+.|++++|.
T Consensus 182 ---~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 ---TYTSLVSLNISCLA 195 (594)
T ss_dssp ---TCCCCCEEECTTCC
T ss_pred ---cCCcCcEEEecccC
Confidence 23345555555554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-06 Score=64.78 Aligned_cols=127 Identities=9% Similarity=0.019 Sum_probs=68.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccC---------------------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFD--------------------- 56 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N--------------------- 56 (138)
|+.+++++|+++.....+|. . .+|+.+.+...++. ..|.++++|+.+++..|
T Consensus 182 L~~l~l~~n~l~~I~~~aF~-~---~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~ 257 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFV-Y---AGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPN 257 (401)
T ss_dssp CCEEECTTSCCSEECTTTTT-T---CCCSEEECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEET
T ss_pred CCeeecCCCcceEechhhEe-e---cccCEEEeCCchheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCC
Confidence 56777777776543333332 3 45555555432222 44444444444444432
Q ss_pred ccceeCCCCCccccCcceEEecCCcCC-----CCCCCCCCCCCC--eEEec-----------cCCCceeEEEeeCCccc-
Q 046299 57 LRTFNFSSGWIPPFQLNTIILGSCKMG-----PGFPNPIPEMPH--DVLIS-----------SFQQYVFRVDIYFQQYV- 117 (138)
Q Consensus 57 ~l~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~p~~~~~l~~--~L~ls-----------~~l~~L~~L~ls~N~l~- 117 (138)
.++..-+.+|..+.+|+.+.+.+|.+. ..-+..|..+.+ .+++. .++++|+.+++..| ++
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 233333455666667777777766653 123344555555 45544 45567777777554 33
Q ss_pred -------CCCCcEEEccCCeee
Q 046299 118 -------SQSWTIIDLGINKFS 132 (138)
Q Consensus 118 -------~~~L~~L~Ls~N~l~ 132 (138)
..+|+.+++++|.+.
T Consensus 337 I~~~aF~~~~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 337 INFSAFNNTGIKEVKVEGTTPP 358 (401)
T ss_dssp ECTTSSSSSCCCEEEECCSSCC
T ss_pred EcHHhCCCCCCCEEEEcCCCCc
Confidence 136777777777654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.41 E-value=4.3e-08 Score=70.36 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=47.0
Q ss_pred cCCCCCCEEEcccCccce--eCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 43 TNLSRLAHMDLSFDLRTF--NFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 43 ~~l~~L~~L~ls~N~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
.++++|+.|+|++|+|++ .+|..+..+.+|+.|+|++|+|++. ..+..+.. + +|++|++++|.++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~-------l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG-------L-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT-------S-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc-------C-CcceEEccCCcCc
Confidence 568889999999999876 4455555677899999999998743 22333321 2 5888999988875
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.33 E-value=4.4e-06 Score=62.97 Aligned_cols=103 Identities=8% Similarity=-0.109 Sum_probs=52.9
Q ss_pred CccEEEccccccc---ccccCCCCCCEEEcccCccc-----eeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--e
Q 046299 27 FWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRT-----FNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--D 96 (138)
Q Consensus 27 ~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~ 96 (138)
+|+.+++...++. ..|.++++|+.+++.+|.+. ...+..|..+.+|+.+.+. +.++..-...|..+.+ .
T Consensus 249 ~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 249 GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCE
T ss_pred CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccE
Confidence 4555555333322 45555555555555554442 2333444444455555555 2243222233444443 3
Q ss_pred EEec-----------cCCCceeEEEeeCCccc----------CCCCcEEEccCCee
Q 046299 97 VLIS-----------SFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKF 131 (138)
Q Consensus 97 L~ls-----------~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l 131 (138)
+++. ..+ +|+.+++++|.+. +..++.+++..+.+
T Consensus 328 l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 328 LTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4433 334 6999999998876 34667777766543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.5e-07 Score=67.15 Aligned_cols=105 Identities=9% Similarity=0.126 Sum_probs=65.1
Q ss_pred CCccEEEccc-cccc------------ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCC-
Q 046299 26 SFWTSLIILR-KLAG------------DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIP- 91 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~------------~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~- 91 (138)
++|+.|.+.. .... ..+..+++|+.|++++|.- ..++. + ...+|+.|++..|.++......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence 6777777754 3311 2345667888888877631 12232 2 255777777777776532111111
Q ss_pred -CCCC--eEEec---------------------cCCCceeEEEeeCCccc------------CCCCcEEEccCCeeee
Q 046299 92 -EMPH--DVLIS---------------------SFQQYVFRVDIYFQQYV------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 92 -~l~~--~L~ls---------------------~~l~~L~~L~ls~N~l~------------~~~L~~L~Ls~N~l~g 133 (138)
.+++ .|+++ ..+++|++|++++|.++ .++|++|||+.|.+++
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2233 34331 24689999999999986 3689999999999875
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-07 Score=62.70 Aligned_cols=82 Identities=6% Similarity=-0.134 Sum_probs=54.4
Q ss_pred CCccEEEccc-cccc---ccccCCCCCCEEEcccCc-cceeCCCCCcc----ccCcceEEecCCc-CCCCCCCCCCCCCC
Q 046299 26 SFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDL-RTFNFSSGWIP----PFQLNTIILGSCK-MGPGFPNPIPEMPH 95 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~-l~~~~~~~~~~----~~~L~~L~l~~n~-l~~~~p~~~~~l~~ 95 (138)
.+|+.||+++ .++. ..+.++++|+.|+++++. ++-.--..+.. ..+|++|++++|. +|..--..+.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~--- 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH--- 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG---
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc---
Confidence 4689999999 8876 677889999999999985 54211111222 2368999999985 76321122333
Q ss_pred eEEeccCCCceeEEEeeCCc-cc
Q 046299 96 DVLISSFQQYVFRVDIYFQQ-YV 117 (138)
Q Consensus 96 ~L~ls~~l~~L~~L~ls~N~-l~ 117 (138)
+++|++|+++++. ++
T Consensus 138 -------~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 138 -------FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp -------CTTCCEEEEESCTTCC
T ss_pred -------CCCCCEEECCCCCCCC
Confidence 3458899998874 54
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.88 E-value=2.5e-06 Score=57.57 Aligned_cols=78 Identities=6% Similarity=0.017 Sum_probs=47.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc--cccc---ccccCC----CCCCEEEcccCc-cceeCCCCCcccc
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR--KLAG---DIITNL----SRLAHMDLSFDL-RTFNFSSGWIPPF 70 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~--~l~~---~~~~~l----~~L~~L~ls~N~-l~~~~~~~~~~~~ 70 (138)
|++||++++.++..--..+..+ ++|+.|+|++ .+++ ..++.+ ++|++|+++++. ++-.--..+..+.
