Citrus Sinensis ID: 046316

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960------
METSAVAGDQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELAKINVQGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQVLGDDDEEDSDWEEVQEGDVESDKDLIYSTGAASLGRPTYEHLEAMAKNQGDDYEDDILCVSDPLNEVVSRP
ccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHcccccccccccHHHcccccccccccHHHHHHHHHcccccccccccccccccHHHcccc
ccHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccEEEEcccEEccccccEEccHHcHccccccEccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcccccccccHHHHHcccccccccccHHHHHHHHHccccccccHHHHccccccHEcccc
metsavagdqdQQWLLNCLSatldpnqeVRSFAEVSLNQASLQPAAVLLKHFIKKHWQegeesfelpavsseEKEVIRKLLLSSLDDTHRKICTAISMAVASIAaydwpedwpdLLPFLLKLITdqsnmngvhgGLRCLALLSAdlddaivpklvpvlFPVLHtivsfpesydrYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIilehpvqpedpddwgvKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYtrssiegtedpyagrydsdgaekSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIdanqfladedestyscrVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEdigtgvhqypFLYARIFASVARFSSAISDGVLEHFLSAAITTiamdvpppvkVGACRALsellpkankgnfqpqmMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFltasmepmisPLILNIWalhvsdpfisiDAIEVLEAikcspgciHQLASRilpyvgpilnnpqqqpdglvaGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMlvwggdsgfTMRSLLDAASRllnpdlessgslfvgSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMtipsegygnSFVYVMSEWTKLQGeiqgaypiKVTTTALALLLSTrhpelakinvqghliksdagittrakaklapdqwtvlplpAKILTLLADALIEIQEqvlgdddeedsdweevqegdvesdkdliystgaaslgrptyEHLEAMAKnqgddyeddilcvsdplnevvsrp
metsavagdqdqqWLLNCLSATLDPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKHWQEGEEsfelpavsseeKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLrvytrssiegtedpyagrYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELAKINVQGHLIKSDAGITTRAKAklapdqwtvLPLPAKILTLLADALIEIQEQvlgdddeedSDWEEvqegdvesdkdlIYSTGAaslgrptyEHLEAMAKNQGDDYEDDILCVSdplnevvsrp
METSAVAGDQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRClallsadlddaIvpklvpvlfpvlHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVtttalalllstRHPELAKINVQGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQVLGdddeedsdweevqeGDVESDKDLIYSTGAASLGRPTYEHLEAMAKNQGDDYEDDILCVSDPLNEVVSRP
************QWLLNCLSATLDPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKHWQEG**************EVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIE*****************SLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAAS***********AGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELAKINVQGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQVL*****************************************************DDILCV***********
***********QQWLLNCLSATLDPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKHWQEGEE******VSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQ****AGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELAKINVQGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADAL******************EEVQEGDVESDKDLIYSTGAASLGRPTYEHLEAMA********DDILCVSDPLNEV****
*********QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKHWQEGEE*************VIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKR************TVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELAKINVQGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQVL*******************SDKDLIYSTGAASLGRPTYEHLEAMAKNQGDDYEDDILCVSDPLNEVVSRP
********DQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELAKINVQGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQVLG*******************DK**IYSTG*ASLGRPTYEHLEAM*KN***DYEDDILCVSDPLNEV****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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METSAVAGDQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQPAAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELAKINVQGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQVLGDDDEEDSDWEEVQEGDVESDKDLIYSTGAASLGRPTYEHLEAMAKNQGDDYEDDILCVSDPLNEVVSRP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query966 2.2.26 [Sep-21-2011]
Q91YE61041 Importin-9 OS=Mus musculu yes no 0.896 0.831 0.288 1e-113
Q96P701041 Importin-9 OS=Homo sapien yes no 0.896 0.831 0.289 1e-112
Q10297993 Importin subunit beta-5 O yes no 0.847 0.824 0.214 5e-32
Q55CX91065 Probable importin-7 homol no no 0.555 0.504 0.220 5e-14
P530671004 Importin subunit beta-5 O yes no 0.259 0.25 0.235 5e-08
Q9ZPY7972 Exportin-2 OS=Arabidopsis no no 0.108 0.108 0.312 1e-05
Q9UI26975 Importin-11 OS=Homo sapie no no 0.083 0.083 0.294 3e-05
Q8K2V6975 Importin-11 OS=Mus muscul no no 0.083 0.083 0.294 3e-05
P469701048 Nonsense-mediated mRNA de no no 0.129 0.119 0.288 0.0004
Q029321032 Importin beta-like protei no no 0.248 0.232 0.214 0.0006
>sp|Q91YE6|IPO9_MOUSE Importin-9 OS=Mus musculus GN=Ipo9 PE=1 SV=3 Back     alignment and function desciption
 Score =  409 bits (1052), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 265/919 (28%), Positives = 467/919 (50%), Gaps = 53/919 (5%)

Query: 15  LLNCLSATLDPNQEVRSFAE-------------VSLNQASLQP---------AAVLLKHF 52
           L++ L+  L P QEVR+ AE             V L + ++ P         A+V+LK +
Sbjct: 25  LVDTLTGILSPVQEVRAAAEEQIKVLEVTEEFGVHLAELTVDPQGALAIRQLASVILKQY 84

Query: 53  IKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDW 112
           ++ HW    E F  P  +   K VIR+LL + L ++  K+ ++++ AV++IA +DWPE W
Sbjct: 85  VETHWCAQSEKFRPPETTERAKIVIRELLPNGLRESISKVRSSVAYAVSAIAHWDWPEAW 144

Query: 113 PDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSFPESY 172
           P L   L++++    ++N VHG +R L   + ++ D  +P + PV+ P ++ I +  E Y
Sbjct: 145 PQLFNLLMEMLVS-GDLNAVHGAMRVLTEFTREVTDTQMPLVAPVILPEMYKIFTMAEVY 203

Query: 173 DRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPEDPDD 232
               R++A+ I  +C  M+  M  + K     L+ P+++ +   F   L+ P  P    D
Sbjct: 204 GIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQMPDGPT--SD 261

Query: 233 WGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSI---EGTEDPYA 289
            G KMEVLK +   ++NFP    S    ++  +W T   S   Y R+ +   E  EDP  
Sbjct: 262 SGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDP-- 319

Query: 290 GRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHI 349
              DSDG     ++ V  +FEF+  ++ ++K    +   + EL+Y+ I ++Q+TE+QI +
Sbjct: 320 --VDSDGEVLGFENLVFSIFEFVHALLENSKFKSTVKKALPELIYYIILYMQITEEQIKV 377

Query: 350 WSIDANQFLADEDEST--YSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKA 407
           W+ +  QF+ DED+ T  Y+ R++   LL  V +    E   A+  AA++   E++Q KA
Sbjct: 378 WTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAVALATAATRHLQEAEQTKA 437

Query: 408 AGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLY 467
           +G+  WW++ EA + AL  +   + ++  +G     +   L  +I  D+       PFL 
Sbjct: 438 SGTEHWWKIHEACMLALGSVKSIITDSVKNGRIHFDMHGFLTNVILADLNLSAS--PFLL 495

Query: 468 ARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRAL----SELLPKANKG 523
            R   + +RF+ A+S  +++ FL A ++ +    PP V++ A RA+     +L    +  
Sbjct: 496 GRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTH 555

Query: 524 NFQPQMMGLFSSLADLLHQARDETLHLVLETL--QAAIKAGFLTASMEPMISPLILNIWA 581
             QP +  +   L  L  Q   E L+LV+ETL     +   F TAS+E  I P  + I+ 
Sbjct: 556 VLQPFLPSILDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEF-TASVENKICPFTIAIFL 614

Query: 582 LHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQ-PDGLVAGSLDLL 640
            + +DP ++  A ++ + +     C   +  R++P +  I+  P  + P GL A ++D+L
Sbjct: 615 KYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDIL 674

Query: 641 TMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGD 700
           T ++++    + +      F AV +  L ++D++ MQN  ECL  ++S   + +  W  +
Sbjct: 675 TTVVRNTKPPLSQLLICQAFPAVAQCTLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDE 734

Query: 701 SGFT-MRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQ 759
            G   +  ++   S+LL+P      + FVG  +  LI     ++ +++  ++ A++ ++Q
Sbjct: 735 QGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRELGENLDQILRAILSKMQ 794

Query: 760 SAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQ 819
            A+   +  SL+++FA LVH     +E  +  L ++P      +  +VM+EWT  Q    
Sbjct: 795 QAETLSVMQSLIMVFAHLVHT---QLEPLLEFLCSLPGPTGKPALEFVMAEWTSRQHLFY 851

Query: 820 GAYPIKVTTTALALLL----STRHPELAKINVQGHLIKS-DAGITTRAKAKLAPDQWTVL 874
           G Y  KV++ AL  LL    +     L  I V+G  I S D GI TR+K+   P++WT +
Sbjct: 852 GQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEGIRTRSKSAKNPERWTNI 911

Query: 875 PLPAKILTLLADALIEIQE 893
           PL  KIL L+ + L  + E
Sbjct: 912 PLLVKILKLIINELSNVME 930
Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of RPS7, RPL18A and H2B histone. Prevents the cytoplasmic aggregation of RPS7 and RPL18A by shielding exposed basic domains. May also import RPL4, RPL6 H2A, H3 and H4 histones.
Mus musculus (taxid: 10090)
>sp|Q96P70|IPO9_HUMAN Importin-9 OS=Homo sapiens GN=IPO9 PE=1 SV=3 Back     alignment and function description
>sp|Q10297|IMB5_SCHPO Importin subunit beta-5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap114 PE=3 SV=3 Back     alignment and function description
>sp|Q55CX9|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1 Back     alignment and function description
>sp|P53067|IMB5_YEAST Importin subunit beta-5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP114 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPY7|XPO2_ARATH Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=1 SV=1 Back     alignment and function description
>sp|Q9UI26|IPO11_HUMAN Importin-11 OS=Homo sapiens GN=IPO11 PE=1 SV=1 Back     alignment and function description
>sp|Q8K2V6|IPO11_MOUSE Importin-11 OS=Mus musculus GN=Ipo11 PE=1 SV=1 Back     alignment and function description
>sp|P46970|NMD5_YEAST Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD5 PE=1 SV=2 Back     alignment and function description
>sp|Q02932|KA120_YEAST Importin beta-like protein KAP120 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP120 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query966
2977379201021 unnamed protein product [Vitis vinifera] 0.987 0.934 0.762 0.0
2254237921047 PREDICTED: importin-9-like [Vitis vinife 0.987 0.911 0.743 0.0
4494352661023 PREDICTED: importin-9-like [Cucumis sati 0.983 0.928 0.698 0.0
1864788771022 armadillo/beta-catenin-like repeat-conta 0.986 0.932 0.682 0.0
255546937961 importin, putative [Ricinus communis] gi 0.935 0.940 0.710 0.0
2978455821029 importin beta-2 subunit family protein [ 0.985 0.925 0.674 0.0
3564960341026 PREDICTED: importin-9-like [Glycine max] 0.985 0.927 0.682 0.0
3565026941011 PREDICTED: importin-9-like [Glycine max] 0.974 0.930 0.660 0.0
224101599928 predicted protein [Populus trichocarpa] 0.873 0.909 0.667 0.0
3571181461028 PREDICTED: importin-9-like [Brachypodium 0.967 0.909 0.611 0.0
>gi|297737920|emb|CBI27121.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1510 bits (3910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 746/979 (76%), Positives = 844/979 (86%), Gaps = 25/979 (2%)

Query: 8   GDQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQPA-------------------AVL 48
            DQDQQWLLNCL+ATLD +QEVRSFAE SLNQASLQP                    AVL
Sbjct: 2   ADQDQQWLLNCLTATLDTSQEVRSFAEASLNQASLQPGFGGALSKVAANRELPLGLPAVL 61

Query: 49  LKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDW 108
           LK F+KKHWQEGEE+FE P VSS+EKE+IR+LLL SLDD++RKICTAISMAV+SIA YDW
Sbjct: 62  LKQFVKKHWQEGEENFEHPVVSSDEKEIIRRLLLLSLDDSNRKICTAISMAVSSIAHYDW 121

Query: 109 PEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDAIVPKLVPVLFPVLHTIVSF 168
           PEDWPDLLPFLLKLI DQ+N+NGVHG LRCLALLS DLDD +VPKLVPVLFP LHTIVS 
Sbjct: 122 PEDWPDLLPFLLKLINDQTNINGVHGALRCLALLSGDLDDTVVPKLVPVLFPCLHTIVSS 181

Query: 169 PESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHPVQPE 228
           P+ YD+ +RTKALSIVYSCT+MLGVM+GV KTE   LMMPMLKPWM+ FS ILEHPVQ E
Sbjct: 182 PQIYDKPLRTKALSIVYSCTSMLGVMTGVYKTETSNLMMPMLKPWMDQFSTILEHPVQSE 241

Query: 229 DPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPY 288
           DPDDW ++MEVLKCLNQF+QNFPSL E+EF VVV  LWQTFVSSLRVY  SS+EG +DPY
Sbjct: 242 DPDDWSIRMEVLKCLNQFVQNFPSLTETEFKVVVGPLWQTFVSSLRVYELSSVEGADDPY 301

Query: 289 AGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIH 348
            GRYDSDGAEKSL+SFVIQLFEFLLTIVGS +L KV+A+N+RELVY+TIAFLQ+TEQQ+H
Sbjct: 302 EGRYDSDGAEKSLESFVIQLFEFLLTIVGSRRLAKVVANNLRELVYYTIAFLQITEQQVH 361

Query: 349 IWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAA 408
            WS+DANQ++ADED++TYSCRVSGALLLEEVVS CG EGI+AIIDAA KRFNESQQ K A
Sbjct: 362 TWSLDANQYVADEDDTTYSCRVSGALLLEEVVSSCGLEGIEAIIDAAQKRFNESQQGKVA 421

Query: 409 GSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYPFLYA 468
           GS VWWR+REAT+FALA LSEQLLEAEVSG+T + L +LLE++I EDIGTGV +YPFL+A
Sbjct: 422 GSAVWWRIREATIFALASLSEQLLEAEVSGMTRISLRDLLERLIAEDIGTGVDEYPFLHA 481

Query: 469 RIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQ 528
           R+F+S+A+FSS IS GVLEHFL AAI  I MDVPPPVKVGACRAL +LLP ANK   QP 
Sbjct: 482 RLFSSIAKFSSVISHGVLEHFLYAAIKAIGMDVPPPVKVGACRALFQLLPGANKEILQPH 541

Query: 529 MMGLFSSLADLLHQARDETLHLVLETLQAAIKAG-FLTASMEPMISPLILNIWALHVSDP 587
           +MGLFSSL DLL+QA DETLHLVLETLQAAIK G   +A++EP+ISP+ILN WA HVSDP
Sbjct: 542 LMGLFSSLTDLLNQASDETLHLVLETLQAAIKTGDEASAAIEPIISPIILNTWASHVSDP 601

Query: 588 FISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSA 647
           FISIDA+EVLEAIK + GC+  L SRILPY+GP+LNNPQQQPDGLVAGSLDL+TMLLK++
Sbjct: 602 FISIDAVEVLEAIKNATGCVRPLVSRILPYIGPVLNNPQQQPDGLVAGSLDLVTMLLKNS 661

Query: 648 STDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRS 707
            +DVVK  YDVCFD VIRI+LQS+D+ EMQNATECLA  I+GG+Q ML WGGDSG+TMRS
Sbjct: 662 PSDVVKVVYDVCFDPVIRIVLQSDDYGEMQNATECLAAIIAGGKQEMLAWGGDSGYTMRS 721

Query: 708 LLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLR 767
           LLD ASRLL+PD+ESSGSLFVG+YILQLILHLPSQMA HIRDLVAALVRRLQS QI GLR
Sbjct: 722 LLDVASRLLDPDMESSGSLFVGTYILQLILHLPSQMAPHIRDLVAALVRRLQSCQITGLR 781

Query: 768 SSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVT 827
           SSLLLIFARLVHMSAPNVE FI++L+T+P++ Y NSFVYVMSEW K QGEIQGAY IKVT
Sbjct: 782 SSLLLIFARLVHMSAPNVEQFIDLLVTVPAKDYDNSFVYVMSEWAKQQGEIQGAYQIKVT 841

Query: 828 TTALALLLSTRHPELAKINVQGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADA 887
           TTALALLLSTRH ELAKINVQGHL+K+ AGITTR+KAK  PDQWTV+PLPAKIL LLAD 
Sbjct: 842 TTALALLLSTRHVELAKINVQGHLVKTIAGITTRSKAKSTPDQWTVMPLPAKILALLADV 901

Query: 888 LIEIQEQVLGDDDEEDSDWEEVQEGDVESDKDLIYSTGAASLGRPTYEHLEAMAK----N 943
           LIEIQEQV G  ++EDSDWEE+Q  DVE+D+DL+ S+GA S GRPTYE LEAMAK    N
Sbjct: 902 LIEIQEQV-GIGNDEDSDWEEIQAEDVETDQDLVISSGATSFGRPTYEQLEAMAKVFDEN 960

Query: 944 QGDDYEDDILCVSDPLNEV 962
           Q D  EDD+L  +DPLNE+
Sbjct: 961 QEDGDEDDLLSGADPLNEI 979

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225423792|ref|XP_002277492.1| PREDICTED: importin-9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435266|ref|XP_004135416.1| PREDICTED: importin-9-like [Cucumis sativus] gi|449493512|ref|XP_004159325.1| PREDICTED: importin-9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|186478877|ref|NP_173942.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|332192536|gb|AEE30657.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255546937|ref|XP_002514526.1| importin, putative [Ricinus communis] gi|223546130|gb|EEF47632.1| importin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297845582|ref|XP_002890672.1| importin beta-2 subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297336514|gb|EFH66931.1| importin beta-2 subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356496034|ref|XP_003516875.1| PREDICTED: importin-9-like [Glycine max] Back     alignment and taxonomy information
>gi|356502694|ref|XP_003520152.1| PREDICTED: importin-9-like [Glycine max] Back     alignment and taxonomy information
>gi|224101599|ref|XP_002312347.1| predicted protein [Populus trichocarpa] gi|222852167|gb|EEE89714.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357118146|ref|XP_003560819.1| PREDICTED: importin-9-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query966
TAIR|locus:20288251022 AT1G26170 "AT1G26170" [Arabido 0.963 0.910 0.645 0.0
UNIPROTKB|Q96P701041 IPO9 "Importin-9" [Homo sapien 0.939 0.872 0.272 8.4e-102
MGI|MGI:19189441041 Ipo9 "importin 9" [Mus musculu 0.939 0.872 0.271 1.4e-101
ZFIN|ZDB-GENE-040426-29531043 ipo9 "importin 9" [Danio rerio 0.871 0.807 0.279 4.6e-101
UNIPROTKB|G5E567987 IPO9 "Uncharacterized protein" 0.939 0.919 0.273 2.7e-100
RGD|13105371046 Ipo9 "importin 9" [Rattus norv 0.939 0.868 0.270 5.3e-100
UNIPROTKB|F1PS41991 IPO9 "Uncharacterized protein" 0.939 0.916 0.271 7.4e-98
UNIPROTKB|F1NRZ6989 IPO9 "Uncharacterized protein" 0.950 0.928 0.263 5.9e-96
DICTYBASE|DDB_G02793271110 cnrP "putative cell number reg 0.629 0.547 0.239 3.8e-55
FB|FBgn00378941018 Ranbp9 "Ranbp9" [Drosophila me 0.868 0.824 0.217 3.1e-52
TAIR|locus:2028825 AT1G26170 "AT1G26170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3086 (1091.4 bits), Expect = 0., Sum P(2) = 0.
 Identities = 604/936 (64%), Positives = 713/936 (76%)

