Citrus Sinensis ID: 046324

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWFD
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHccccHHHHHcccccccccEEEEEEcccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccEEEEEcEEEEEEccccccccccHHccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHccccHHHHHHccccccccEEEEEcccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
lysyfqgnndqsakitmtapvltniipsingpfcnsqlqahpiklpkhkyVVVRRfgdfmddnsiSTQASALKKSLKNSTWESAIIFNnkisddhlsvagynspfqnenrinevLLWFD
Flexible Loop (DISEMBL)
lysyfqgnndqsakITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAgynspfqnenrinevLLWFD
Low Complexity Region (SEG)
LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWFD
Disordered region (IsUnstruct)
**************ITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGDFMDDNS***********LKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWF*
Disordered Region (DISOPRED)
LYSYFQGNNDQSAKITMTAPVLTNIIP********************HKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWFD
Disordered Region (DISEMBL)
********NDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWFD
Disordered Region (DISPRO)
LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWFD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q9Y5Z4	205	Heme-binding protein 2 OS	yes	no	0.899	0.521	0.325	3e-05
Q9WU63	205	Heme-binding protein 2 OS	yes	no	0.899	0.521	0.311	7e-05

>sp|Q9Y5Z4|HEBP2_HUMAN Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 28/135 (20%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 42
           L SY QG N++  KI MTAPV + + P  +GPF  S +          Q  P        
Sbjct: 69  LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 127

Query: 43  -IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGY 101
            I+      V VR F  F        Q   L   L+    E   +F+ K+       AGY
Sbjct: 128 FIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILR----EDGKVFDEKV----YYTAGY 179

Query: 102 NSPFQNENRINEVLL 116
           NSP +  NR NEV L
Sbjct: 180 NSPVKLLNRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin.
Homo sapiens (taxid: 9606)

>sp|Q9WU63|HEBP2_MOUSE Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 55/135 (40%), Gaps = 28/135 (20%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 42
           L  Y QG N++  KI +TAPV + + P  + PF  S +          Q  P        
Sbjct: 69  LNGYIQGKNEKEMKIKLTAPVTSYVEPG-SSPFSESTITISLYIPSEQQPDPPRPSESDV 127

Query: 43  -IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGY 101
            I+      V VR F  F        Q   L   L+    E   +FN K+       AGY
Sbjct: 128 FIEDRAEMTVFVRSFDGFSSGQKNQEQLLTLANILR----EEGKVFNEKV----FYTAGY 179

Query: 102 NSPFQNENRINEVLL 116
           +SPFQ  +R NEV L
Sbjct: 180 SSPFQLLDRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin (By similarity). May have low affinity for heme.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
225425256	216	PREDICTED: heme-binding protein 2-like [	0.974	0.537	0.554	7e-35
296085522	159	unnamed protein product [Vitis vinifera]	0.974	0.729	0.554	1e-34
224053561	229	predicted protein [Populus trichocarpa]	0.974	0.506	0.453	1e-25
388493350	227	unknown [Medicago truncatula]	0.991	0.519	0.386	8e-18
15220033	232	SOUL heme-binding protein [Arabidopsis t	0.991	0.508	0.385	4e-17
351723865	234	uncharacterized protein LOC100305993 pre	0.991	0.504	0.369	5e-17
356498208	234	PREDICTED: heme-binding protein 2-like [	0.991	0.504	0.362	9e-17
224061347	226	predicted protein [Populus trichocarpa]	0.983	0.517	0.377	9e-17
255578538	234	Heme-binding protein, putative [Ricinus	0.991	0.504	0.359	1e-16
116783597	269	unknown [Picea sitchensis] gi|116793236|	0.983	0.434	0.369	1e-16

>gi|225425256|ref|XP_002269974.1| PREDICTED: heme-binding protein 2-like [Vitis vinifera]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 92/137 (67%), Gaps = 21/137 (15%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL------------------QAHP 42
           L++Y QGNNDQ AKI MTAPVL +I PS  GPFCNS                    QAH 
Sbjct: 81  LFAYIQGNNDQRAKIDMTAPVLVDIFPS-TGPFCNSSFIMYFYVPTKYQNNPPLSAQAHQ 139

Query: 43  IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYN 102
           +KLPKHKY  VRRFG FMDD++I TQA AL++SLK + WE++I   N++     SVAGYN
Sbjct: 140 VKLPKHKYAAVRRFGGFMDDSNIPTQALALRRSLKGTPWETSISTKNRVLT--YSVAGYN 197

Query: 103 SPFQNENRINEVLLWFD 119
           SPF+ ENR+NEV+ WFD
Sbjct: 198 SPFEYENRVNEVIFWFD 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085522|emb|CBI29254.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 92/137 (67%), Gaps = 21/137 (15%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL------------------QAHP 42
           L++Y QGNNDQ AKI MTAPVL +I PS  GPFCNS                    QAH 
Sbjct: 24  LFAYIQGNNDQRAKIDMTAPVLVDIFPS-TGPFCNSSFIMYFYVPTKYQNNPPLSAQAHQ 82

Query: 43  IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYN 102
           +KLPKHKY  VRRFG FMDD++I TQA AL++SLK + WE++I   N++     SVAGYN
Sbjct: 83  VKLPKHKYAAVRRFGGFMDDSNIPTQALALRRSLKGTPWETSISTKNRVLT--YSVAGYN 140

Query: 103 SPFQNENRINEVLLWFD 119
           SPF+ ENR+NEV+ WFD
Sbjct: 141 SPFEYENRVNEVIFWFD 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053561|ref|XP_002297873.1| predicted protein [Populus trichocarpa] gi|222845131|gb|EEE82678.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 79/139 (56%), Gaps = 23/139 (16%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSI--------------------NGPFCNSQLQA 40
           L +Y QGNNDQ+A I MTAPVL ++  S                     N P      Q 
Sbjct: 94  LATYIQGNNDQAANINMTAPVLVDMFSSTASSRNTTFTVHLYLPQKYQNNPPLSR---QV 150

Query: 41  HPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAG 100
           HP+KLPKH++  V+RFG FM+D +I  Q  ALKKSL+ + WES+I           SVAG
Sbjct: 151 HPVKLPKHRHAAVKRFGGFMNDTNIPGQVLALKKSLEGTPWESSIARTQSRGRVPCSVAG 210

Query: 101 YNSPFQNENRINEVLLWFD 119
           YNSP++ ENR NEV+ WFD
Sbjct: 211 YNSPYEYENRANEVMFWFD 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493350|gb|AFK34741.1| unknown [Medicago truncatula]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 19/137 (13%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------I 43
           L+ Y QG N+   KI MTAPVL+ ++PS +GPFC S            QA+P       +
Sbjct: 84  LFDYIQGKNNYQQKIEMTAPVLSEVLPS-DGPFCESSFVVSFYVPKVNQANPPPAKGLHV 142