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~---~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGL---QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTC---SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred EeEEeCcCCCccHHHHHHhcCC---CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4677777777655433444555 7777777777 5665 445553 367777777763 5421112234556
Q ss_pred CcceEEecCCc
Q 046299 71 QLNTIILGSCK 81 (138)
Q Consensus 71 ~L~~L~l~~n~ 81 (138)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777775
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00036 Score=51.98 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=54.9
Q ss_pred ccccCCCCCCCccEEEccc-ccc-c-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCC
Q 046299 17 KASDSFPSFSFWTSLIILR-KLA-G-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEM 93 (138)
Q Consensus 17 ~~~~~l~~~~~L~~L~Ls~-~l~-~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l 93 (138)
.+|.++ ..|+.+.+.. ..+ + ..|.++++|+.+.+. +.++......|..+.+|+.+.+..+ ++..-...|.++
T Consensus 259 ~aF~~c---~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 259 HAFDSC---AYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTC---SSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ceeeec---ccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 345555 6667666655 211 1 566666666666664 3343344445555666666666543 332223345555
Q ss_pred CC--eEEec-----------cCCCceeEEEeeCCccc------CCCCcEEEccCCee
Q 046299 94 PH--DVLIS-----------SFQQYVFRVDIYFQQYV------SQSWTIIDLGINKF 131 (138)
Q Consensus 94 ~~--~L~ls-----------~~l~~L~~L~ls~N~l~------~~~L~~L~Ls~N~l 131 (138)
.+ .+.+. .++++|+.+++.++... ...|+.+.+..|.+
T Consensus 334 ~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 334 EQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred CCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 44 44443 44566888888877654 45677777666544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=1.6e-05 Score=54.44 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=60.3
Q ss_pred CCccEEEccc--cccc-------ccccCCCCCCEEEcccCccceeCCCC----CccccCcceEEecCCcCCCC----CCC
Q 046299 26 SFWTSLIILR--KLAG-------DIITNLSRLAHMDLSFDLRTFNFSSG----WIPPFQLNTIILGSCKMGPG----FPN 88 (138)
Q Consensus 26 ~~L~~L~Ls~--~l~~-------~~~~~l~~L~~L~ls~N~l~~~~~~~----~~~~~~L~~L~l~~n~l~~~----~p~ 88 (138)
+.|++|+|++ ++.. +.+..-+.|+.|+|++|.+.-.--.. +.....|++|+|++|.|++. +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 6788888875 4543 45666778888888888885221122 22334688888888888632 111
Q ss_pred CCCCCCCeEEeccCCCceeEEEeeCC---ccc-------------CCCCcEEEccCCee
Q 046299 89 PIPEMPHDVLISSFQQYVFRVDIYFQ---QYV-------------SQSWTIIDLGINKF 131 (138)
Q Consensus 89 ~~~~l~~~L~ls~~l~~L~~L~ls~N---~l~-------------~~~L~~L~Ls~N~l 131 (138)
.+..- +.|++|+|++| .+. -+.|+.|+++.|.+
T Consensus 121 aL~~N----------~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVT----------QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTT----------CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhC----------CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 22222 34888888765 334 36788888887764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00057 Score=43.49 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=37.6
Q ss_pred EEEccCcccc-CcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccc
Q 046299 3 DLFVGNNRLN-GTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRT 59 (138)
Q Consensus 3 ~L~Ls~N~l~-~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~ 59 (138)
.++.+++.++ ..+|..+. .++++|+|++ +|+. ..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC-----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677788886 24664332 4688888888 8877 66788888888888888763
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00057 Score=43.52 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=27.5
Q ss_pred EEEcccCccc-eeCCCCCccccCcceEEecCCcCCCCCCCC-CCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 50 HMDLSFDLRT-FNFSSGWIPPFQLNTIILGSCKMGPGFPNP-IPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 50 ~L~ls~N~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
.++.+++.++ ..+|..+. .++++|+|++|+|+ .+|.. |..++ +|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~----------~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALP----------ALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCT----------TCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhcc----------ccCEEEecCCCee
Confidence 4555555553 23443332 24666666666665 33332 33333 3666666666554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0018 Score=47.75 Aligned_cols=76 Identities=8% Similarity=0.006 Sum_probs=40.9
Q ss_pred CccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCC
Q 046299 16 TKASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPE 92 (138)
Q Consensus 16 p~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 92 (138)
..++.++ ..|+.+.+...++. ..|.++.+|+.+.+..+ ++......|..+.+|+.+.+.++.++..-...|.+
T Consensus 233 ~~~f~~~---~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 233 DGAFYGM---KALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp TTTTTTC---SSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred cccccCC---ccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 3445555 66666666542222 56666666666666543 33333445555666666666666665222334554
Q ss_pred CCC
Q 046299 93 MPH 95 (138)
Q Consensus 93 l~~ 95 (138)
+.+
T Consensus 309 c~~ 311 (379)
T 4h09_A 309 CVK 311 (379)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00012 Score=50.20 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=69.2
Q ss_pred CcEEEccCc-cccCc----CCccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCcccee----CC
Q 046299 1 MKDLFVGNN-RLNGT----LTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFN----FS 63 (138)
Q Consensus 1 L~~L~Ls~N-~l~~~----~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~ 63 (138)
|++|+|++| +|... +.+.+..- +.|+.|+|++ ++.. ..+..-+.|+.|+|++|.|+.. +-
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N---~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNS---KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTC---SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhC---CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 678999986 77431 33455556 8899999999 9986 4455678899999999999621 22
Q ss_pred CCCccccCcceEEecCCc---CCCC----CCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 64 SGWIPPFQLNTIILGSCK---MGPG----FPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 64 ~~~~~~~~L~~L~l~~n~---l~~~----~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
..+.....|++|++++|. +... +.+.+.. -+.|+.|+++.|.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~----------N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE----------NESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH----------CSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh----------CCCcCeEeccCCCcc
Confidence 233444579999998763 3321 1111221 235888888877653
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0069 Score=44.97 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=12.2
Q ss_pred CceeEEEeeCCccc---------CCCCcEEEccC
Q 046299 104 QYVFRVDIYFQQYV---------SQSWTIIDLGI 128 (138)
Q Consensus 104 ~~L~~L~ls~N~l~---------~~~L~~L~Ls~ 128 (138)
++|+.+++..| ++ ..+|+.+++..
T Consensus 343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 34666655544 32 24566665543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.012 Score=43.23 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=32.7
Q ss_pred ccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 17 KASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 17 ~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
.+|.++ .+|+.+.+...++. ..|.++++|+.+.+..+.++..-+.+|..+.+|+.+.+..
T Consensus 257 ~aF~~~---~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 257 FLLQNC---TALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTTTC---TTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccee---ehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 344444 55666665442222 5566666666666665555544445555555666666643
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0098 Score=44.13 Aligned_cols=102 Identities=10% Similarity=-0.010 Sum_probs=68.4
Q ss_pred CCccEEEcccccc--c-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec
Q 046299 26 SFWTSLIILRKLA--G-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 26 ~~L~~L~Ls~~l~--~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
..+....+...++ + ..|.++.+|+.+.+..+.. ..-...|..+.+|+.+.+. +.++..-...|..+.+ .+++.
T Consensus 242 ~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 242 REDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp CCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred cccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence 4455555544222 2 7888999999999877654 3445567777889999886 4455233345666666 67665
Q ss_pred -----------cCCCceeEEEeeCCccc---------CCCCcEEEccCCe
Q 046299 101 -----------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINK 130 (138)
Q Consensus 101 -----------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~ 130 (138)
.++.+|+.+.+..+ ++ ..+|+.+++.++.
T Consensus 320 ~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 320 EGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 56788888888655 33 4678888888764
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0024 Score=47.43 Aligned_cols=83 Identities=13% Similarity=0.028 Sum_probs=57.4
Q ss_pred ccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCC
Q 046299 17 KASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEM 93 (138)
Q Consensus 17 ~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l 93 (138)
..|..+ .+|+.+.+...++. .+|.++++|+.+++..+ ++..-..+|..+.+|+.+.+..+ ++..-..+|.++
T Consensus 291 ~~F~~~---~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 291 KTFYGC---SSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTTTC---TTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred cccccc---ccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 456667 88888888663333 78889999999998754 65555677888888999988766 553334456665
Q ss_pred CCeEEeccCCCceeEEEeeCC
Q 046299 94 PHDVLISSFQQYVFRVDIYFQ 114 (138)
Q Consensus 94 ~~~L~ls~~l~~L~~L~ls~N 114 (138)
.+ |+.+++..+
T Consensus 366 ~~----------L~~i~lp~~ 376 (394)
T 4fs7_A 366 IN----------LKKVELPKR 376 (394)
T ss_dssp TT----------CCEEEEEGG
T ss_pred CC----------CCEEEECCC
Confidence 55 666666543
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=81.10 E-value=6.5 Score=23.27 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=30.6
Q ss_pred cccCcCCccccCCCCCCCccEEEccccccc---ccccCCCCCCEEEcccC
Q 046299 10 RLNGTLTKASDSFPSFSFWTSLIILRKLAG---DIITNLSRLAHMDLSFD 56 (138)
Q Consensus 10 ~l~~~~p~~~~~l~~~~~L~~L~Ls~~l~~---~~~~~l~~L~~L~ls~N 56 (138)
.++.+-..+|.++ .+|+.+.+...++. ..|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c---~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGN---TVIREITVQPNIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTC---TTCCCEEECTTSSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCC---CCCcEEEcCCchheEcHHHHhccCCccEEEEcCC
Confidence 4455555667777 88888888663332 77888888888887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 138 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.84 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.79 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.78 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.78 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.77 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.75 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.74 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.66 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.65 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.63 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.61 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.6 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.58 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.58 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.56 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.55 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.55 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.53 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.44 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.42 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.37 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.3 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.23 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.06 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.97 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.95 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 98.88 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 98.88 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.82 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.69 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.26 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.23 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.15 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.68 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.54 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.03 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.88 E-value=7.2e-23 Score=147.74 Aligned_cols=134 Identities=16% Similarity=0.328 Sum_probs=98.6
Q ss_pred CcEEEccC-ccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGN-NRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~-N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
|++|+|++ |+++|.+|++|+++ ++|++|++++ ++.+ ..+..+.+|+++++++|.+.+.+|..+..+.+++++
T Consensus 78 L~~L~Ls~~N~l~g~iP~~i~~L---~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l 154 (313)
T d1ogqa_ 78 LNFLYIGGINNLVGPIPPAIAKL---TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGC---TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred ccccccccccccccccccccccc---cccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence 56777775 67777777777777 7777777777 7776 446666677777777777666677777777777788
Q ss_pred EecCCcCCCCCCCCCCCCCC---eEEec----------------------------------------------------
Q 046299 76 ILGSCKMGPGFPNPIPEMPH---DVLIS---------------------------------------------------- 100 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~---~L~ls---------------------------------------------------- 100 (138)
++++|.+++.+|..+..+.. .++++
T Consensus 155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 234 (313)
T d1ogqa_ 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888777777776555443 33332
Q ss_pred ------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecCCC
Q 046299 101 ------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 101 ------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
..++++++|++++|+++ .++|++|||++|+|+|.||.