Query:    30 RSFAEVSLNQASLQPAAVLLKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTH 89
             R  A   L+    Q AAVLLK FIKKHW+E EE+FE P VSSEEK +IR  LL SLDD+H
Sbjct:    47 RVAANKDLSLGLRQLAAVLLKQFIKKHWRENEEAFEYPLVSSEEKALIRGQLLGSLDDSH 106

Query:    90 RKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCXXXXXXXXXXX 149
             RKICTAISM ++SIA YDWPE+WP+L+PFLLKLI+D SN NGVHG LRC           
Sbjct:   107 RKICTAISMDISSIATYDWPEEWPELVPFLLKLISDPSNTNGVHGALRCLALLSGELDDK 166

Query:   150 IXXXXXXXXXXXXHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPM 209
                          H +VS P+SYD+Y+R KAL+IVYSC  +LG MSGV KTE   L+ P+
Sbjct:   167 EVPTLVPVLFPCLHAVVSSPQSYDKYIRGKALTIVYSCIYVLGAMSGVYKTETTTLVTPV 226

Query:   210 LKPWMNHFSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTF 269
             LK WMN FS+ILEHPVQ EDPDDW ++MEVLKCLNQF+QNFPSL ESE + ++R LW TF
Sbjct:   227 LKVWMNQFSLILEHPVQREDPDDWSLRMEVLKCLNQFVQNFPSLIESELMAIMRPLWHTF 286

Query:   270 VSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNV 329
              SSL+VY RSSI+G ED Y GRYDSDG EKSLD+FVIQLFEFL TIV S +L K IA NV
Sbjct:   287 ESSLQVYLRSSIDGAEDSYDGRYDSDGEEKSLDTFVIQLFEFLSTIVSSRRLSKTIAGNV 346

Query:   330 RELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCGREGID 389
             RELVY T+AFLQ+TEQQ+H WS+D NQF+ADEDE +YSCR+SG LLLEEV++  G EGI+
Sbjct:   347 RELVYQTVAFLQITEQQVHTWSMDVNQFVADEDEGSYSCRISGILLLEEVINTFGSEGIN 406

Query:   390 AIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLE 449
             A++DAA KRF ESQ+E +A S  WWR+REA LF LA LS+QL+EAE   +    L + +E
Sbjct:   407 AVVDAAGKRFQESQRENSASSLSWWRLREAVLFTLASLSDQLVEAEDLRIDPANLAKFIE 466

Query:   450 QMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGA 509
             Q+I ED G G H+ PFLYARIF +VA+FSS I+ G+LEHFL+AA+  I MDVPPPVKVGA
Sbjct:   467 QLIMEDTGIGYHECPFLYARIFTAVAKFSSVINAGILEHFLNAAVRAITMDVPPPVKVGA 526

Query:   510 CRALSELLPKANKGNFQPQMMGLFSSLADLLHQARDETLHLVLETLQAAIKAGF-LTASM 568
             CRAL +LLP  N     PQ+M LFSSL DLL QA DETL LVLETLQ AIKAG   +AS+
Sbjct:   527 CRALLQLLPDMNSSVILPQIMNLFSSLTDLLRQATDETLVLVLETLQQAIKAGHEASASI 586

Query:   569 EPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPILNNPQQQ 628
             E +ISP+ILN+W  H+SDPF+SID I+VLEAIK SPGC+H L SRILP++GPILN P QQ
Sbjct:   587 ESIISPVILNVWVAHISDPFMSIDVIDVLEAIKNSPGCLHPLTSRILPFIGPILNKPHQQ 646

Query:   629 PDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFIS 688
             P+GL +GSLDLLTMLLK A +D+VK AYD CF AVIRI+L SEDH E+QNATECLA FIS
Sbjct:   647 PEGLASGSLDLLTMLLKGAPSDIVKTAYDFCFAAVIRIVLHSEDHGELQNATECLAAFIS 706

Query:   689 GGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIR 748
              GRQ +L W GD GFTMRSLLDA SRLLNPDLE SGSLF G YILQLILHLPS+MA H++
Sbjct:   707 SGRQELLTWSGDPGFTMRSLLDATSRLLNPDLEGSGSLFAGKYILQLILHLPSEMAPHVQ 766

Query:   749 DLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSFVYVM 808
             DLVAALVRRLQSA+I  L+ SLLLIFARLVHMS PNV+ FIN+L++IP++G+ NSF YVM
Sbjct:   767 DLVAALVRRLQSAEILALKGSLLLIFARLVHMSYPNVDQFINLLVSIPADGHENSFTYVM 826

Query:   809 SEWTKLQGEIQGAYPIKVXXXXXXXXXXXRHPELAKINVQGHLIKSDAGITTRAKAKLAP 868
             +EWTK QGEIQ AY IKV           RH E AK+NV G  I+S+ GITTR+KA+ AP
Sbjct:   827 TEWTKQQGEIQSAYQIKVTTSALALLLSTRHSEFAKVNVPGSPIQSNGGITTRSKARSAP 886

Query:   869 DQWTVLPLPAKILTLLADALIEIQEQVLGXXXXXXXXXXXXXXGDVESDKDLIYSTGAAS 928
             +QWT++PLP KIL LLAD LIEIQEQVL               GD +++KDL+ S G + 
Sbjct:   887 EQWTIIPLPMKILALLADTLIEIQEQVLSNEDEDSEWEEVHE-GDAKAEKDLLRSAGTSQ 945

Query:   929 LGRPTYEHLEAMAK--NQGDDYEDDILCVSDPLNEV 962
               +PTY+ LEAMA+  NQ DD  DD L  +DPLNE+
Sbjct:   946 FSKPTYDQLEAMARFENQ-DDEVDDHLLGTDPLNEI 980
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
UNIPROTKB|Q96P70 IPO9 "Importin-9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1918944 Ipo9 "importin 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2953 ipo9 "importin 9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G5E567 IPO9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1310537 Ipo9 "importin 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PS41 IPO9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRZ6 IPO9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279327 cnrP "putative cell number regulator" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0037894 Ranbp9 "Ranbp9" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query966
COG5656970 COG5656, SXM1, Importin, protein involved in nucle 3e-14
COG5657947 COG5657, CSE1, CAS/CSE protein involved in chromos 4e-08
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 6e-04
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 0.004
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score = 77.2 bits (190), Expect = 3e-14
 Identities = 99/552 (17%), Positives = 188/552 (34%), Gaps = 70/552 (12%)

Query: 11  DQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVL 48
            ++ LL C   TLD +   R+ AE  L     QP                      AA+ 
Sbjct: 1   MREELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIY 60

Query: 49  LKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDW 108
            K+ I + W    +        SE K+ + + +L     +     TA++  + +I + D 
Sbjct: 61  FKNKIIRSWSSKRDDGIKADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDK 120

Query: 109 PEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALL------SADLDDAIVPKLVPVLFPVL 162
           P D   L P    L+   S  N V+ GL CL  L        + +   +  L+  LFP+L
Sbjct: 121 PSDLWGLFPKAANLLRS-SEANHVYTGLLCLEELFKAYRWKYNDEQVDILMLITALFPIL 179

Query: 163 HTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEM--FALMMPMLKPWMNHFSII 220
             +    ES   Y   + L ++      L     VC   +  F   +     W      I
Sbjct: 180 EKVGGNLESQGNYGSVETLMLI------LKSFKSVCYYSLPDFLSAIETFSSWFQLSLRI 233

Query: 221 LEHP----VQPEDPDDWGVKMEVLKC-------LNQFIQNFPSLAESEFLVVVRSLWQTF 269
           L+ P    V   DP+   +   V KC       L +  Q +    +  +     S + TF
Sbjct: 234 LQKPLPNEVLSLDPEVRSLSKWV-KCKKWAAYNLYRSFQRY---IKKSYKKSYLSFYITF 289

Query: 270 VSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIASNV 329
           ++ + +   +  +  E+         G     D  +  +  F+   V + +  +++  ++
Sbjct: 290 MTRVPMILATFFKQIEEW------GQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHL 343

Query: 330 RELVYHTI-AFLQMTEQQIHIWSIDANQFLA---DEDESTYSCRVSGALLLEEVVSYCGR 385
           + ++   I   L ++E++  ++  D ++++    D  ++  S  ++    L    S    
Sbjct: 344 QYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKE 403