Query: 44  KLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHL-SVAGYN 102
           +  K  Y  V++FG F+ D +I  +A+ALK S+  + W SAI  + +     + SVA YN
Sbjct: 143 QRWKTVYAAVKQFGGFVKDTNIGEEAAALKDSIAGTKWSSAIEQSRRAGHASVYSVAQYN 202

Query: 103 SPFQNENRINEVLLWFD 119
           +PF+ +NR+NE+   FD
Sbjct: 203 APFEYDNRVNEIWFLFD 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220033|ref|NP_173153.1| SOUL heme-binding protein [Arabidopsis thaliana] gi|5734756|gb|AAD50021.1|AC007651_16 Similar to SOUL Protein [Arabidopsis thaliana] gi|21592576|gb|AAM64525.1| SOUL-like protein [Arabidopsis thaliana] gi|88196741|gb|ABD43013.1| At1g17100 [Arabidopsis thaliana] gi|332191420|gb|AEE29541.1| SOUL heme-binding protein [Arabidopsis thaliana]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 75/140 (53%), Gaps = 22/140 (15%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQA--------HPIKLPKH---- 48
           L++Y QG N+   KI MTAPV++ + PS +GPFC S             P   P      
Sbjct: 91  LFAYIQGKNEYHQKIEMTAPVISQVSPS-DGPFCESSFTVSFYVPKKNQPDPAPSENLHI 149

Query: 49  -----KYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNK----ISDDHLSVA 99
                +YV VR+F  F+ D+SI  QA+AL  SLK + W +AI  + +     SD   +VA
Sbjct: 150 QKWNSRYVAVRQFSGFVSDDSIGEQAAALDSSLKGTAWANAIAKSKEDGGVGSDSAYTVA 209

Query: 100 GYNSPFQNENRINEVLLWFD 119
            YNSPF+   R+NE+ L F+
Sbjct: 210 QYNSPFEFSGRVNEIWLPFE 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723865|ref|NP_001236014.1| uncharacterized protein LOC100305993 precursor [Glycine max] gi|255627213|gb|ACU13951.1| unknown [Glycine max]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 20/138 (14%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------I 43
           L+ Y QG N+   KI MTAPV++ ++PS +GPFC S            QA+P       +
Sbjct: 90  LFDYIQGKNNYKQKIEMTAPVISEVLPS-DGPFCESSFVVSFDVPKENQANPPPAKGLQV 148

Query: 44  KLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDH--LSVAGY 101
           +  K  +V VR+FG F+ D+S+  +A+ALK S+  + W  A+  + K +      +VA Y
Sbjct: 149 QRWKTVFVAVRQFGGFVKDSSVGEEAAALKASIAGTKWADAVEKSQKRAGHASVYTVAQY 208

Query: 102 NSPFQNENRINEVLLWFD 119
           N+PF+  NR+NE+   FD
Sbjct: 209 NAPFEYVNRVNEIWFLFD 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498208|ref|XP_003517945.1| PREDICTED: heme-binding protein 2-like [Glycine max] gi|255640875|gb|ACU20720.1| unknown [Glycine max]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 20/138 (14%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------I 43
           L+ Y QG N+   KI MTAPV++ ++PS +GPFC S            QA+P       +
Sbjct: 90  LFDYIQGKNNYKQKIEMTAPVISEVLPS-DGPFCESSFVVSFYVPKENQANPPPAKGLHV 148

Query: 44  KLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDH--LSVAGY 101
           +  K  +  VR+FG F+ D+S+  +A+ALK S+  + W  A+  + K +      +VA Y
Sbjct: 149 QRWKTVFAAVRQFGGFVKDSSVGEEAAALKASIAGTKWADAVEKSQKRAGHASVYTVAQY 208

Query: 102 NSPFQNENRINEVLLWFD 119
           N+PF+ +NR+NE+   FD
Sbjct: 209 NAPFEYDNRVNEIWFLFD 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061347|ref|XP_002300435.1| predicted protein [Populus trichocarpa] gi|118487939|gb|ABK95791.1| unknown [Populus trichocarpa] gi|222847693|gb|EEE85240.1| predicted protein [Populus trichocarpa]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 18/135 (13%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------I 43
           L+ Y QG N    KI MTAPV+T + PS +GPFC S            QA+P       +
Sbjct: 84  LFDYIQGKNSYEEKIEMTAPVITEVSPS-DGPFCESSFTVSFYVPKENQANPPPAKGLHV 142

Query: 44  KLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNS 103
           +  +  YV VR+F  F+ D+++  +A+AL+ SL ++ W +AI  +   S    +VA YNS
Sbjct: 143 QRWQPTYVAVRQFNGFVTDSNVGEEAAALQASLADTIWAAAIEKSRPDSTTVYTVAQYNS 202

Query: 104 PFQNENRINEVLLWF 118
           PF+ +NR+NE+ + F
Sbjct: 203 PFEFDNRVNEIWMQF 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578538|ref|XP_002530132.1| Heme-binding protein, putative [Ricinus communis] gi|223530357|gb|EEF32248.1| Heme-binding protein, putative [Ricinus communis]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 21/139 (15%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------I 43
           L+ Y QG N    +I MTAPV+T ++PS +GPFC S            QA+P       +
Sbjct: 93  LFDYIQGKNSYGQQIEMTAPVITEVLPS-DGPFCESSFTVSFYIPKENQANPPPAKGLHV 151

Query: 44  KLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLS---VAG 100
           +  K  Y  VR+F  F+ D+++  +A+AL+ S+ ++ W +AI  ++  +D   S   VA 
Sbjct: 152 QRWKQTYAAVRQFSGFVTDSNVGEEAAALQASIADTKWAAAIEKSHDAADRTTSVYTVAQ 211

Query: 101 YNSPFQNENRINEVLLWFD 119
           YNSPF+ ++R+NE+ + FD
Sbjct: 212 YNSPFEFDSRVNEIWMLFD 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116783597|gb|ABK23013.1| unknown [Picea sitchensis] gi|116793236|gb|ABK26668.1| unknown [Picea sitchensis]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 32/149 (21%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNS----------QLQAHPIKLPKH-- 48
           L+ Y QG N + AK+ MTAPVLT I PS  GPFC S          + Q  P +  K   
Sbjct: 106 LFDYIQGQNTEQAKVPMTAPVLTGIFPS-RGPFCESSFVVSFYVPEKFQEKPPEAEKSLA 164