T Consensus 235 ~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 286 (313)
T d1ogqa_ 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence 34678889999999887 47899999999999998885
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.1e-20 Score=132.26 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=106.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+++|+|++|+|++..+..|.++ ++|++|+|++ +++. +.++.+++|++|++++|+++. .+..+..+.+|++|+++
T Consensus 33 l~~L~Ls~N~i~~l~~~~f~~l---~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~ 108 (266)
T d1p9ag_ 33 TTILHLSENLLYTFSLATLMPY---TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS 108 (266)
T ss_dssp CCEEECTTSCCSEEEGGGGTTC---TTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred CCEEECcCCcCCCcCHHHhhcc---ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 5789999999988777889999 9999999999 9998 778899999999999999964 45567777889999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeecC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQY 135 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~i 135 (138)
+|.+....+..+..+.. +++++ ..+++++.+++++|+++ .++|++|||++|+|+. +
T Consensus 109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~-l 187 (266)
T d1p9ag_ 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 187 (266)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-C
T ss_pred ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc-c
Confidence 98887555555666665 67766 34667888888888887 3677888888888873 7
Q ss_pred CC
Q 046299 136 PR 137 (138)
Q Consensus 136 P~ 137 (138)
|+
T Consensus 188 p~ 189 (266)
T d1p9ag_ 188 PK 189 (266)
T ss_dssp CT
T ss_pred Ch
Confidence 64
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.79 E-value=9.7e-20 Score=131.11 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=98.3
Q ss_pred CcEEEccCccccC--cCCccccCCCCCCCccEEEccc--cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcc
Q 046299 1 MKDLFVGNNRLNG--TLTKASDSFPSFSFWTSLIILR--KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLN 73 (138)
Q Consensus 1 L~~L~Ls~N~l~~--~~p~~~~~l~~~~~L~~L~Ls~--~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~ 73 (138)
++.|+|++|.++| .+|++++++ ++|++|+|++ +++| ..|+++++|++|++++|++.+..+..+....+|+
T Consensus 52 v~~L~L~~~~l~g~~~lp~~l~~L---~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 52 VNNLDLSGLNLPKPYPIPSSLANL---PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGC---TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred EEEEECCCCCCCCCCCCChHHhcC---ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence 3679999999988 478999999 9999999985 7887 7899999999999999999998888888888999
Q ss_pred eEEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCc-eeEEEeeCCccc
Q 046299 74 TIILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQY-VFRVDIYFQQYV 117 (138)
Q Consensus 74 ~L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~-L~~L~ls~N~l~ 117 (138)
++++++|.+.+.+|.++..++. +++++ ..+.. ++.+++++|+++
T Consensus 129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~ 187 (313)
T d1ogqa_ 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence 9999999999999999999888 77776 23333 367777777765
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.78 E-value=2.1e-19 Score=121.66 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=59.7
Q ss_pred EEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 3 DLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 3 ~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
.++.++++++. +|..+ - +++++|+|++ ++++ ..|.++++|++|++++|.+....+..+....+|++|++
T Consensus 12 ~v~Cs~~~L~~-iP~~l--p---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L 85 (192)
T d1w8aa_ 12 TVDCTGRGLKE-IPRDI--P---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp EEECTTSCCSS-CCSCC--C---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred EEEEeCCCcCc-cCCCC--C---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence 45555555543 44332 1 3455556655 5543 44555555666666666555555555555555666666
Q ss_pred cCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------CCCCcEEEccCCeee
Q 046299 78 GSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFS 132 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~ 132 (138)
++|+++...|..|.++++ |++|+|++|+|+ .++|++++|++|.+.
T Consensus 86 s~N~l~~l~~~~F~~l~~----------L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 86 GENKIKEISNKMFLGLHQ----------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTT----------CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccccccccCHHHHhCCCc----------ccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 666655434444544443 555555555555 234555555555544
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.78 E-value=2e-18 Score=116.71 Aligned_cols=124 Identities=13% Similarity=0.140 Sum_probs=105.2
Q ss_pred CcEEEccCccccCcC-CccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceE
Q 046299 1 MKDLFVGNNRLNGTL-TKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTI 75 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~-p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L 75 (138)
+++|+|++|+|++.+ +..|..+ ++|++|++++ ++.. ..|..+++|++|++++|+++...+..|..+.+|++|
T Consensus 31 l~~L~Ls~N~i~~~~~~~~f~~l---~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L 107 (192)
T d1w8aa_ 31 TTELLLNDNELGRISSDGLFGRL---PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCEEEeCCCCCcccccccccCCC---ceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence 579999999998644 5677899 9999999999 9988 889999999999999999998888889999999999
Q ss_pred EecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc--------CCCCcEEEccCCeeeecCCC
Q 046299 76 ILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFSGQYPR 137 (138)
Q Consensus 76 ~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~g~iP~ 137 (138)
+|++|+|++..|.+|..+++ |+++++++|.+. ...++...+..|.++...|.
T Consensus 108 ~L~~N~l~~i~~~~f~~l~~----------L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~ 167 (192)
T d1w8aa_ 108 NLYDNQISCVMPGSFEHLNS----------LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTT----------CCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred ccCCccccccCHHHhcCCcc----------cccccccccccccccchHHHhhhhhhhcccCCCeEeCCCh
Confidence 99999999766777877665 999999999997 13355566777777765553
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.8e-18 Score=120.77 Aligned_cols=130 Identities=13% Similarity=0.038 Sum_probs=94.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----------------------------ccccCCCCCCEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----------------------------DIITNLSRLAHM 51 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----------------------------~~~~~l~~L~~L 51 (138)
+++|+|++|+|++..+.+|.++ ++|++|++++ ++.. ..|+++++|++|
T Consensus 34 ~~~L~Ls~N~i~~i~~~~f~~l---~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L 110 (284)
T d1ozna_ 34 SQRIFLHGNRISHVPAASFRAC---RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (284)
T ss_dssp CSEEECTTSCCCEECTTTTTTC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECcCCcCCCCCHHHhhcc---ccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence 4789999999987766778888 8899999888 7653 246677888888
Q ss_pred EcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc
Q 046299 52 DLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 52 ~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~ 117 (138)
++++|.+....+..+....+|+.+++++|++++..+..+..++. +|+++ .++++|+++++++|+++
T Consensus 111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~ 190 (284)
T d1ozna_ 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (284)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence 88888886666666666677888888888887544555666665 67766 44566777777777666
Q ss_pred ---------CCCCcEEEccCCeeee
Q 046299 118 ---------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 ---------~~~L~~L~Ls~N~l~g 133 (138)
.+++++||+++|.+++
T Consensus 191 ~i~~~~f~~l~~L~~L~l~~N~i~~ 215 (284)
T d1ozna_ 191 HVHPHAFRDLGRLMTLYLFANNLSA 215 (284)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccChhHhhhhhhccccccccccccc
Confidence 2566666666666665
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.4e-17 Score=117.55 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=103.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|+|++|+|+. +| .++.+ ++|++|++++ ++++ ..+.++++|++|++++|.+....+..+..+.++++|++
T Consensus 57 L~~L~L~~N~l~~-l~-~~~~l---~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l 131 (266)
T d1p9ag_ 57 LTQLNLDRAELTK-LQ-VDGTL---PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (266)
T ss_dssp CCEEECTTSCCCE-EE-CCSCC---TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred ccccccccccccc-cc-ccccc---ccccccccccccccccccccccccccccccccccccceeeccccccccccccccc
Confidence 6789999999975 44 35778 8999999999 8888 77888899999999999887766677777778888888
Q ss_pred cCCcCCCCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 78 GSCKMGPGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 78 ~~n~l~~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
++|.++...+..+..++. .++++ ..+++|++|+|++|+|+ .++|+.|+|++|++.
T Consensus 132 ~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence 888888544555566666 77877 45788999999999998 478999999999875
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.7e-17 Score=116.82 Aligned_cols=124 Identities=10% Similarity=0.075 Sum_probs=73.6
Q ss_pred CccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCC
Q 046299 8 NNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMG 83 (138)
Q Consensus 8 ~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~ 83 (138)
.|.++...|.+|.++ ++|++|++++ .+.. ..+...++|+.+++++|++++..+..|....+|++|++++|+++
T Consensus 90 ~~~~~~l~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~ 166 (284)
T d1ozna_ 90 NAQLRSVDPATFHGL---GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (284)
T ss_dssp CTTCCCCCTTTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccccccccchhhccc---ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc
Confidence 344444445555555 5555555555 4443 34445555555555555554443444444445555555555555
Q ss_pred CCCCCCCCCCCC--eEEec------------cCCCceeEEEeeCCccc---------CCCCcEEEccCCeeeec
Q 046299 84 PGFPNPIPEMPH--DVLIS------------SFQQYVFRVDIYFQQYV---------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 84 ~~~p~~~~~l~~--~L~ls------------~~l~~L~~L~ls~N~l~---------~~~L~~L~Ls~N~l~g~ 134 (138)
+..|..+..+++ +++++ ..+++|++|++++|+++ ..+|++|++++|++.+.
T Consensus 167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~ 240 (284)
T d1ozna_ 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (284)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence 444444444444 44444 34456999999999998 47899999999998763
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.8e-17 Score=108.59 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=88.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+++|+|++|+|+. +|..+..+ ++|++|++++ +++. +.|..+++|++|++++|+++...+..+..+.+|++|+++
T Consensus 20 lr~L~L~~n~I~~-i~~~~~~l---~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~ 95 (162)
T d1a9na_ 20 DRELDLRGYKIPV-IENLGATL---DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 95 (162)
T ss_dssp CEEEECTTSCCCS-CCCGGGGT---TCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CcEEECCCCCCCc-cCcccccc---ccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence 4789999999976 56666788 9999999999 9998 889999999999999999976555445567789999999
Q ss_pred CCcCCCCCCC--CCCCCCCeEEeccCCCceeEEEeeCCccc------------CCCCcEEEc
Q 046299 79 SCKMGPGFPN--PIPEMPHDVLISSFQQYVFRVDIYFQQYV------------SQSWTIIDL 126 (138)
Q Consensus 79 ~n~l~~~~p~--~~~~l~~~L~ls~~l~~L~~L~ls~N~l~------------~~~L~~L~L 126 (138)
+|+++ .++. .+.. +++|+++++++|.++ .++|++||-
T Consensus 96 ~N~i~-~~~~l~~l~~----------l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 96 NNSLV-ELGDLDPLAS----------LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp SCCCC-CGGGGGGGGG----------CTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ccccc-cccccccccc----------ccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 99997 4443 3444 445999999999887 467888763
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=2.7e-16 Score=107.46 Aligned_cols=126 Identities=14% Similarity=0.137 Sum_probs=102.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|.++.. + .+..+ ++|++|++++ ++++ ..++.+++|++|++++|+++. ++ .+..+.+|+.|+++
T Consensus 48 L~~L~l~~~~i~~l-~-~l~~l---~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~ 120 (210)
T d1h6ta2 48 IDQIIANNSDIKSV-Q-GIQYL---PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (210)
T ss_dssp CCEEECTTSCCCCC-T-TGGGC---TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred ccEEECcCCCCCCc-h-hHhhC---CCCCEEeCCCccccCccccccCccccccccccccccc-cc-cccccccccccccc
Confidence 57899999999763 3 37778 9999999999 9999 778899999999999999964 44 46677889999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|.+. .++ .+..++. .++++ ..+++|+++++++|+++ .++|+.|++++|+++. +|
T Consensus 121 ~~~~~-~~~-~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~-l~ 194 (210)
T d1h6ta2 121 HNGIS-DIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR 194 (210)
T ss_dssp TSCCC-CCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG
T ss_pred ccccc-ccc-cccccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECCCCCCCC-Ch
Confidence 99986 443 4555555 66665 56789999999999998 4789999999999986 55
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=4.2e-16 Score=105.64 Aligned_cols=126 Identities=13% Similarity=0.155 Sum_probs=95.7
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
+++|++++|.++. + +.+..+ ++|++|++++ ++++ ..++++++|++|++++|.+.. ++ .+..+.+|++++++
T Consensus 42 l~~L~l~~~~i~~-l-~~l~~l---~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~ 114 (199)
T d2omxa2 42 VTTLQADRLGIKS-I-DGVEYL---NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLF 114 (199)
T ss_dssp CCEEECTTSCCCC-C-TTGGGC---TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECC
T ss_pred CCEEECCCCCCCC-c-cccccC---CCcCcCccccccccCcccccCCccccccccccccccc-cc-cccccccccccccc
Confidence 4678888888865 3 346677 8888888888 8888 668888888888888887753 22 35566778888888
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeeecCC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSGQYP 136 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g~iP 136 (138)
+|.+.. + ..+..+++ .++++ ..++++++|++++|+++ .++|++|++++|++++ +|
T Consensus 115 ~~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~-i~ 188 (199)
T d2omxa2 115 NNQITD-I-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-IS 188 (199)
T ss_dssp SSCCCC-C-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG
T ss_pred cccccc-c-cccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCCC-Cc
Confidence 887763 2 23555665 67766 55678999999999988 5899999999999987 54
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=2e-16 Score=100.07 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=80.8
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
++|++++|+++. ++ .+..+ ++|++|++++ ++++ ..|+.+++|++|++++|.++. +| .+..+.+|++++++
T Consensus 1 R~L~Ls~n~l~~-l~-~l~~l---~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~ 73 (124)
T d1dcea3 1 RVLHLAHKDLTV-LC-HLEQL---LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 73 (124)
T ss_dssp SEEECTTSCCSS-CC-CGGGG---TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CEEEcCCCCCCC-Cc-ccccC---CCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cC-ccccccccCeEECC
Confidence 579999999975 44 48888 9999999999 9998 678999999999999999974 44 47788899999999
Q ss_pred CCcCCCCCCC--CCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 79 SCKMGPGFPN--PIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 79 ~n~l~~~~p~--~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+|+++ .+|. .+..+ ++|+++++++|+++
T Consensus 74 ~N~i~-~~~~~~~l~~~----------~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 74 NNRLQ-QSAAIQPLVSC----------PRLVLLNLQGNSLC 103 (124)
T ss_dssp SSCCC-SSSTTGGGGGC----------TTCCEEECTTSGGG
T ss_pred CCccC-CCCCchhhcCC----------CCCCEEECCCCcCC
Confidence 99998 4443 34444 45899999999887
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=3.9e-16 Score=98.75 Aligned_cols=92 Identities=12% Similarity=0.162 Sum_probs=77.9
Q ss_pred cEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCce
Q 046299 29 TSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYV 106 (138)
Q Consensus 29 ~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L 106 (138)
++|++++ +++. +.+..+++|++|++++|+++ .+|+.+..+.+|++|++++|+++ .+|. +..+++ |
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~~l~~----------L 67 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPR----------L 67 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-GTTCSS----------C
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc-cccccc----------c
Confidence 5789999 9998 77899999999999999996 56777888889999999999998 5553 655544 9
Q ss_pred eEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 107 FRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 107 ~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
+++++++|+|+ .++|+++++++|++++
T Consensus 68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 99999999997 3689999999999875
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.63 E-value=2.9e-15 Score=106.91 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=100.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
|+++++++|.++. +|.. .. ++|+.|++++ ..++ ..|.+++.+++|++++|.+++..+..+..+.+|++|+
T Consensus 152 L~~l~l~~n~l~~-l~~~--~~---~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~ 225 (305)
T d1xkua_ 152 LSYIRIADTNITT-IPQG--LP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225 (305)
T ss_dssp CCEEECCSSCCCS-CCSS--CC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred cCccccccCCccc-cCcc--cC---CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence 5678899998865 5543 35 8899999999 7776 7789999999999999999888888888888999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc---------------CCCCcEEEccCCeee-ecCC
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV---------------SQSWTIIDLGINKFS-GQYP 136 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~---------------~~~L~~L~Ls~N~l~-g~iP 136 (138)
+++|+|+ .+|.++..+++ |++|++++|+|+ ..+++.|++++|+++ +.+|
T Consensus 226 L~~N~L~-~lp~~l~~l~~----------L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~ 290 (305)
T d1xkua_ 226 LNNNKLV-KVPGGLADHKY----------IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 290 (305)
T ss_dssp CCSSCCS-SCCTTTTTCSS----------CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred ccccccc-ccccccccccC----------CCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCC
Confidence 9999998 78888887665 999999999987 367899999999985 3444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.61 E-value=3.7e-15 Score=101.73 Aligned_cols=119 Identities=13% Similarity=0.198 Sum_probs=94.6
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|+|++. + .++.+ ++|++|++++ ++++ ..+..+++|+.|++++|.+.. + ..+..+.++++++++
T Consensus 70 L~~L~L~~n~i~~l-~-~~~~l---~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~ 142 (210)
T d1h6ta2 70 VTKLFLNGNKLTDI-K-PLANL---KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLG 142 (210)
T ss_dssp CCEEECCSSCCCCC-G-GGTTC---TTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECC
T ss_pred CCEEeCCCccccCc-c-ccccC---ccccccccccccccccccccccccccccccccccccc-c-ccccccccccccccc
Confidence 68999999999874 3 36788 9999999999 9999 889999999999999998752 2 345566678888888
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccC
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGI 128 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~ 128 (138)
+|.+++ +..+..+++ +++++ +.+++|+.|++++|+|+ .++|++|+|++
T Consensus 143 ~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 143 NNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp SSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred cccccc--cccccccccccccccccccccccccccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence 888763 233444555 66666 56788999999999998 57899999874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.60 E-value=7.5e-15 Score=99.33 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=90.0
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++++|++++.. + ++++ ++|++|++++ .+.. ..+++++.|+.+++++|.+... ..+..+.+|++++++
T Consensus 64 L~~L~Ls~N~l~~~~-~-l~~l---~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~ 136 (199)
T d2omxa2 64 LTQINFSNNQLTDIT-P-LKNL---TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELS 136 (199)
T ss_dssp CCEEECCSSCCCCCG-G-GTTC---TTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECC
T ss_pred cCcCccccccccCcc-c-ccCC---cccccccccccccccccccccccccccccccccccccc--cccchhhhhHHhhhh
Confidence 689999999998743 3 8899 9999999999 8888 7899999999999999988643 245667789999999
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~ 117 (138)
+|++. .+| .+..+++ .++++ +.+++|++|++++|+++
T Consensus 137 ~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 137 SNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS 185 (199)
T ss_dssp SSCCC-CCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred hhhhc-ccc-cccccccccccccccccccCCccccCCCCCCEEECCCCCCC
Confidence 99987 444 4666666 78777 67889999999999998
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.58 E-value=1.3e-14 Score=103.52 Aligned_cols=128 Identities=14% Similarity=0.086 Sum_probs=76.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+++|++++|+|+...+.+|.++ ++|++|++++ .+.. ..|.++++|++|++++|+++ .+|..+. ..++.|+
T Consensus 33 l~~L~Ls~N~i~~l~~~~f~~l---~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~--~~l~~L~ 106 (305)
T d1xkua_ 33 TALLDLQNNKITEIKDGDFKNL---KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 106 (305)
T ss_dssp CCEEECCSSCCCCBCTTTTTTC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCEEECcCCcCCCcChhHhhcc---ccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchh--hhhhhhh
Confidence 4677777777766555567777 7777777777 6666 45777777777777777775 3444332 2566777
Q ss_pred ecCCcCCCCCCCCCCCCCC--eEEec--------------cCCCceeEEEeeCCccc------CCCCcEEEccCCeeeec
Q 046299 77 LGSCKMGPGFPNPIPEMPH--DVLIS--------------SFQQYVFRVDIYFQQYV------SQSWTIIDLGINKFSGQ 134 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~--~L~ls--------------~~l~~L~~L~ls~N~l~------~~~L~~L~Ls~N~l~g~ 134 (138)
+.+|.+.+..+..+..... .++.. ..+++|+++++++|+++ +++++.|++++|..++.
T Consensus 107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~ 186 (305)
T d1xkua_ 107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 186 (305)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCC
Confidence 7777666332222222222 33332 34456667777777665 35556666666655543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.58 E-value=1.8e-14 Score=99.02 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=91.8
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|++|++.+|.|+. ++ .+..+ ++|++|++++ ++++ ..+..+++++++++++|.++ .++ .+..+.+|+++.++
T Consensus 43 L~~L~l~~~~i~~-l~-~l~~l---~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~ 115 (227)
T d1h6ua2 43 ITTLSAFGTGVTT-IE-GVQYL---NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLT 115 (227)
T ss_dssp CCEEECTTSCCCC-CT-TGGGC---TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECT
T ss_pred cCEEECCCCCCCc-ch-hHhcC---CCCcEeecCCceeecccccccccccccccccccccc-ccc-cccccccccccccc
Confidence 5788899998875 43 57788 8999999998 8888 77888888999998888875 232 45566778888888
Q ss_pred CCcCCCCCCC--------------------CCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CC
Q 046299 79 SCKMGPGFPN--------------------PIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQ 119 (138)
Q Consensus 79 ~n~l~~~~p~--------------------~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~ 119 (138)
+|...+..+- .+..+++ .++++ +.+++|+.|++++|+++ .+
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~ 195 (227)
T d1h6ua2 116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLP 195 (227)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred cccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChhhcCCC
Confidence 7776532111 0111111 34433 56788889999998887 47
Q ss_pred CCcEEEccCCeeeecCC
Q 046299 120 SWTIIDLGINKFSGQYP 136 (138)
Q Consensus 120 ~L~~L~Ls~N~l~g~iP 136 (138)
+|++|++++|++++ +|
T Consensus 196 ~L~~L~Ls~N~lt~-i~ 211 (227)
T d1h6ua2 196 NLIEVHLKNNQISD-VS 211 (227)
T ss_dssp TCCEEECTTSCCCB-CG
T ss_pred CCCEEECcCCcCCC-Cc
Confidence 88999999998886 44
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.56 E-value=1.8e-14 Score=104.82 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=68.3
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecC
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGS 79 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~ 79 (138)
++|++++|+++. + +.+..+ ++|+.+++++ .+++ ..++.+++|+++++++|.+++.. .+.....++.+.+..
T Consensus 222 ~~L~l~~n~l~~-~-~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~ 294 (384)
T d2omza2 222 DELSLNGNQLKD-I-GTLASL---TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNE 294 (384)
T ss_dssp CEEECCSSCCCC-C-GGGGGC---TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCS
T ss_pred CEEECCCCCCCC-c-chhhcc---cccchhccccCccCCCCcccccccCCEeeccCcccCCCC--ccccccccccccccc
Confidence 445555555543 1 234445 5555555555 5555 44555555555555555554221 122233344444444
Q ss_pred CcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 80 CKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 80 n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
|++++ + ..+..+.. .++++ ..+++|++|++++|+|+ .++|++|++++|++++
T Consensus 295 n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~ 365 (384)
T d2omza2 295 NQLED-I-SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD 365 (384)
T ss_dssp SCCSC-C-GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCB
T ss_pred ccccc-c-cccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCC
Confidence 44432 1 12233333 55555 45677888888888887 4788889999998887
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.7e-15 Score=97.30 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=83.4
Q ss_pred cccCCCCCCCccEEEccc-cccc--ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCC-CCCC
Q 046299 18 ASDSFPSFSFWTSLIILR-KLAG--DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNP-IPEM 93 (138)
Q Consensus 18 ~~~~l~~~~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l 93 (138)
.+.+. .++++|+|++ +++. ..+..+++|+.|++++|.++. ++ .+..+.+|++|++++|+++ .+|+. +..+
T Consensus 13 ~~~n~---~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l 86 (162)
T d1a9na_ 13 QYTNA---VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 86 (162)
T ss_dssp EEECT---TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred hccCc---CcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhccccccc-CCCccccccc
Confidence 46677 8999999999 9998 556789999999999999974 43 5777889999999999998 45544 3344
Q ss_pred CCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 94 PHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 94 ~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
++|++|++++|+|+ .++|+++++++|+++.
T Consensus 87 ----------~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~ 126 (162)
T d1a9na_ 87 ----------PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126 (162)
T ss_dssp ----------TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred ----------cccccceeccccccccccccccccccccchhhcCCCcccc
Confidence 45999999999987 4789999999999875
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.2e-14 Score=96.41 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=67.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc----ccccCCCCCCEEEccc-CccceeCCCCCccccCcce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG----DIITNLSRLAHMDLSF-DLRTFNFSSGWIPPFQLNT 74 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~-N~l~~~~~~~~~~~~~L~~ 74 (138)
+++|++++|+|+...+..|.++ ++|++|++++ .+.. ..|.++++++++++.. |++....+..+..+.+|++
T Consensus 31 l~~L~Ls~n~i~~l~~~~f~~l---~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~ 107 (242)
T d1xwdc1 31 AIELRFVLTKLRVIQKGAFSGF---GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 107 (242)
T ss_dssp CSEEEEESCCCCEECTTTTTTC---TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred CCEEECcCCcCCccChhHhhcc---chhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence 5789999999987666678899 9999999999 7765 5688899999998764 6777777777788889999
Q ss_pred EEecCCcCC
Q 046299 75 IILGSCKMG 83 (138)
Q Consensus 75 L~l~~n~l~ 83 (138)
+++++|+++
T Consensus 108 l~l~~~~l~ 116 (242)
T d1xwdc1 108 LLISNTGIK 116 (242)
T ss_dssp EEEESCCCC
T ss_pred cccchhhhc
Confidence 999999987
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.7e-14 Score=92.26 Aligned_cols=101 Identities=10% Similarity=-0.039 Sum_probs=85.7
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc--cccc---ccccCCCCCCEEEcccCccceeCCCCCccccCcceEE
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR--KLAG---DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTII 76 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~--~l~~---~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~ 76 (138)
+.++.+++.+.. .|..+..+ ++|++|++++ .++. ..|.++++|+.|++++|+|+...+.+|..+.+|++|+
T Consensus 11 ~~l~c~~~~~~~-~p~~l~~l---~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 11 SGLRCTRDGALD-SLHHLPGA---ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SCEECCSSCCCT-TTTTSCSC---SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CeEEecCCCCcc-CcccccCc---cccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 457788888865 67888888 9999999976 5887 6799999999999999999988888899999999999
Q ss_pred ecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 77 LGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 77 l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
+++|+|+ .+|....... +|+.|++++|.+.
T Consensus 87 Ls~N~l~-~l~~~~~~~~----------~l~~L~L~~Np~~ 116 (156)
T d2ifga3 87 LSFNALE-SLSWKTVQGL----------SLQELVLSGNPLH 116 (156)
T ss_dssp CCSSCCS-CCCSTTTCSC----------CCCEEECCSSCCC
T ss_pred ccCCCCc-ccChhhhccc----------cccccccCCCccc
Confidence 9999998 6776654433 3899999999986
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=4.8e-14 Score=102.50 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=81.9
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEec
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILG 78 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~ 78 (138)
|+.|++++|.+++.. .++.+ ++|+.|++++ ++++ ..+..++.++.++++.|.+++. ..+..+.++++|+++
T Consensus 243 L~~L~l~~n~l~~~~--~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls 315 (384)
T d2omza2 243 LTDLDLANNQISNLA--PLSGL---TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLY 315 (384)
T ss_dssp CSEEECCSSCCCCCG--GGTTC---TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECC
T ss_pred cchhccccCccCCCC--ccccc---ccCCEeeccCcccCCCCccccccccccccccccccccc--cccchhcccCeEECC
Confidence 567888888887643 36777 8888888888 7777 5566666666666666665431 223444456666666
Q ss_pred CCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CCCCcEEEccCCe
Q 046299 79 SCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQSWTIIDLGINK 130 (138)
Q Consensus 79 ~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~ 130 (138)
+|++++. ++ +..+++ +|+++ +.+++|++|++++|+|+ .++|++|++++|.
T Consensus 316 ~n~l~~l-~~-l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 316 FNNISDI-SP-VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 384 (384)
T ss_dssp SSCCSCC-GG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCEE
T ss_pred CCCCCCC-cc-cccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCCc
Confidence 6666532 21 344444 55555 44667999999999998 4799999999984
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=1.6e-13 Score=94.21 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=94.4
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCC---------------
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFS--------------- 63 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~--------------- 63 (138)
|++|++++|++++..| +..+ ++++++++++ .++. ..+..+++|+.++++++...+..+
T Consensus 65 L~~L~ls~n~i~~~~~--l~~l---~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (227)
T d1h6ua2 65 LIGLELKDNQITDLAP--LKNL---TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139 (227)
T ss_dssp CCEEECCSSCCCCCGG--GTTC---CSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CcEeecCCceeecccc--cccc---ccccccccccccccccccccccccccccccccccccccchhccccchhhhhchhh
Confidence 6889999999987433 7888 9999999998 8888 778889999999998887642211
Q ss_pred -----CCCccccCcceEEecCCcCCCCCCCCCCCCCC--eEEec----------cCCCceeEEEeeCCccc-------CC
Q 046299 64 -----SGWIPPFQLNTIILGSCKMGPGFPNPIPEMPH--DVLIS----------SFQQYVFRVDIYFQQYV-------SQ 119 (138)
Q Consensus 64 -----~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~--~L~ls----------~~l~~L~~L~ls~N~l~-------~~ 119 (138)
..+....+|++|++++|.+++ .+ .+..+++ .++++ +.+++|++|++++|+++ .+
T Consensus 140 ~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~ 217 (227)
T d1h6ua2 140 QITNISPLAGLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTS 217 (227)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCT
T ss_pred hhchhhhhcccccccccccccccccc-ch-hhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCCcccccCC
Confidence 123344579999999999873 32 3667777 88887 56789999999999998 57
Q ss_pred CCcEEEccC
Q 046299 120 SWTIIDLGI 128 (138)
Q Consensus 120 ~L~~L~Ls~ 128 (138)
+|++|++++
T Consensus 218 ~L~~L~lsn 226 (227)
T d1h6ua2 218 NLFIVTLTN 226 (227)
T ss_dssp TCCEEEEEE
T ss_pred CCCEEEeeC
Confidence 899999873
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.9e-13 Score=88.39 Aligned_cols=97 Identities=11% Similarity=0.019 Sum_probs=82.3
Q ss_pred CCccEEEccc-cccc--ccccCCCCCCEEEcccC-ccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEecc
Q 046299 26 SFWTSLIILR-KLAG--DIITNLSRLAHMDLSFD-LRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISS 101 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~--~~~~~l~~L~~L~ls~N-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~ 101 (138)
...+.++.++ .+.. ..+.++++|++|++++| .++...+..|..+.+|++|++++|+|+...|..|..+++
T Consensus 8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~------ 81 (156)
T d2ifga3 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR------ 81 (156)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC------
T ss_pred CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccc------
Confidence 5677888888 7777 77889999999999876 487766778888999999999999999666677777655
Q ss_pred CCCceeEEEeeCCccc--------CCCCcEEEccCCeee
Q 046299 102 FQQYVFRVDIYFQQYV--------SQSWTIIDLGINKFS 132 (138)
Q Consensus 102 ~l~~L~~L~ls~N~l~--------~~~L~~L~Ls~N~l~ 132 (138)
|++|+|++|+|+ ..+++.|+|++|++.
T Consensus 82 ----L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 82 ----LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp ----CCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ----ccceeccCCCCcccChhhhccccccccccCCCccc
Confidence 999999999999 357899999999985
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.42 E-value=6e-16 Score=105.14 Aligned_cols=103 Identities=8% Similarity=0.052 Sum_probs=76.6
Q ss_pred CCccccCCCCCCCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCC
Q 046299 15 LTKASDSFPSFSFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPE 92 (138)
Q Consensus 15 ~p~~~~~l~~~~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 92 (138)
+|.++..+ ++|++|++++ +++. +.+..+++|++|++++|.++ .+|.......+|++|++++|+++ .++. +..
T Consensus 40 l~~sl~~L---~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~~-~~~ 113 (198)
T d1m9la_ 40 MDATLSTL---KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEK 113 (198)
T ss_dssp CHHHHHHT---TTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHHH-HHH
T ss_pred hhhHHhcc---cccceeECcccCCCCcccccCCccccChhhcccccc-ccccccccccccccccccccccc-cccc-ccc
Confidence 45667788 8999999999 8888 77888999999999999885 44543334457899999999987 3332 333
Q ss_pred CCCeEEeccCCCceeEEEeeCCccc----------CCCCcEEEccCCeeee
Q 046299 93 MPHDVLISSFQQYVFRVDIYFQQYV----------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 93 l~~~L~ls~~l~~L~~L~ls~N~l~----------~~~L~~L~Ls~N~l~g 133 (138)
+++|++|++++|+|+ .++|+.|++++|+++.
T Consensus 114 ----------l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 114 ----------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp ----------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred ----------cccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence 345888888888776 4678888888887754
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.37 E-value=9.9e-12 Score=88.77 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=39.1
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-c-c----------------ccCC-CCCCEEEcccCccce
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-D-I----------------ITNL-SRLAHMDLSFDLRTF 60 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~-~----------------~~~l-~~L~~L~ls~N~l~~ 60 (138)
+++|||++|.++. +|+. . ++|++|++++ +++. + . +..+ +.|++|++++|.++
T Consensus 40 l~~LdLs~~~L~~-lp~~---~---~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~- 111 (353)
T d1jl5a_ 40 AHELELNNLGLSS-LPEL---P---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE- 111 (353)
T ss_dssp CSEEECTTSCCSC-CCSC---C---TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-
T ss_pred CCEEEeCCCCCCC-CCCC---C---CCCCEEECCCCCCcccccchhhhhhhhhhhcccchhhhhccccccccccccccc-
Confidence 3566666666653 4532 3 4455555555 5554 1 1 1122 24666666666664
Q ss_pred eCCCCCccccCcceEEecCCcCC
Q 046299 61 NFSSGWIPPFQLNTIILGSCKMG 83 (138)
Q Consensus 61 ~~~~~~~~~~~L~~L~l~~n~l~ 83 (138)
.+|. +..+.+|+++++++|.+.
T Consensus 112 ~lp~-~~~l~~L~~L~l~~~~~~ 133 (353)
T d1jl5a_ 112 KLPE-LQNSSFLKIIDVDNNSLK 133 (353)
T ss_dssp SCCC-CTTCTTCCEEECCSSCCS
T ss_pred cccc-hhhhccceeecccccccc
Confidence 3332 344556666666666554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.30 E-value=1.5e-14 Score=98.05 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=79.5
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc-c-cccCCCCCCEEEcccCccceeCCCCCccccCcceEEe
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG-D-IITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIIL 77 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~-~-~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l 77 (138)
|++|+|++|+|+. ++ .+..+ ++|++|++++ .++. + .+..+++|++|++++|+++. ++ .+..+.+|++|++
T Consensus 50 L~~L~Ls~n~I~~-i~-~l~~l---~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L 122 (198)
T d1m9la_ 50 CKHLALSTNNIEK-IS-SLSGM---ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp CCEEECSEEEESC-CC-CHHHH---TTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEE
T ss_pred cceeECcccCCCC-cc-cccCC---ccccChhhcccccccccccccccccccccccccccccc-cc-ccccccccccccc
Confidence 6899999999975 44 58889 9999999999 9988 3 34556789999999999974 32 3566778999999
Q ss_pred cCCcCCCCCC--CCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 78 GSCKMGPGFP--NPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 78 ~~n~l~~~~p--~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
++|+++ .++ ..+..++ +|++|++++|+++
T Consensus 123 ~~N~i~-~~~~~~~l~~l~----------~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 123 SNNKIT-NWGEIDKLAALD----------KLEDLLLAGNPLY 153 (198)
T ss_dssp SEEECC-CHHHHHHHTTTT----------TCSEEEECSSHHH
T ss_pred ccchhc-cccccccccCCC----------ccceeecCCCccc
Confidence 999997 444 2455554 4999999999886
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=7.4e-11 Score=80.93 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=72.2
Q ss_pred cEEEccCccccCcCCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEcccCccceeCC-CCCccccCcceEE
Q 046299 2 KDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSFDLRTFNFS-SGWIPPFQLNTII 76 (138)
Q Consensus 2 ~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~~~~L~~L~ 76 (138)
+.++.++..++ .+|+.+ . +++++|++++ +++. ..|.++++|++|++++|.+...++ ..|..+.+++++.
T Consensus 11 ~~i~c~~~~l~-~iP~~l--~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~ 84 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDL--P---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 84 (242)
T ss_dssp SEEEEESCSCS-SCCSCS--C---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred CEEEEeCCCCC-CcCCCC--C---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence 46777888886 467644 2 5789999999 9988 579999999999999999875544 4567778899998
Q ss_pred ec-CCcCCCCCCCCCCCCCC--eEEec
Q 046299 77 LG-SCKMGPGFPNPIPEMPH--DVLIS 100 (138)
Q Consensus 77 l~-~n~l~~~~p~~~~~l~~--~L~ls 100 (138)
+. .|.+....+..+..+++ +++++
T Consensus 85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~ 111 (242)
T d1xwdc1 85 IEKANNLLYINPEAFQNLPNLQYLLIS 111 (242)
T ss_dssp EECCTTCCEECTTSEECCTTCCEEEEE
T ss_pred ccccccccccccccccccccccccccc
Confidence 76 46787667777777777 66665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.06 E-value=1.2e-11 Score=89.32 Aligned_cols=121 Identities=14% Similarity=0.194 Sum_probs=72.0
Q ss_pred cEEEccCccccCc----CCccccCCCCCCCccEEEccc-cccc--------ccccCCCCCCEEEcccCcccee----CCC
Q 046299 2 KDLFVGNNRLNGT----LTKASDSFPSFSFWTSLIILR-KLAG--------DIITNLSRLAHMDLSFDLRTFN----FSS 64 (138)
Q Consensus 2 ~~L~Ls~N~l~~~----~p~~~~~l~~~~~L~~L~Ls~-~l~~--------~~~~~l~~L~~L~ls~N~l~~~----~~~ 64 (138)
+.+++++|+++.. +...+... +.|+.|++++ +++. ..+..+++|+.|++++|.++.. +..
T Consensus 161 ~~l~l~~n~i~~~~~~~l~~~l~~~---~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~ 237 (344)
T d2ca6a1 161 RSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237 (344)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHC---TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred ceeecccccccccccccccchhhhh---hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence 4555555555321 12223344 6677777776 6654 3355666777777777766421 222
Q ss_pred CCccccCcceEEecCCcCCCCCCCC----CCCCCCeEEeccCCCceeEEEeeCCccc--------------CCCCcEEEc
Q 046299 65 GWIPPFQLNTIILGSCKMGPGFPNP----IPEMPHDVLISSFQQYVFRVDIYFQQYV--------------SQSWTIIDL 126 (138)
Q Consensus 65 ~~~~~~~L~~L~l~~n~l~~~~p~~----~~~l~~~L~ls~~l~~L~~L~ls~N~l~--------------~~~L~~L~L 126 (138)
.+....+|++|++++|.+++.-... +... ....|++|++++|+|+ .+.|+.|++
T Consensus 238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~--------~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l 309 (344)
T d2ca6a1 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL--------ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309 (344)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC--------SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred cccccccchhhhhhcCccCchhhHHHHHHhhhc--------cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEEC
Confidence 3344556777777777765321111 1111 2256999999999997 368999999
Q ss_pred cCCeeee
Q 046299 127 GINKFSG 133 (138)
Q Consensus 127 s~N~l~g 133 (138)
++|+|..
T Consensus 310 ~~N~~~~ 316 (344)
T d2ca6a1 310 NGNRFSE 316 (344)
T ss_dssp TTSBSCT
T ss_pred CCCcCCC
Confidence 9999864
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.97 E-value=8.7e-11 Score=84.66 Aligned_cols=65 Identities=8% Similarity=-0.023 Sum_probs=45.5
Q ss_pred ccCcceEEecCCcCCCC-----CCCCCCCCCC--eEEec----------------cCCCceeEEEeeCCccc--------
Q 046299 69 PFQLNTIILGSCKMGPG-----FPNPIPEMPH--DVLIS----------------SFQQYVFRVDIYFQQYV-------- 117 (138)
Q Consensus 69 ~~~L~~L~l~~n~l~~~-----~p~~~~~l~~--~L~ls----------------~~l~~L~~L~ls~N~l~-------- 117 (138)
...|++|++++|+++.. +...+...+. .|+++ ..+++|++|++++|+|+
T Consensus 185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~ 264 (344)
T d2ca6a1 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 264 (344)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence 34688888888887631 2233444444 67776 45678899999999887
Q ss_pred -------CCCCcEEEccCCeeee
Q 046299 118 -------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 118 -------~~~L~~L~Ls~N~l~g 133 (138)
...+++||+++|+++.
T Consensus 265 ~~l~~~~~~~L~~L~ls~N~i~~ 287 (344)
T d2ca6a1 265 DAFSKLENIGLQTLRLQYNEIEL 287 (344)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHhhhccCCCCCEEECCCCcCCh
Confidence 2568899999998763
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.95 E-value=3.4e-09 Score=75.24 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=63.5
Q ss_pred CCccEEEccc-cccc-ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCC
Q 046299 26 SFWTSLIILR-KLAG-DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQ 103 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l 103 (138)
.++++|||++ .++. +. ..++|++|++++|+|+ .+|..+ .+|+.|++++|+++ .++....
T Consensus 38 ~~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~lp~------------ 98 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDLPP------------ 98 (353)
T ss_dssp HTCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSCCT------------
T ss_pred cCCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhhcc------------
Confidence 3688999999 9988 43 3578999999999997 666543 47999999999987 5554221
Q ss_pred CceeEEEeeCCccc-------CCCCcEEEccCCeeee
Q 046299 104 QYVFRVDIYFQQYV-------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 104 ~~L~~L~ls~N~l~-------~~~L~~L~Ls~N~l~g 133 (138)
.|++|++++|+++ .++|+.+++++|.+++
T Consensus 99 -~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~ 134 (353)
T d1jl5a_ 99 -LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 134 (353)
T ss_dssp -TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC
T ss_pred -ccccccccccccccccchhhhccceeeccccccccc
Confidence 3666777777666 3566677776666654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.1e-10 Score=82.58 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=26.3
Q ss_pred CcEEEccCccccCc-CCccccCCCCCCCccEEEccc-cccc---ccccCCCCCCEEEccc
Q 046299 1 MKDLFVGNNRLNGT-LTKASDSFPSFSFWTSLIILR-KLAG---DIITNLSRLAHMDLSF 55 (138)
Q Consensus 1 L~~L~Ls~N~l~~~-~p~~~~~l~~~~~L~~L~Ls~-~l~~---~~~~~l~~L~~L~ls~ 55 (138)
|++||++++.+++. ++..+..+ ++|++|++++ .+++ ..++.+++|++|++++
T Consensus 48 L~~LdLs~~~i~~~~l~~l~~~c---~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~ 104 (284)
T d2astb2 48 VQHMDLSNSVIEVSTLHGILSQC---SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104 (284)
T ss_dssp CCEEECTTCEECHHHHHHHHTTB---CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred CCEEECCCCccCHHHHHHHHHhC---CCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence 35556665555432 22233444 5555555555 5544 4445555555555555
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=6.7e-11 Score=83.62 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=36.2
Q ss_pred CcEEEccCccccCcCCccccCCCCCCCccEEEccc--cccc----ccccCCCCCCEEEcccC
Q 046299 1 MKDLFVGNNRLNGTLTKASDSFPSFSFWTSLIILR--KLAG----DIITNLSRLAHMDLSFD 56 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~p~~~~~l~~~~~L~~L~Ls~--~l~~----~~~~~l~~L~~L~ls~N 56 (138)
|++|+++++.+++..+..++.+ ++|++|++++ .++. ..+.++++|++|+++++
T Consensus 73 L~~L~L~~~~l~~~~~~~l~~~---~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c 131 (284)
T d2astb2 73 LQNLSLEGLRLSDPIVNTLAKN---SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131 (284)
T ss_dssp CSEEECTTCBCCHHHHHHHTTC---TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred cccccccccCCCcHHHHHHhcC---CCCcCccccccccccccccchhhHHHHhccccccccc
Confidence 5677777777766666667777 7777777776 5554 22345777777777764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.3e-10 Score=85.16 Aligned_cols=104 Identities=10% Similarity=0.102 Sum_probs=76.6
Q ss_pred CcEEEccCccccCcC-CccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCccce----eCCCCCc
Q 046299 1 MKDLFVGNNRLNGTL-TKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTF----NFSSGWI 67 (138)
Q Consensus 1 L~~L~Ls~N~l~~~~-p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~----~~~~~~~ 67 (138)
|++||+++|++++.. .+.+..+ +++++|+|++ .++. ..+..+++|++||+++|.++. .+...+.
T Consensus 4 l~~ld~~~~~i~~~~~~~l~~~l---~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 4 IQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHH---TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCEEEeeCCcCChHHHHHHHHhC---CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 578999999997631 3345567 8999999999 9885 446789999999999999852 1122222
Q ss_pred -cccCcceEEecCCcCCCC----CCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 68 -PPFQLNTIILGSCKMGPG----FPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 68 -~~~~L~~L~l~~n~l~~~----~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
...+|++|++++|++++. ++..+... ++|++|++++|+++
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~----------~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL----------PTLQELHLSDNLLG 125 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSC----------TTCCEEECCSSBCH
T ss_pred cCCCCCCEEECCCCCccccccccccchhhcc----------ccccccccccccch
Confidence 234799999999999743 33444444 44999999999886
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3e-10 Score=83.23 Aligned_cols=99 Identities=15% Similarity=0.015 Sum_probs=75.7
Q ss_pred CCccEEEccc-cccc----ccccCCCCCCEEEcccCccce----eCCCCCccccCcceEEecCCcCCCC----CCCCCCC
Q 046299 26 SFWTSLIILR-KLAG----DIITNLSRLAHMDLSFDLRTF----NFSSGWIPPFQLNTIILGSCKMGPG----FPNPIPE 92 (138)
Q Consensus 26 ~~L~~L~Ls~-~l~~----~~~~~l~~L~~L~ls~N~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~ 92 (138)
.+|+.||+++ ++++ ..+..+++++.|+|++|.++- .+...+...++|++|++++|.++.. +...+..
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 4789999999 9998 567789999999999998862 2233445667899999999998631 2222221
Q ss_pred CCCeEEeccCCCceeEEEeeCCccc-------------CCCCcEEEccCCeeee
Q 046299 93 MPHDVLISSFQQYVFRVDIYFQQYV-------------SQSWTIIDLGINKFSG 133 (138)
Q Consensus 93 l~~~L~ls~~l~~L~~L~ls~N~l~-------------~~~L~~L~Ls~N~l~g 133 (138)
...+|++|++++|+++ .++|++|++++|.++.
T Consensus 82 ---------~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 82 ---------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126 (460)
T ss_dssp ---------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred ---------CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence 1235999999999997 3689999999999864
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=3.5e-08 Score=64.00 Aligned_cols=68 Identities=13% Similarity=-0.044 Sum_probs=42.8
Q ss_pred ccccCCCCCCEEEcccCcccee--CCCCCccccCcceEEecCCcCCCCCCCCCCCCCCeEEeccCCCceeEEEeeCCccc
Q 046299 40 DIITNLSRLAHMDLSFDLRTFN--FSSGWIPPFQLNTIILGSCKMGPGFPNPIPEMPHDVLISSFQQYVFRVDIYFQQYV 117 (138)
Q Consensus 40 ~~~~~l~~L~~L~ls~N~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l~ 117 (138)
..+..+++|++|++++|+++.. ++..+..+.+|+.|++++|.++ .+++. ..+. ..+|+.+++++|.++
T Consensus 59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l-~~l~--------~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SEREL-DKIK--------GLKLEELWLDGNSLS 128 (162)
T ss_dssp HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGH-HHHT--------TCCCSSCCCTTSTTS
T ss_pred HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhh-hhhh--------ccccceeecCCCCcC
Confidence 3445678888888888888632 2233445667888888888887 44431 1111 123777888888775
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=4.3e-08 Score=63.53 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=49.3
Q ss_pred CccccCCCCCCCccEEEccc-cccc-----ccccCCCCCCEEEcccCccceeCCCCCccccCcceEEecCCcCCCCCC
Q 046299 16 TKASDSFPSFSFWTSLIILR-KLAG-----DIITNLSRLAHMDLSFDLRTFNFSSGWIPPFQLNTIILGSCKMGPGFP 87 (138)
Q Consensus 16 p~~~~~l~~~~~L~~L~Ls~-~l~~-----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 87 (138)
+..+..+ ++|++|+|++ +++. ..+..+++|+.|++++|.++...+-.+....+|+++++++|.+.....
T Consensus 58 ~~~~~~~---~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~ 132 (162)
T d1koha1 58 RIIEENI---PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132 (162)
T ss_dssp HHHHHHC---TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred HHHHHhC---CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence 3344567 8999999999 8887 335678999999999999863322122334478999999999875433
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.15 E-value=4.8e-07 Score=58.72 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=64.1
Q ss_pred CCccEEEccc--cccc-------ccccCCCCCCEEEcccCccceeCCCC----CccccCcceEEecCCcCCCCC----CC
Q 046299 26 SFWTSLIILR--KLAG-------DIITNLSRLAHMDLSFDLRTFNFSSG----WIPPFQLNTIILGSCKMGPGF----PN 88 (138)
Q Consensus 26 ~~L~~L~Ls~--~l~~-------~~~~~l~~L~~L~ls~N~l~~~~~~~----~~~~~~L~~L~l~~n~l~~~~----p~ 88 (138)
++|+.|+|++ .++. ..+...+.|++|++++|.++...... +.....|++|++++|.+++.- -.
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~ 94 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 94 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence 7888899986 4554 45667788999999998885222222 223457899999999887321 11
Q ss_pred CCCCCCCeEEeccCCCceeEEEeeCCccc----------------CCCCcEEEccCCee
Q 046299 89 PIPEMPHDVLISSFQQYVFRVDIYFQQYV----------------SQSWTIIDLGINKF 131 (138)
Q Consensus 89 ~~~~l~~~L~ls~~l~~L~~L~ls~N~l~----------------~~~L~~L~Ls~N~l 131 (138)
.+.. .+.|++|++++|++. -++|+.|+++.+..
T Consensus 95 aL~~----------n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 95 STLV----------TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HTTT----------TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHh----------CCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 2332 245888899888644 36788888887654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.68 E-value=5.3e-06 Score=53.55 Aligned_cols=80 Identities=10% Similarity=0.148 Sum_probs=58.1
Q ss_pred CcEEEccCc-cccCc----CCccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCcccee----CC
Q 046299 1 MKDLFVGNN-RLNGT----LTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFN----FS 63 (138)
Q Consensus 1 L~~L~Ls~N-~l~~~----~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~ 63 (138)
|++|+|+++ .++.. +-..+... +.|+.|++++ .+.. ..+...+.|++|++++|.++.. +-
T Consensus 17 L~~L~L~~~~~i~~~~~~~l~~~L~~n---~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 17 LKEVNINNMKRVSKERIRSLIEAACNS---KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTC---SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CcEEEeCCCCCCCHHHHHHHHHHHhhC---CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 688999974 46432 22345566 8899999999 8886 4456678999999999998632 12
Q ss_pred CCCccccCcceEEecCCcCC
Q 046299 64 SGWIPPFQLNTIILGSCKMG 83 (138)
Q Consensus 64 ~~~~~~~~L~~L~l~~n~l~ 83 (138)
..+....+|++|++++|.+.
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~ 113 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQS 113 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSC
T ss_pred HHHHhCCcCCEEECCCCcCC
Confidence 23444567999999999765
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.54 E-value=9.9e-06 Score=52.00 Aligned_cols=96 Identities=4% Similarity=-0.055 Sum_probs=64.3
Q ss_pred CCccEEEccc--cccc-------ccccCCCCCCEEEcccCcccee----CCCCCccccCcceEEecCCcCCCCC----CC
Q 046299 26 SFWTSLIILR--KLAG-------DIITNLSRLAHMDLSFDLRTFN----FSSGWIPPFQLNTIILGSCKMGPGF----PN 88 (138)
Q Consensus 26 ~~L~~L~Ls~--~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----p~ 88 (138)
++|++|++++ .++. ..+...+.|++|++++|.++.. +-..+....+++.+++++|.++... ..
T Consensus 17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~ 96 (166)
T d1io0a_ 17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 96 (166)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence 8899999987 4655 5566788999999999988522 1122334457999999999886321 12
Q ss_pred CCCCCCCeEEeccCCCceeEE--EeeCCccc-------------CCCCcEEEccCCee
Q 046299 89 PIPEMPHDVLISSFQQYVFRV--DIYFQQYV-------------SQSWTIIDLGINKF 131 (138)
Q Consensus 89 ~~~~l~~~L~ls~~l~~L~~L--~ls~N~l~-------------~~~L~~L~Ls~N~l 131 (138)
.+.. .++|+.+ ++++|++. .+.++.|+++.+..
T Consensus 97 ~l~~----------~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 97 ALQS----------NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp GGGG----------CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHh----------CccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 2222 2346654 44567776 47889999887754
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.03 E-value=1.7e-05 Score=50.83 Aligned_cols=103 Identities=10% Similarity=0.171 Sum_probs=67.3
Q ss_pred CcEEEccC-ccccCc----CCccccCCCCCCCccEEEccc-cccc-------ccccCCCCCCEEEcccCcccee----CC
Q 046299 1 MKDLFVGN-NRLNGT----LTKASDSFPSFSFWTSLIILR-KLAG-------DIITNLSRLAHMDLSFDLRTFN----FS 63 (138)
Q Consensus 1 L~~L~Ls~-N~l~~~----~p~~~~~l~~~~~L~~L~Ls~-~l~~-------~~~~~l~~L~~L~ls~N~l~~~----~~ 63 (138)
|++|++++ +.++.. +-.++... ++|++|++++ .++. ..+...+.++.+++++|.++.. +-
T Consensus 19 L~~L~L~~~~~i~~~~~~~l~~al~~n---~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~ 95 (166)
T d1io0a_ 19 LEEVNLNNIMNIPVPTLKACAEALKTN---TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 95 (166)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTC---CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CcEEEcCCCCCCCHHHHHHHHHHHhcC---CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence 57899987 456432 22334466 8999999999 9877 4567788999999999988522 22
Q ss_pred CCCccccCcceEEe--cCCcCCCC----CCCCCCCCCCeEEeccCCCceeEEEeeCCcc
Q 046299 64 SGWIPPFQLNTIIL--GSCKMGPG----FPNPIPEMPHDVLISSFQQYVFRVDIYFQQY 116 (138)
Q Consensus 64 ~~~~~~~~L~~L~l--~~n~l~~~----~p~~~~~l~~~L~ls~~l~~L~~L~ls~N~l 116 (138)
..+....+|+.+++ ++|.++.. +...+.. .+.|+.|+++.+..
T Consensus 96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~----------n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK----------NTTLLKFGYHFTQQ 144 (166)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH----------CSSCCEEECCCSSH
T ss_pred HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHh----------CCCcCEEeCcCCCC
Confidence 34445567887555 56666531 2222222 34588888877654
|