Query: 386 EGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLG 445
           E    I+        +S    +       R  E  L  LA +   + +       S    
Sbjct: 404 ETFQGILSFLLSILGQSAATPSNIDNA--RQAEGALRLLASIKSFITK------MSPAAN 455

Query: 446 ELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPV 505
            +   ++   I      Y FL +R    ++       D  +             +   PV
Sbjct: 456 VMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPV 515

Query: 506 KVGACRALSELL 517
            + A  AL   +
Sbjct: 516 MIEAALALQFFI 527

Length = 970
>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 966
KOG22741005 consensus Predicted importin 9 [Intracellular traf 100.0
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
COG5656970 SXM1 Importin, protein involved in nuclear import 100.0
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 100.0
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 99.9
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.81
COG51011053 CRM1 Importin beta-related nuclear transport recep 99.7
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.59
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 99.52
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.49
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.32
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.22
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.17
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.13
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.11
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.0
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 98.53
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.53
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.47
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.47
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.43
KOG12481176 consensus Uncharacterized conserved protein [Funct 98.39
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 98.31
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.29
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.25
PTZ00429746 beta-adaptin; Provisional 98.1
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.03
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.82
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.71
KOG1242569 consensus Protein containing adaptin N-terminal re 97.69
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.6
KOG12481176 consensus Uncharacterized conserved protein [Funct 97.55
KOG0212 675 consensus Uncharacterized conserved protein [Funct 97.55
KOG1242569 consensus Protein containing adaptin N-terminal re 97.51
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.49
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 97.48
PTZ00429746 beta-adaptin; Provisional 97.45
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.35
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.34
KOG1410 1082 consensus Nuclear transport receptor RanBP16 (impo 97.32
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.27
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.15
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 97.08
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.98
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 96.94
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 96.91
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 96.88
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 96.77
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 96.68
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 96.61
KOG09151702 consensus Uncharacterized conserved protein [Funct 96.6
PRK09687280 putative lyase; Provisional 96.35
PF08167165 RIX1: rRNA processing/ribosome biogenesis 96.35
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.23
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.2
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 96.06
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.85
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 95.81
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.58
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 95.53
PF04510174 DUF577: Family of unknown function (DUF577); Inter 95.52
PRK09687280 putative lyase; Provisional 95.4
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.38
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.36
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 95.34
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 94.9
COG5096 757 Vesicle coat complex, various subunits [Intracellu 94.83
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 94.77
PF05004309 IFRD: Interferon-related developmental regulator ( 94.52
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 94.49
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.26
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 93.91
PF08167165 RIX1: rRNA processing/ribosome biogenesis 93.91
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 93.81
PF05804708 KAP: Kinesin-associated protein (KAP) 93.81
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 93.74
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 93.66
PF14500262 MMS19_N: Dos2-interacting transcription regulator 93.61
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 93.42
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 93.36
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 93.13
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 93.02
PF05004309 IFRD: Interferon-related developmental regulator ( 92.74
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 92.29
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 92.25
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 92.07
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 91.77
KOG2956516 consensus CLIP-associating protein [General functi 91.67
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 91.67
KOG2032533 consensus Uncharacterized conserved protein [Funct 91.6
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 90.97
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 90.96
PF05536543 Neurochondrin: Neurochondrin 90.83
KOG4224550 consensus Armadillo repeat protein VAC8 required f 90.77
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 90.6
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 90.21
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 90.15
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 90.13
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 90.03
KOG0414 1251 consensus Chromosome condensation complex Condensi 89.75
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 89.67
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 89.66
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 89.58
KOG2549576 consensus Transcription initiation factor TFIID, s 89.5
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 89.46
COG5096 757 Vesicle coat complex, various subunits [Intracellu 89.44
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 88.5
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 88.45
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 88.05
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 87.97
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 87.12
PF1036392 DUF2435: Protein of unknown function (DUF2435) 86.94
KOG2956516 consensus CLIP-associating protein [General functi 86.59
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 86.49
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 85.6
PF14911373 MMS22L_C: S-phase genomic integrity recombination 85.12
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 84.9
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 84.54
PF14500262 MMS19_N: Dos2-interacting transcription regulator 84.46
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 84.28
KOG4653982 consensus Uncharacterized conserved protein [Funct 84.13
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 83.05
COG51011053 CRM1 Importin beta-related nuclear transport recep 83.03
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 82.71
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 81.9
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 81.63
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 81.07
PF13251182 DUF4042: Domain of unknown function (DUF4042) 80.97
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 80.58
PF13251182 DUF4042: Domain of unknown function (DUF4042) 80.14
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-143  Score=1195.56  Aligned_cols=923  Identities=36%  Similarity=0.579  Sum_probs=836.5

Q ss_pred             CCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhccccccccccCC
Q 046316           10 QDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGEESFELP   67 (966)
Q Consensus        10 ~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~~~~~~~   67 (966)
                      +..+++.++|.+.+|||+++|.+||.+|++++..+                      |.|+||+||++||++.++.|+.|
T Consensus         1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~   80 (1005)
T KOG2274|consen    1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP   80 (1005)
T ss_pred             CcHHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence            35688999999999999999999999999999976                      88999999999999999999987


Q ss_pred             C-CChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc
Q 046316           68 A-VSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL  146 (966)
Q Consensus        68 ~-i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l  146 (966)
                      . .+++.|..||+.|+.++.++++|||+++||+|+.||++|||++||+|+|.++.++.+ +|.+.+||||+||.++++++
T Consensus        81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~-~n~n~i~~am~vL~el~~ev  159 (1005)
T KOG2274|consen   81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS-GNENSIHGAMRVLAELSDEV  159 (1005)
T ss_pred             CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHH
Confidence            7 999999999999999999999999999999999999999999999999999999998 59999999999999999999


Q ss_pred             cccchhhhhhhHHHHHHHHhcCCCCCcHHHHHHH--HHHHHHHHHHHHhhhccchhHHHHhhHhhhHHHHHHHHHHhcCC
Q 046316          147 DDAIVPKLVPVLFPVLHTIVSFPESYDRYVRTKA--LSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNHFSIILEHP  224 (966)
Q Consensus       147 ~~~~~~~i~~~l~p~L~~i~~~~~~~~~~~r~~a--l~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~w~~~~~~~L~~~  224 (966)
                      ..++...+++..++.++.++.....++..+|..+  +++|++|+.+++...+.....++.++.+.+++||+.|.+.++.+
T Consensus       160 ~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~  239 (1005)
T KOG2274|consen  160 DVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRN  239 (1005)
T ss_pred             HHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            8877778889999999999987776777666554  59999999999888777777788999999999999999999885


Q ss_pred             CCCCCCChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHHHhhccCCCCCCCCCcCCCCCccchHHH
Q 046316          225 VQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYTRSSIEGTEDPYAGRYDSDGAEKSLDSF  304 (966)
Q Consensus       225 ~~~~d~~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~d~~g~~~~~~~l  304 (966)
                      .    .++|.+++++.|+++.+.++||+++.+++..++.+.|+.+.+++..|++..++.+++....++|++|+..+++.+
T Consensus       240 ~----g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l  315 (1005)
T KOG2274|consen  240 D----GSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETL  315 (1005)
T ss_pred             c----cchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHh
Confidence            4    367899999999999999999999999999999999999999999999999988877777789999999999999


Q ss_pred             HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHhhcCCHHHHHHHhhCHHHHhhcccCCccchhhHHHHHHHHHHHHhC
Q 046316          305 VIQLFEFLLTIVGSAKLVKVIASNVRELVYHTIAFLQMTEQQIHIWSIDANQFLADEDESTYSCRVSGALLLEEVVSYCG  384 (966)
Q Consensus       305 ~~~~~efl~~~~~~~~~~~~l~~~l~~li~~li~~~~lt~ed~e~w~~Dp~~fv~de~d~~~s~R~aa~~lL~~L~~~~~  384 (966)
                      +.++++|++.++....+++.++..++++++.++-|+|+++++++.|.+|||+||.+|++. |++|.++.+++.++...|+
T Consensus       316 ~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~~rd~~~~v~~~f~  394 (1005)
T KOG2274|consen  316 VIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARISVRDLLLEVITTFG  394 (1005)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhhHHHHHHHHHHhcc
Confidence            999999999999888888888878999999999999999999999999999999999877 9999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHHHhHhcCCccccHHHHHHHHHhhhhcCCCCCCh
Q 046316          385 REGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTSVRLGELLEQMITEDIGTGVHQYP  464 (966)
Q Consensus       385 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~  464 (966)
                      ...+.++.....++++++++....+++.||+..|+++++.+....+-        ..++...++...+...+.  .+..|
T Consensus       395 ~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--------~~dd~l~~l~~~~~~~l~--~~e~P  464 (1005)
T KOG2274|consen  395 NEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--------ANDDKLIELTIMIDNGLV--YQESP  464 (1005)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--------chHHHHHHHHHHHHhhcc--cccCH
Confidence            99999999999999999999888888899999999999998876321        123444445555555554  47889


Q ss_pred             hHHHHHHHHHHHhhhh--cChhHHHHHHHHHHhhhcCCCCCcEehhHHHHHHhhcccCCCCCccccHHHHHHHHHHHHhh
Q 046316          465 FLYARIFASVARFSSA--ISDGVLEHFLSAAITTIAMDVPPPVKVGACRALSELLPKANKGNFQPQMMGLFSSLADLLHQ  542 (966)
Q Consensus       465 ~Lr~Ra~~~l~~f~~~--~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A~~al~~~~~~~~~~~l~p~l~~il~~L~~ll~~  542 (966)
                      +|-+||+|++++|++.  ..++....++...++.+..+...++|++|+++++.+|   ....++|++|.|+++|.++..+
T Consensus       465 ~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~  541 (1005)
T KOG2274|consen  465 FLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASK  541 (1005)
T ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHccc
Confidence            9999999999999998  5678999999999999998888999999999999999   4578999999999999999999