Query: 49  --------KYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFN-NKISDDH---- 95
                    Y  VRRFG ++ D++I  +A+ L+ SL ++ W  AI  +  +I++ H    
Sbjct: 165 LKAKKWDIVYAAVRRFGGYVTDSNIGEEAAKLQASLIDTPWADAISKSQQRIAEGHHDRE 224

Query: 96  ------LSVAGYNSPFQNENRINEVLLWF 118
                  SVA YNSPF+ +NR+NE+ + F
Sbjct: 225 GKDPSLFSVAQYNSPFEFKNRVNEIWMLF 253

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2020307	232	HBP1 "AT1G17100" [Arabidopsis	1.0	0.512	0.374	1.1e-14
TAIR|locus:2032055	219	AT1G78460 [Arabidopsis thalian	0.983	0.534	0.325	2.7e-08
UNIPROTKB|E1BFP1	205	HEBP2 "Uncharacterized protein	0.957	0.556	0.328	2.3e-07
UNIPROTKB|Q9Y5Z4	205	HEBP2 "Heme-binding protein 2"	0.957	0.556	0.335	4.1e-07
TAIR|locus:2032065	225	AT1G78450 "AT1G78450" [Arabido	0.974	0.515	0.270	5.8e-07
UNIPROTKB|F1S6A9	205	HEBP2 "Uncharacterized protein	0.957	0.556	0.320	9.2e-07
RGD|1311553	203	Hebp2 "heme binding protein 2"	0.932	0.546	0.312	2e-06
UNIPROTKB|E1BXL4	159	HEBP2 "Uncharacterized protein	0.899	0.672	0.310	2.1e-06
ZFIN|ZDB-GENE-040426-914	190	hebp2 "heme binding protein 2"	0.899	0.563	0.318	7.8e-06
UNIPROTKB|E2QYU6	200	HEBP2 "Uncharacterized protein	0.957	0.57	0.312	2.1e-05

TAIR|locus:2020307 HBP1 "AT1G17100" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 52/139 (37%), Positives = 75/139 (53%)

Query:     1 LYSYFQGNNDQSAKITMTAPVLTNIIPS----INGPFCNS-----QLQAHP-----IKLP 46
             L++Y QG N+   KI MTAPV++ + PS        F  S     + Q  P     + + 
Sbjct:    91 LFAYIQGKNEYHQKIEMTAPVISQVSPSDGPFCESSFTVSFYVPKKNQPDPAPSENLHIQ 150

Query:    47 K--HKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKI----SDDHLSVAG 100
             K   +YV VR+F  F+ D+SI  QA+AL  SLK + W +AI  + +     SD   +VA 
Sbjct:   151 KWNSRYVAVRQFSGFVSDDSIGEQAAALDSSLKGTAWANAIAKSKEDGGVGSDSAYTVAQ 210

Query:   101 YNSPFQNENRINEVLLWFD 119
             YNSPF+   R+NE+ L F+
Sbjct:   211 YNSPFEFSGRVNEIWLPFE 229

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2032055 AT1G78460 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 43/132 (32%), Positives = 67/132 (50%)

Query:     1 LYSYFQGNNDQSAKITMTAPVLTNIIP-------SINGPFCNSQL--QAHP--IKLPKHK 49
             L  Y +G+N  + K+ MTAPV+    P       S+  P  N Q   QA    ++  K  
Sbjct:    89 LNRYIEGDNKSNVKMNMTAPVIAQATPGRSVYTVSLYLPKKNQQNPPQADDLHVRSTKPT 148

Query:    50 YVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNN-KISDDHLSVAGYNSPFQNE 108
             YV VR+ G ++ +N    +A+AL +SL++S W   I  +  K+    L+V  YN P    
Sbjct:   149 YVAVRQIGGYVSNNVAKDEAAALMESLRDSNWILPIEKSKGKLPAYFLAV--YNPPSHTT 206

Query:   109 NR-INEVLLWFD 119
              R INE+++ F+
Sbjct:   207 ARVINEIMVPFN 218

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BFP1 HEBP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 119 (46.9 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 42/128 (32%), Positives = 63/128 (49%)

Query:     1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGD-- 58
             L SY QG N++  KI MTAPV + + P  +GPF  S +    + +P  +     R  +  
Sbjct:    69 LKSYLQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITIS-LYIPSEQQSDPPRPAESD 126

Query:    59 -FMDDNSISTQ--------ASALKKSLKNSTWESAIIFNNKISDDHLS-VAGYNSPFQNE 108
              F++D +  T         +SA K   +  T  S +    K+ D+ +   AGYNSPF+  
Sbjct:   127 VFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREEGKVFDEKVYYTAGYNSPFKLL 186

Query:   109 NRINEVLL 116
             +R NEV L
Sbjct:   187 DRNNEVWL 194

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9Y5Z4 HEBP2 "Heme-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 117 (46.2 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 43/128 (33%), Positives = 63/128 (49%)

Query:     1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRR--FGD 58
             L SY QG N++  KI MTAPV + + P  +GPF  S +    + +P  +     R    D
Sbjct:    69 LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITIS-LYIPSEQQFDPPRPLESD 126

Query:    59 -FMDDNSISTQ--------ASALKKSLKNSTWESAIIFNNKISDDHLS-VAGYNSPFQNE 108
              F++D +  T         +SA K   +  T  S +  + K+ D+ +   AGYNSP +  
Sbjct:   127 VFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEKVYYTAGYNSPVKLL 186

Query:   109 NRINEVLL 116
             NR NEV L
Sbjct:   187 NRNNEVWL 194

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2032065 AT1G78450 "AT1G78450" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 36/133 (27%), Positives = 61/133 (45%)

Query:     1 LYSYFQGNNDQSAKITMTAPVLTNIIPSIN----GPFCNSQLQAHP-------IKLPKHK 49
             L  Y  GNND   +I +  P +T +  +++      F     Q  P       ++    +
Sbjct:    80 LSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSR 139

Query:    50 YVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKI----SDDHLSVAGYNSPF 105
             YV V++   ++ D+ I  Q + LK SL+ + W  AI  + +     S    +VA ++ PF
Sbjct:   140 YVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPF 199

Query:   106 QNENRINEVLLWF 118
             Q   R+NE+  WF
Sbjct:   200 QWSQRVNEI--WF 210

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|F1S6A9 HEBP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 114 (45.2 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 41/128 (32%), Positives = 63/128 (49%)

Query:     1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGD-- 58
             L SY QG N++  KI MTAPV + + P  +GPF  S +    + +P  +     R  +  
Sbjct:    69 LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITIS-LYIPSEQQSDPPRPTESN 126