Q ss_pred             cChhhHHHHHHHHHHHHhhcc-hhhcccccchHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCCcHHHHHHhhhcchHhh
Q 046316          543 ARDETLHLVLETLQAAIKAGF-LTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIKCSPGCIHQLASRILPYVGPI  621 (966)
Q Consensus       543 ~~~d~l~~~le~l~~~i~~~~-~~~~~~~~l~p~~l~l~~~~~~d~~~~~~~~~~l~~l~~~~~~~~~l~~~~lP~l~~~  621 (966)
                      +++|++..+||+|..+++.|+ +++...+.|+|+++.+|.++.+||++...+++||+.++....||.+++++++|.+.++
T Consensus       542 ~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisi  621 (1005)
T KOG2274|consen  542 SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISV  621 (1005)
T ss_pred             ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCC-CCCchhhHHHHHHHHHHhhcCChhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccC
Q 046316          622 LNNPQ-QQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGD  700 (966)
Q Consensus       622 l~~~~-~~~~~~~~~al~ll~~l~~~~~~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~  700 (966)
                      ++.+. ..+.+++..++|++++++|+.|++++..++.++||++.++.++|+|++.+|+|++||++||.++.+|+++|+++
T Consensus       622 l~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e  701 (1005)
T KOG2274|consen  622 LQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDE  701 (1005)
T ss_pred             HcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccC
Confidence            99665 34468999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcchHHHHHHHHHhhcCCCCCCccccchHHHHHHHHHhCChhhhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 046316          701 SGFTMRSLLDAASRLLNPDLESSGSLFVGSYILQLILHLPSQMAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHM  780 (966)
Q Consensus       701 ~~~~l~~il~i~~~lL~~~~~~~~~~~vg~Lv~~li~~~~~~l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~  780 (966)
                      ++..+.++|+++++||+|+.+|++|++||+|+.+|+.++|.+++|.+++||+|++.||+++++.+++|||++|||||++.
T Consensus       702 ~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t  781 (1005)
T KOG2274|consen  702 PGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT  781 (1005)
T ss_pred             CCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC
Confidence            77779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHhhcCCCCCCcCcHHHHHHHHhcccccccccchhHHHHHHHHHHH----ccCCcccccceeccccccCC-
Q 046316          781 SAPNVEWFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLL----STRHPELAKINVQGHLIKSD-  855 (966)
Q Consensus       781 ~~~~~~~~l~~L~~i~~~~~~~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll----~~~d~~l~~i~v~g~~i~~~-  855 (966)
                         +++++++||+|+|++++.++|++||++|+++|+.|+|.|++|+++.|+||++    +++|+||++|+|||++|++. 
T Consensus       782 ---~~~~~l~FL~Slp~~~g~~AlefVMteW~srqhl~~g~ye~kv~i~alc~al~~~~~~ddkrLq~V~VkGelI~s~d  858 (1005)
T KOG2274|consen  782 ---DLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQHLYFGEYEGKVSIKALCKALQHLISTDDKRLQKVRVKGELIYSMD  858 (1005)
T ss_pred             ---CHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHhhhccCChhhceeeECCeecccCC
Confidence               9999999999999999999999999999999999999999999888888876    78999999999999999984 


Q ss_pred             CCccchhhhccCCCceEEecchHHHHHHHHHHHHHHHhhhcC---------CCCCCCCcccccccCCCCccchhhhhccc
Q 046316          856 AGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQVLG---------DDDEEDSDWEEVQEGDVESDKDLIYSTGA  926 (966)
Q Consensus       856 ~gi~tRs~a~~~p~~~t~ip~~~Ki~klL~~~l~~~~~~~~~---------~~d~~~~dwe~~~~~~~~~~~~~~~~~~~  926 (966)
                      +|||||||||++|+|||+||+++||+|+|++||++.+|+...         .||+ +|+|||.+++.++. ++.    .|
T Consensus       859 ~~I~TRSka~k~Perwt~IPl~vKIlkLli~Els~~~e~~~~~qa~p~e~sqdd~-nD~wdD~~~~~e~~-d~l----~g  932 (1005)
T KOG2274|consen  859 EGIITRSKAKKNPERWTNIPLLVKILKLLISELSNVSEQNAARQAIPSEWSQDDG-NDMWDDQPEEEEEE-DGL----AG  932 (1005)
T ss_pred             CCeeehhhhccCchheeeccHHHHHHHHHHHHHHHHhhcccccccCCchhhhhcc-ccccccCCcCcccc-cch----hh
Confidence            679999999999999999999999999999999999999331         2333 66687766522222 111    22


Q ss_pred             ccCCCCchhHHHHhhccCCCCCcccCcC-CCCCccccCCC
Q 046316          927 ASLGRPTYEHLEAMAKNQGDDYEDDILC-VSDPLNEVVSR  965 (966)
Q Consensus       927 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~d~~~~~~~~  965 (966)
                      +.    -+|.| ....|..+|||.|||+ .+||+||+||+
T Consensus       933 ~~----lsD~l-~~d~D~~eDDe~dd~~~lkd~~yq~dlq  967 (1005)
T KOG2274|consen  933 QL----LSDIL-ETDVDEYEDDEEDDPDLLKDPLYQIDLQ  967 (1005)
T ss_pred             hh----HHHHH-hccccccccccccchhhccCcchhhhHH
Confidence            22    12322 2222334466777788 99999999986

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query966
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 1e-65
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 3e-64
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-46
1qgr_A876 Protein (importin beta subunit); transport recepto 1e-37
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 4e-28
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 2e-13
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 2e-11
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 1e-10
2x19_B963 Importin-13; nuclear transport, protein transport; 2e-10
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 5e-09
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
2x1g_F971 Cadmus; transport protein, developmental protein, 4e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-04
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
 Score =  238 bits (607), Expect = 1e-65
 Identities = 113/965 (11%), Positives = 298/965 (30%), Gaps = 141/965 (14%)

Query: 11  DQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVL 48
           D + +   L+ ++  +      +E +L Q   Q                        A+ 
Sbjct: 3   DLETVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALF 60

Query: 49  LKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDW 108
            K+FIK+ W +   +  LPA      E+I+K ++  +      +   I  A++SIA  D+
Sbjct: 61  FKNFIKRKWVDENGNHLLPA---NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF 117

Query: 109 PEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADLDDA------------IVPKLVP 156
           P+ WP LL  L   +++  +M    G L     +                   ++     
Sbjct: 118 PDRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTA 176

Query: 157 VLFPVLHTIVSFPESYDRYVRTKALSIVYSCTAMLGVMSGVCKTEMFALMMPMLKPWMNH 216
               +L T+     + +   +     +      ++ +       ++       ++  M  
Sbjct: 177 PFLNLLKTVDEQITANENN-KASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGI 235

Query: 217 FSIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVY 276
           F   L +     +  D      VL  +   IQ    L  + +  V   +   F+      
Sbjct: 236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQI---- 291

Query: 277 TRSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIAS--NVRELVY 334
                            S   +   D  V +   FL  +    K  ++  +   +  +  
Sbjct: 292 -----------TWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE 340

Query: 335 HTI-AFLQMTEQQIHIWSIDANQFLADEDEST--YSCRVSGALLLEEVVSYCGREGIDAI 391
             I   + + E+ + ++  D  +++  + E +   + R +    L+E+         +  
Sbjct: 341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIF 400

Query: 392 IDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTS---VRLGELL 448
           +            +  +  +  W+ ++  ++    L+           ++   + + +  
Sbjct: 401 LAHMKGFV----DQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456

Query: 449 EQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVG 508
            + I  D+ +    +  L       +  F + ++   L   +    T +  D    V   
Sbjct: 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE-YVVYTY 515

Query: 509 ACRALSELL----------PKANKGNFQPQMMGLFSSLADLLHQARDETLHL-----VLE 553
           A   + ++L             +K +       L  +L  L+ +       L     ++ 
Sbjct: 516 AAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMR 575

Query: 554 TLQAAIKA--GFLTASMEPMISPL--ILNIWALHVSDPFISIDAIEVLEAI--KCSPGCI 607
           ++   ++     +      +++    I+ I A + S+P  +    E + AI        +
Sbjct: 576 SIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL 635

Query: 608 HQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRII 667
             L   ++P    + +   Q+    +     ++  +++ ++T  +  +       ++   
Sbjct: 636 PLLVDSMMPTFLTVFSEDIQE---FIPYVFQIIAFVVEQSAT--IPESIKPLAQPLLAPN 690

Query: 668 LQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLF 727
           +  E    +   T  L +FI     +           +  +L    RL+           
Sbjct: 691 VW-ELKGNIPAVTRLLKSFIKTDSSIF--------PDLVPVLGIFQRLIASKAYEVHGFD 741

Query: 728 VGSYILQLILHLPSQ-MAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVE 786
           +   +  ++L +    +  +I+ +   L++RLQ+++       L + F  + +      +
Sbjct: 742 L---LEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNK--LGSD 796

Query: 787 WFINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELAKIN 846
           + I+ +  +    +   +    +        I      K+    +  ++       +K  
Sbjct: 797 FLIHFIDEVQDGLFQQIW---GNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKY- 852

Query: 847 VQGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQVLGDDDEEDSDW 906
                                P   +        +  + +         L +D  +  + 
Sbjct: 853 ---------------------PTLIS------STMNSIIETASSQSIANLKNDYVDLDNL 885

Query: 907 EEVQE 911
           EE+  
Sbjct: 886 EEIST 890
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query966
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.98
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.97
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.97
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.93
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.92
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.85
1qgr_A876 Protein (importin beta subunit); transport recepto 99.83
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.82
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.74
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.63
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.58
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.19
2x1g_F971 Cadmus; transport protein, developmental protein, 99.19
2x19_B963 Importin-13; nuclear transport, protein transport; 99.16
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.95
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.9
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.83
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.66
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.61
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.59
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.58
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 98.54
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.53
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.52
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 98.51
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 98.47
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.44
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.43
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.42
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.39
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.38
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.37
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.28
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.17
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.11
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.08
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.04
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.02
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.94
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.85
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.78
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.7
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.68
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.66
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.65
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.64
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.61
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 97.37
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 96.87
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.83
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 96.79
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 96.78
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 96.77
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.67
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.63
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.57
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 96.53
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 96.46
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.42
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.38
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.26
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.25
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 96.14
2db0_A253 253AA long hypothetical protein; heat repeats, hel 95.95
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 95.78
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 95.6
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 95.59
3grl_A651 General vesicular transport factor P115; vesicle t 95.56
3nmz_A458 APC variant protein; protein-protein complex, arma 95.55
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 95.17
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 95.16
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 94.94
3nmz_A458 APC variant protein; protein-protein complex, arma 94.62
3grl_A 651 General vesicular transport factor P115; vesicle t 94.38
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 94.38
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 93.61
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 93.36
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 93.19
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 93.07
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 92.71
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 91.1
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 90.41
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 88.98
2db0_A253 253AA long hypothetical protein; heat repeats, hel 88.84
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 88.04
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 88.0
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 87.72
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 87.24
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 86.22
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 86.15
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 84.24
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 83.31
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
Probab=100.00  E-value=3.3e-70  Score=694.75  Aligned_cols=758  Identities=13%  Similarity=0.198  Sum_probs=591.5

Q ss_pred             cCCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhccccccccccC
Q 046316            9 DQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGEESFEL   66 (966)
Q Consensus         9 ~~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~~~~~~   66 (966)
                      |.|.++|.++|.+++|||+++|  ||++|++++++|                      |+++|||+|+++|+...+.   
T Consensus         1 M~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~---   75 (960)
T 1wa5_C            1 MSDLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGN---   75 (960)
T ss_dssp             CCHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSC---
T ss_pred             CCcHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccC---
Confidence            4567899999999999999999  999999998887                      9999999999999865432   


Q ss_pred             CCCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc
Q 046316           67 PAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL  146 (966)
Q Consensus        67 ~~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l  146 (966)
                      +.+++++|..||+.|++++.++++.||+++|.+|+.||++|||++||+|++.|++.++++ ++..++|||.+|+.++++.
T Consensus        76 ~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~~~  154 (960)
T 1wa5_C           76 HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFKRW  154 (960)
T ss_dssp             BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999987779999999999999999999999999999999999884 8889999999999999975


Q ss_pred             cc-----c---chhhhhhhHHHHHHHHh-------cCCCCCcH------HHHHHHHHHHHHHHHHHHhhhccchhHHHHh
Q 046316          147 DD-----A---IVPKLVPVLFPVLHTIV-------SFPESYDR------YVRTKALSIVYSCTAMLGVMSGVCKTEMFAL  205 (966)
Q Consensus       147 ~~-----~---~~~~i~~~l~p~L~~i~-------~~~~~~~~------~~r~~al~i~~~~~~~l~~~~~~~~~~~~~~  205 (966)
                      ..     +   .+..+....+|.+++++       ++......      .++..++|+|+.+..          .+.+++
T Consensus       155 ~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~----------~~~~~~  224 (960)
T 1wa5_C          155 RPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNC----------QDIPEF  224 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHS----------SCCCHH
T ss_pred             HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh----------ccchHH
Confidence            32     1   22334555566555544       32211111      222334555543221          123455


Q ss_pred             hHhhhHHHHHHHHHHhcCCCCC--CC---C---ChhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHH
Q 046316          206 MMPMLKPWMNHFSIILEHPVQP--ED---P---DDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYT  277 (966)
Q Consensus       206 ~~~~l~~w~~~~~~~L~~~~~~--~d---~---~~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~  277 (966)
                      +.+.+..|++.|.++++...+.  .|   .   ..+++|+++++++.+++++|++.|.++++.+++.+|+.+..    + 
T Consensus       225 ~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~----~-  299 (960)
T 1wa5_C          225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTS----I-  299 (960)
T ss_dssp             HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH----C-
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-
Confidence            6778999999999999874331  11   1   12689999999999999999999999999999988887653    1 


Q ss_pred             HhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHHH--HhHHHHHH-HHHHhhcCCHHHHHHHhhCH
Q 046316          278 RSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIA--SNVRELVY-HTIAFLQMTEQQIHIWSIDA  354 (966)
Q Consensus       278 ~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l~--~~l~~li~-~li~~~~lt~ed~e~w~~Dp  354 (966)
                          ..       .       ...++++.++++||.++++.+..++.++  +++..++. .++|+|+++++|++.|++||
T Consensus       300 ----~~-------~-------~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp  361 (960)
T 1wa5_C          300 ----SN-------Q-------PKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP  361 (960)
T ss_dssp             ----CS-------C-------TTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH
T ss_pred             ----CC-------C-------cCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH
Confidence                00       0       1127899999999999999888887876  89999995 55599999999999999999


Q ss_pred             HHHhhccc--CCccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHH
Q 046316          355 NQFLADED--ESTYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLL  432 (966)
Q Consensus       355 ~~fv~de~--d~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~  432 (966)
                      ++|++++.  ++.+|+|.+|.++|..++.++++.+++.+++++.+.++++.+.+    ..+|+.||||++++|+++++..
T Consensus       362 ~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~----~~~w~~reaal~algaia~~~~  437 (960)
T 1wa5_C          362 IEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP----SKNWKFKDLYIYLFTALAINGN  437 (960)
T ss_dssp             HHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHBSSC
T ss_pred             HHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCc----chhHHHHHHHHHHHHHHHHHhc
Confidence            99998654  35689999999999999999998899999999999998764321    2369999999999999976421


Q ss_pred             HhHhcCC----ccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehh
Q 046316          433 EAEVSGL----TSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVG  508 (966)
Q Consensus       433 ~~~~~~~----~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~  508 (966)
                      .... +.    ..+++.+|+.+++.|.++...+.+|+||+||||++|+|+++++++.+.++++.++++|. +.+.+||.+
T Consensus       438 ~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~-d~~~~V~~~  515 (960)
T 1wa5_C          438 ITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ-TDEYVVYTY  515 (960)
T ss_dssp             CBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTT-CSCHHHHHH
T ss_pred             cccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhC-CCChhHHHH
Confidence            1110 11    12378999999999999821123999999999999999999988899999999999987 447899999


Q ss_pred             HHHHHHhhcccC----------CCCCccccHHHHHHHHHHHHhhc--------ChhhHHHHHHHHHHHHhhcchhhcccc
Q 046316          509 ACRALSELLPKA----------NKGNFQPQMMGLFSSLADLLHQA--------RDETLHLVLETLQAAIKAGFLTASMEP  570 (966)
Q Consensus       509 A~~al~~~~~~~----------~~~~l~p~l~~il~~L~~ll~~~--------~~d~l~~~le~l~~~i~~~~~~~~~~~  570 (966)
                      ||.|+.+|++..          .++.+.||++++++.|+.++++.        +.+.+..++..++...+.+ .. ++..
T Consensus       516 A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~-~~-p~~~  593 (960)
T 1wa5_C          516 AAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS-IQ-PLFP  593 (960)
T ss_dssp             HHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT-TG-GGHH
T ss_pred             HHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHh-hh-hHHH
Confidence            999999999741          24669999999999999999986        4455555555555555432 22 3555


Q ss_pred             cchHHHHHHHHhh---cCChhHHHHHHHHHHHHHcC--CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhh
Q 046316          571 MISPLILNIWALH---VSDPFISIDAIEVLEAIKCS--PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLK  645 (966)
Q Consensus       571 ~l~p~~l~l~~~~---~~d~~~~~~~~~~l~~l~~~--~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~  645 (966)
                      .+++.+..+|.+.   ..|+.++..+.+|+..+...  |+.+.++++.++|++..++++...   ++...++++++.+++
T Consensus       594 ~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~---~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          594 QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQ---EFIPYVFQIIAFVVE  670 (960)
T ss_dssp             HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCT---TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhH---hhHHHHHHHHHHHHH
Confidence            6778777777654   45677787888999888854  678999999999999999987643   467788888888887