Query:    59 -FMDDNSISTQ--------ASALKKSLKNSTWESAIIFNNKISDDHLS-VAGYNSPFQNE 108
              F++D +  T         +SA K   +  T  S +    K+ D+ +   AGY+SPF+  
Sbjct:   127 VFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASVLREEGKVFDEKVYYTAGYSSPFELL 186

Query:   109 NRINEVLL 116
             +R NEV L
Sbjct:   187 DRNNEVWL 194

GO:0005737 "cytoplasm" evidence=IEA

RGD|1311553 Hebp2 "heme binding protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 111 (44.1 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 41/131 (31%), Positives = 59/131 (45%)

Query:     1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL---------QAHPIKLPKHKYV 51
             L  Y QG N++  KI +TAPV++ + P  +GPF  S +         Q H    P    V
Sbjct:    67 LNGYIQGKNEKEMKIKLTAPVMSFVEPG-SGPFSESTITISLYIPSEQQHDPPRPSESDV 125

Query:    52 VVRRFGDF-MDDNSISTQASALKK-----SLKNSTWESAIIFNNKISDDHLSVAGYNSPF 105
              +   G+  +   S    +S  K      +L N   E   +FN K+       AGY+SPF
Sbjct:   126 FIEDRGEMTVFVRSFDGFSSGQKNQEQLLTLANILREEGKVFNEKV----FYTAGYSSPF 181

Query:   106 QNENRINEVLL 116
             +  +R NEV L
Sbjct:   182 RLLDRNNEVWL 192

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|E1BXL4 HEBP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 41/132 (31%), Positives = 59/132 (44%)

Query:     1 LYSYFQGNNDQSAKITMTAPVLTNIIPS------ING--PFCNSQLQAHP------IKLP 46
             L+ Y QG N++  KI MT PV T ++ S      I+   PF +      P      ++  
Sbjct:    36 LFHYIQGKNEKEIKIDMTVPV-TCLVKSGCADFKISFFVPFEHQDSPPQPTDSDVFVEER 94

Query:    47 KHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQ 106
             K   + VR F  F   +  + +A AL K L+N              +D    AGY+SPF+
Sbjct:    95 KAAAIFVRSFSGFASPDKYAEEAEALAKLLRNR--------GQPFHEDFFYTAGYDSPFK 146

Query:   107 NENRINEVLLWF 118
               NR NEV  W+
Sbjct:   147 LFNRHNEV--WY 156

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-914 hebp2 "heme binding protein 2" [Danio rerio (taxid:7955)]

 Score = 105 (42.0 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 43/135 (31%), Positives = 56/135 (41%)

Query:     1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 42
             L+ Y QG+N++ +K+ MT PV   I P   GP C S            QA P        
Sbjct:    60 LFKYIQGSNEKKSKVEMTTPVSCLIDPGA-GPACESTFTVSFYIPEEHQADPPKPTDPDV 118

Query:    43 -IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGY 101
              I+  K     VR FG F +  S   +   L +SLK            K  +     AGY
Sbjct:   119 FIESRKELTAFVRTFGGFANSESCCEEILKLIESLKRD--------GMKFKEAPYYRAGY 170

Query:   102 NSPFQNENRINEVLL 116
             +SPF+   R NEV L
Sbjct:   171 DSPFKLTGRRNEVWL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E2QYU6 HEBP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 102 (41.0 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 40/128 (31%), Positives = 62/128 (48%)

Query:     1 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRR---FG 57
             L SY +G N++  KI MTAPV T+++   +GPF  S +    + +P  +     R    G
Sbjct:    64 LDSYMRGKNEREMKIKMTAPV-TSLVEPGSGPFSESIITIS-LYIPSEQQPDPPRPSESG 121

Query:    58 DFMDDNSISTQ--------ASALKKSLKNSTWESAIIFNNKISDDHLS-VAGYNSPFQNE 108
              F++D +  T         +SA K   +  T  S +    K+ ++ +   AGYNSPF   
Sbjct:   122 VFIEDRAEMTVFVRAFDGFSSAQKNQEQLLTLASILREEGKVFNEKVYYTAGYNSPFNLL 181

Query:   109 NRINEVLL 116
             +  NEV L
Sbjct:   182 DGNNEVWL 189

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006193001 SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (218 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	1e-17

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score = 73.4 bits (181), Expect = 1e-17
 Identities = 34/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGP----------FCNSQLQAHPIKLPKH-- 48
           L  Y  G N    KI MTAPVL   IP                  S  QA  +  P    
Sbjct: 47  LAGYIFGKNRSGEKIAMTAPVLQQAIPMTADEEGSGAWTVSFVMPSGYQAETLPAPLDPD 106

Query: 49  --------KYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAG 100
                   + V V RF     +  ++ +A+ L+  L+    +               +AG
Sbjct: 107 VRIREVPARTVAVIRFSGRASEEDVAEKAAELRAWLEADGLKPR---------GEPFLAG 157

Query: 101 YNSPF-QNENRINEVLL 116
           YN P+     R NEV +
Sbjct: 158 YNPPWTPPFLRRNEVWV 174

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
PRK10016	156	DNA gyrase inhibitor; Provisional	92.07
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	91.97
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	88.47
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	81.12

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=8.1e-36  Score=216.93  Aligned_cols=109  Identities=37%  Similarity=0.561  Sum_probs=82.5

Q ss_pred             CccccCCCCCCCCccCcCcceEEEecCCC--------CCCccccC------------CceeEEeCCCCcEEEEEEecccC
Q 046324            1 LYSYFQGNNDQSAKITMTAPVLTNIIPSI--------NGPFCNSQ------------LQAHPIKLPKHKYVVVRRFGDFM   60 (119)
Q Consensus         1 L~~YI~G~N~~~~ki~MT~PV~~~~~~~~--------~~~f~~p~------------~~V~i~~~p~~~~v~vr~F~G~~   60 (119)
                      |++||+|+|+++++|+||+||++++.+..        ..+|++|.            ++|+|++.| +.++||++|+|++
T Consensus        47 L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~~~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p-~~~~~v~~F~G~~  125 (176)
T PF04832_consen   47 LFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESCEKEYTMSFFLPSEYQAENPPKPTDPDVFIEEVP-ERTVYVRRFSGFA  125 (176)
T ss_dssp             HHHHHCT-CTT------BS-EEEEEEETTTTTCECEEEEEEE--HHHC-TS---BSSTTEEEEEC--SEEEEEEEECS--
T ss_pred             HHHHHhcCCcccceeeccCCEEEEEEcCCCcccCCcEEEEEEcCcccccccCCCCCCCeEEEEEec-CcEEEEEEECCcC
Confidence            78999999999999999999999994221        11566653            899999999 9999999999999