Q ss_pred             cCChhHHHHHHHHHhHHHH--HHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCc
Q 046316          646 SASTDVVKAAYDVCFDAVI--RIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESS  723 (966)
Q Consensus       646 ~~~~~l~~~~~~~~fp~l~--~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~  723 (966)
                      .. .++++. +..+||.+.  ..+.. .  +++..+.++|.+|+..++++|.+        ++.+++++.+++.....+ 
T Consensus       671 ~~-~~~~~~-~~~~~~~l~~~~~~~~-~--~~~~~~~~~L~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~~-  736 (960)
T 1wa5_C          671 QS-ATIPES-IKPLAQPLLAPNVWEL-K--GNIPAVTRLLKSFIKTDSSIFPD--------LVPVLGIFQRLIASKAYE-  736 (960)
T ss_dssp             HC-SSCCTT-TGGGHHHHTSGGGGCC-T--TTHHHHHHHHHHHHHHHGGGCSC--------SHHHHHHHHHHHTCTTTH-
T ss_pred             hc-cCCCHH-HHHHHHHHcCHHHhcC-C--CCchhHHHHHHHHHHhChHHHHH--------HHHHHHHHHHHhCCCccc-
Confidence            65 233332 233477777  54432 2  37888899999999998877752        567888888887654332 


Q ss_pred             cccchHHHHHHHHHhCChh-hhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhcCCCHHHHHHHhhcCCCCCCc
Q 046316          724 GSLFVGSYILQLILHLPSQ-MAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLV-HMSAPNVEWFINMLMTIPSEGYG  801 (966)
Q Consensus       724 ~~~~vg~Lv~~li~~~~~~-l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~-~~~~~~~~~~l~~L~~i~~~~~~  801 (966)
                        ..++.++..++.+++++ +.||++.++..++.+|+..++..+++.++..++.++ .+   +|+.+++.|.+++.+   
T Consensus       737 --~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~i~~~---  808 (960)
T 1wa5_C          737 --VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKL---GSDFLIHFIDEVQDG---  808 (960)
T ss_dssp             --HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHH---CHHHHHHHHHTTSTT---
T ss_pred             --chHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHc---CHHHHHHHHHhcchh---
Confidence              46788999999999998 899999999999999998888888888887777764 45   889999999876521   


Q ss_pred             CcHHHHHHHHhcccccccccchhHHHHHHHHHHHccC
Q 046316          802 NSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTR  838 (966)
Q Consensus       802 ~~L~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~~~  838 (966)
                      .....+++.||.+..++.|.++||++++|||+|+..+
T Consensus       809 ~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~  845 (960)
T 1wa5_C          809 LFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVING  845 (960)
T ss_dssp             HHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcc
Confidence            2355677899999999999999999999999999988
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 966
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 2e-68
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 3e-41
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 1e-28
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 2e-27
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 8e-18
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  244 bits (624), Expect = 2e-68
 Identities = 111/978 (11%), Positives = 293/978 (29%), Gaps = 146/978 (14%)

Query: 11  DQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVL 48
           D + +   L+ ++  +      +E +L Q   Q                        A+ 
Sbjct: 3   DLETVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALF 60

Query: 49  LKHFIKKHWQEGEESFELPAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDW 108
            K+FIK+ W +   +  LPA      E+I+K ++  +      +   I  A++SIA  D+
Sbjct: 61  FKNFIKRKWVDENGNHLLPA---NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF 117

Query: 109 PEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALL--------SADLDDAIVPKLVPVLFP 160
           P+ WP LL  L   ++   +M    G L     +         +D     +  ++ V   
Sbjct: 118 PDRWPTLLSDLASRLS-NDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTA 176

Query: 161 VLHTIVS--FPESYDRYVRTKALSIVYS-CTAMLGVMSGVCKTEMFALMMPMLKPWMNHF 217
               ++     +         +L+I++     ++ +       ++       ++  M  F
Sbjct: 177 PFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIF 236

Query: 218 SIILEHPVQPEDPDDWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYT 277
              L +     +  D      VL  +   IQ    L  + +  V   +   F+       
Sbjct: 237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFI------- 289

Query: 278 RSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVIAS--NVRELVYH 335
                           S   +   D  V +   FL  +    K  ++  +   +  +   
Sbjct: 290 --------QITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQ 341

Query: 336 TI-AFLQMTEQQIHIWSIDANQFLADED--ESTYSCRVSGALLLEEVVSYCGREGIDAII 392
            I   + + E+ + ++  D  +++  +     T + R +    L+E+         +  +
Sbjct: 342 IILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFL 401

Query: 393 DAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLLEAEVSGLTS---VRLGELLE 449
                  ++   + +      W+ ++  ++    L+           ++   + + +   
Sbjct: 402 AHMKGFVDQYMSDPSK----NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT 457

Query: 450 QMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGA 509
           + I  D+ +    +  L       +  F + ++   L   +    T +       V   A
Sbjct: 458 KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ-TDEYVVYTYA 516

Query: 510 CRALSELL----------PKANKGNFQPQMMGLFSSLADLLHQARDETLHL-----VLET 554
              + ++L             +K +       L  +L  L+ +       L     ++ +
Sbjct: 517 AITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS 576

Query: 555 LQAAI-KAGFLTASMEPMISPLILNIWALHVSDPFISIDAIEVLEAIK-----CSPGCIH 608
           +   +  +      + P +    + I  +   +P          E+I           + 
Sbjct: 577 IFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP 636

Query: 609 QLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSASTDVVKAAYDVCFDAVIRIIL 668
            L   ++P    +     +     +     ++  +++ ++T  +  +       ++   +
Sbjct: 637 LLVDSMMPTFLTVF---SEDIQEFIPYVFQIIAFVVEQSAT--IPESIKPLAQPLLAPNV 691

Query: 669 QSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGSLFV 728
             E    +   T  L +FI     +           +  +L    RL+           +
Sbjct: 692 W-ELKGNIPAVTRLLKSFIKTDSSIFP--------DLVPVLGIFQRLIASKAYEVHGFDL 742

Query: 729 GSYILQLILHLPSQ-MAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEW 787
              +  ++L +    +  +I+ +   L++RLQ+++       L + F  + +    +   
Sbjct: 743 ---LEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDF-- 797

Query: 788 FINMLMTIPSEGYGNSFVYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRHPELAKINV 847
            I+ +  +    +   +    +        I      K+    +  ++            
Sbjct: 798 LIHFIDEVQDGLFQQIW---GNFIITTLPTIGNLLDRKIALIGVLNMVI----------- 843

Query: 848 QGHLIKSDAGITTRAKAKLAPDQWTVLPLPAKILTLLADALIEIQEQVLGDD---DEEDS 904
                                +          +++   +++IE        +   D  D 
Sbjct: 844 ---------------------NGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDL 882

Query: 905 DWEEVQEGDVESDKDLIY 922
           D  E           L+ 
Sbjct: 883 DNLEEISTFGSHFSKLVS 900
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query966
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.64
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.6
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.4
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.4
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.34
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.32
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.27
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.72
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 98.61
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.59
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.38
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.85
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.71
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.66
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.36
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.18
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.14
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.06
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.66
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 96.12
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 96.12
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 95.9
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 94.35
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 90.13
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 89.5
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 89.0
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 88.68
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 88.43
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-63  Score=629.77  Aligned_cols=762  Identities=13%  Similarity=0.190  Sum_probs=591.4

Q ss_pred             cCCHHHHHHHHHHhcCCCHHHhHHHHHHHHhhccCc----------------------HHHHHHHHhhhccccccccccC
Q 046316            9 DQDQQWLLNCLSATLDPNQEVRSFAEVSLNQASLQP----------------------AAVLLKHFIKKHWQEGEESFEL   66 (966)
Q Consensus         9 ~~~~~~l~~~L~~~ls~d~~~R~~AE~~L~~~~~~p----------------------A~i~LKn~I~~~W~~~~~~~~~   66 (966)
                      |.|.++|.++|+++++|  ++||+||++|++++++|                      |+|+|||+|++||++..+   +
T Consensus         1 ~~d~~~l~~ll~~s~~~--~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~---~   75 (959)
T d1wa5c_           1 MSDLETVAKFLAESVIA--STAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG---N   75 (959)
T ss_dssp             CCHHHHHHHHHHHTTSG--GGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS---C
T ss_pred             CCcHHHHHHHHHHCCCh--HHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc---c
Confidence            56789999999998877  48999999999999998                      899999999999986544   3


Q ss_pred             CCCChHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHhcccCchhhHhHHHHHHHHHHhhc
Q 046316           67 PAVSSEEKEVIRKLLLSSLDDTHRKICTAISMAVASIAAYDWPEDWPDLLPFLLKLITDQSNMNGVHGGLRCLALLSADL  146 (966)
Q Consensus        67 ~~i~~~~K~~IR~~Ll~~L~~~~~kIr~~~a~~Is~Ia~~D~P~~WP~Ll~~L~~~l~s~~~~~~~~~aL~~L~~l~~~l  146 (966)
                      +.+++++|+.||+.|+++|.+++++||+++|.+|+.||++|||++||+|++.|++.++++ ++..++++|.+|+.+++++
T Consensus        76 ~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~-~~~~~~~~L~~l~~i~k~~  154 (959)
T d1wa5c_          76 HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFKRW  154 (959)
T ss_dssp             BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999999999999999999999999999999999999884 8899999999999999876


Q ss_pred             ccc--------chhhhhhhHHHHHHHHhcC-------CCCCcHHH------HHHHHHHHHHHHHHHHhhhccchhHHHHh
Q 046316          147 DDA--------IVPKLVPVLFPVLHTIVSF-------PESYDRYV------RTKALSIVYSCTAMLGVMSGVCKTEMFAL  205 (966)
Q Consensus       147 ~~~--------~~~~i~~~l~p~L~~i~~~-------~~~~~~~~------r~~al~i~~~~~~~l~~~~~~~~~~~~~~  205 (966)
                      ...        .+..+...+++.+..++..       ........      ...++++|+...          ....+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  224 (959)
T d1wa5c_         155 RPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFN----------CQDIPEF  224 (959)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHH----------SSCCCHH
T ss_pred             HhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH----------hhcchHH
Confidence            421        2234455555555555531       11111111      111222222211          1123466