Q ss_pred             ChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCC-CCCeeeEEEEeC
Q 046324           61 DDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQN-ENRINEVLLWFD  119 (119)
Q Consensus        61 ~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~-~~R~NEVw~~~~  119 (119)
                      ++.++.+++++|+++|+++|+.         +.+.|++|+||+||++ ++|||||||++.
T Consensus       126 ~~~~~~~~~~~L~~~L~~~g~~---------~~~~~~~a~Yd~P~~~~~~R~NEV~i~v~  176 (176)
T PF04832_consen  126 TDEKIQEEAKKLRAALKKDGLK---------DKGYYYVAGYDPPFTPPFNRRNEVWIPVK  176 (176)
T ss_dssp             SHHHHHHHHHHHHHHCCCTTHH---------CCCEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred             CHHHHHHHHHHHHHHHHHcCCC---------cCCCeEEEEcCCCCCCccCcceEEEEecC
Confidence            9999999999999999999852         6789999999999665 999999999874

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=92.07  E-value=1.5  Score=30.49  Aligned_cols=54  Identities=6%  Similarity=0.017  Sum_probs=42.3

Q ss_pred             ceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCC
Q 046324           39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSP  104 (119)
Q Consensus        39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P  104 (119)
                      +|.|+++| +..++..+..|-..+ .+.+--.+|.+++.++|+.         .. ..+.-.||.|
T Consensus         2 ~v~i~~~~-~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~---------~~-~~~~i~~D~p   55 (156)
T PRK10016          2 NYEIKQEQ-KRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV---------PK-EWVAVYYDNP   55 (156)
T ss_pred             ceEEEEcc-CceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC---------CC-cEEEEECCCC
Confidence            68999999 898888888886543 3677888999999999852         22 3667788999

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=91.97  E-value=0.99  Score=32.56  Aligned_cols=57  Identities=14%  Similarity=0.029  Sum_probs=46.2

Q ss_pred             ceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCC
Q 046324           39 QAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQ  106 (119)
Q Consensus        39 ~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~  106 (119)
                      +|.|+++| +..|+..+=-|  ......+-.++|.++.+++|+-        ...+..+--.||+|-.
T Consensus         2 dv~I~e~p-~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~--------p~~S~~~gI~~ddP~~   58 (154)
T COG3449           2 DVEIIELP-PIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLL--------PEQSETLGIYQDDPDT   58 (154)
T ss_pred             CceEEecC-CceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCC--------CCCceEEEEecCCCCC
Confidence            78999999 89999988888  7788899999999999999852        2335566667788853

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=88.47  E-value=1.7  Score=28.77  Aligned_cols=69  Identities=14%  Similarity=0.075  Sum_probs=51.3

Q ss_pred             ceeEEeCCCCcEEEEEEecccCChhh-HHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCCCCCeeeEEE
Q 046324           39 QAHPIKLPKHKYVVVRRFGDFMDDNS-ISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLL  116 (119)
Q Consensus        39 ~V~i~~~p~~~~v~vr~F~G~~~~~~-~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw~  116 (119)
                      +|+|+++| +.+++..+..|-..+.. +.+..++|.+.+...+..        .....++..-||.|..........++
T Consensus         2 ~~~i~~~p-~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~   71 (155)
T PF06445_consen    2 EVEIVTLP-AFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS--------TDPGPIIGIYYDNPNITDDEEFRYDI   71 (155)
T ss_dssp             CEEEEEEE-EEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC--------CSSSSEEEEEEECCTSSTGCEEEEEE
T ss_pred             CcEEEEEC-CEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc--------cCCCcceeEEeccccccCCcceEEEE
Confidence            68999999 99999999999887777 888889999999887531        14556667778877543444454443

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=81.12  E-value=13  Score=24.38  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=48.9

Q ss_pred             CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHH-HhhcCCcchhhhhccccCCCceEEEEeCCCC-CCCCCeeeEE
Q 046324           38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKK-SLKNSTWESAIIFNNKISDDHLSVAGYNSPF-QNENRINEVL  115 (119)
Q Consensus        38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~-~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~-~~~~R~NEVw  115 (119)
                      ..+....+| +..+++-+|-|-.  +.+.+-...|.. +|.+.|+.       ......+.. -.+.|. ..-.-.=|||
T Consensus        83 ~~~~~~~ip-~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~-------~~~~~~~E~-y~~~~~~~~~~~~~ei~  151 (155)
T PF06445_consen   83 DGMESRTIP-AGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYE-------RRDGPDFEI-YLNDPDTDEEEYVTEIY  151 (155)
T ss_dssp             TTSEEEEEE-CEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCE-------EESSEEEEE-EESSTTTTSCGEEEEEE
T ss_pred             ceEEEEEEc-CcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCc-------cCCCCcEEE-ECCCCCCCCCceEEEEE
Confidence            888999999 8999999999977  677888899999 99999862       112222333 233333 2234455888


Q ss_pred             EEe
Q 046324          116 LWF  118 (119)
Q Consensus       116 ~~~  118 (119)
                      |++
T Consensus       152 iPi  154 (155)
T PF06445_consen  152 IPI  154 (155)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
4b0y_A	227	Determination Of X-Ray Structure Of Human Soul By M		2e-06
3r8j_A	212	Crystal Structure Of Human Soul Protein (Orthorhomb		2e-06

>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By Molecular Replacement Length = 227

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 42
           L SY QG N++  KI MTAPV + + P  +GPF  S +          Q  P        
Sbjct: 91  LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 149
Query: 43  -IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGY 101
            I+      V VR F  F        Q   L   L+    E   +F+ K+       AGY
Sbjct: 150 FIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILR----EDGKVFDEKV----YYTAGY 201
Query: 102 NSPFQNENRINEVLL 116
           NSP +  NR NEV L
Sbjct: 202 NSPVKLLNRNNEVWL 216

>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic Form) Length = 212

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 42
           L SY QG N++  KI MTAPV + + P  +GPF  S +          Q  P        
Sbjct: 72  LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 130
Query: 43  -IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGY 101
            I+      V VR F  F        Q   L   L+    E   +F+ K+       AGY
Sbjct: 131 FIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILR----EDGKVFDEKV----YYTAGY 182
Query: 102 NSPFQNENRINEVLL 116
           NSP +  NR NEV L
Sbjct: 183 NSPVKLLNRNNEVWL 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	2e-12
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	1e-10
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	3e-10

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score = 59.9 bits (144), Expect = 2e-12
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 26/134 (19%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCN------------------SQLQAHP 42
           +  Y  G ND+   + MT PV   + P+ +G                         ++  
Sbjct: 67  IMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVK 126

Query: 43  IKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYN 102
           I+  +   V   +FG +  +      A+ L+ +L+ +              D    AGY+
Sbjct: 127 IEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--------TYQGDVYYCAGYD 178

Query: 103 SPFQNENRINEVLL 116
            P +   R NEV L
Sbjct: 179 PPMKPYGRRNEVWL 192

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score = 55.3 bits (132), Expect = 1e-10
 Identities = 35/135 (25%), Positives = 46/135 (34%), Gaps = 26/135 (19%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPI----------------- 43
           L SY QG N++  KI MTAPV + + P       ++   +  I                 
Sbjct: 72  LNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVF 131

Query: 44  -KLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYN 102
            +      V VR F  F        Q   L   L+               +     AGYN
Sbjct: 132 IEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILRED--------GKVFDEKVYYTAGYN 183

Query: 103 SPFQNENRINEVLLW 117
           SP +  NR NEV L 
Sbjct: 184 SPVKLLNRNNEVWLI 198

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score = 54.5 bits (130), Expect = 3e-10
 Identities = 35/135 (25%), Positives = 46/135 (34%), Gaps = 26/135 (19%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPI----------------- 43
           L SY QG N++  KI MTAPV + + P       ++   +  I                 
Sbjct: 91  LNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVF 150

Query: 44  -KLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYN 102
            +      V VR F  F        Q   L   L+               +     AGYN
Sbjct: 151 IEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILRED--------GKVFDEKVYYTAGYN 202

Query: 103 SPFQNENRINEVLLW 117
           SP +  NR NEV L 
Sbjct: 203 SPVKLLNRNNEVWLI 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	95.52
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	95.41
3lur_A	158	Putative bacterial transcription regulation prote;	87.58
1d5y_A	292	ROB transcription factor; protein-DNA complex, DNA	87.09

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=4e-38  Score=234.89  Aligned_cols=109  Identities=31%  Similarity=0.361  Sum_probs=98.9

Q ss_pred             CccccCCCCCCCCccCcCcceEEEecCCCC--------CCccccC-----------CceeEEeCCCCcEEEEEEecccCC
Q 046324            1 LYSYFQGNNDQSAKITMTAPVLTNIIPSIN--------GPFCNSQ-----------LQAHPIKLPKHKYVVVRRFGDFMD   61 (119)
Q Consensus         1 L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~--------~~f~~p~-----------~~V~i~~~p~~~~v~vr~F~G~~~   61 (119)
                      ||+||+|+|.++++|+||+||++++.++..        .+|++|.           ++|+|+++| +++||||+|+||++
T Consensus        72 L~~YI~G~N~~~~kI~MTaPV~t~~~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p-~~~vav~~F~G~~~  150 (212)
T 3r8j_A           72 LNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRA-EMTVFVRSFDGFSS  150 (212)
T ss_dssp             HHHHHTTCBTTCCCCCCBSCEEEEEECTTSTTSCEEEEEEEECCHHHHSSCCCBSSTTEEEEEEC-CEEEEEEEESSCCC
T ss_pred             HHHHhhcCCCCCCccccccCEEEEEecCCCcccCceEEEEEEcChHHccCCCCCCCCceEEEEeC-CEEEEEEEeCCcCC
Confidence            789999999999999999999999876621        1566663           899999999 99999999999999


Q ss_pred             hhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCCCCCeeeEEEEe
Q 046324           62 DNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWF  118 (119)
Q Consensus        62 ~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw~~~  118 (119)
                      ++++.+++++|+++|+++|+        .+..+.|++|+|||||++++|||||||++
T Consensus       151 ~~~~~~~~~~L~~~L~~~g~--------~~~~~~y~~A~Yd~P~t~~~RrNEVwi~~  199 (212)
T 3r8j_A          151 AQKNQEQLLTLASILREDGK--------VFDEKVYYTAGYNSPVKLLNRNNEVWLIQ  199 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC--------CBCSSCEEEEESSSSSCCSSSCEEEEEEB
T ss_pred             HHHHHHHHHHHHHHHHhCCC--------ccCCCcEEEEEeCCCCCcCCceeEEEEEe
Confidence            99999999999999999985        36778899999999999999999999986

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=7.5e-38  Score=235.44  Aligned_cols=109  Identities=31%  Similarity=0.361  Sum_probs=95.7

Q ss_pred             CccccCCCCCCCCccCcCcceEEEecCCCC--------CCccccC-----------CceeEEeCCCCcEEEEEEecccCC
Q 046324            1 LYSYFQGNNDQSAKITMTAPVLTNIIPSIN--------GPFCNSQ-----------LQAHPIKLPKHKYVVVRRFGDFMD   61 (119)
Q Consensus         1 L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~--------~~f~~p~-----------~~V~i~~~p~~~~v~vr~F~G~~~   61 (119)
                      ||+||+|+|.++++|+||+||++++.++..        .+|++|.           ++|+|+++| +++||||+|+||++
T Consensus        91 L~~YI~G~N~~~~kI~MTaPV~t~~~p~~~~~~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p-~~~vaVr~FsG~~~  169 (227)
T 4b0y_A           91 LNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRA-EMTVFVRSFDGFSS  169 (227)
T ss_dssp             HHHHHHTCBTTCCCCCCBSCEEEEEECCC--CCCEEEEEEEECCGGGSSSCCCBSSSSEEEEEEC-CEEEEEEEESSCCC
T ss_pred             HHHHhhcCCCCCCccccccCEEEEEecCCCcccCceEEEEEEcChhhccCCCCCCCCceEEEEeC-CEEEEEEEecCcCC
Confidence            789999999999999999999999876621        1566664           899999999 99999999999999


Q ss_pred             hhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCCCCCeeeEEEEe
Q 046324           62 DNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWF  118 (119)
Q Consensus        62 ~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw~~~  118 (119)
                      ++++.+++++|+++|+++|+        .+..+.|++|+|||||++++|||||||+.
T Consensus       170 ~~~~~~~~~~L~~~L~~~g~--------~~~~~~y~~A~Yd~P~t~~~RrNEVwi~~  218 (227)
T 4b0y_A          170 AQKNQEQLLTLASILREDGK--------VFDEKVYYTAGYNSPVKLLNRNNEVWLIQ  218 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC--------CBCSSCEEEEECC---CCCSSCEEEEEEB
T ss_pred             HHHHHHHHHHHHHHHHhCCC--------ccCCCcEEEEEeCCCCCcCCceeEEEEEE
Confidence            99999999999999999985        36778899999999999999999999986

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=1.2e-37  Score=229.59  Aligned_cols=108  Identities=24%  Similarity=0.360  Sum_probs=97.8

Q ss_pred             CccccCCCCCCCCccCcCcceEEEecCCCCC---------CccccC-----------CceeEEeCCCCcEEEEEEecccC
Q 046324            1 LYSYFQGNNDQSAKITMTAPVLTNIIPSING---------PFCNSQ-----------LQAHPIKLPKHKYVVVRRFGDFM   60 (119)
Q Consensus         1 L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~---------~f~~p~-----------~~V~i~~~p~~~~v~vr~F~G~~   60 (119)
                      ||+||+|+|.++++|+||+||++++.+. ++         +|++|.           ++|+|+++| ++++||++|+|++
T Consensus        67 L~~YI~G~N~~~~kI~MTaPV~~~~~p~-~~~~~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p-~~~vav~~F~G~~  144 (195)
T 2gov_A           67 IMKYVGGTNDKGVGMGMTVPVSFAVFPN-EDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEERE-GITVYSTQFGGYA  144 (195)
T ss_dssp             HHHHHHTCBTTCCCCCCCCCEEEEEEEC-TTSCEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECC-SCEEEEEEEESCC
T ss_pred             HHHHhccCCCCCCCcccccCEEEEEcCC-CCCCcCceEEEEEEcchhcccCCCCCCCCceEEEEeC-CeEEEEEEECCcc
Confidence            7899999999999999999999988665 32         466664           899999999 9999999999999


Q ss_pred             ChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCCCCCeeeEEEEe
Q 046324           61 DDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWF  118 (119)
Q Consensus        61 ~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw~~~  118 (119)
                      ++.++.+++++|+++|+++|+        .+..+.|++|+|||||++++|||||||+.
T Consensus       145 ~~~~~~~~~~~L~~~L~~~g~--------~~~~~~~~~a~Yn~P~~~~~RrNEV~i~~  194 (195)
T 2gov_A          145 KEADYVAHATQLRTTLEGTPA--------TYQGDVYYCAGYDPPMKPYGRRNEVWLVK  194 (195)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSC--------CEEEEEEEEEESSCCSSSSCCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHCCC--------cccCCcEEEEEeCCCCCcCCceeEEEEEe
Confidence            999999999999999999985        25667899999999999999999999985

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=95.52  E-value=0.056  Score=36.27  Aligned_cols=69  Identities=13%  Similarity=0.082  Sum_probs=50.9

Q ss_pred             CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCC-C-CCCeeeEE
Q 046324           38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQ-N-ENRINEVL  115 (119)
Q Consensus        38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~-~-~~R~NEVw  115 (119)
                      ..+.+..+| +.++++.++.|-..+  +.+--.+|.++|.++|+.        .. +..+-.-+|+|.. . -..+.|||
T Consensus        85 ~~~~~~~ip-~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~--------~~-~~~~E~Y~~~p~~~~~~~~~tei~  152 (158)
T 3e0h_A           85 GRVVTGLTP-SGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD--------LS-GEAYEIYLDNPAETAPDQLRTRVS  152 (158)
T ss_dssp             TTBEEEECC-CEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC--------EE-EEEEEEECSCTTSSCGGGCEEEEE
T ss_pred             CceEEEEeC-CEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC--------cC-CCEEEEEeCCCCCCCHHHhEEEEE
Confidence            678999999 899999999996543  677788888999999863        12 2222223467764 2 56789999


Q ss_pred             EEe
Q 046324          116 LWF  118 (119)
Q Consensus       116 ~~~  118 (119)
                      +++
T Consensus       153 ipv  155 (158)
T 3e0h_A          153 LML  155 (158)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=95.41  E-value=0.02  Score=37.22  Aligned_cols=69  Identities=10%  Similarity=-0.067  Sum_probs=47.5

Q ss_pred             CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHH-HHhhcCCcchhhhhccccCCCceEEEEeCC-CCCCCCCeeeEE
Q 046324           38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALK-KSLKNSTWESAIIFNNKISDDHLSVAGYNS-PFQNENRINEVL  115 (119)
Q Consensus        38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~-P~~~~~R~NEVw  115 (119)
                      +.+.+.++| +.+++|..|.|...  .+.+--..|. ++|.+.|+.         ..+...+-.|.. |......+-|||
T Consensus        82 ~~~~~~~ip-~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---------~~~~~~~E~Y~~~~~~~~~~~tei~  149 (157)
T 1jyh_A           82 EGVILTEIT-GGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---------MLPKPCFEVYLNNGAEDGYWDIEMY  149 (157)
T ss_dssp             TTCEEEEEC-CEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---------ECSSCEEEEECSCHHHHSSEEEEEE
T ss_pred             CCeEEEEeC-CCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---------cCCCceEEEecCCCCCcccEEEEEE
Confidence            468888999 99999999999763  3556667775 899998853         122244556732 222245567999


Q ss_pred             EEe
Q 046324          116 LWF  118 (119)
Q Consensus       116 ~~~  118 (119)
                      |++
T Consensus       150 ipi  152 (157)
T 1jyh_A          150 VAV  152 (157)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            987

>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}

Probab=87.58  E-value=4.6  Score=26.84  Aligned_cols=71  Identities=10%  Similarity=0.020  Sum_probs=47.0

Q ss_pred             CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHH-HHHhhcCCcchhhhhccccCCCceEEEEeCCCCCC-CCCeeeEE
Q 046324           38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASAL-KKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQN-ENRINEVL  115 (119)
Q Consensus        38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~-~~R~NEVw  115 (119)
                      ..+...++| +.+.+|-++.|-..+ .+.+--..+ .++|...|++         ....+.+-.|+.+-.. -+-.=|||
T Consensus        85 ~~~~~~~ip-~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~---------~~~~p~fE~Y~~~~~~~~~~~~ei~  153 (158)
T 3lur_A           85 AKYDVITLA-SSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT---------VKSAPFFELYQDGDTTSEKYITEIW  153 (158)
T ss_dssp             GGSEEEEEC-CEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT---------BCSSCEEEEECSSCTTSTTCEEEEE
T ss_pred             CCcEEEEEC-CceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe---------eCCCccEEEECCCCCCCcceEEEEE
Confidence            567889999 999999999996543 444455554 4579888753         2233455568764221 34466999


Q ss_pred             EEeC
Q 046324          116 LWFD  119 (119)
Q Consensus       116 ~~~~  119 (119)
                      |++.
T Consensus       154 iPI~  157 (158)
T 3lur_A          154 MPVK  157 (158)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9973

>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2

Probab=87.09  E-value=2.9  Score=30.32  Aligned_cols=69  Identities=13%  Similarity=0.150  Sum_probs=45.5

Q ss_pred             CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHHH-HHhhcCCcchhhhhccccCCCceEEEEeC---CCC-CCC--CC
Q 046324           38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASALK-KSLKNSTWESAIIFNNKISDDHLSVAGYN---SPF-QNE--NR  110 (119)
Q Consensus        38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd---~P~-~~~--~R  110 (119)
                      +.+...++| +.+++|-++.|-  .+.+.+-...|. ++|.+.|++        . ...+.+-.|.   .|+ ..-  .=
T Consensus       210 ~~~~~~~iP-~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~--------~-~~~p~~E~Y~~~~~~~~~~~~~~~  277 (292)
T 1d5y_A          210 LTGHPVMLQ-GGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLT--------R-RKGQDIERYYPAEDAKAGDRPINL  277 (292)
T ss_dssp             TTCEEEEEC-CEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCE--------E-CSSCEEEEECGGGC----CCSCEE
T ss_pred             CcceEEEEC-CCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCc--------c-CCCCcEEEEeeccccCCCCCCCce
Confidence            568889999 899999999994  456777778885 899998853        1 1223344565   332 221  12


Q ss_pred             eeeEEEEe
Q 046324          111 INEVLLWF  118 (119)
Q Consensus       111 ~NEVw~~~  118 (119)
                      .=||||++
T Consensus       278 ~tEI~iPI  285 (292)
T 1d5y_A          278 RCELLIPI  285 (292)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            34999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	1e-14

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (156), Expect = 1e-14
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 28/135 (20%)

Query: 1   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL-------QAHPIKLPK------ 47
           +  Y  G ND+   + MT PV   + P+        +L              P       
Sbjct: 56  IMKYVGGTNDKGVGMGMTVPVSFAVFPN-EDGSLQKKLKVWFRIPNQFQGSPPAPSDESV 114

Query: 48  ------HKYVVVRRFGDFMDDNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGY 101
                    V   +FG +  +      A+ L+ +L+ +              D    AGY
Sbjct: 115 KIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--------TYQGDVYYCAGY 166

Query: 102 NSPFQNENRINEVLL 116
           + P +   R NEV L
Sbjct: 167 DPPMKPYGRRNEVWL 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	82.23

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.9e-38  Score=226.78  Aligned_cols=109  Identities=25%  Similarity=0.371  Sum_probs=98.0

Q ss_pred             CccccCCCCCCCCccCcCcceEEEecCCCCC--------CccccC-----------CceeEEeCCCCcEEEEEEecccCC
Q 046324            1 LYSYFQGNNDQSAKITMTAPVLTNIIPSING--------PFCNSQ-----------LQAHPIKLPKHKYVVVRRFGDFMD   61 (119)
Q Consensus         1 L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~--------~f~~p~-----------~~V~i~~~p~~~~v~vr~F~G~~~   61 (119)
                      ||+||+|+|+++++|+||+||++++.++.++        +|++|.           ++|+|+++| +.++||++|+|+++
T Consensus        56 L~~YI~G~N~~~~kI~MTaPV~~~~~~~~~~~~~~~~~m~F~lP~~~~~~~P~P~d~~V~i~~~p-~~~vav~~F~G~~~  134 (184)
T d2gova1          56 IMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEERE-GITVYSTQFGGYAK  134 (184)
T ss_dssp             HHHHHHTCBTTCCCCCCCCCEEEEEEECTTSCEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECC-SCEEEEEEEESCCC
T ss_pred             HhheeccCCCCCcccccccceEEEEecCCCCcccCcEEEEEEcchhhcccCCCCccccceeeccC-cceEEEEEeCCccc
Confidence            7899999999999999999999998766222        466664           889999999 99999999999999


Q ss_pred             hhhHHHHHHHHHHHhhcCCcchhhhhccccCCCceEEEEeCCCCCCCCCeeeEEEEe
Q 046324           62 DNSISTQASALKKSLKNSTWESAIIFNNKISDDHLSVAGYNSPFQNENRINEVLLWF  118 (119)
Q Consensus        62 ~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw~~~  118 (119)
                      ++++.+++++|+++|+++|+.        +..+.|++|+||+||++|+|||||||..
T Consensus       135 ~~~~~~~~~~L~~~L~~~g~~--------~~~~~~~~a~Yd~P~~p~~R~NEVw~vk  183 (184)
T d2gova1         135 EADYVAHATQLRTTLEGTPAT--------YQGDVYYCAGYDPPMKPYGRRNEVWLVK  183 (184)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCC--------EEEEEEEEEESSCCSSSSCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCc--------ccCCCEEEEEeCCCCCCCCcceeEEEEe
Confidence            999999999999999999963        5666789999999999999999999975

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=82.23  E-value=1.3  Score=27.42  Aligned_cols=69  Identities=12%  Similarity=0.001  Sum_probs=42.9

Q ss_pred             CceeEEeCCCCcEEEEEEecccCChhhHHHHHHHH-HHHhhcCCcchhhhhccccCCCceEEEEeCC-CCCCCCCeeeEE
Q 046324           38 LQAHPIKLPKHKYVVVRRFGDFMDDNSISTQASAL-KKSLKNSTWESAIIFNNKISDDHLSVAGYNS-PFQNENRINEVL  115 (119)
Q Consensus        38 ~~V~i~~~p~~~~v~vr~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~~~~~~~A~Yd~-P~~~~~R~NEVw  115 (119)
                      ..|.+..+| +.++++-.+.|-..+  +.+....| .++|.+.|+.        .. ..+.+-.|.. |...-.-.=|||
T Consensus        82 ~~i~~~~lp-~g~yA~~~~~G~~~~--~~~~~~~~~~~wl~~~gy~--------~~-~~p~~E~Y~~~~~~~~~~~~ei~  149 (155)
T d1jyha_          82 EGVILTEIT-GGQYAVAVARVVGDD--FAKPWYQFFNSLLQDSAYE--------ML-PKPCFEVYLNNGAEDGYWDIEMY  149 (155)
T ss_dssp             TTCEEEEEC-CEEEEEEEEEECSSC--CHHHHHHHHHHHTTCSSEE--------EC-SSCEEEEECSCHHHHSSEEEEEE
T ss_pred             ceEEEEEEC-CccEEEEEEccChHH--HHHHHHHHHhhhhhhcCCe--------EC-CCccEEEEcCCCCCCCCEEEEEE
Confidence            448999999 999999999987543  33444445 6899999863        22 2333444642 222111123999


Q ss_pred             EEe
Q 046324          116 LWF  118 (119)
Q Consensus       116 ~~~  118 (119)
                      |++
T Consensus       150 iPI  152 (155)
T d1jyha_         150 VAV  152 (155)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986