Q ss_pred             hHhhhHHHHHHHHHHhcCCCCCC-CC------C-hhhHHHHHHHHHHHHHHhcchhhHHhhHHHHHHHHHHHHHhHHHHH
Q 046316          206 MMPMLKPWMNHFSIILEHPVQPE-DP------D-DWGVKMEVLKCLNQFIQNFPSLAESEFLVVVRSLWQTFVSSLRVYT  277 (966)
Q Consensus       206 ~~~~l~~w~~~~~~~L~~~~~~~-d~------~-~~~lk~~~~~~L~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~y~  277 (966)
                      +.+.++.|++.|..+++.+.+.. +.      . ..++|+++++++..+.++|++.+.+++..++..+|+.+...     
T Consensus       225 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----  299 (959)
T d1wa5c_         225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSI-----  299 (959)
T ss_dssp             HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            78899999999999998765421 11      1 14799999999999999999999999999988888766541     


Q ss_pred             HhhccCCCCCCCCCcCCCCCccchHHHHHHHHHHHHHHhcChhHHHHH--HHhHHHHHHHHH-HhhcCCHHHHHHHhhCH
Q 046316          278 RSSIEGTEDPYAGRYDSDGAEKSLDSFVIQLFEFLLTIVGSAKLVKVI--ASNVRELVYHTI-AFLQMTEQQIHIWSIDA  354 (966)
Q Consensus       278 ~~~i~~~~~~~~~~~d~~g~~~~~~~l~~~~~efl~~~~~~~~~~~~l--~~~l~~li~~li-~~~~lt~ed~e~w~~Dp  354 (966)
                          ..         .     ...+.++..+++|+..+++.+.++..+  .+++..++..++ ++++++++|.+.|++||
T Consensus       300 ----~~---------~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp  361 (959)
T d1wa5c_         300 ----SN---------Q-----PKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP  361 (959)
T ss_dssp             ----CS---------C-----TTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH
T ss_pred             ----hc---------c-----cccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcch
Confidence                10         0     112689999999999999988777665  377888998888 99999999999999999


Q ss_pred             HHHhhcccC--CccchhhHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhHHHHH
Q 046316          355 NQFLADEDE--STYSCRVSGALLLEEVVSYCGREGIDAIIDAASKRFNESQQEKAAGSTVWWRMREATLFALAFLSEQLL  432 (966)
Q Consensus       355 ~~fv~de~d--~~~s~R~aa~~lL~~L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~w~~rEaaL~alg~l~~~l~  432 (966)
                      ++|++++.+  +.+++|.+|.+++..+++++++...+.+..++.+.+++....    ...+|+.||++++++|+++....
T Consensus       362 ~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~e~~~~~~~al~~~~~  437 (959)
T d1wa5c_         362 IEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSD----PSKNWKFKDLYIYLFTALAINGN  437 (959)
T ss_dssp             HHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHBSSC
T ss_pred             HHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccC----CccchHHHHHHHHHHHHHHhhhh
Confidence            999987654  469999999999999999999988888999998888765332    23479999999999999864210


Q ss_pred             HhHhc---CCccccHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhhhhcChhHHHHHHHHHHhhhcCCCCCcEehhH
Q 046316          433 EAEVS---GLTSVRLGELLEQMITEDIGTGVHQYPFLYARIFASVARFSSAISDGVLEHFLSAAITTIAMDVPPPVKVGA  509 (966)
Q Consensus       433 ~~~~~---~~~~~~~~~~l~~~i~~~l~~~~~~~~~Lr~Ra~~~l~~f~~~~~~~~~~~~l~~~~~~L~~~~~~~Vr~~A  509 (966)
                      -....   .....++.+++.+++.|.+.....+++++|+|++|++|+|++...++...++++.++++|. +.+.+||..|
T Consensus       438 ~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~V~~~a  516 (959)
T d1wa5c_         438 ITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ-TDEYVVYTYA  516 (959)
T ss_dssp             CBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred             hhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhC-CCchhHHHHH
Confidence            00000   0122568999999999998755567899999999999999999888889999999999997 4478999999


Q ss_pred             HHHHHhhcccC----------CCCCccccHHHHHHHHHHHHhhcChhhH-----HHHHHHHHHHHhhcc-hhhcccccch
Q 046316          510 CRALSELLPKA----------NKGNFQPQMMGLFSSLADLLHQARDETL-----HLVLETLQAAIKAGF-LTASMEPMIS  573 (966)
Q Consensus       510 ~~al~~~~~~~----------~~~~l~p~l~~il~~L~~ll~~~~~d~l-----~~~le~l~~~i~~~~-~~~~~~~~l~  573 (966)
                      +.|+..+++..          ..+.+.|+++++++.++..+.+......     ..+++++..++.... ...++...++
T Consensus       517 ~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~  596 (959)
T d1wa5c_         517 AITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLL  596 (959)
T ss_dssp             HHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHH
T ss_pred             HHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998742          1256899999999999999977654321     235666655554433 3344556677


Q ss_pred             HHHHHHHHhhcC---ChhHHHHHHHHHHHHHcC--CCcHHHHHHhhhcchHhhhcCCCCCCchhhHHHHHHHHHHhhcCC
Q 046316          574 PLILNIWALHVS---DPFISIDAIEVLEAIKCS--PGCIHQLASRILPYVGPILNNPQQQPDGLVAGSLDLLTMLLKSAS  648 (966)
Q Consensus       574 p~~l~l~~~~~~---d~~~~~~~~~~l~~l~~~--~~~~~~l~~~~lP~l~~~l~~~~~~~~~~~~~al~ll~~l~~~~~  648 (966)
                      +.+..+|.+..+   ++.....+.+++..+.+.  |+.+..+++.++|.+..+++.+..   ++...++++++.++++.+
T Consensus       597 ~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~---~~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         597 AQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQ---EFIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCT---TTHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccch---hHHHHHHHHHHHHHHhCC
Confidence            888888766544   456777788888888743  778999999999999999986543   467789999999998765


Q ss_pred             ---hhHHHHHHHHHhHHHHHHHhccCchHHhhhhHHHHHHHHhcCccceeeeccCCcchHHHHHHHHHhhcCCCCCCccc
Q 046316          649 ---TDVVKAAYDVCFDAVIRIILQSEDHSEMQNATECLATFISGGRQLMLVWGGDSGFTMRSLLDAASRLLNPDLESSGS  725 (966)
Q Consensus       649 ---~~l~~~~~~~~fp~l~~~l~~s~d~~~lq~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~il~i~~~lL~~~~~~~~~  725 (966)
                         +.+++     +|++++..... ...+.++.+..++.+|+.++++.+.        +...+++++.+++++...+.  
T Consensus       674 ~~~~~~~~-----l~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~l~~~~~~l~~~~~~~--  737 (959)
T d1wa5c_         674 TIPESIKP-----LAQPLLAPNVW-ELKGNIPAVTRLLKSFIKTDSSIFP--------DLVPVLGIFQRLIASKAYEV--  737 (959)
T ss_dssp             SCCTTTGG-----GHHHHTSGGGG-CCTTTHHHHHHHHHHHHHHHGGGCS--------CSHHHHHHHHHHHTCTTTHH--
T ss_pred             CccHHHHH-----HHHHHhhHHHH-HHhhhHHHHHHHHHHHHHhCHHhhc--------chHHHHHHHHHHHCCCcchH--
Confidence               34444     36666655443 3345688899999999999887664        24568888998887654443  


Q ss_pred             cchHHHHHHHHHhCChh-hhHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcCCCCCCcCcH
Q 046316          726 LFVGSYILQLILHLPSQ-MAQHIRDLVAALVRRLQSAQIAGLRSSLLLIFARLVHMSAPNVEWFINMLMTIPSEGYGNSF  804 (966)
Q Consensus       726 ~~vg~Lv~~li~~~~~~-l~~~l~~iL~a~~~rL~~~~~~~~~~~li~vfa~l~~~~~~~~~~~l~~L~~i~~~~~~~~L  804 (966)
                       .+..++..++.+++.+ +.++++.++++++.||...+++.+.++++.++++++.+.  +|+.++++|++++.+   ...
T Consensus       738 -~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~---~~~  811 (959)
T d1wa5c_         738 -HGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKL--GSDFLIHFIDEVQDG---LFQ  811 (959)
T ss_dssp             -HHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHH--CHHHHHHHHHTTSTT---HHH
T ss_pred             -HHHHHHHHHHHHCchhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc--CHHHHHHHHHHhchh---hHH
Confidence             3567899999999876 689999999999999999889999999999999996532  899999999876543   234


Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHHHHHccCC
Q 046316          805 VYVMSEWTKLQGEIQGAYPIKVTTTALALLLSTRH  839 (966)
Q Consensus       805 ~~vl~~W~~~~~~~~g~~~~K~~~laL~~Ll~~~d  839 (966)
                      ..+...|+++++.+.|.++||++++|+++|+..+.
T Consensus       812 ~~~~~~~~~~~~~~~~~~~~k~~~l~l~~ll~~~~  846 (959)
T d1wa5c_         812 QIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQ  846 (959)
T ss_dssp             HHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHhcCCh
Confidence            45777799999999999999999999999997653
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure