Citrus Sinensis ID: 046346

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSQQLRSWFQNDDPTPFGTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHccccccccccccccccHHHHHHcccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHccccEEEEcccccccccccccccccEEEccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHccccccccEEEEEEccHHHHccccccccHHHHHHHcccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHcccccccEEEEEcHHHHccccccccccEEEcccHHcccccccEEEEc
Coil and Loop (DISEMBL)
mnlidgerdteplEAQIHVWNHIFNFINSMTLKcsiqlgipdiinkhgkpmtLNELQKLVSsgnnndeeqgYVLTNAsklllkdnplsqqlrswfqnddptpfgteydgdepklnnffneaMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAfpklectcfdlphvvngleSDLVNLkyvggdmfkaispadavvlk
Flexible Loop (DISEMBL)
mnlidgerdtEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSQQLRSWFQNDDPTPFGTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKaispadavvlk
Low Complexity Region (SEG)
MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSQQLRSWFQNDDPTPFGTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVgggtgtaakaiakaFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK
Disordered region (IsUnstruct)
*************EAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKP*********************YVLTNASKLLL***********W********************NNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISP*******
Disordered Region (DISOPRED)
***************QIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSQQLRSWFQNDDPTPFGTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK
Disordered Region (DISEMBL)
MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSQQLRSWFQNDDPTPFGTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK
Disordered Region (DISPRO)
********DTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSQQLRSWFQNDDPTPFGTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSQQLRSWFQNDDPTPFGTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
B6VJS4	357	Trans-resveratrol di-O-me	no	no	0.995	0.582	0.542	1e-65
Q93WU2	357	Eugenol O-methyltransfera	N/A	no	0.937	0.549	0.439	1e-48
Q93WU3	356	Chavicol O-methyltransfer	N/A	no	0.937	0.550	0.432	7e-47
Q8GSN1	348	Myricetin O-methyltransfe	N/A	no	0.961	0.577	0.422	7e-44
Q6VMW0	366	8-hydroxyquercetin 8-O-me	N/A	no	0.947	0.540	0.439	7e-43
B0EXJ8	355	Tabersonine 16-O-methyltr	N/A	no	0.928	0.546	0.417	4e-42
Q84KK4	365	Isoflavone 4'-O-methyltra	N/A	no	0.971	0.556	0.383	2e-39
O22308	352	Isoflavone-7-O-methyltran	N/A	no	0.976	0.579	0.386	1e-38
O24529	352	Isoflavone-7-O-methyltran	N/A	no	0.976	0.579	0.386	1e-38
O22309	352	Isoflavone-7-O-methyltran	N/A	no	0.976	0.579	0.386	2e-38

>sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2

 Score =  249 bits (636), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/258 (54%), Positives = 162/258 (62%), Gaps = 50/258 (19%)

Query: 1   MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL---- 56
           M+L +G    E L AQ HVWNHIFNFI SM+LKC+IQLGIPDII+ HGKPMTL EL    
Sbjct: 1   MDLANGVISAELLHAQAHVWNHIFNFIKSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 57  --------------QKLVSSG-------NNNDEEQGYVLTNASKLLLKDNPLS------- 88
                         + LV SG           EE+GYVLT+AS+LLL D+ LS       
Sbjct: 61  PVHPKRSQCVYRLMRILVHSGFLAAQRVQQGKEEEGYVLTDASRLLLMDDSLSIRPLVLA 120

Query: 89  ----------QQLRSWFQNDDPTPFGTEYD-------GDEPKLNNFFNEAMASDARLATS 131
                       L +WFQNDDPTPF T Y+       G EP+LNN FNEAMASDARL TS
Sbjct: 121 MLDPILTKPWHYLSAWFQNDDPTPFHTAYERSFWDYAGHEPQLNNSFNEAMASDARLLTS 180

Query: 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKY 191
           V++++ + VF GLNSLVDVGGGTG  AKAIA AFP L CT  DL HVV GL+    NL Y
Sbjct: 181 VLLKEGQGVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGS-KNLNY 239

Query: 192 VGGDMFKAISPADAVVLK 209
             GDMF+AI PADA++LK
Sbjct: 240 FAGDMFEAIPPADAILLK 257

Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME).
Vitis vinifera (taxid: 29760)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0

>sp|Q93WU2|EOMT1_OCIBA Eugenol O-methyltransferase OS=Ocimum basilicum GN=EOMT1 PE=1 SV=1

 Score =  192 bits (488), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 108/246 (43%), Positives = 145/246 (58%), Gaps = 50/246 (20%)

Query: 13  LEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL--------------QK 58
           L+AQ+HVWNH++ F NSM+LKC+IQLGIPDI++KHG+PMTL++L              Q+
Sbjct: 16  LQAQVHVWNHMYAFANSMSLKCAIQLGIPDILHKHGRPMTLSQLLQSIPINKEKTQCFQR 75

Query: 59  L----------VSSGNNNDEEQGYVLTNASKLLLKDNPLS-----------------QQL 91
           L          +   N+N++E  Y LT AS LLLK+ PL+                   +
Sbjct: 76  LMRALVNSNFFIEENNSNNQEVCYWLTPASCLLLKEAPLTVTPLVQVVLDPTFTNPWHHM 135

Query: 92  RSWFQND-DPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEG 143
             WF ++   T F         E   +EP    FF+EAM+ D+RL   V  +  K+V EG
Sbjct: 136 SEWFTHEKHATQFEAANGCTFWEKLANEPSKGRFFDEAMSCDSRLIAHVFTKDYKHVIEG 195

Query: 144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPA 203
           + +LVDVGGG GT AKAI +A P ++CT  DLPHVV GLES   NL Y+GGDMF++I  A
Sbjct: 196 IRTLVDVGGGNGTMAKAIVEAMPTIKCTVIDLPHVVAGLEST-DNLNYIGGDMFQSIPSA 254

Query: 204 DAVVLK 209
           DA++LK
Sbjct: 255 DAILLK 260

Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of eugenol to methyleugenol. Can also convert chavicol to methylchavicol but with less affinity.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

>sp|Q93WU3|CVMT1_OCIBA Chavicol O-methyltransferase OS=Ocimum basilicum GN=CVOMT1 PE=1 SV=1

 Score =  186 bits (473), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 106/245 (43%), Positives = 146/245 (59%), Gaps = 49/245 (20%)

Query: 13  LEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK-------------- 58
           L+AQ HVWNH++ F NSM+LKC+IQLGIPDI++KH  PMTL++L K              
Sbjct: 16  LQAQAHVWNHMYAFANSMSLKCAIQLGIPDILHKHDHPMTLSQLLKAIPINKEKSQSFQR 75

Query: 59  ----LVSSG-----NNNDEEQGYVLTNASKLLLKDNPLS-----------------QQLR 92
               LV+S      N+N++E  Y LT AS+LLLK  PL+                   + 
Sbjct: 76  LMRALVNSNFFIEENSNNQEVCYWLTPASRLLLKGAPLTVAPLVQVVLDPTFTNPWHYMS 135

Query: 93  SWFQNDD-PTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGL 144
            WF++++  T F         E   ++P +  FF+EAM+ D+RL   V+ +  K+V +G+
Sbjct: 136 EWFKHENHATQFEAANGCTFWEKLANKPSMGRFFDEAMSCDSRLVAHVLTKDYKHVIDGI 195

Query: 145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAD 204
            +LVDVGGG GT AKAI +A P ++CT  DLPHVV GLES    L Y+GGDMF++I  AD
Sbjct: 196 RTLVDVGGGNGTMAKAIVEAVPTMKCTVLDLPHVVAGLEST-DKLSYIGGDMFQSIPSAD 254

Query: 205 AVVLK 209
           A++LK
Sbjct: 255 AILLK 259

Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of chavicol to methylchavicol. Can also convert eugenol to methyleugenol but with less affinity.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

>sp|Q8GSN1|MOMT_CATRO Myricetin O-methyltransferase OS=Catharanthus roseus PE=1 SV=1

 Score =  176 bits (447), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 103/244 (42%), Positives = 146/244 (59%), Gaps = 43/244 (17%)

Query: 8   RDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL----------- 56
           + +E   AQ H +  +F+F +  +LKC++QLGIPD I+ HGKPM L++L           
Sbjct: 4   QSSEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSKA 63

Query: 57  -------QKLVSSGNNNDEEQG-YVLTNASKLLLKDNPLSQ-----------------QL 91
                  + LV++G  ++EE+  Y LT  ++LLLK++PL+                   +
Sbjct: 64  PYIYRLMRILVAAGYFSEEEKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIAELKAWNAM 123

Query: 92  RSWFQNDDPTPFGTEYD------GDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLN 145
             WFQN+D T F T +       G E K    F+  MA+D+ L + ++I +   +FEGL+
Sbjct: 124 SEWFQNEDLTAFETAHGKNFWDFGAEDKYGKNFDGVMAADSILVSKMLIPEFNYLFEGLD 183

Query: 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADA 205
           SLVDVGGGTGT AKAIAK+FP L+CT FDLPHVV  LES   NL++VGGDMF+ I  A+A
Sbjct: 184 SLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLEST-ENLEFVGGDMFEKIPSANA 242

Query: 206 VVLK 209
           ++LK
Sbjct: 243 ILLK 246

Methylates myricetin and dihydromyricetin at 2 sites. Inactive towards 16-hydroxytabersonine, the phenylpropanoids 5-hydroxyferulate, caffeate and their CoA-esters, flavones and flavonones possessing 2 or 3 B-ring hydroxyl groups.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 9

>sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1

 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/255 (43%), Positives = 142/255 (55%), Gaps = 57/255 (22%)

Query: 11  EPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL-------------- 56
           E LEAQ HVWNHI+++INSM+LKC+IQLGIPD I+KHG P+TL++L              
Sbjct: 12  ELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKAKSHGL 71

Query: 57  ----QKLVSSG--------------NNNDEEQGYVLTNASKLLLKDNPLS---------- 88
               + LV SG              +  +EE  Y LT AS+LLL+  PLS          
Sbjct: 72  FRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMSD 131

Query: 89  -------QQLRSWFQNDDPTPFGTEYDGDEP-------KLNNFFNEAMASDARLATSVMI 134
                    L  WF+ND    F T+Y    P       +LN  FNEAMA DA    S++ 
Sbjct: 132 PVYTETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSILT 191

Query: 135 QKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGG 194
            +C+ +F+GL S+VDVGGGTG  AK IA AFP +ECT  DLP+VV GL+    NL +V G
Sbjct: 192 TECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGS-ENLSFVSG 250

Query: 195 DMFKAISPADAVVLK 209
           DMF  I  ADA+ +K
Sbjct: 251 DMFDFIPHADAIFMK 265

8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether.

Mentha piperita (taxid: 34256)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 8

>sp|B0EXJ8|HTOMT_CATRO Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/247 (41%), Positives = 142/247 (57%), Gaps = 53/247 (21%)

Query: 15  AQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL------------------ 56
           AQ  +W+   +FI S +LKC+++LGIPD I+ HGKP+TL+EL                  
Sbjct: 11  AQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNALVPPVHPSKAPFIYR 70

Query: 57  --QKLVSSGNNNDE------EQGYVLTNASKLLLKDNPLS-----------------QQL 91
             + L  +G  ++E      E  Y LT +S++LLK  PL+                 + L
Sbjct: 71  LMRVLAKNGFCSEEQLDGETEPLYSLTPSSRILLKKEPLNLRGIVLTMADPVQLKAWESL 130

Query: 92  RSWFQNDD--PTPFGTE-------YDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFE 142
             W+QN+D   T F T        Y  +  +   FFNEAMASD++L + ++I + K +FE
Sbjct: 131 SDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLIGEYKFLFE 190

Query: 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISP 202
           GL SLVD+GGGTGT AKAIAK FP+L+CT FDLPHVV  LES   N+++V GDMF+ I  
Sbjct: 191 GLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESK-ENVEFVAGDMFEKIPS 249

Query: 203 ADAVVLK 209
           A+A+ LK
Sbjct: 250 ANAIFLK 256

16-O-methyltransferase involved in the biosynthesis of vindoline. Highly specific for 16-hydroxytabersonine. No activity with tabersonine, 3-hydroxytyramine, 4-hydroxytyramine, 5-hydroxytryptamine (5HT), 2,3-dihydro-3-hydroxytabersonine, lochnericine, hoerhammericine, 16-hydroxy-2,3-dihydro-3-hydroxytabersonine, 16-hydroxylochnericine, 16-hydroxyhoerhammericine, quercetin, kaempferol and caffeic acid as substrates.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 142/261 (54%), Gaps = 58/261 (22%)

Query: 5   DGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL-------- 56
           +G  DTE  +AQIH++ H++NF++SM LK +++LGI D+I+ HGKP+TL EL        
Sbjct: 7   NGSEDTELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELATALNLRP 66

Query: 57  --------------------QKLVSSGNNNDEEQGYVLTNASKLLLKDNP---------- 86
                               +  VS G   +EE  Y LT  SKLL+K N           
Sbjct: 67  SKIGVLHRFLRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIVKGA 126

Query: 87  -------LSQQLRSWF--QNDDPTPFGT-------EYDGDEPKLN--NFFNEAMASDARL 128
                  + +  + WF   N++ T F +       E+   E + +  + F EAMA+D+ +
Sbjct: 127 LHPSSLDMWRSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSHM 186

Query: 129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVN 188
              + +++CK+VFEGL SLVDV GG G   K I +AFP ++CT FD P VV  L  D  N
Sbjct: 187 F-KLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGD-EN 244

Query: 189 LKYVGGDMFKAISPADAVVLK 209
           L +VGGDMFK++ PADAV+LK
Sbjct: 245 LNFVGGDMFKSVPPADAVLLK 265

2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone as substrate, but not daidzein.

Lotus japonicus (taxid: 34305)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 2

>sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 142/251 (56%), Gaps = 47/251 (18%)

Query: 4   IDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL------- 56
           I+G + +E  +AQ  ++ HI+ FI+SM+LK ++++ IP+II  HGKP++L+ L       
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64

Query: 57  -------QKLVSSGNNN-------DEEQGYVLTNASKLLLKDNPLS-------------- 88
                  ++L+    +N        EE+ Y LT AS+LL++ + L               
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124

Query: 89  ---QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCK 138
               +L+ W   +D T FG        ++    P+ N  FN+AMASD++L  ++ ++ C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCD 183

Query: 139 NVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198
            VF+GL S+VDVGGGTGT AK I + FPKL+C  FD P VV  L S   NL YVGGDMF 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFT 242

Query: 199 AISPADAVVLK 209
           +I  ADAV+LK
Sbjct: 243 SIPNADAVLLK 253

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 142/251 (56%), Gaps = 47/251 (18%)

Query: 4   IDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL------- 56
           I+G + +E  +AQ  ++ HI+ FI+SM+LK ++++ IP+II  HGKP++L+ L       
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64

Query: 57  -------QKLVSSGNNN-------DEEQGYVLTNASKLLLKDNPLS-------------- 88
                  ++L+    +N        EE+ Y LT AS+LL++ + L               
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124

Query: 89  ---QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCK 138
               +L+ W   +D T FG        ++    P+ N  FN+AMASD++L  ++ ++ C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCD 183

Query: 139 NVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198
            VF+GL S+VDVGGGTGT AK I + FPKL+C  FD P VV  L S   NL YVGGDMF 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFT 242

Query: 199 AISPADAVVLK 209
           +I  ADAV+LK
Sbjct: 243 SIPNADAVLLK 253

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/251 (38%), Positives = 142/251 (56%), Gaps = 47/251 (18%)

Query: 4   IDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL------- 56
           I+G + +E  +AQ  ++ HI+ FI+SM+LK ++ + IP+II+ HGKP++L+ L       
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQVP 64

Query: 57  -------QKLVSSGNNN-------DEEQGYVLTNASKLLLKDNPLS-------------- 88
                  ++L+    +N        EE+ Y LT AS+LL++ + L               
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124

Query: 89  ---QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCK 138
               +L+ W   +D T FG        ++    P+ N  FN+AMASD++L  ++ ++ C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCD 183

Query: 139 NVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198
            VF+GL S+VDVGGGTGT AK I + FPKL+C  FD P VV  L S   NL YVGGDMF 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFT 242

Query: 199 AISPADAVVLK 209
           +I  ADAV+LK
Sbjct: 243 SIPNADAVLLK 253

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
225446491	357	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.995	0.582	0.581	4e-72
147816431	357	hypothetical protein VITISV_020020 [Viti	0.995	0.582	0.577	9e-72
225446489	357	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.995	0.582	0.573	3e-71
359485241	351	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.995	0.592	0.554	3e-68
359485239	357	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.995	0.582	0.554	4e-68
255553573	356	o-methyltransferase, putative [Ricinus c	0.952	0.558	0.562	6e-68
359485243	357	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.995	0.582	0.546	1e-67
123718186	346	putative orcinol O-methyltransferase [Ro	0.976	0.589	0.553	8e-67
225446494	357	PREDICTED: tabersonine 16-O-methyltransf	0.995	0.582	0.546	9e-67
225446483	357	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.995	0.582	0.546	1e-66

>gi|225446491|ref|XP_002278211.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera]

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 150/258 (58%), Positives = 173/258 (67%), Gaps = 50/258 (19%)

Query: 1   MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL---- 56
           M+L   E  +E L AQ HVWNHIFNFINSM+LKC+IQLGIPDII+ HGKPMTL EL    
Sbjct: 1   MDLESVETSSELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 57  --------------QKLVSSG-------NNNDEEQGYVLTNASKLLLKDNPLS------- 88
                         + LV SG         +++E+GYVLT+AS+LLL+D+PLS       
Sbjct: 61  PIHPKKVWCVYRLMRILVQSGFFARQKVEESEQEEGYVLTHASRLLLEDDPLSVRPFLLA 120

Query: 89  ----------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATS 131
                       + +WFQNDDPTPF T       +Y G EPK+NNFFNEAMASDARL TS
Sbjct: 121 MLDPILTKPWHYVSAWFQNDDPTPFDTAHGRTFWDYGGHEPKINNFFNEAMASDARLVTS 180

Query: 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKY 191
           V+I+ CK VFEGLNSLVDVGGGTGT AKAIA AFP L CT FDLPHVV GLE    NL Y
Sbjct: 181 VLIKDCKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVFDLPHVVAGLEGS-KNLNY 239

Query: 192 VGGDMFKAISPADAVVLK 209
           +GGDMFK I PADA++LK
Sbjct: 240 LGGDMFKGIPPADAILLK 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816431|emb|CAN61955.1| hypothetical protein VITISV_020020 [Vitis vinifera]

 Score =  275 bits (703), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 149/258 (57%), Positives = 172/258 (66%), Gaps = 50/258 (19%)

Query: 1   MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL---- 56
           M+L   E  +E L AQ HVWNHIFNFINSM+LKC+IQLGIPDII+ HGKPMTL EL    
Sbjct: 1   MDLESVETSSELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 57  --------------QKLVSSG-------NNNDEEQGYVLTNASKLLLKDNPLS------- 88
                         + LV SG         +++E+GYVLT+AS+LLL+D+PLS       
Sbjct: 61  PIHPKKVWCVYRLMRILVQSGFFARQKVEESEQEEGYVLTHASRLLLEDDPLSVRPFLLA 120

Query: 89  ----------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATS 131
                       + +WFQNDDPTPF T       +Y G EPKJNNFFNEAMASDARL TS
Sbjct: 121 MLDPILTKPWHYVSAWFQNDDPTPFDTAHGXTFWDYGGHEPKJNNFFNEAMASDARLVTS 180

Query: 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKY 191
            +I+ CK VFEGLNSLVDVGGGTGT AKAIA AFP L CT FDLPHVV GLE    NL Y
Sbjct: 181 XLIKDCKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVFDLPHVVAGLEGS-KNLNY 239

Query: 192 VGGDMFKAISPADAVVLK 209
           +GGDMFK I PADA++LK
Sbjct: 240 LGGDMFKGIPPADAILLK 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446489|ref|XP_002278190.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera]

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/258 (57%), Positives = 171/258 (66%), Gaps = 50/258 (19%)

Query: 1   MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL---- 56
           M L  GE  TE L A  HVWNHIFNFINSM+LKC+I+LGIPDII+ HGKPMTL+EL    
Sbjct: 1   MALAVGETSTELLHAHAHVWNHIFNFINSMSLKCAIELGIPDIIHNHGKPMTLSELVAEL 60

Query: 57  --------------QKLVSSG-------NNNDEEQGYVLTNASKLLLKDNPLS------- 88
                         + LV SG         + +E+GYVLT+AS+LLLKD+PLS       
Sbjct: 61  PVNPEKTKCVYRLMRLLVQSGFFTRKRVQESGQEEGYVLTHASRLLLKDDPLSARPFLLA 120

Query: 89  ----------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATS 131
                     Q + +WFQNDDPTPF T       +Y G EPKLNNFFNEAMASDARL TS
Sbjct: 121 MLDPVLITPWQYVSAWFQNDDPTPFDTAHGRTFWDYAGHEPKLNNFFNEAMASDARLVTS 180

Query: 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKY 191
           V+I+ CK +F GLNSLVDVGGGTGT A+AIA AFP L CT  DLPHVV GLE    NL Y
Sbjct: 181 VLIKDCKGIFVGLNSLVDVGGGTGTVARAIANAFPHLNCTVLDLPHVVAGLEGS-KNLNY 239

Query: 192 VGGDMFKAISPADAVVLK 209
           + GDMF+AI PADA++LK
Sbjct: 240 LAGDMFEAIPPADAILLK 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485241|ref|XP_003633242.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase isoform 2 [Vitis vinifera]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 143/258 (55%), Positives = 170/258 (65%), Gaps = 50/258 (19%)

Query: 1   MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL---- 56
           M+  +GE  +E L+AQ HVWNHIFNF+NSM+LKC+IQLGIPDII+ HGKPMTL EL    
Sbjct: 1   MDPANGEISSELLQAQAHVWNHIFNFVNSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 57  --------------QKLVSS-------GNNNDEEQGYVLTNASKLLLKDNPLS------- 88
                         + LV S          ++EE+GYVLT+AS+LLLKD+ LS       
Sbjct: 61  PVHPKKTQYVYRLMRVLVQSDFFAAQRAQQSEEEEGYVLTHASRLLLKDDSLSVRPFLLA 120

Query: 89  ----------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATS 131
                       + +WFQNDDPTPF T       +Y G EP+LN FFNEAMASDARL TS
Sbjct: 121 MLDPTLTKPWHYVSAWFQNDDPTPFDTAHERTLWDYAGHEPQLNYFFNEAMASDARLVTS 180

Query: 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKY 191
           V++++ K VFEGLNSLVDVGGGTGT AKAIA AFP L CT  DLPHVV GL+    NL Y
Sbjct: 181 VLVKEGKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVLDLPHVVAGLQGS-KNLNY 239

Query: 192 VGGDMFKAISPADAVVLK 209
             GDMF+AI PADA++LK
Sbjct: 240 FAGDMFEAIPPADAILLK 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485239|ref|XP_002274019.2| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase isoform 1 [Vitis vinifera]

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 143/258 (55%), Positives = 170/258 (65%), Gaps = 50/258 (19%)

Query: 1   MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL---- 56
           M+  +GE  +E L+AQ HVWNHIFNF+NSM+LKC+IQLGIPDII+ HGKPMTL EL    
Sbjct: 1   MDPANGEISSELLQAQAHVWNHIFNFVNSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 57  --------------QKLVSS-------GNNNDEEQGYVLTNASKLLLKDNPLS------- 88
                         + LV S          ++EE+GYVLT+AS+LLLKD+ LS       
Sbjct: 61  PVHPKKTQYVYRLMRVLVQSDFFAAQRAQQSEEEEGYVLTHASRLLLKDDSLSVRPFLLA 120

Query: 89  ----------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATS 131
                       + +WFQNDDPTPF T       +Y G EP+LN FFNEAMASDARL TS
Sbjct: 121 MLDPTLTKPWHYVSAWFQNDDPTPFDTAHERTLWDYAGHEPQLNYFFNEAMASDARLVTS 180

Query: 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKY 191
           V++++ K VFEGLNSLVDVGGGTGT AKAIA AFP L CT  DLPHVV GL+    NL Y
Sbjct: 181 VLVKEGKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVLDLPHVVAGLQGS-KNLNY 239

Query: 192 VGGDMFKAISPADAVVLK 209
             GDMF+AI PADA++LK
Sbjct: 240 FAGDMFEAIPPADAILLK 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553573|ref|XP_002517827.1| o-methyltransferase, putative [Ricinus communis] gi|223542809|gb|EEF44345.1| o-methyltransferase, putative [Ricinus communis]

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 140/249 (56%), Positives = 167/249 (67%), Gaps = 50/249 (20%)

Query: 10  TEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL------------- 56
            E L+AQ H+WNHIFNFINSM+LK +IQLGIPD I+ HG+P++L++L             
Sbjct: 9   VELLQAQAHIWNHIFNFINSMSLKSAIQLGIPDAIHSHGRPISLSQLIAALPVLPAKARC 68

Query: 57  -----QKLVSSG-------NNNDEEQGYVLTNASKLLLKDNPLS---------------- 88
                + LV SG         NDEE+G+VLT+ASKLLLKDNPLS                
Sbjct: 69  IPRLMRILVHSGFFANAKIKGNDEEEGFVLTSASKLLLKDNPLSVTPFLLAMLDPILTEP 128

Query: 89  -QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNV 140
              + +WFQNDD TPF T       EY G+EPK NNFFNEAMASDARL   V+I + K V
Sbjct: 129 WHYVSTWFQNDDATPFDTVHGMPFWEYAGNEPKFNNFFNEAMASDARLVMRVLIDEYKGV 188

Query: 141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAI 200
           FEGLNSLVDVGGGTGT A AIAKAFP+L+C  FDLPHVV GL+S   NLKYVGG+MF+ +
Sbjct: 189 FEGLNSLVDVGGGTGTMAAAIAKAFPQLDCIVFDLPHVVAGLQSS-ANLKYVGGNMFEGV 247

Query: 201 SPADAVVLK 209
            PADA++LK
Sbjct: 248 PPADAILLK 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485243|ref|XP_002277927.2| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase isoform 2 [Vitis vinifera]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/258 (54%), Positives = 170/258 (65%), Gaps = 50/258 (19%)

Query: 1   MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL---- 56
           M+  + E  +E L+AQ HVWNHIFNF+NSM+LKC+IQLGIPDII+ HGKPMTL +L    
Sbjct: 1   MDPANSEMSSELLQAQAHVWNHIFNFVNSMSLKCAIQLGIPDIIHNHGKPMTLPQLVAKL 60

Query: 57  --------------QKLVSS-------GNNNDEEQGYVLTNASKLLLKDNPLS------- 88
                         + LV S          ++EE+GYVLT+AS+LLLKD+ LS       
Sbjct: 61  PVHPKKTQYVYRLMRVLVQSDFFAAQRAQQSEEEEGYVLTHASRLLLKDDSLSVRPFLLA 120

Query: 89  ----------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATS 131
                       + +WFQNDDPTPF T       +Y G EP+LN FFNEAMASDARL TS
Sbjct: 121 MLDPTLTKPWHYVSAWFQNDDPTPFDTAHERTLWDYAGHEPQLNYFFNEAMASDARLVTS 180

Query: 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKY 191
           V++++ K VFEGLNSLVDVGGGTGT AKAIA AFP L+CT  DLPHVV GL+    NL Y
Sbjct: 181 VLVKEGKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLKCTVLDLPHVVAGLQGS-KNLNY 239

Query: 192 VGGDMFKAISPADAVVLK 209
             GDMF+AI PADA++LK
Sbjct: 240 FAGDMFEAIPPADAILLK 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718186|emb|CAJ65608.1| putative orcinol O-methyltransferase [Rosa bracteata]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 140/253 (55%), Positives = 163/253 (64%), Gaps = 49/253 (19%)

Query: 5   DGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK------ 58
           +GE   EPL AQ H+WNHIF+FINSM+LK +IQLGIPDIINKHG PMTL+EL        
Sbjct: 5   NGEHSNEPLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHP 64

Query: 59  ------------LVSSGN------NNDEEQGYVLTNASKLLLKDNPLS------------ 88
                       LV SG       +  +E+GY LT+AS+LLLKD+PLS            
Sbjct: 65  TKSHSVYRLMRILVHSGFFAKKKLSTTDEEGYTLTDASQLLLKDHPLSITPFLTAMLDPV 124

Query: 89  -----QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQK 136
                  L +WFQNDDPTPF T       +Y   +P + +FFN+AMASDARL TSV+I  
Sbjct: 125 LTKPWNYLSTWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIIDD 184

Query: 137 CKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDM 196
           CK VFEGL SLVDVGGGTGT AKAIA AFP +ECT  DLPHVV  L+    NLKY GGDM
Sbjct: 185 CKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS-KNLKYTGGDM 243

Query: 197 FKAISPADAVVLK 209
           F+A  PADAV+LK
Sbjct: 244 FEAAPPADAVLLK 256

Source: Rosa bracteata

Species: Rosa bracteata

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446494|ref|XP_002278294.1| PREDICTED: tabersonine 16-O-methyltransferase [Vitis vinifera]

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 141/258 (54%), Positives = 166/258 (64%), Gaps = 50/258 (19%)

Query: 1   MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL---- 56
           M+L +GE   E L AQ HVWNHIFNFINSM+LKC+IQLGIPDII+ HGKPMT  EL    
Sbjct: 1   MDLANGEISAELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTFPELVAKL 60

Query: 57  --------------QKLVSSG-------NNNDEEQGYVLTNASKLLLKDNPLS------- 88
                         + LV SG          ++E+GYVLT+AS+LLL D+ LS       
Sbjct: 61  PVHPKRSQCVYRLMRILVHSGFLAAQRVQQGEQEEGYVLTDASRLLLMDDSLSIRPFLLA 120

Query: 89  ----------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATS 131
                       L +WFQNDDPTPF T       +Y G EP+LNNFFNEAMASD+RL  S
Sbjct: 121 MLDPVLTKPWHYLSAWFQNDDPTPFHTAHEQPFWDYAGHEPQLNNFFNEAMASDSRLVIS 180

Query: 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKY 191
           V++++ K +FEGLNSLVDVGGGTG  AKAIA AFP L CT  DLPHVV GL+    NL Y
Sbjct: 181 VLLKEGKGLFEGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLPHVVAGLQES-KNLNY 239

Query: 192 VGGDMFKAISPADAVVLK 209
             GDMF+AI PADA++LK
Sbjct: 240 FAGDMFEAIPPADAILLK 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446483|ref|XP_002278057.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/258 (54%), Positives = 167/258 (64%), Gaps = 50/258 (19%)

Query: 1   MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL---- 56
           M+   GE  +E L+AQ HVWNHIFNF+NSM+LKC+IQLGIPDII+ HGKPMTL EL    
Sbjct: 1   MDPAKGEISSELLQAQAHVWNHIFNFVNSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 57  --------------QKLVSS-------GNNNDEEQGYVLTNASKLLLKDNPLS------- 88
                         + LV S          ++EE+GYVLT+AS+LLLKD+ LS       
Sbjct: 61  PVHPKKTQYVYRLMRVLVQSDFFAAQRAQQSEEEEGYVLTHASQLLLKDDSLSVRPFLLA 120

Query: 89  ----------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATS 131
                       + +WFQNDDPTPF T       +Y G EP+LN F NEAMASDARL TS
Sbjct: 121 MLDPTLTKPWHYVSAWFQNDDPTPFNTAHERTLWDYAGHEPQLNYFINEAMASDARLVTS 180

Query: 132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKY 191
           V++++ K VFEGLNSLVDVGGGTGT AKAIA AFP L CT  DLPHVV GL+    NL Y
Sbjct: 181 VLVKEGKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVLDLPHVVAGLQGS-KNLNY 239

Query: 192 VGGDMFKAISPADAVVLK 209
             GDMF+ I PADA++LK
Sbjct: 240 FAGDMFEPIPPADAILLK 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
UNIPROTKB|Q6VMW0	366	OMT2 "8-hydroxyquercetin 8-O-m	0.564	0.322	0.412	2.7e-44
UNIPROTKB|Q84KK4	365	HI4'OMT "Isoflavone 4'-O-methy	0.440	0.252	0.478	6.9e-38
UNIPROTKB|Q84KK6	367	HI4'OMT "Isoflavone 4'-O-methy	0.440	0.250	0.489	2.1e-36
UNIPROTKB|B0EXJ8	355	16OMT "Tabersonine 16-O-methyl	0.650	0.383	0.416	5.6e-34
UNIPROTKB|Q8GSN1	348	Q8GSN1 "Myricetin O-methyltran	0.564	0.339	0.432	1e-32
UNIPROTKB|Q84KK5	357	D7OMT "Isoflavone 7-O-methyltr	0.564	0.330	0.401	5.8e-31
UNIPROTKB|A8QW53	374	OMT3 "5-pentadecatrienyl resor	0.607	0.339	0.382	2.7e-26
TAIR|locus:2132806	382	AT4G35160 [Arabidopsis thalian	0.583	0.319	0.330	2.7e-19
TAIR|locus:2132801	325	AT4G35150 [Arabidopsis thalian	0.942	0.606	0.300	7.5e-18
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.488	0.280	0.346	2.7e-16

UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)]

 Score = 241 (89.9 bits), Expect = 2.7e-44, Sum P(3) = 2.7e-44
 Identities = 52/126 (41%), Positives = 68/126 (53%)

Query:    91 LRSWFQNDDPTPFGTEYDGDEP-------KLNNFFNEAMASDARLATSVMIQKCKNVFEG 143
             L  WF+ND    F T+Y    P       +LN  FNEAMA DA    S++  +C+ +F+G
Sbjct:   141 LSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSILTTECREIFDG 200

Query:   144 LNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPA 203
             L S+VDV              FP +ECT  DLP+VV GL+    NL +V GDMF  I  A
Sbjct:   201 LESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGS-ENLSFVSGDMFDFIPHA 259

Query:   204 DAVVLK 209
             DA+ +K
Sbjct:   260 DAIFMK 265

GO:0009812 "flavonoid metabolic process" evidence=IDA

GO:0030761 "8-hydroxyquercitin 8-O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)]

 Score = 216 (81.1 bits), Expect = 6.9e-38, Sum P(3) = 6.9e-38
 Identities = 45/94 (47%), Positives = 60/94 (63%)

Query:   116 NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDL 175
             + F EAMA+D+ +   + +++CK+VFEGL SLVDV              FP ++CT FD 
Sbjct:   174 SMFQEAMAADSHMF-KLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQ 232

Query:   176 PHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
             P VV  L  D  NL +VGGDMFK++ PADAV+LK
Sbjct:   233 PQVVANLTGD-ENLNFVGGDMFKSVPPADAVLLK 265

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 220 (82.5 bits), Expect = 2.1e-36, Sum P(3) = 2.1e-36
 Identities = 46/94 (48%), Positives = 62/94 (65%)

Query:   116 NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDL 175
             + F EAMA+D+++   + +++C++VFEGL SLVDV              FP L+CT FD 
Sbjct:   176 SMFQEAMAADSQMF-KLALKECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQ 234

Query:   176 PHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
             P VV  L  +  NLK+VGGDMFK+I PADAV+LK
Sbjct:   235 PQVVGNLSGN-ENLKFVGGDMFKSIPPADAVLLK 267

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 251 (93.4 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
 Identities = 62/149 (41%), Positives = 85/149 (57%)

Query:    70 QGYVLTNASKLLLKDNPLSQQLRSWFQNDDP--TPFGTE-------YDGDEPKLNNFFNE 120
             +G VLT A  + LK     + L  W+QN+D   T F T        Y  +  +   FFNE
Sbjct:   112 RGIVLTMADPVQLK---AWESLSDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNE 168

Query:   121 AMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVN 180
             AMASD++L + ++I + K +FEGL SLVD+              FP+L+CT FDLPHVV 
Sbjct:   169 AMASDSQLISKLLIGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVA 228

Query:   181 GLESDLVNLKYVGGDMFKAISPADAVVLK 209
              LES   N+++V GDMF+ I  A+A+ LK
Sbjct:   229 NLESK-ENVEFVAGDMFEKIPSANAIFLK 256

GO:0005737 "cytoplasm" evidence=IDA

GO:0009821 "alkaloid biosynthetic process" evidence=IDA

GO:0030766 "11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 240 (89.5 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 54/125 (43%), Positives = 73/125 (58%)

Query:    91 LRSWFQNDDPTPFGTEYD------GDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGL 144
             +  WFQN+D T F T +       G E K    F+  MA+D+ L + ++I +   +FEGL
Sbjct:   123 MSEWFQNEDLTAFETAHGKNFWDFGAEDKYGKNFDGVMAADSILVSKMLIPEFNYLFEGL 182

Query:   145 NSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAD 204
             +SLVDV              FP L+CT FDLPHVV  LES   NL++VGGDMF+ I  A+
Sbjct:   183 DSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLEST-ENLEFVGGDMFEKIPSAN 241

Query:   205 AVVLK 209
             A++LK
Sbjct:   242 AILLK 246

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 228 (85.3 bits), Expect = 5.8e-31, Sum P(2) = 5.8e-31
 Identities = 51/127 (40%), Positives = 72/127 (56%)

Query:    90 QLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFE 142
             QL+ W   +D T FG        E+  + P+ N  FN+AMASD+++  ++ ++ C + FE
Sbjct:   134 QLKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMI-NLALRDCNSGFE 192

Query:   143 GLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISP 202
             G+ S+VDV              FP L+C  FD P VV  L S   NL YVGGDMF+++  
Sbjct:   193 GVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENL-SGTNNLSYVGGDMFQSVPK 251

Query:   203 ADAVVLK 209
             ADAV+LK
Sbjct:   252 ADAVLLK 258

GO:0009717 "isoflavonoid biosynthetic process" evidence=IDA

GO:0033800 "isoflavone 7-O-methyltransferase activity" evidence=IDA

UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 228 (85.3 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
 Identities = 54/141 (38%), Positives = 80/141 (56%)

Query:    83 KDNPLSQQLRSWFQNDD----P--TPF----GT---EYDGDEPKLNNFFNEAMASDARLA 129
             +D+PLS  L +WF++D+    P   PF    GT   E    +  +N  FN AMA+D+   
Sbjct:   135 RDSPLSMGLTAWFRHDEDEQAPGMCPFTLMYGTTLWEVCRRDDAINALFNNAMAADSNFL 194

Query:   130 TSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVV-NGLESDLVN 188
               +++++   VF G++SLVDV              FP L+CT  DLPHVV     S + N
Sbjct:   195 MQILLKEFSEVFLGIDSLVDVAGGVGGATMAIAAAFPCLKCTVLDLPHVVAKAPSSSIGN 254

Query:   189 LKYVGGDMFKAISPADAVVLK 209
             +++VGGDMF++I PA+ V+LK
Sbjct:   255 VQFVGGDMFESIPPANVVLLK 275

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
 Identities = 43/130 (33%), Positives = 62/130 (47%)

Query:    87 LSQQLRSWFQNDDPTPF----GTE---YDGDEPKLNNFFNEAMASDARLATSVMIQKCKN 139
             LS  + S      P PF    G +   +  D P L++  NEAMA DAR     +   C  
Sbjct:   147 LSSVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARRVVPRVAGACHG 206

Query:   140 VFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA 199
             +F+G+ ++VDV              FP ++   FDLPHV+   E  L  ++ V GDMF +
Sbjct:   207 LFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEV-LDGVENVEGDMFDS 265

Query:   200 ISPADAVVLK 209
             I   DA+ +K
Sbjct:   266 IPACDAIFIK 275

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 67/223 (30%), Positives = 106/223 (47%)

Query:     2 NLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKH--GKPMTLNELQKL 59
             NL+D     E  +A + +W ++F F +    KC+I L IP+ I  H   +P+TL+EL   
Sbjct:     7 NLLD-----EEAKASLDIWRYVFGFADIAAAKCAIDLKIPEAIENHPSSQPVTLSELSSA 61

Query:    60 VSSGNNNDEEQGYVLTNASKLLLKDNPLSQQLRSWFQNDDPTPFG-----TEYDGDE--- 111
             VS+  ++       L +    L K+ P    L + + N   TP       T+  G +   
Sbjct:    62 VSASPSHLRRIMRFLVHQG--LFKEVPTKDGLATGYTN---TPLSRRMMITKLHGKDLWA 116

Query:   112 ---PKL--NNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFP 166
                  L  +   NEAMA DAR     +   C+ +F+G+ ++VDV              FP
Sbjct:   117 FAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFDGVATVVDVGGGTGETMGILVKEFP 176

Query:   167 KLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
              ++   FDLPHV+  +   L  ++ V GDMF +I  +DAV++K
Sbjct:   177 WIKGFNFDLPHVIE-VAQVLDGVENVEGDMFDSIPASDAVIIK 218

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
 Identities = 36/104 (34%), Positives = 55/104 (52%)

Query:   106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 165
             EY G +P+ N  FN  M++ + +    +++  K  FEGL SLVDV              +
Sbjct:   162 EYHGTDPRFNKVFNNGMSNHSTITMKKILETYKG-FEGLTSLVDVGGGIGATLKMIVSKY 220

Query:   166 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
             P L+   FDLPHV+    S    +++VGGDMF ++   DA+ +K
Sbjct:   221 PNLKGINFDLPHVIEDAPSH-PGIEHVGGDMFVSVPKGDAIFMK 263

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018662001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (357 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	5e-41
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	3e-10
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	1e-06
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.002

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  138 bits (351), Expect = 5e-41
 Identities = 60/167 (35%), Positives = 85/167 (50%), Gaps = 26/167 (15%)

Query: 67  DEEQGYVLTNASKLLLKDNPLSQ------------------QLRSWFQNDDPTP---FGT 105
              + Y LT ASKLL+K                         L+   +   P     FG 
Sbjct: 2   RGGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFGM 61

Query: 106 ---EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIA 162
              EY G +P+ N  FN AMA+ +RL    +++     F GL+SLVDVGGGTG  A AI 
Sbjct: 62  PFFEYLGADPEFNRVFNRAMAAHSRLVMKKILE-TAFDFSGLSSLVDVGGGTGALAAAIV 120

Query: 163 KAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
           +A+P ++   FDLPHV+    S    +++VGGD F+++  ADA++LK
Sbjct: 121 RAYPHIKGIVFDLPHVIADAPS-ADRVEFVGGDFFESVPEADAILLK 166

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 19/27 (70%), Positives = 24/27 (88%)

Query: 30 MTLKCSIQLGIPDIINKHGKPMTLNEL 56
          M LKC+I+LGIPDII KHGKP++ +EL
Sbjct: 1  MVLKCAIELGIPDIIAKHGKPLSPSEL 27

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 9/99 (9%)

Query: 117 FFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP 176
           +F E   S+A+ A  +++++ K   +G+  ++DVGGG G  + A+ K FP+L+ T  +LP
Sbjct: 125 YFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP 182

Query: 177 HVVNGLESDLV------NLKYVGGDMFK-AISPADAVVL 208
             ++ +  +         ++ +  D++K +   ADAV+ 
Sbjct: 183 GAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLF 221

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVV-----NGLESDLVNLKYVGGDMFKA 199
            ++D+G GTG+ A  +A+ FP    T  DL P ++     N   +    + +V GD   A
Sbjct: 4   RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63

Query: 200 IS---PADAVVL 208
           +      DAV +
Sbjct: 64  LDLLEGFDAVFI 75

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.94
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.94
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.89
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.17
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.9
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.9
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.88
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.86
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.86
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.84
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.84
PRK06922	677	hypothetical protein; Provisional	98.83
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.81
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.8
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.77
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.73
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.72
COG2890	280	HemK Methylase of polypeptide chain release factor	98.71
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.71
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.7
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.69
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.68
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.67
PRK04457	262	spermidine synthase; Provisional	98.66
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.65
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.64
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.64
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.64
PLN02244	340	tocopherol O-methyltransferase	98.63
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.63
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.62
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.62
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.62
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.61
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.6
PRK05785	226	hypothetical protein; Provisional	98.59
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.59
PRK11207	197	tellurite resistance protein TehB; Provisional	98.57
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.56
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.56
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.56
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.56
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.56
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.55
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.55
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.53
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.53
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.53
PRK08317	241	hypothetical protein; Provisional	98.53
PLN02336	475	phosphoethanolamine N-methyltransferase	98.49
PLN03075	296	nicotianamine synthase; Provisional	98.48
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.48
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.47
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.47
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.47
COG4123	248	Predicted O-methyltransferase [General function pr	98.46
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.45
PRK06202	232	hypothetical protein; Provisional	98.45
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.45
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.45
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.44
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.43
PRK07402	196	precorrin-6B methylase; Provisional	98.42
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.42
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.41
PHA03411	279	putative methyltransferase; Provisional	98.4
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.38
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.38
PLN02490	340	MPBQ/MSBQ methyltransferase	98.38
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.37
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.36
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.35
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.34
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.33
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.3
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.29
KOG1271	227	consensus Methyltransferases [General function pre	98.29
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.28
PHA03412	241	putative methyltransferase; Provisional	98.28
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.28
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.26
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.25
PLN02366	308	spermidine synthase	98.22
PRK12335	287	tellurite resistance protein TehB; Provisional	98.22
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.21
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.2
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.19
PLN02672	1082	methionine S-methyltransferase	98.19
PRK14968	188	putative methyltransferase; Provisional	98.19
PRK14967	223	putative methyltransferase; Provisional	98.19
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.18
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.18
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.17
PRK01581	374	speE spermidine synthase; Validated	98.15
PLN02336	475	phosphoethanolamine N-methyltransferase	98.15
PRK00811	283	spermidine synthase; Provisional	98.13
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.12
PRK04266	226	fibrillarin; Provisional	98.12
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.1
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.1
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.09
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.09
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.08
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.06
KOG2904	328	consensus Predicted methyltransferase [General fun	98.04
TIGR03438	301	probable methyltransferase. This model represents	98.02
PRK03612	521	spermidine synthase; Provisional	98.02
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.02
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.01
PRK04148	134	hypothetical protein; Provisional	98.01
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.0
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.99
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.98
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.97
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.96
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.94
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.92
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.91
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.9
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.9
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.9
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.87
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.85
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.84
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.83
TIGR00438	188	rrmJ cell division protein FtsJ.	97.83
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.82
PLN02823	336	spermine synthase	97.81
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.8
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.78
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.78
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.71
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.71
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	97.69
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.68
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.67
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.65
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.65
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.63
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.63
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.61
PTZ00146	293	fibrillarin; Provisional	97.6
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.58
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.53
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.53
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.53
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.5
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.47
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.47
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.46
PRK00536	262	speE spermidine synthase; Provisional	97.45
PLN02476	278	O-methyltransferase	97.45
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.44
KOG2899	288	consensus Predicted methyltransferase [General fun	97.42
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.4
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.39
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.39
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.38
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.38
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.38
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.38
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.36
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.35
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.29
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.29
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.21
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.19
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.19
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.15
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.13
PF13679	141	Methyltransf_32: Methyltransferase domain	97.13
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.12
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.04
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.02
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.98
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.94
COG4122	219	Predicted O-methyltransferase [General function pr	96.92
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	96.88
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.79
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.7
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	96.69
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.68
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.65
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.62
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	96.55
KOG3010	261	consensus Methyltransferase [General function pred	96.54
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.42
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.41
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.4
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.33
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.3
KOG2361	264	consensus Predicted methyltransferase [General fun	96.27
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.21
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.16
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.08
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.08
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.97
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	95.96
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.94
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.91
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.84
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.4
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	95.28
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.22
KOG2730	263	consensus Methylase [General function prediction o	95.13
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	95.12
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.85
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	94.78
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	94.74
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.51
KOG3115	249	consensus Methyltransferase-like protein [General	94.46
COG2265	432	TrmA SAM-dependent methyltransferases related to t	94.39
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	94.2
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	94.02
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	93.88
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	93.82
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	93.78
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	93.77
COG4076	252	Predicted RNA methylase [General function predicti	93.7
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	93.6
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	93.33
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	92.94
KOG4300	252	consensus Predicted methyltransferase [General fun	92.42
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	92.26
PRK10742	250	putative methyltransferase; Provisional	92.05
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	91.41
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	90.53
KOG4058	199	consensus Uncharacterized conserved protein [Funct	90.5
COG3897	218	Predicted methyltransferase [General function pred	90.44
PF14338	92	Mrr_N: Mrr N-terminal domain	90.35
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	89.87
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	89.78
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	89.78
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	89.64
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	89.54
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	89.28
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	88.91
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	88.81
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	88.66
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	88.44
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	88.42
COG0742	187	N6-adenine-specific methylase [DNA replication, re	88.16
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	88.03
COG1565	370	Uncharacterized conserved protein [Function unknow	87.85
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	87.17
COG2521	287	Predicted archaeal methyltransferase [General func	86.27
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	86.26
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	86.1
COG4742	260	Predicted transcriptional regulator [Transcription	85.6
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	84.55
COG2520	341	Predicted methyltransferase [General function pred	84.04
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	83.01
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	82.85
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	82.72
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	82.32
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	81.98
KOG2940	325	consensus Predicted methyltransferase [General fun	81.88
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	81.84
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	80.15

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.94  E-value=4.6e-27  Score=190.57  Aligned_cols=139  Identities=37%  Similarity=0.661  Sum_probs=118.4

Q ss_pred             CCCCceecCHhhhhhhcCCC-cc-----------------cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHH
Q 046346           67 DEEQGYVLTNASKLLLKDNP-LS-----------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEA  121 (209)
Q Consensus        67 ~~~~~y~~t~~s~~l~~~~~-~~-----------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~  121 (209)
                      +++++|+||+.|+.|+.+++ .+                 .+|.+++++|. ++|..       +|++++|+..+.|+.+
T Consensus         1 ~~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~   79 (241)
T PF00891_consen    1 KEGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAA   79 (241)
T ss_dssp             SSTEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHH
T ss_pred             CCCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHH
Confidence            46789999999998776655 22                 68889999886 54533       6778899999999999


Q ss_pred             HHhhhHhhH-HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCC
Q 046346          122 MASDARLAT-SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAI  200 (209)
Q Consensus       122 m~~~~~~~~-~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~  200 (209)
                      |...+.... +.+.+.++  |++..+|||||||+|.++.+++++||+++++++|+|+|++.+++ .+||++++||||+++
T Consensus        80 m~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~  156 (241)
T PF00891_consen   80 MAEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPL  156 (241)
T ss_dssp             HHHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCC
T ss_pred             HHhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhh
Confidence            999888776 78888898  88999999999999999999999999999999999999999986 999999999999999


Q ss_pred             CCCcEEEeC
Q 046346          201 SPADAVVLK  209 (209)
Q Consensus       201 p~~D~~~l~  209 (209)
                      |.+|+|+||
T Consensus       157 P~~D~~~l~  165 (241)
T PF00891_consen  157 PVADVYLLR  165 (241)
T ss_dssp             SSESEEEEE
T ss_pred             ccccceeee
Confidence            999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.94  E-value=4e-26  Score=191.27  Aligned_cols=175  Identities=23%  Similarity=0.393  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCceecCHhhhhhhcC-CCc---c
Q 046346           28 NSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQGYVLTNASKLLLKD-NPL---S   88 (209)
Q Consensus        28 ~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~y~~t~~s~~l~~~-~~~---~   88 (209)
                      ...+|++|+++||||+|.+  +|.|++|||+               |+++|+++..+++|++|+.++.+..+ ++.   +
T Consensus         3 ~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~~~~~~~~~~   80 (306)
T TIGR02716         3 EFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLH   80 (306)
T ss_pred             hHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhccCCccchhhh
Confidence            4689999999999999986  7999999999               78999977778999999999755443 321   0


Q ss_pred             ----------------cchhhhhhcCCCCCccc--cccCCCcHHHHHHHHHHH-hhhHhhHHHHHHhccccccCCCeEEE
Q 046346           89 ----------------QQLRSWFQNDDPTPFGT--EYDGDEPKLNNFFNEAMA-SDARLATSVMIQKCKNVFEGLNSLVD  149 (209)
Q Consensus        89 ----------------~~l~~~l~~~~~~~f~~--~~~~~~~~~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~~vlD  149 (209)
                                      ..+.++++++  ++|+.  .+.+..++.. .|...|. .......+.+++.++  +++..+|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~r~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vlD  155 (306)
T TIGR02716        81 QTPVAKAMAFLADDFYMGLSQAVRGQ--KNFKGQVPYPPVTREDN-LYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMID  155 (306)
T ss_pred             cCchHHHHHHHHHHHHHhHHHHhcCC--cccccccCCCCCCHHHH-HhHHHHHHhcchhHHHHHHHHcC--CCCCCEEEE
Confidence                            3455666632  34543  2222333333 3444444 444455566777777  788899999


Q ss_pred             ecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCCCcEEEeC
Q 046346          150 VGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISPADAVVLK  209 (209)
Q Consensus       150 vGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~~D~~~l~  209 (209)
                      ||||+|.++..+++++|+++++++|+|++++.+++      ..+||+++.+|+++ ++|.+|+|+++
T Consensus       156 iG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~  222 (306)
T TIGR02716       156 VGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC  222 (306)
T ss_pred             eCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeE
Confidence            99999999999999999999999999999988764      46799999999997 67779999864

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.89  E-value=4.7e-22  Score=164.94  Aligned_cols=193  Identities=30%  Similarity=0.433  Sum_probs=155.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH--------------------HHhCCCCC---CC
Q 046346           12 PLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK--------------------LVSSGNNN---DE   68 (209)
Q Consensus        12 ~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~--------------------L~~~g~~e---~~   68 (209)
                      ..+...+++++++++..++++.+|+||||||.|..++ +  +.|||.                    |++.+++.   ..
T Consensus         3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~-~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~   79 (342)
T KOG3178|consen    3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAG-S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG   79 (342)
T ss_pred             hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC-C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec
Confidence            3456688999999999999999999999999999853 2  666665                    67777622   11


Q ss_pred             CCceecCHhhhhhhcCCC-cc-----------------cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHH
Q 046346           69 EQGYVLTNASKLLLKDNP-LS-----------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMA  123 (209)
Q Consensus        69 ~~~y~~t~~s~~l~~~~~-~~-----------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~  123 (209)
                      ...|.+++.++++..++. .|                 ..+.++++.++ .+|..       +|...+......|+++|.
T Consensus        80 ~~~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~  158 (342)
T KOG3178|consen   80 GEVYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMS  158 (342)
T ss_pred             ceeeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHH
Confidence            228999999987664332 22                 45666666664 23322       666777777889999999


Q ss_pred             hhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCCCCC
Q 046346          124 SDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPA  203 (209)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~p~~  203 (209)
                      ..+....+.+++.+.. |++....||||||.|..+..++..||+++++.+|+|.+++.|....+.|+.+.||+|.+.|.+
T Consensus       159 ~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~  237 (342)
T KOG3178|consen  159 FLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKG  237 (342)
T ss_pred             HHHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCc
Confidence            9998888888888863 888999999999999999999999999999999999999998864367999999999999999


Q ss_pred             cEEEeC
Q 046346          204 DAVVLK  209 (209)
Q Consensus       204 D~~~l~  209 (209)
                      |+|+||
T Consensus       238 daI~mk  243 (342)
T KOG3178|consen  238 DAIWMK  243 (342)
T ss_pred             CeEEEE
Confidence            999986

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.17  E-value=1.3e-10  Score=82.65  Aligned_cols=66  Identities=27%  Similarity=0.459  Sum_probs=56.5

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccC-CC-CCC-CCcEEEeC
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDM-FK-AIS-PADAVVLK  209 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~-~~-~~p-~~D~~~l~  209 (209)
                      ..+|||||||+|.++..+++++|..+++++|. |++++.+++      ..+||+++.+|+ +. +.+ .+|++++.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~   77 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICS   77 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEEC
Confidence            47899999999999999999999999999999 788887775      468999999999 33 333 49999863

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.90  E-value=1e-08  Score=83.85  Aligned_cols=74  Identities=22%  Similarity=0.325  Sum_probs=61.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC--CCcEEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PADAVV  207 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p--~~D~~~  207 (209)
                      ..+++.+.  .....+|||||||+|.++..+++++|+.+++++|+ |.+++.|++  .+++++.+|+.+-.+  .+|+|+
T Consensus        19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~~~~~fD~v~   94 (255)
T PRK14103         19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--RGVDARTGDVRDWKPKPDTDVVV   94 (255)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--cCCcEEEcChhhCCCCCCceEEE
Confidence            45666666  56678999999999999999999999999999999 888988873  468999999865222  399998


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      .
T Consensus        95 ~   95 (255)
T PRK14103         95 S   95 (255)
T ss_pred             E
Confidence            6

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.90  E-value=6.7e-09  Score=80.99  Aligned_cols=73  Identities=26%  Similarity=0.469  Sum_probs=59.7

Q ss_pred             HHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC-CcEE
Q 046346          134 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP-ADAV  206 (209)
Q Consensus       134 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~-~D~~  206 (209)
                      +..++  .....+|||||||+|.++..+++++|+.+++++|. +.+++.+++     ...+++++.+|...+++. +|++
T Consensus        24 ~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v  101 (187)
T PRK08287         24 LSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI  101 (187)
T ss_pred             HHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence            34454  55678999999999999999999999999999999 778877764     135799999998666665 9998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       102 ~~  103 (187)
T PRK08287        102 FI  103 (187)
T ss_pred             EE
Confidence            75

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.88  E-value=9.2e-09  Score=82.90  Aligned_cols=67  Identities=25%  Similarity=0.337  Sum_probs=58.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-----CCCeEEEEccCCC-CCCC--CcEEEeC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-----LVNLKYVGGDMFK-AISP--ADAVVLK  209 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~~ri~~~~gD~~~-~~p~--~D~~~l~  209 (209)
                      ...+|||||||||.++..+++..++.+++++|. +.|++.|++-     ...|+|+.+|+.+ |+|.  +|+|.++
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~  126 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTIS  126 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEee
Confidence            579999999999999999999999999999999 7999998861     1239999999988 8886  9999863

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.86  E-value=2.4e-08  Score=81.59  Aligned_cols=77  Identities=19%  Similarity=0.359  Sum_probs=63.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC--CCcEE
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PADAV  206 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p--~~D~~  206 (209)
                      ...++..++  ..+..+|||||||+|.++..+++++|..+++++|. +.+++.+++...+++++.+|+.+-.+  .+|++
T Consensus        20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v   97 (258)
T PRK01683         20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI   97 (258)
T ss_pred             HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence            345566665  56778999999999999999999999999999999 78898888666789999999876323  38998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      +.
T Consensus        98 ~~   99 (258)
T PRK01683         98 FA   99 (258)
T ss_pred             EE
Confidence            75

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.86  E-value=1e-08  Score=77.26  Aligned_cols=66  Identities=20%  Similarity=0.375  Sum_probs=55.1

Q ss_pred             CCCeEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C--CC-CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIA-KAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~-~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~--~p-~~D~~~l  208 (209)
                      +..+|||+|||+|.++..++ +.+|..+++++|+ +.+++.|++     ..++++|..+|+++ +  ++ .+|+++.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~   79 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIIS   79 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEE
Confidence            46799999999999999999 5689999999999 888988875     24589999999998 4  33 4999875

...

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.84  E-value=8.2e-09  Score=80.96  Aligned_cols=75  Identities=20%  Similarity=0.374  Sum_probs=64.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC--CCcEEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PADAVV  207 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p--~~D~~~  207 (209)
                      ..++..++  .....+|+|+|||+|+....|++++|....+++|- |+|++.|++....++|..+|.-+=.|  ..|+++
T Consensus        20 ~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf   97 (257)
T COG4106          20 RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF   97 (257)
T ss_pred             HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence            45677777  77899999999999999999999999999999998 89999998778899999999876333  367664

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.84  E-value=2.5e-08  Score=81.18  Aligned_cols=67  Identities=21%  Similarity=0.310  Sum_probs=56.3

Q ss_pred             cCCCeEEEecCCccHHHHHHHH--HCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCCCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAK--AFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~--~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~~D~~~l  208 (209)
                      .+..+|||||||+|..+..+++  .+|+.+++++|. |.+++.|++      ...+++++.+|+.+ +.+.+|++++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~  131 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVL  131 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEeh
Confidence            4568999999999999999988  469999999999 899988875      24589999999976 5556888764

>PRK06922 hypothetical protein; Provisional

Probab=98.83  E-value=2.1e-08  Score=90.63  Aligned_cols=101  Identities=16%  Similarity=0.236  Sum_probs=71.9

Q ss_pred             cccCCCcHHHHHHHHHHHhhhHhh--HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhc
Q 046346          106 EYDGDEPKLNNFFNEAMASDARLA--TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGL  182 (209)
Q Consensus       106 ~~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a  182 (209)
                      +++...++...+|...|.......  .......++  +.+..+|||||||+|..+..+++++|+.+++++|+ +.+++.|
T Consensus       381 d~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~A  458 (677)
T PRK06922        381 DFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTL  458 (677)
T ss_pred             HHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            445566667777777665533221  111223344  44678999999999999999999999999999999 5678877


Q ss_pred             cc----CCCCeEEEEccCCC-C--CC-C-CcEEEe
Q 046346          183 ES----DLVNLKYVGGDMFK-A--IS-P-ADAVVL  208 (209)
Q Consensus       183 ~~----~~~ri~~~~gD~~~-~--~p-~-~D~~~l  208 (209)
                      ++    ...+++++.+|..+ +  ++ + +|+|+.
T Consensus       459 rarl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs  493 (677)
T PRK06922        459 KKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY  493 (677)
T ss_pred             HHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence            64    23578889999865 2  33 3 899975

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.81  E-value=1.5e-08  Score=80.22  Aligned_cols=67  Identities=18%  Similarity=0.339  Sum_probs=58.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      .+..+|||||||+|..+..+++..|..+++++|+ +++++.|++...++++..+|++++.+.  +|+++.
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~  111 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLT  111 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEE
Confidence            4567899999999999999999999999999999 789999886456788999999886653  899975

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.80  E-value=2.6e-08  Score=76.64  Aligned_cols=66  Identities=29%  Similarity=0.446  Sum_probs=56.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-P-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-~-~D~~~l  208 (209)
                      ...++||+|||+|.++..+++++|+.+++.+|+ +.+++.++.     ..+.++++.+|++++.+ . +|+|+.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~  104 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVS  104 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEE
Confidence            578999999999999999999999999999999 777877764     12239999999999876 3 999975

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00740 methyltransferase, putative

Probab=98.77  E-value=4.6e-08  Score=79.16  Aligned_cols=67  Identities=18%  Similarity=0.259  Sum_probs=56.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCCCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~--~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~~D~~~l  208 (209)
                      .+..+|||||||+|..+..++++  +|+.+++++|+ +.+++.|++      ...+++++.+|+.+ +++.+|+++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~  128 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVIL  128 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEee
Confidence            45679999999999999999997  48899999999 889988874      23589999999987 5666887754

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.73  E-value=5.1e-08  Score=83.83  Aligned_cols=75  Identities=19%  Similarity=0.286  Sum_probs=59.3

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C--CCCeEEEEccCCCCCCC
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D--LVNLKYVGGDMFKAISP  202 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~--~~ri~~~~gD~~~~~p~  202 (209)
                      .+++.++  .....+|||+|||+|.++..+++++|+.+++.+|. +.+++.|++      .  ..+++++.+|.++.++.
T Consensus       219 llL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~  296 (378)
T PRK15001        219 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  296 (378)
T ss_pred             HHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence            3455555  22346999999999999999999999999999999 577777764      1  24799999999886643


Q ss_pred             --CcEEEe
Q 046346          203 --ADAVVL  208 (209)
Q Consensus       203 --~D~~~l  208 (209)
                        +|+|+.
T Consensus       297 ~~fDlIls  304 (378)
T PRK15001        297 FRFNAVLC  304 (378)
T ss_pred             CCEEEEEE
Confidence              899975

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.72  E-value=4.5e-08  Score=81.40  Aligned_cols=66  Identities=27%  Similarity=0.398  Sum_probs=57.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      +..+|+|+|||+|.++..+++++|+.+++++|+ +.+++.|++      ..++|+++.+|+++++|.  +|+++.
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~  195 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVS  195 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEE
Confidence            357899999999999999999999999999999 788887764      246899999999887663  899875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=3.2e-08  Score=82.05  Aligned_cols=63  Identities=29%  Similarity=0.450  Sum_probs=55.3

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC-CCeEEEEccCCCCCCC-CcEEEe
Q 046346          146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL-VNLKYVGGDMFKAISP-ADAVVL  208 (209)
Q Consensus       146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~-~ri~~~~gD~~~~~p~-~D~~~l  208 (209)
                      +|+|||||||.+++.+++++|+++++..|+ |.+++.|+.    .. .|+.++.+|+|+++++ +|+++.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVs  182 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVS  182 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEe
Confidence            899999999999999999999999999999 788888764    12 6777888899998886 999874

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.71  E-value=9.3e-08  Score=76.80  Aligned_cols=75  Identities=21%  Similarity=0.281  Sum_probs=59.0

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC-
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP-  202 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~-  202 (209)
                      .+++.++  .....+|||+|||+|.++..+++.+ |..+++++|+ |.+++.+++     ..++++++.+|+.+ ++|. 
T Consensus        36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence            3444444  4566899999999999999999986 6789999999 788877664     23689999999977 5553 


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|++++
T Consensus       114 ~fD~V~~  120 (231)
T TIGR02752       114 SFDYVTI  120 (231)
T ss_pred             CccEEEE
Confidence             899875

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.70  E-value=4.5e-08  Score=82.24  Aligned_cols=64  Identities=28%  Similarity=0.405  Sum_probs=56.1

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      .+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++      ..+||+++.+|+++.+|.  +|+|+.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEE
Confidence            6899999999999999999999999999999 788887764      246899999999887663  899974

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.69  E-value=3.4e-08  Score=79.78  Aligned_cols=68  Identities=25%  Similarity=0.419  Sum_probs=49.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      .....+|||||||||.++..++++. |+.+++++|. +.+++.|++     ...+|+++.+|..+ |+|.  +|++++
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~  122 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTC  122 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEH
Confidence            3456799999999999999999885 6789999999 899998875     24599999999987 7775  899975

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.68  E-value=2e-07  Score=76.61  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=56.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc--------CCCCeEEEEccCCC-CCCC--CcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK-AISP--ADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~--------~~~ri~~~~gD~~~-~~p~--~D~~~  207 (209)
                      ..+..+|||||||+|.++..+++++ |+.+++++|. +++++.|++        ..++++++.+|+.+ |+|.  +|+++
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            3456899999999999999999885 6789999999 788888763        13589999999876 6664  89987


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       151 ~  151 (261)
T PLN02233        151 M  151 (261)
T ss_pred             E
Confidence            5

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.67  E-value=2.5e-07  Score=66.53  Aligned_cols=74  Identities=23%  Similarity=0.380  Sum_probs=57.0

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---CCCC-
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AISP-  202 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~~p~-  202 (209)
                      +++.+.  .....+++|+|||+|.++..+++++|+.+++++|. +.+++.+++     ...+++++.+|...   ..+. 
T Consensus        11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (124)
T TIGR02469        11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE   88 (124)
T ss_pred             HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence            444444  44457999999999999999999999999999999 677776653     23579999998764   2333 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|++++
T Consensus        89 ~D~v~~   94 (124)
T TIGR02469        89 PDRVFI   94 (124)
T ss_pred             CCEEEE
Confidence            899875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK04457 spermidine synthase; Provisional

Probab=98.66  E-value=6.4e-08  Score=79.55  Aligned_cols=67  Identities=18%  Similarity=0.300  Sum_probs=57.8

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~p~-~D~~~l  208 (209)
                      +.+++|||||||+|.++..+++.+|+.+++++|+ |++++.|++      ..+|++++.+|..+   ..+. +|+|++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            4568999999999999999999999999999999 899998875      24789999999865   3454 999985

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.65  E-value=1.6e-07  Score=78.06  Aligned_cols=64  Identities=25%  Similarity=0.481  Sum_probs=55.6

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      .+|+|+|||+|.++..+++.+|+.+++++|+ +.+++.|++      ..+|++++.+|++++++.  +|+++.
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvs  188 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVS  188 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEE
Confidence            6899999999999999999999999999999 778877764      235799999999987763  899874

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.64  E-value=1.9e-07  Score=72.10  Aligned_cols=73  Identities=26%  Similarity=0.337  Sum_probs=59.3

Q ss_pred             HHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---CCCCc
Q 046346          134 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---ISPAD  204 (209)
Q Consensus       134 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~p~~D  204 (209)
                      +..+.  ..+..+++|||||+|.++++++..+|..+++.+|. +++++..+.     ..++++.+.||..+.   +|.+|
T Consensus        27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d  104 (187)
T COG2242          27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD  104 (187)
T ss_pred             HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence            34454  56678999999999999999999999999999998 666665443     368999999998774   44589


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      .+++
T Consensus       105 aiFI  108 (187)
T COG2242         105 AIFI  108 (187)
T ss_pred             EEEE
Confidence            9986

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.64  E-value=3e-07  Score=71.81  Aligned_cols=66  Identities=29%  Similarity=0.333  Sum_probs=54.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ...+|||||||+|..+..+++++|+.+++.+|. +.+++.|++     ..++++++.+|+.+ +.+. +|+++.
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~  118 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTS  118 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEE
Confidence            468999999999999999999999999999999 677877664     23459999999876 2233 999985

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.64  E-value=1.7e-07  Score=77.12  Aligned_cols=76  Identities=18%  Similarity=0.347  Sum_probs=61.0

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCC--
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP--  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~--  202 (209)
                      ...+++.+.  ..+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.|++   ..++++++.+|+.+ ++|.  
T Consensus        41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~  117 (263)
T PTZ00098         41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT  117 (263)
T ss_pred             HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence            455666665  6777899999999999999998876 678999999 677777764   24689999999987 5664  


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+|+.
T Consensus       118 FD~V~s  123 (263)
T PTZ00098        118 FDMIYS  123 (263)
T ss_pred             eEEEEE
Confidence            899875

>PLN02244 tocopherol O-methyltransferase

Probab=98.63  E-value=2.3e-07  Score=79.04  Aligned_cols=66  Identities=18%  Similarity=0.262  Sum_probs=54.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ....+|||||||+|..+..+++++ +.+++++|+ +.+++.+++      ..++++|+.+|+.+ ++|.  +|+|+.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s  192 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWS  192 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEE
Confidence            456899999999999999999998 779999999 677776653      34689999999987 5653  899874

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.63  E-value=1.6e-07  Score=75.20  Aligned_cols=66  Identities=27%  Similarity=0.438  Sum_probs=54.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ...+|||||||+|.++..+++.+|..+++++|. +.+++.+++ ..++++++.+|+.+ +++.  +|+++.
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~  104 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVS  104 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEE
Confidence            357999999999999999999999999999999 677766664 34589999999976 4443  899875

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.62  E-value=6.5e-08  Score=67.76  Aligned_cols=62  Identities=29%  Similarity=0.500  Sum_probs=48.8

Q ss_pred             EEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCC--CCcEEEe
Q 046346          147 LVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PADAVVL  208 (209)
Q Consensus       147 vlDvGgG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p--~~D~~~l  208 (209)
                      |||+|||+|..+..+++.+   |+.+.+++|+ +++++.+++    ...+++|+.+|+.+ +++  .+|+|+.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEE
Confidence            7999999999999999997   6789999999 788888775    23589999999977 332  3899975

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.62  E-value=1.2e-07  Score=73.77  Aligned_cols=65  Identities=25%  Similarity=0.312  Sum_probs=52.5

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCC-CCcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-PADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p-~~D~~~l  208 (209)
                      ..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++     ..++++++.+|+.+ +.. .+|+|+.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s  115 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITS  115 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEe
Confidence            67999999999999999999999999999999 566665543     23579999999876 222 3999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.62  E-value=4.1e-07  Score=74.07  Aligned_cols=91  Identities=16%  Similarity=0.250  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHhhhH------hhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCC
Q 046346          114 LNNFFNEAMASDAR------LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDL  186 (209)
Q Consensus       114 ~~~~f~~~m~~~~~------~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~  186 (209)
                      ..+.|.++...+..      ..+..+++.++  .....+|||+|||+|.++..+++.  ..+++++|+ |.+++.+++..
T Consensus         9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~   84 (251)
T PRK10258          9 IAAAFGRAAAHYEQHAELQRQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD   84 (251)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC
Confidence            45567766654322      23344455554  335689999999999999988875  468999999 88898887544


Q ss_pred             CCeEEEEccCCC-CCCC--CcEEEe
Q 046346          187 VNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       187 ~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ..+.++.+|+.+ +++.  +|+++.
T Consensus        85 ~~~~~~~~d~~~~~~~~~~fD~V~s  109 (251)
T PRK10258         85 AADHYLAGDIESLPLATATFDLAWS  109 (251)
T ss_pred             CCCCEEEcCcccCcCCCCcEEEEEE
Confidence            456789999866 5553  899874

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.61  E-value=1.6e-07  Score=75.05  Aligned_cols=64  Identities=19%  Similarity=0.228  Sum_probs=53.6

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ++|||||||+|..+..+++.+|+.+++++|+ +.+++.+++      ..++++++.+|+.+ +++. +|+++.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~   73 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFG   73 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeeh
Confidence            4799999999999999999999999999999 667766654      35789999999976 4555 999863

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.60  E-value=2.1e-07  Score=80.61  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=55.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCC-CC---CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA-IS---PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~-~p---~~D~~~l  208 (209)
                      ...+++|+|||+|.++..+++++|+.+++++|+ +.+++.|++    ...+++++.+|++++ .|   .+|+++.
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVS  325 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVS  325 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEE
Confidence            446999999999999999999999999999999 888887774    345899999999874 33   2899875

>PRK05785 hypothetical protein; Provisional

Probab=98.59  E-value=3.4e-07  Score=73.65  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=51.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ...+|||||||+|.++..+++++ +.+++++|. +++++.|++.   ..++.+|+.+ |+|.  +|+++.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---~~~~~~d~~~lp~~d~sfD~v~~  116 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---DDKVVGSFEALPFRDKSFDVVMS  116 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---cceEEechhhCCCCCCCEEEEEe
Confidence            46899999999999999999998 678999999 8999988742   3467888876 6654  899875

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.59  E-value=4.8e-07  Score=71.67  Aligned_cols=75  Identities=17%  Similarity=0.213  Sum_probs=57.3

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC--
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--  201 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p--  201 (209)
                      .+++.+.  ..+..+|||||||+|.++..+++..+ ..+++.+|. +++++.|++      ...+++++.+|+.+.+|  
T Consensus        63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~  140 (205)
T PRK13944         63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH  140 (205)
T ss_pred             HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence            3444444  44568999999999999999999875 558999999 677776664      23579999999987544  


Q ss_pred             -CCcEEEe
Q 046346          202 -PADAVVL  208 (209)
Q Consensus       202 -~~D~~~l  208 (209)
                       .+|+|++
T Consensus       141 ~~fD~Ii~  148 (205)
T PRK13944        141 APFDAIIV  148 (205)
T ss_pred             CCccEEEE
Confidence             3899875

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.57  E-value=3e-07  Score=72.35  Aligned_cols=74  Identities=23%  Similarity=0.323  Sum_probs=56.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP-  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~-  202 (209)
                      +.+++.++  .....+|||+|||+|..+..++++  ..+++++|+ +.+++.+++     ...++++...|+.+ +++. 
T Consensus        20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (197)
T PRK11207         20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE   95 (197)
T ss_pred             HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence            45566665  445689999999999999999987  468999999 777877664     12458899999876 4554 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+|+.
T Consensus        96 fD~I~~  101 (197)
T PRK11207         96 YDFILS  101 (197)
T ss_pred             cCEEEE
Confidence            999874

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.56  E-value=5.9e-07  Score=71.59  Aligned_cols=76  Identities=18%  Similarity=0.282  Sum_probs=59.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC--
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--  201 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p--  201 (209)
                      ..+++.++  ..+..+|||||||+|.++..+++..+ +.+++.+|+ |++++.|++     ..++++++.+|..+.++  
T Consensus        67 ~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~  144 (215)
T TIGR00080        67 AMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL  144 (215)
T ss_pred             HHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence            34455555  55678999999999999999999875 467899998 788887764     23689999999987433  


Q ss_pred             -CCcEEEe
Q 046346          202 -PADAVVL  208 (209)
Q Consensus       202 -~~D~~~l  208 (209)
                       .+|++++
T Consensus       145 ~~fD~Ii~  152 (215)
T TIGR00080       145 APYDRIYV  152 (215)
T ss_pred             CCCCEEEE
Confidence             3999986

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.56  E-value=2.6e-07  Score=75.55  Aligned_cols=65  Identities=17%  Similarity=0.264  Sum_probs=52.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC--CCC-C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AIS-P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~--~~p-~-~D~~~l  208 (209)
                      ....+|||||||+|.++..++++  ..+++++|+ +.+++.|++      ..++++++.+|+.+  +.+ . +|++++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~  118 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILF  118 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence            45679999999999999999997  467899999 788888774      24689999999865  333 3 899975

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.56  E-value=6.4e-07  Score=71.35  Aligned_cols=77  Identities=16%  Similarity=0.277  Sum_probs=60.0

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-  201 (209)
                      ...+++.++  ..+..+|||||||+|..+..+++.. ++.+++.+|. +++++.+++     ...+++++.+|.++.++ 
T Consensus        65 ~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~  142 (212)
T PRK13942         65 VAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE  142 (212)
T ss_pred             HHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence            344555555  5677899999999999999998885 4568999998 788887765     13579999999987543 


Q ss_pred             --CCcEEEe
Q 046346          202 --PADAVVL  208 (209)
Q Consensus       202 --~~D~~~l  208 (209)
                        .+|+|++
T Consensus       143 ~~~fD~I~~  151 (212)
T PRK13942        143 NAPYDRIYV  151 (212)
T ss_pred             CCCcCEEEE
Confidence              2899976

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.56  E-value=9.6e-07  Score=70.46  Aligned_cols=92  Identities=15%  Similarity=0.128  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCC
Q 046346          115 NNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLV  187 (209)
Q Consensus       115 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~  187 (209)
                      ..++...|..........+++.+.....+..+|||||||+|.++..+++.  ..+++++|. |.+++.|++      ...
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~  104 (219)
T TIGR02021        27 VSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAG  104 (219)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            34444444322222333344443311235789999999999999999886  457899998 788887764      125


Q ss_pred             CeEEEEccCCCCCCCCcEEEe
Q 046346          188 NLKYVGGDMFKAISPADAVVL  208 (209)
Q Consensus       188 ri~~~~gD~~~~~p~~D~~~l  208 (209)
                      +++|..+|+.+....+|+++.
T Consensus       105 ~i~~~~~d~~~~~~~fD~ii~  125 (219)
T TIGR02021       105 NVEFEVNDLLSLCGEFDIVVC  125 (219)
T ss_pred             ceEEEECChhhCCCCcCEEEE
Confidence            899999998763344998874

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.56  E-value=5.9e-07  Score=72.29  Aligned_cols=65  Identities=26%  Similarity=0.375  Sum_probs=56.5

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCC------CeEEEeec-hHHHhhccc--------CCCCeEEEEccCCC-CCCC--CcE
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPK------LECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK-AISP--ADA  205 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~------l~~~~~Dl-p~v~~~a~~--------~~~ri~~~~gD~~~-~~p~--~D~  205 (209)
                      .-++|||+||||-++-.+++.-+.      .+++++|+ |++++.+.+        ...|+.|+++|.-+ |+|.  +|+
T Consensus       101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~  180 (296)
T KOG1540|consen  101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDA  180 (296)
T ss_pred             CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCccee
Confidence            479999999999999999999888      78999999 899987664        24569999999977 7886  899


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |.+
T Consensus       181 yTi  183 (296)
T KOG1540|consen  181 YTI  183 (296)
T ss_pred             EEE
Confidence            986

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.55  E-value=3.6e-07  Score=62.31  Aligned_cols=60  Identities=25%  Similarity=0.332  Sum_probs=49.8

Q ss_pred             EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          148 VDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       148 lDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ||||||+|..+..++++ |..+++++|. +.+++.+++  ...++++..+|+.+ ++|.  +|+++.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~   66 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFS   66 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccc
Confidence            79999999999999999 9999999999 677888776  35567899999987 6664  899875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.55  E-value=4.9e-07  Score=74.64  Aligned_cols=65  Identities=18%  Similarity=0.370  Sum_probs=54.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCC---eEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKL---ECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l---~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~  207 (209)
                      ...+|||||||+|.++..+++.+|..   +++++|+ +.+++.|++...++++..+|..+ +++.  +|+|+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~  156 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAII  156 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEE
Confidence            45789999999999999999998864   6799999 78888887656789999999877 6653  89986

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.53  E-value=2.1e-07  Score=83.21  Aligned_cols=65  Identities=17%  Similarity=0.312  Sum_probs=56.3

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      ..+|||||||+|.++..+++++|+.+++++|+ |.+++.|++      ..++++++.+|+++.++.  +|+++.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvs  212 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVS  212 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEE
Confidence            46899999999999999999999999999999 778887774      346899999999886653  899875

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.53  E-value=5.2e-07  Score=76.87  Aligned_cols=74  Identities=18%  Similarity=0.307  Sum_probs=57.2

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCC-CcEE
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISP-ADAV  206 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~-~D~~  206 (209)
                      +++.++  .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++    ..-+.+++.+|.++..+. +|+|
T Consensus       188 Ll~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI  265 (342)
T PRK09489        188 LLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI  265 (342)
T ss_pred             HHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence            344454  22345899999999999999999999999999999 677877764    122457788998876665 9999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      +.
T Consensus       266 vs  267 (342)
T PRK09489        266 IS  267 (342)
T ss_pred             EE
Confidence            85

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.53  E-value=5.7e-07  Score=72.91  Aligned_cols=66  Identities=29%  Similarity=0.482  Sum_probs=55.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      ...+|+|+|||+|.++..+++.+|+.+++++|. +.+++.++.     ..++++++.+|++++++.  +|+++.
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~  160 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVS  160 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEE
Confidence            346899999999999999999999999999998 777777664     234799999999886643  899874

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK08317 hypothetical protein; Provisional

Probab=98.53  E-value=7.7e-07  Score=71.15  Aligned_cols=75  Identities=21%  Similarity=0.243  Sum_probs=59.3

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC--
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP--  202 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~--  202 (209)
                      .+++.++  ..+..+|||+|||+|.++..+++.+ |..+++++|+ +..++.+++    ...++++..+|+.+ +++.  
T Consensus        10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~   87 (241)
T PRK08317         10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS   87 (241)
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence            3445555  5667899999999999999999998 7889999999 666776654    24679999999876 5543  


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+++.
T Consensus        88 ~D~v~~   93 (241)
T PRK08317         88 FDAVRS   93 (241)
T ss_pred             ceEEEE
Confidence            899875

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.49  E-value=6.5e-07  Score=79.50  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=58.5

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC--C
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP--A  203 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~--~  203 (209)
                      .+++.+.  .....+|||||||+|..+..+++++ +.+++++|+ +.+++.|++    ...+++|+.+|+++ ++|.  +
T Consensus       257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f  333 (475)
T PLN02336        257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF  333 (475)
T ss_pred             HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence            3445454  4566899999999999999999877 779999999 677777653    34689999999987 5654  8


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+|+.
T Consensus       334 D~I~s  338 (475)
T PLN02336        334 DVIYS  338 (475)
T ss_pred             EEEEE
Confidence            99874

>PLN03075 nicotianamine synthase; Provisional

Probab=98.48  E-value=6.9e-07  Score=74.23  Aligned_cols=66  Identities=17%  Similarity=0.192  Sum_probs=52.6

Q ss_pred             CCCeEEEecCCccHHHH--HHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEEccCCCCC---CCCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAK--AIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKAI---SPADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~--~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~~~---p~~D~~~l  208 (209)
                      ++++|+|||||+|-++.  .+++.+|+.+++++|. |++++.|++       ..+|++|..+|..+..   ..+|+|++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            78999999999884433  3445789999999999 788887775       3578999999998733   24999986

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=8.3e-07  Score=73.38  Aligned_cols=76  Identities=16%  Similarity=0.290  Sum_probs=60.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC-C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP-A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~-~  203 (209)
                      +-+++.++  .....+|+|+|||.|.+++.+++.+|+.+.+.+|. ...++.|++     ..++.++...|.+++.+. +
T Consensus       148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf  225 (300)
T COG2813         148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF  225 (300)
T ss_pred             HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence            44567776  44445999999999999999999999999999999 466777774     123336788899998776 9


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+|+.
T Consensus       226 d~Iis  230 (300)
T COG2813         226 DLIIS  230 (300)
T ss_pred             cEEEe
Confidence            99875

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.47  E-value=2.3e-06  Score=68.56  Aligned_cols=67  Identities=27%  Similarity=0.275  Sum_probs=54.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p-~-~D~~~l  208 (209)
                      .+..+|+|||||+|.++..+++.+| ..+++++|. +.+++.+++      ...+++++.+|+.+ +.+ . +|+|++
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~  127 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTI  127 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEE
Confidence            3457999999999999999999998 789999999 677776664      24679999999987 333 3 899874

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.47  E-value=1.1e-06  Score=72.28  Aligned_cols=67  Identities=27%  Similarity=0.430  Sum_probs=56.6

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-~-~D~~~l  208 (209)
                      .+..+|+|+|||+|.++..+++.+|..+++++|+ +.+++.+++     ...+++++.+|++++.+ . +|+++.
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~  181 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVS  181 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEE
Confidence            4567999999999999999999999999999999 677776664     24689999999998765 3 899874

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.47  E-value=4.2e-08  Score=68.36  Aligned_cols=61  Identities=26%  Similarity=0.408  Sum_probs=40.1

Q ss_pred             EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCC---CeEEEEccCCCCCC--CCcEEEe
Q 046346          148 VDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLV---NLKYVGGDMFKAIS--PADAVVL  208 (209)
Q Consensus       148 lDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~---ri~~~~gD~~~~~p--~~D~~~l  208 (209)
                      ||||||+|.++..+++++|..+.+++|+ |.+++.+++     ...   ++++...|.++..+  .+|+|++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~   72 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVA   72 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehh
Confidence            7999999999999999999999999999 788877765     122   34555555555433  4999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.46  E-value=3.3e-07  Score=74.09  Aligned_cols=68  Identities=13%  Similarity=0.223  Sum_probs=57.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CCC--CCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AIS--PADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~p--~~D~~~l  208 (209)
                      .+...+|+|+|||+|.++..+++++++++++++++ +.+.+.|++      ..+||+++..|+-+   ..+  .+|+|+.
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~  121 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC  121 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence            34589999999999999999999999999999999 677777775      57899999999876   222  2788875

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.45  E-value=1e-06  Score=67.58  Aligned_cols=74  Identities=18%  Similarity=0.365  Sum_probs=56.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCC--C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP--A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~--~  203 (209)
                      ..+++.++  .....++||||||+|.++..++++  ..+++++|+ +.+++.+++   ..++++++.+|+.+ +.+.  +
T Consensus         3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence            34556665  556679999999999999999998  467899999 567777664   24589999999987 4554  6


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |.++.
T Consensus        79 d~vi~   83 (169)
T smart00650       79 YKVVG   83 (169)
T ss_pred             CEEEE
Confidence            77753

>PRK06202 hypothetical protein; Provisional

Probab=98.45  E-value=2e-06  Score=69.29  Aligned_cols=67  Identities=24%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             cCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhcccC--CCCeEEEEccC--CCCCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDM--FKAISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~----~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~--~~~~p~-~D~~~l  208 (209)
                      .+..+|||||||+|.++..|++.    .|+.+++++|+ |.+++.|++.  ..++++...+.  +...+. +|+++.
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~  135 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTS  135 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEE
Confidence            45689999999999999988764    56789999999 8899888752  24566655543  222233 899875

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.45  E-value=4.8e-07  Score=71.04  Aligned_cols=66  Identities=21%  Similarity=0.278  Sum_probs=53.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---C-CCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---A-ISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~-~p~--~D~~~l  208 (209)
                      ...++||||||+|.++..+++++|+..++++|+ +.+++.|++     ...+++++.+|+.+   . +|.  +|.+++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence            457999999999999999999999999999999 677776653     23589999999865   1 342  677764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.45  E-value=6e-07  Score=70.98  Aligned_cols=66  Identities=23%  Similarity=0.306  Sum_probs=53.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC--C--CC-C-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A--IS-P-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~--~--~p-~-~D~~~l  208 (209)
                      ...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++     ...+++++.+|+.+  +  ++ . +|++++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~  117 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL  117 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence            568999999999999999999999999999999 778877664     23689999999832  2  43 3 788864

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.44  E-value=1e-06  Score=68.12  Aligned_cols=64  Identities=25%  Similarity=0.388  Sum_probs=52.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~-~D~~~l  208 (209)
                      ...+|+|+|||+|.++..++++.+  +++.+|+ |.+++.+++    ...+++++.+|+++..+. +|+++.
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~   88 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILF   88 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEE
Confidence            347899999999999999999987  8999998 788877764    234688999999875444 999875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.43  E-value=5.6e-07  Score=64.32  Aligned_cols=63  Identities=22%  Similarity=0.235  Sum_probs=53.3

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CCCC--CcEEEe
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AISP--ADAVVL  208 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~p~--~D~~~l  208 (209)
                      .+|+|+|||+|.++..+++++ ..+++++|+ |..++.++.      ..+|++++.+|+++   +.+.  +|+|+.
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT   76 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence            589999999999999999999 889999999 777777764      35789999999987   2433  899985

...

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.42  E-value=2e-06  Score=67.52  Aligned_cols=74  Identities=24%  Similarity=0.368  Sum_probs=56.5

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---CCC-C
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS-P  202 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~~p-~  202 (209)
                      +++.++  .....+|||+|||+|.++..+++..|..+++.+|+ |.+++.+++     ...+++++.+|..+   .++ .
T Consensus        32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (196)
T PRK07402         32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA  109 (196)
T ss_pred             HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence            445554  45668999999999999999999999999999999 788887764     23579999999865   232 2


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|.+++
T Consensus       110 ~d~v~~  115 (196)
T PRK07402        110 PDRVCI  115 (196)
T ss_pred             CCEEEE
Confidence            566543

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.42  E-value=1.4e-06  Score=71.52  Aligned_cols=75  Identities=19%  Similarity=0.344  Sum_probs=58.2

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCCC
Q 046346          129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISPA  203 (209)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~~  203 (209)
                      ....+++.++  ..+..+|||||||+|.++..++++.  .+++++|+ +.+++.+++   ..++++++.+|+++ ++|.+
T Consensus        17 ~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~   92 (258)
T PRK14896         17 VVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEF   92 (258)
T ss_pred             HHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhc
Confidence            3455566555  5567899999999999999999994  47899998 677777664   24689999999987 66667


Q ss_pred             cEEE
Q 046346          204 DAVV  207 (209)
Q Consensus       204 D~~~  207 (209)
                      |.++
T Consensus        93 d~Vv   96 (258)
T PRK14896         93 NKVV   96 (258)
T ss_pred             eEEE
Confidence            7765

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.41  E-value=6.5e-07  Score=69.74  Aligned_cols=70  Identities=16%  Similarity=0.236  Sum_probs=53.9

Q ss_pred             hccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCCCCCC--CcEEEeC
Q 046346          136 KCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAISP--ADAVVLK  209 (209)
Q Consensus       136 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~~~p~--~D~~~l~  209 (209)
                      .++  -....+++|+|||.|.++..|+.++  -+.++.|. +..++.|++   ..++|+|+..|+-+.+|.  ||+|+++
T Consensus        38 aLp--~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S  113 (201)
T PF05401_consen   38 ALP--RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS  113 (201)
T ss_dssp             HHT--TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred             hcC--ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence            466  5677899999999999999999997  36788999 888998886   357899999999887775  9999875

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PHA03411 putative methyltransferase; Provisional

Probab=98.40  E-value=9.4e-07  Score=72.55  Aligned_cols=65  Identities=17%  Similarity=0.285  Sum_probs=55.9

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCC-CC-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAI-SP-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~-p~-~D~~~l  208 (209)
                      ..+|||+|||+|.++..++++.+..+++++|+ |.+++.+++...+++++.+|+++.. +. +|+|+.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIs  132 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVIS  132 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEE
Confidence            46999999999999999999998889999999 7888888865568999999998743 33 999875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.38  E-value=1.4e-06  Score=72.04  Aligned_cols=64  Identities=16%  Similarity=0.298  Sum_probs=51.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--CCCeEEEEccCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDMFK  198 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~~~  198 (209)
                      ..+++.++  .....+|||||||+|.++..++++.+  +++++|. +.+++.+++.  .++++++.+|+.+
T Consensus        32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~   98 (272)
T PRK00274         32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALK   98 (272)
T ss_pred             HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhc
Confidence            44555555  55668999999999999999999987  7888998 7778777642  3689999999987

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.38  E-value=1.7e-06  Score=74.53  Aligned_cols=66  Identities=17%  Similarity=0.232  Sum_probs=52.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCC---CCCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMF---KAISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~---~~~p~--~D~~~l  208 (209)
                      ....+||||||+|.++..+++++|+..++++|+ +.++..+.+     ...+|.++.+|..   +.+|.  .|.+++
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~l  198 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFV  198 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEE
Confidence            457999999999999999999999999999998 566655442     2467999999973   34553  777765

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.38  E-value=1.7e-06  Score=73.49  Aligned_cols=66  Identities=32%  Similarity=0.400  Sum_probs=55.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--CCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ...+|||||||+|.++..+++.+|..+++++|. +.+++.|++.  ..+++++.+|+.+ +++.  +|+|+.
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs  184 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVS  184 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEE
Confidence            457999999999999999999999899999999 7888877752  3578999999876 5553  899875

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.37  E-value=9.3e-07  Score=72.23  Aligned_cols=65  Identities=23%  Similarity=0.332  Sum_probs=53.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--CCCeEEEEccCCCCCC----C-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDMFKAIS----P-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~~~~~p----~-~D~~~l  208 (209)
                      ..++||+|||+|.++..+++.+|..+++++|. |.+++.|++.  ..+++++.+|+++.++    . +|+++.
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~  159 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAA  159 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEE
Confidence            45899999999999999999999999999999 7888887751  2236889999987543    3 899875

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.36  E-value=2.8e-06  Score=67.40  Aligned_cols=75  Identities=21%  Similarity=0.264  Sum_probs=58.3

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCC--CC
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PA  203 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p--~~  203 (209)
                      .+++.+.  ..+..+|||+|||+|..+..+++++|. .+++++|. +.+++.+++   ...+++++.+|+.+ +.+  .+
T Consensus        30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  107 (223)
T TIGR01934        30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSF  107 (223)
T ss_pred             HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcE
Confidence            3444444  346789999999999999999999997 78999999 677776664   34689999999987 343  28


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |++++
T Consensus       108 D~i~~  112 (223)
T TIGR01934       108 DAVTI  112 (223)
T ss_pred             EEEEE
Confidence            98864

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.35  E-value=3.1e-06  Score=69.71  Aligned_cols=76  Identities=20%  Similarity=0.173  Sum_probs=60.5

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC
Q 046346          129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS  201 (209)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p  201 (209)
                      ....+++.+.  +.+..+|||||||-|.+++..+++| +.+++++++ ++..+.+++      ..++|++.-.|+-+-.+
T Consensus        60 k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e  136 (283)
T COG2230          60 KLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE  136 (283)
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence            3456777787  8899999999999999999999999 999999999 555555543      45789999999865333


Q ss_pred             CCcEEE
Q 046346          202 PADAVV  207 (209)
Q Consensus       202 ~~D~~~  207 (209)
                      .+|-|+
T Consensus       137 ~fDrIv  142 (283)
T COG2230         137 PFDRIV  142 (283)
T ss_pred             ccceee
Confidence            377664

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.34  E-value=2.2e-06  Score=67.34  Aligned_cols=74  Identities=18%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~  203 (209)
                      ..+++.++  .....+|||||||+|..+..++++  ..+++++|+ |.+++.+++    ..-++++...|+.. +++. +
T Consensus        20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f   95 (195)
T TIGR00477        20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY   95 (195)
T ss_pred             HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence            34555555  345689999999999999999986  468999999 677776653    12247777888754 3444 8


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+++.
T Consensus        96 D~I~~  100 (195)
T TIGR00477        96 DFIFS  100 (195)
T ss_pred             CEEEE
Confidence            98864

Part of a tellurite-reducing operon tehA and tehB

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.33  E-value=4.1e-06  Score=68.94  Aligned_cols=68  Identities=12%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             cCCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhhcccC--------------------------
Q 046346          142 EGLNSLVDVGGGTGT----AAKAIAKAFP-----KLECTCFDL-PHVVNGLESD--------------------------  185 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~----~~~~l~~~~P-----~l~~~~~Dl-p~v~~~a~~~--------------------------  185 (209)
                      .+..+|+|+|||+|.    +++.+++.+|     +.++++.|+ +.+++.|++.                          
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345799999999996    5677777766     578999999 7888887741                          


Q ss_pred             ------CCCeEEEEccCCCC-CC-C-CcEEEeC
Q 046346          186 ------LVNLKYVGGDMFKA-IS-P-ADAVVLK  209 (209)
Q Consensus       186 ------~~ri~~~~gD~~~~-~p-~-~D~~~l~  209 (209)
                            ..+|+|..+|+.++ .| . +|+|+.+
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~cr  210 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCR  210 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEec
Confidence                  14799999999984 33 2 9999863

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.30  E-value=4.7e-06  Score=66.65  Aligned_cols=65  Identities=22%  Similarity=0.285  Sum_probs=50.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCCCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~~D~~~l  208 (209)
                      .+..+|||||||+|.++..+++..+  +++++|+ +.+++.|++      ..+++++..+|+-..-..+|+++.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~  133 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVC  133 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEE
Confidence            4567999999999999999998865  4899999 788887764      125899999994322233898864

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.29  E-value=3.3e-06  Score=71.42  Aligned_cols=65  Identities=17%  Similarity=0.080  Sum_probs=49.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhcc---c---CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HVVNGLE---S---DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp-~v~~~a~---~---~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ...+|||||||+|.++..+++.+|. +++++|.. .++..++   .   ...+|+++.+|+.+ +.+. +|+|+.
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s  195 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFS  195 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEE
Confidence            4589999999999999999999877 59999973 3443322   1   24589999999865 4444 899874

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.29  E-value=3.1e-06  Score=65.03  Aligned_cols=66  Identities=20%  Similarity=0.182  Sum_probs=51.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC--CCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA--ISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~--~p~-~D~~~l  208 (209)
                      .+.+|||+|||+|+++..|++.-=+.+.+++|- +..++.|+.      ..+.|+|+..|+++|  .++ +|+++=
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD  142 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD  142 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEee
Confidence            345999999999999999999976555677887 566665553      456699999999995  344 888863

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.28  E-value=4.7e-06  Score=65.55  Aligned_cols=68  Identities=18%  Similarity=0.252  Sum_probs=54.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CC-CCCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AI-SPADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~-p~~D~~~l  208 (209)
                      .....+|+|+|||+|.++..+++.. |..+++.+|+ +.+++.+++      ..++++++.+|+.+   .. +.+|++++
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence            5567899999999999999998874 6789999999 788877653      24689999999875   23 23899875

>PHA03412 putative methyltransferase; Provisional

Probab=98.28  E-value=2.3e-06  Score=68.84  Aligned_cols=65  Identities=17%  Similarity=0.241  Sum_probs=54.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ..+|||+|||+|.++..+++++   +..+++++|+ +.+++.|++...+++++.+|+.. +++. +|+|+.
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIs  120 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAIS  120 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEE
Confidence            5799999999999999999986   4678999999 78888888656679999999986 3443 999874

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.28  E-value=1.7e-06  Score=67.23  Aligned_cols=65  Identities=18%  Similarity=0.299  Sum_probs=50.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCC---CCC--CcEEEeC
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA---ISP--ADAVVLK  209 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~---~p~--~D~~~l~  209 (209)
                      ++..+|||+|||.|.++..|.+. .+.++.++|+ ++-+..+-  ...++.+.+|.-+.   +|.  +|.++|+
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv--~rGv~Viq~Dld~gL~~f~d~sFD~VIls   82 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV--ARGVSVIQGDLDEGLADFPDQSFDYVILS   82 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH--HcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence            46799999999999999888775 7999999998 33333332  46678899998773   554  8999885

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.26  E-value=8.5e-06  Score=64.68  Aligned_cols=73  Identities=18%  Similarity=0.277  Sum_probs=54.6

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC---C
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P  202 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p---~  202 (209)
                      .++..+.  ..+..+|||||||+|..+..+++...  +++.+|. +.+++.+++     ...+++++.+|+++.++   .
T Consensus        69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  144 (212)
T PRK00312         69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP  144 (212)
T ss_pred             HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence            3444444  45678999999999999998887764  6888888 677776664     13469999999987544   2


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|++++
T Consensus       145 fD~I~~  150 (212)
T PRK00312        145 FDRILV  150 (212)
T ss_pred             cCEEEE
Confidence            999875

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.25  E-value=3.9e-06  Score=69.35  Aligned_cols=74  Identities=16%  Similarity=0.132  Sum_probs=51.0

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC-
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p-  201 (209)
                      ...+++.++  ..+..+|||||||-|.++..++++| +.+++++.+ ++..+.+++      +.+++++...|+.+ ++ 
T Consensus        51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~  126 (273)
T PF02353_consen   51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPG  126 (273)
T ss_dssp             HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred             HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCC
Confidence            455667776  7788999999999999999999999 889999998 444554432      56899999999865 44 


Q ss_pred             CCcEEE
Q 046346          202 PADAVV  207 (209)
Q Consensus       202 ~~D~~~  207 (209)
                      .+|.|+
T Consensus       127 ~fD~Iv  132 (273)
T PF02353_consen  127 KFDRIV  132 (273)
T ss_dssp             S-SEEE
T ss_pred             CCCEEE
Confidence            488875

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02366 spermidine synthase

Probab=98.22  E-value=3.6e-06  Score=70.71  Aligned_cols=67  Identities=19%  Similarity=0.292  Sum_probs=53.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCC-C-Cc
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS-P-AD  204 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p-~-~D  204 (209)
                      .+++++||+||||.|..+.++++. |. .+++++|+ +.|++.+++         ..+|++++.+|.++   ..| . +|
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence            356899999999999999999865 65 57899999 668888875         14699999999754   443 3 99


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      +|++
T Consensus       168 vIi~  171 (308)
T PLN02366        168 AIIV  171 (308)
T ss_pred             EEEE
Confidence            9985

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.22  E-value=6.3e-06  Score=68.60  Aligned_cols=65  Identities=18%  Similarity=0.262  Sum_probs=50.6

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ....+|||||||+|..+..++++  ..+++++|. +.+++.+++    ..-++++..+|+.+ +++. +|+|+.
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~  190 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILS  190 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEE
Confidence            34569999999999999999986  578999999 677776653    23378888999876 3454 999874

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.21  E-value=6.4e-06  Score=67.29  Aligned_cols=71  Identities=17%  Similarity=0.321  Sum_probs=54.6

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCCCc
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISPAD  204 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~~D  204 (209)
                      ...+++.++  ..+..+|+|||||+|.++..++++++.  ++++|. +.+++.++.   ..++++++.+|+.+ +++.+|
T Consensus        18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d   93 (253)
T TIGR00755        18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP   93 (253)
T ss_pred             HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence            345566665  566789999999999999999999975  777888 666766654   24789999999987 454455

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.20  E-value=5.8e-06  Score=68.13  Aligned_cols=68  Identities=16%  Similarity=0.353  Sum_probs=54.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      .....+|||||||+|..+..+++.. |..+++++|+ +.+++.|++     ..+++++..+|+.+ +++.  +|+++.
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~  152 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS  152 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence            4567899999999999988877764 6678999999 788888775     23689999999876 5553  898874

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.19  E-value=3.7e-06  Score=71.05  Aligned_cols=63  Identities=22%  Similarity=0.183  Sum_probs=50.0

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-P-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p-~-~D~~~l  208 (209)
                      ..+|||||||+|.++..+++  ++.+++++|. +.+++.|+.      ...+|+++.+|+.+ +.+ . +|+++.
T Consensus       132 g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~  204 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLS  204 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEE
Confidence            46899999999999998886  4678999999 788887763      23589999999855 333 3 999974

>PLN02672 methionine S-methyltransferase

Probab=98.19  E-value=3e-06  Score=81.09  Aligned_cols=64  Identities=20%  Similarity=0.275  Sum_probs=53.7

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------------------CCCeEEEEccCCCCCC
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------------------LVNLKYVGGDMFKAIS  201 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~------------------~~ri~~~~gD~~~~~p  201 (209)
                      ..+|+|||||+|.+++.+++++|+.+++.+|+ |.+++.|++   .                  .+||+|+.+|+++..+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            36899999999999999999999999999999 777776643   1                  2589999999998653


Q ss_pred             ----CCcEEE
Q 046346          202 ----PADAVV  207 (209)
Q Consensus       202 ----~~D~~~  207 (209)
                          .+|+|+
T Consensus       199 ~~~~~fDlIV  208 (1082)
T PLN02672        199 DNNIELDRIV  208 (1082)
T ss_pred             ccCCceEEEE
Confidence                379886

>PRK14968 putative methyltransferase; Provisional

Probab=98.19  E-value=8.2e-06  Score=63.07  Aligned_cols=65  Identities=22%  Similarity=0.351  Sum_probs=52.1

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCC-eEEEEccCCCCCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVN-LKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~r-i~~~~gD~~~~~p~--~D~~~l  208 (209)
                      .+..++||+|||+|.++..++++  ..+++++|+ |.+++.+++      ..++ ++++.+|+.++++.  +|+++.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~   96 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILF   96 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEE
Confidence            45678999999999999999998  578999999 677777653      1233 89999999886654  898874

>PRK14967 putative methyltransferase; Provisional

Probab=98.19  E-value=6.1e-06  Score=66.11  Aligned_cols=67  Identities=25%  Similarity=0.238  Sum_probs=51.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      .....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++    ...+++++.+|+.+.++.  +|+|++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~  107 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVS  107 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEE
Confidence            344579999999999999999886 3358899999 677776654    234688999999876553  899875

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.18  E-value=8.6e-06  Score=68.04  Aligned_cols=74  Identities=19%  Similarity=0.393  Sum_probs=56.9

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p  201 (209)
                      ...+++...  ..+..+|+|||||+|.++..++++..  +++++|+ +.+++.+++      ..++++++.+|+.+ +++
T Consensus        25 ~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~  100 (294)
T PTZ00338         25 LDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP  100 (294)
T ss_pred             HHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence            345566555  55678999999999999999999854  5888998 677776654      24789999999987 566


Q ss_pred             CCcEEE
Q 046346          202 PADAVV  207 (209)
Q Consensus       202 ~~D~~~  207 (209)
                      .+|+++
T Consensus       101 ~~d~Vv  106 (294)
T PTZ00338        101 YFDVCV  106 (294)
T ss_pred             ccCEEE
Confidence            677765

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.18  E-value=1.2e-05  Score=67.91  Aligned_cols=74  Identities=16%  Similarity=0.353  Sum_probs=56.6

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC---C
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P  202 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p---~  202 (209)
                      +++.++  ..+..+|||||||+|.++..+++..+. -+++++|. +++++.|++     ..++++++.+|..+..+   .
T Consensus        72 ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         72 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence            344444  456689999999999999999999875 46889998 677777664     23579999999876433   3


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|++++
T Consensus       150 fD~Ii~  155 (322)
T PRK13943        150 YDVIFV  155 (322)
T ss_pred             ccEEEE
Confidence            899875

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.17  E-value=5.7e-06  Score=64.80  Aligned_cols=63  Identities=17%  Similarity=0.250  Sum_probs=48.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC---CCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~---~~p~--~D~~~l  208 (209)
                      ...+|||||||+|.++..+++. ...+++++|. +++++.++.  .+++++.+|+.+   +++.  +|++++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~--~~~~~~~~d~~~~l~~~~~~sfD~Vi~   81 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA--RGVNVIQGDLDEGLEAFPDKSFDYVIL   81 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH--cCCeEEEEEhhhcccccCCCCcCEEEE
Confidence            4579999999999999988876 4567889998 677777662  468889999865   2432  899986

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK01581 speE spermidine synthase; Validated

Probab=98.15  E-value=5e-06  Score=70.86  Aligned_cols=68  Identities=19%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------CCCCeEEEEccCCC---CCCC-C
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFK---AISP-A  203 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------------~~~ri~~~~gD~~~---~~p~-~  203 (209)
                      ..++++||+||||.|..+.++++..|..+++++|+ |+|++.|++            ..+|++++.+|..+   ..+. +
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            45678999999999999999998655678999999 788988884            25799999999876   2333 8


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+|++
T Consensus       228 DVIIv  232 (374)
T PRK01581        228 DVIII  232 (374)
T ss_pred             cEEEE
Confidence            99986

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.15  E-value=9.4e-06  Score=72.13  Aligned_cols=75  Identities=21%  Similarity=0.291  Sum_probs=56.9

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC---CCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK---AISP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~---~~p~  202 (209)
                      .+.+++.++  ..+..+|||||||+|.++..+++.+.  +++++|. +.+++.++.   ..++++++.+|+.+   ++|.
T Consensus        26 ~~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~  101 (475)
T PLN02336         26 RPEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD  101 (475)
T ss_pred             hhHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence            455566665  34567999999999999999999864  6889998 777776653   24689999999964   4453


Q ss_pred             --CcEEEe
Q 046346          203 --ADAVVL  208 (209)
Q Consensus       203 --~D~~~l  208 (209)
                        +|+|+.
T Consensus       102 ~~fD~I~~  109 (475)
T PLN02336        102 GSVDLIFS  109 (475)
T ss_pred             CCEEEEeh
Confidence              899875

>PRK00811 spermidine synthase; Provisional

Probab=98.13  E-value=5.2e-06  Score=68.99  Aligned_cols=67  Identities=21%  Similarity=0.276  Sum_probs=54.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------CCCCeEEEEccCCCC---CCC-CcEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFKA---ISP-ADAV  206 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~~ri~~~~gD~~~~---~p~-~D~~  206 (209)
                      +++++||+||||+|..+..+++..+..+++++|+ |.+++.|++          ..+|++++.+|..+-   -+. +|+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            4678999999999999999997655668999999 788888875          156899999998752   123 9999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       155 i~  156 (283)
T PRK00811        155 IV  156 (283)
T ss_pred             EE
Confidence            85

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.12  E-value=1.1e-05  Score=64.09  Aligned_cols=77  Identities=17%  Similarity=0.307  Sum_probs=57.4

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~  202 (209)
                      ...+++.++  ..+..+|||||+|+|..+..+++.. |.-+++.+|. |...+.|++     ...+|+++.+|-...+|.
T Consensus        61 ~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~  138 (209)
T PF01135_consen   61 VARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE  138 (209)
T ss_dssp             HHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred             HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence            345566666  6778999999999999999999885 4446888897 777777775     245899999999886664


Q ss_pred             ---CcEEEe
Q 046346          203 ---ADAVVL  208 (209)
Q Consensus       203 ---~D~~~l  208 (209)
                         +|.|++
T Consensus       139 ~apfD~I~v  147 (209)
T PF01135_consen  139 EAPFDRIIV  147 (209)
T ss_dssp             G-SEEEEEE
T ss_pred             CCCcCEEEE
Confidence               899875

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK04266 fibrillarin; Provisional

Probab=98.12  E-value=1.4e-05  Score=64.31  Aligned_cols=68  Identities=13%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCCC-----CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA-----ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~~-----~p~-~D~~~l  208 (209)
                      ..+..+|+|+|||+|.++..+++..+.-+++++|+ +++++.+.+   ...+|.++.+|..++     ++. +|+++.
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~  147 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ  147 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE
Confidence            55678999999999999999999998668999999 666653321   236799999998653     233 888863

>TIGR00452 methyltransferase, putative

Probab=98.10  E-value=1.7e-05  Score=66.89  Aligned_cols=74  Identities=14%  Similarity=0.001  Sum_probs=51.6

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcc---c---CCCCeEEEEccCCC-CC-CC
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE---S---DLVNLKYVGGDMFK-AI-SP  202 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~---~---~~~ri~~~~gD~~~-~~-p~  202 (209)
                      .++..+.  .....+|+|||||+|.++..+++.++. +++++|. +.++..++   +   ...++.+..+|+-+ +. +.
T Consensus       112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~  188 (314)
T TIGR00452       112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA  188 (314)
T ss_pred             HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence            3444443  334589999999999999999998775 7899997 44554322   1   24678888888754 22 24


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+|+.
T Consensus       189 FD~V~s  194 (314)
T TIGR00452       189 FDTVFS  194 (314)
T ss_pred             cCEEEE
Confidence            899874

Known examples to date are restricted to the proteobacteria.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.10  E-value=1.7e-05  Score=66.05  Aligned_cols=65  Identities=23%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~-~D~~~l  208 (209)
                      +..+|||||||+|.++..+++. +..+++++|+ |.+++.|++      ...++.+..+|.....+. +|+++.
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVva  231 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVA  231 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEE
Confidence            4589999999999999988865 4458999999 677777764      345677777764333333 899874

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.09  E-value=2.5e-05  Score=67.67  Aligned_cols=73  Identities=14%  Similarity=0.169  Sum_probs=55.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--CCCeEEEEccCCCCCCC-CcEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDMFKAISP-ADAV  206 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~~~~~p~-~D~~  206 (209)
                      ..+++.+.  ..+..+|||||||+|.++..+++++ +.+++++|+ +++++.|++.  ...+++...|+.+ ++. +|++
T Consensus       157 ~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~-l~~~fD~I  232 (383)
T PRK11705        157 DLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD-LNGQFDRI  232 (383)
T ss_pred             HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh-cCCCCCEE
Confidence            34455555  5667899999999999999999876 568999999 7888877652  2357888888754 343 8988


Q ss_pred             E
Q 046346          207 V  207 (209)
Q Consensus       207 ~  207 (209)
                      +
T Consensus       233 v  233 (383)
T PRK11705        233 V  233 (383)
T ss_pred             E
Confidence            6

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.09  E-value=2.1e-05  Score=61.53  Aligned_cols=73  Identities=19%  Similarity=0.319  Sum_probs=50.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~  203 (209)
                      +.+++.++  .-...++||+|||.|..+.-|+++  +..++.+|. +..++.+++    ..-.|+....|+.+ .+|. +
T Consensus        20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y   95 (192)
T PF03848_consen   20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY   95 (192)
T ss_dssp             HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred             HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence            34556666  456789999999999999999999  667899999 445554432    34459999999977 5665 8


Q ss_pred             cEEE
Q 046346          204 DAVV  207 (209)
Q Consensus       204 D~~~  207 (209)
                      |+|+
T Consensus        96 D~I~   99 (192)
T PF03848_consen   96 DFIV   99 (192)
T ss_dssp             EEEE
T ss_pred             CEEE
Confidence            9885

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.08  E-value=2.3e-05  Score=62.49  Aligned_cols=64  Identities=19%  Similarity=0.179  Sum_probs=49.3

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEEccCCC-C---
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFK-A---  199 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------~~~ri~~~~gD~~~-~---  199 (209)
                      ....++||+|||.|..+..|+++  +.+++++|+ |..++.+..                 ...+|+++.+|+++ +   
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            35579999999999999999987  677999999 666665321                 13579999999998 2   


Q ss_pred             CCCCcEEE
Q 046346          200 ISPADAVV  207 (209)
Q Consensus       200 ~p~~D~~~  207 (209)
                      .+.+|+++
T Consensus       111 ~~~fD~i~  118 (213)
T TIGR03840       111 LGPVDAVY  118 (213)
T ss_pred             CCCcCEEE
Confidence            23378775

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.06  E-value=1e-05  Score=71.38  Aligned_cols=65  Identities=17%  Similarity=0.195  Sum_probs=51.8

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC-----CC-C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA-----IS-P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~-----~p-~-~D~~~l  208 (209)
                      .+..+|||+|||+|.++..++++.  .+++++|. +++++.|++     ..++++|+.+|+.+.     ++ . +|++++
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~  373 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL  373 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence            455799999999999999999986  57899999 778887764     235799999998652     22 2 899986

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.04  E-value=2.5e-05  Score=63.62  Aligned_cols=66  Identities=15%  Similarity=0.267  Sum_probs=50.3

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEE----EccCCCCCC---C-CcEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYV----GGDMFKAIS---P-ADAV  206 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~----~gD~~~~~p---~-~D~~  206 (209)
                      .....++|+|||+|.++..++...|+.+++..|. +.++..|.+      +.+|+..+    ..|.+.+.|   + .|++
T Consensus       147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll  226 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL  226 (328)
T ss_pred             cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence            3456899999999999999999999999999999 455655443      57888877    556666543   2 5665


Q ss_pred             E
Q 046346          207 V  207 (209)
Q Consensus       207 ~  207 (209)
                      +
T Consensus       227 v  227 (328)
T KOG2904|consen  227 V  227 (328)
T ss_pred             e
Confidence            4

>TIGR03438 probable methyltransferase

Probab=98.02  E-value=2.2e-05  Score=65.80  Aligned_cols=56  Identities=14%  Similarity=0.272  Sum_probs=46.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc----C--CCCeEEEEccCCC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES----D--LVNLKYVGGDMFK  198 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~----~--~~ri~~~~gD~~~  198 (209)
                      +..+|||+|||+|..+..|+++.+ ..+++.+|+ +++++.+++    .  ..+|.++.+||.+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~  126 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ  126 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence            457899999999999999999998 688999999 677777653    1  2357789999987

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK03612 spermidine synthase; Provisional

Probab=98.02  E-value=1.3e-05  Score=72.16  Aligned_cols=66  Identities=24%  Similarity=0.456  Sum_probs=54.6

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc------------CCCCeEEEEccCCC---CCCC-C
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFK---AISP-A  203 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~------------~~~ri~~~~gD~~~---~~p~-~  203 (209)
                      +++++|+|||||+|..+.++++ +|. .+++++|+ |++++.+++            ..+|++++.+|.++   ..+. +
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            4678999999999999999997 566 79999999 899998875            13699999999876   2344 9


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+|++
T Consensus       375 DvIi~  379 (521)
T PRK03612        375 DVIIV  379 (521)
T ss_pred             CEEEE
Confidence            99985

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.02  E-value=3.8e-05  Score=61.07  Aligned_cols=62  Identities=18%  Similarity=0.308  Sum_probs=48.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEEccCCCC---------CCC--CcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA---------ISP--ADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~---------~p~--~D~~~  207 (209)
                      +.+..+|||||||+|.++..++++. |..+++++|+.++.     ...+++++.+|+.+.         ++.  +|+++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~  122 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVM  122 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEe
Confidence            3556799999999999999999987 45689999996632     134689999999873         332  88886

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.01  E-value=1.9e-05  Score=66.51  Aligned_cols=63  Identities=25%  Similarity=0.256  Sum_probs=49.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC----------CCCeEEEEccCCCCCCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD----------LVNLKYVGGDMFKAISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----------~~ri~~~~gD~~~~~p~-~D~~~l  208 (209)
                      ...+|||||||+|.++..++++  +.+++++|+ +.+++.|++.          ..+++|..+|+.+ ++. +|+|+.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~  218 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTC  218 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEE
Confidence            3579999999999999999987  568999999 6788877641          2468899999743 344 898864

>PRK04148 hypothetical protein; Provisional

Probab=98.01  E-value=2.9e-05  Score=57.15  Aligned_cols=70  Identities=16%  Similarity=0.235  Sum_probs=51.2

Q ss_pred             HHHHhccccccCCCeEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC----CCcE
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGT-AAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS----PADA  205 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~-~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p----~~D~  205 (209)
                      .+.+.+.  .....+++|||||+|. ++..|.+.  +..+++.|. |..++.+++  ..++++.+|.|++-+    .+|+
T Consensus         7 ~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~~~~y~~a~l   80 (134)
T PRK04148          7 FIAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPNLEIYKNAKL   80 (134)
T ss_pred             HHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCCHHHHhcCCE
Confidence            3444444  2234789999999996 88888865  568999999 777777763  346889999999643    2788


Q ss_pred             EE
Q 046346          206 VV  207 (209)
Q Consensus       206 ~~  207 (209)
                      ++
T Consensus        81 iy   82 (134)
T PRK04148         81 IY   82 (134)
T ss_pred             EE
Confidence            75

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=2.4e-05  Score=60.54  Aligned_cols=65  Identities=22%  Similarity=0.285  Sum_probs=50.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCCCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~~D~~~l  208 (209)
                      ..++|+|+|||||.++++.+-..|. +++++|+ |+.++.+++    +.++|.|+..|..+--..+|.++|
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvim  114 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIM  114 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEE
Confidence            4578999999999999998887665 6788888 788887764    567999999998653333666654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.99  E-value=2.3e-05  Score=65.42  Aligned_cols=62  Identities=26%  Similarity=0.289  Sum_probs=43.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC--CCcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p--~~D~~~  207 (209)
                      .+..+|||||||||.++++.++.... +++.+|+ |..++.|++      ..+++...   ...+.+  .+|+|+
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~~~~~~dlvv  230 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDLVEGKFDLVV  230 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCTCCS-EEEEE
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---EecccccccCCEEE
Confidence            45579999999999999999988543 7899999 777777764      35577552   122333  389886

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.98  E-value=2.7e-05  Score=63.58  Aligned_cols=60  Identities=32%  Similarity=0.403  Sum_probs=43.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCCCcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~~D~~~  207 (209)
                      ....+|+|||||+|.++..+++..+. +++++|+ |.+++.|++      ..+++.+..+|.     .+|+++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vv  184 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIV  184 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEE
Confidence            45689999999999999988776554 6899999 777877764      224455444432     367765

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.97  E-value=4.8e-05  Score=61.54  Aligned_cols=68  Identities=16%  Similarity=0.170  Sum_probs=55.1

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC---------CCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI---------SPA  203 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~---------p~~  203 (209)
                      ..++++|||||||+|.-+..+++..| +.+++.+|. |+.++.|++      ..++|+++.||..+-+         +.+
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            44689999999999999999998865 679999999 677777764      3579999999997621         239


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |++++
T Consensus       146 D~Vfi  150 (234)
T PLN02781        146 DFAFV  150 (234)
T ss_pred             CEEEE
Confidence            99875

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.96  E-value=2.2e-05  Score=66.29  Aligned_cols=64  Identities=17%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC--C-CC-CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A-IS-PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~--~-~p-~~D~~~l  208 (209)
                      ...+|||+|||+|.++..++++  ..+++++|. +.+++.|++     ..++++|+.+|+.+  . .. .+|++++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~  246 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLV  246 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence            3589999999999999999985  468999999 788877764     13579999999865  1 22 3899876

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.94  E-value=2.9e-05  Score=64.74  Aligned_cols=76  Identities=17%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-C--CCCeEEEEccCCC--C-C--
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-D--LVNLKYVGGDMFK--A-I--  200 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-~--~~ri~~~~gD~~~--~-~--  200 (209)
                      ..+++.+.  ..+...+||.+||.|.++..+++++| +.+++++|. |++++.|++ +  .+|++++.+||-+  . +  
T Consensus         9 ~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~   86 (296)
T PRK00050          9 DEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE   86 (296)
T ss_pred             HHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence            45566554  34557999999999999999999996 789999999 888888875 2  3699999999975  1 2  


Q ss_pred             --CCCcEEEe
Q 046346          201 --SPADAVVL  208 (209)
Q Consensus       201 --p~~D~~~l  208 (209)
                        +.+|.+++
T Consensus        87 ~~~~vDgIl~   96 (296)
T PRK00050         87 GLGKVDGILL   96 (296)
T ss_pred             CCCccCEEEE
Confidence              24788775

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.92  E-value=3.6e-05  Score=52.29  Aligned_cols=62  Identities=26%  Similarity=0.316  Sum_probs=49.1

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCC---CC-CcEEEe
Q 046346          146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---SP-ADAVVL  208 (209)
Q Consensus       146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~---p~-~D~~~l  208 (209)
                      +++|+|||.|..+..+++ .+..+.+++|. +..++.+++     ...++++..+|+.+..   +. +|+++.
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~   72 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIIS   72 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEE
Confidence            589999999999999998 77889999998 455555541     3568999999998843   23 898875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.91  E-value=3.9e-05  Score=60.36  Aligned_cols=54  Identities=20%  Similarity=0.373  Sum_probs=42.6

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK  198 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~  198 (209)
                      ..+||||||.|.++..+++++|+..++++|+ ...+..+..     ...++.++.+|...
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~   78 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE   78 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence            4999999999999999999999999999998 344433321     46789999998765

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.90  E-value=3.9e-05  Score=67.43  Aligned_cols=74  Identities=12%  Similarity=0.155  Sum_probs=56.8

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCC---C-CC-
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---I-SP-  202 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~---~-p~-  202 (209)
                      ++..++  .....+|||+|||+|..+..+++..++.+++.+|+ +.+++.+++    ..-+++++.+|..+.   . +. 
T Consensus       236 ~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~  313 (427)
T PRK10901        236 AATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP  313 (427)
T ss_pred             HHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence            334444  34568999999999999999999998889999999 777777664    233578999999762   2 23 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|.|++
T Consensus       314 fD~Vl~  319 (427)
T PRK10901        314 FDRILL  319 (427)
T ss_pred             CCEEEE
Confidence            899875

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.90  E-value=7.8e-05  Score=59.66  Aligned_cols=64  Identities=17%  Similarity=0.119  Sum_probs=49.6

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEEccCCCCC---
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFKAI---  200 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------~~~ri~~~~gD~~~~~---  200 (209)
                      ....+|||+|||.|..+..|+++  +.+++++|+ |..++.+..                 ...+|++..+|+++..   
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            34579999999999999999986  778999999 566665421                 1368999999999832   


Q ss_pred             -CCCcEEE
Q 046346          201 -SPADAVV  207 (209)
Q Consensus       201 -p~~D~~~  207 (209)
                       +.+|+++
T Consensus       114 ~~~fd~v~  121 (218)
T PRK13255        114 LADVDAVY  121 (218)
T ss_pred             CCCeeEEE
Confidence             3368776

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.90  E-value=3.5e-05  Score=68.00  Aligned_cols=68  Identities=19%  Similarity=0.284  Sum_probs=54.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~p~-~D~~~l  208 (209)
                      ..+..+|||+|||+|..+..+++.. |..+++.+|+ +..++.+++     ...+|+++.+|+.+.   ++. +|+|++
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~  326 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILV  326 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEE
Confidence            3456899999999999999999987 6789999999 677776654     124599999999762   344 899975

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.87  E-value=8.3e-05  Score=60.60  Aligned_cols=75  Identities=23%  Similarity=0.409  Sum_probs=58.0

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CC
Q 046346          129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AI  200 (209)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~  200 (209)
                      ....++..-+  ......||+||.|||.++..++++.  .+++.+++ |.++....+      .....+.+.|||++ ++
T Consensus        46 v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~  121 (315)
T KOG0820|consen   46 VIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL  121 (315)
T ss_pred             HHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence            3455666555  6778999999999999999999994  45777777 666554332      35789999999998 89


Q ss_pred             CCCcEEE
Q 046346          201 SPADAVV  207 (209)
Q Consensus       201 p~~D~~~  207 (209)
                      |.+|.++
T Consensus       122 P~fd~cV  128 (315)
T KOG0820|consen  122 PRFDGCV  128 (315)
T ss_pred             cccceee
Confidence            9888765

>TIGR00417 speE spermidine synthase

Probab=97.85  E-value=4.5e-05  Score=62.95  Aligned_cols=67  Identities=19%  Similarity=0.272  Sum_probs=53.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~~  207 (209)
                      +++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++         ..+|++++.+|.++   ..+. +|+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            4567999999999999999998776778999999 678887765         13689999999765   2233 89987


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       151 ~  151 (270)
T TIGR00417       151 V  151 (270)
T ss_pred             E
Confidence            5

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.00015  Score=57.26  Aligned_cols=74  Identities=16%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC--
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP--  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~--  202 (209)
                      ..+++.+.  .....+||+||||+|..+.-+++---  +++.+++ ++..+.|++     ...+|.+..+|-...+|.  
T Consensus        62 A~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a  137 (209)
T COG2518          62 ARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA  137 (209)
T ss_pred             HHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence            44556666  67789999999999999999988866  7888888 666777765     234699999999998775  


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       ||.|+.
T Consensus       138 PyD~I~V  144 (209)
T COG2518         138 PYDRIIV  144 (209)
T ss_pred             CcCEEEE
Confidence             899875

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=3.9e-05  Score=63.78  Aligned_cols=51  Identities=25%  Similarity=0.388  Sum_probs=38.5

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      .++.++....+..+++|||||||.++++.++-... +++++|+ |..++.|++
T Consensus       152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~e  203 (300)
T COG2264         152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARE  203 (300)
T ss_pred             HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHH
Confidence            34444433457899999999999999998887433 6888998 666777764

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.83  E-value=5.9e-05  Score=58.75  Aligned_cols=63  Identities=17%  Similarity=0.334  Sum_probs=48.8

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEEccCCCC---------CCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA---------ISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~---------~p~--~D~~~l  208 (209)
                      ..+..+|||+|||+|.++..+++++ +..+++++|+.+..     ...+++++.+|+.++         .+.  +|+++.
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~  104 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS  104 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence            3567899999999999999999987 66789999996533     135688899998752         232  898874

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.82  E-value=3.8e-05  Score=60.59  Aligned_cols=65  Identities=15%  Similarity=0.205  Sum_probs=49.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCC---C-CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S-PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~---p-~~D~~~l  208 (209)
                      ...+|||+|||+|.++.+++.+.. .+++.+|. +.+++.+++     ...+++++.+|+++.+   . .+|++++
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~  127 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFV  127 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEE
Confidence            357999999999999998766664 58999998 677766654     1357999999987633   2 2899986

>PLN02823 spermine synthase

Probab=97.81  E-value=5.4e-05  Score=64.37  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=55.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~~  207 (209)
                      +.+++||.||||.|..+.++++..+..+++++|+ |.+++.|++         ..+|++++.+|.++   ..+. +|+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            4678999999999999999998777778999999 889998885         14799999999776   2333 99998


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       182 ~  182 (336)
T PLN02823        182 G  182 (336)
T ss_pred             e
Confidence            6

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.80  E-value=5.9e-05  Score=62.53  Aligned_cols=68  Identities=18%  Similarity=0.320  Sum_probs=58.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAV  206 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~  206 (209)
                      .+.+++||-||||.|..++++++..|.-+++++|+ |.|++.+++         ..+|++.+.+|-++   .-+. +|+|
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI  153 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI  153 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence            45568999999999999999999999999999999 899998886         25899999999776   4454 9999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       154 i~  155 (282)
T COG0421         154 IV  155 (282)
T ss_pred             EE
Confidence            85

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.78  E-value=7.1e-05  Score=63.16  Aligned_cols=66  Identities=17%  Similarity=0.147  Sum_probs=50.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEE----ccCCCCC--C--CCcEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVG----GDMFKAI--S--PADAV  206 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~----gD~~~~~--p--~~D~~  206 (209)
                      ...++||||||+|.+...++.+.|+.++++.|+ |.+++.|+.       +.+||++..    .++++..  +  .+|++
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            357999999999999999999999999999999 777877764       346888754    3455532  2  28888


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      +-
T Consensus       194 vc  195 (321)
T PRK11727        194 LC  195 (321)
T ss_pred             Ee
Confidence            63

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.78  E-value=2.6e-05  Score=63.17  Aligned_cols=62  Identities=26%  Similarity=0.262  Sum_probs=49.2

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CC----CCeEEEEccCCCCCCCCcEEEe
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DL----VNLKYVGGDMFKAISPADAVVL  208 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~----~ri~~~~gD~~~~~p~~D~~~l  208 (209)
                      .+|||||||.|.++.-|++..  ..+++.|. +.+++.|++       +.    -|+++...|...-.+.||+++-
T Consensus        91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvc  164 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVC  164 (282)
T ss_pred             ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeee
Confidence            679999999999999999996  56788998 788888874       12    2688888888655555998863

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.71  E-value=0.00013  Score=54.60  Aligned_cols=39  Identities=31%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhh
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG  181 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~  181 (209)
                      .....+|||||||+|.++..+++..+  +++++|. +.+++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK   59 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh
Confidence            35678999999999999999977755  8999999 566654

...

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.71  E-value=7.8e-05  Score=64.39  Aligned_cols=64  Identities=19%  Similarity=0.204  Sum_probs=49.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---C-CCCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I-SPADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~-p~~D~~~l  208 (209)
                      ...+|+|+|||+|.++..++.+  ..+++++|. +.+++.|++     ..++++|+.+|+.+.   . ..+|++++
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~  306 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV  306 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence            3479999999999999999964  467999998 777777664     134899999998652   2 23898876

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=97.69  E-value=2.6e-05  Score=47.64  Aligned_cols=29  Identities=52%  Similarity=1.076  Sum_probs=25.9

Q ss_pred             HHHHHHHHcCchhHhhhCC-CCCCHHHHHH
Q 046346           30 MTLKCSIQLGIPDIINKHG-KPMTLNELQK   58 (209)
Q Consensus        30 ~~l~~a~~lglfd~L~~~g-~~~t~~eLA~   58 (209)
                      .+|++|++|||||.|...| +|+|++||+.
T Consensus         1 MaLk~aveLgI~dii~~~g~~~ls~~eia~   30 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAGGGPLSLSEIAA   30 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTS-BEHHHHHH
T ss_pred             CcHHHHHHcCcHHHHHHcCCCCCCHHHHHH
Confidence            4799999999999999986 8999999998

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.68  E-value=0.00025  Score=56.94  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=47.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCC---CCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---ISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~---~p~-~D~~~l  208 (209)
                      +..+|||||||+|.++..+++.  ..++++.|. +..++.+++    ...+++++.+|+.+-   .+. +|++++
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~  120 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTC  120 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEE
Confidence            5679999999999999999886  457899998 566666653    234678888887541   223 899875

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.67  E-value=7.6e-05  Score=65.63  Aligned_cols=66  Identities=21%  Similarity=0.387  Sum_probs=51.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---C---CC-CcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I---SP-ADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~---p~-~D~~~  207 (209)
                      ..+..+|+|+|||+|.++..+++...  +++.+|. +.+++.|++     ...+++|+.+|+.+.   +   .. +|+++
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi  367 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL  367 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence            44567999999999999999998753  6899999 788887774     236899999998641   2   12 79988


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       368 ~  368 (431)
T TIGR00479       368 L  368 (431)
T ss_pred             E
Confidence            6

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.65  E-value=0.00028  Score=59.92  Aligned_cols=66  Identities=20%  Similarity=0.168  Sum_probs=50.7

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-P-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p-~-~D~~~l  208 (209)
                      +.+..+|+|+|||+|.++.+.+..  ..+++++|+ +.++..++.     ....+++..+|+.+ +++ . +|+++.
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~  254 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT  254 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence            456779999999999999887664  678899999 677776663     12348899999987 554 2 899875

This family is found exclusively in the Archaea.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.65  E-value=6.6e-05  Score=59.48  Aligned_cols=68  Identities=19%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC-------C--CCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA-------I--SPA  203 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~-------~--p~~  203 (209)
                      ..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++      ..+||+++.||..+-       -  ..+
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF  122 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence            45789999999999999999999987 579999999 677777764      467999999998751       1  238


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |++++
T Consensus       123 D~VFi  127 (205)
T PF01596_consen  123 DFVFI  127 (205)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99986

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.63  E-value=5.9e-05  Score=60.49  Aligned_cols=63  Identities=22%  Similarity=0.195  Sum_probs=45.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC---CCCCCcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK---AISPADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~---~~p~~D~~~  207 (209)
                      ...+|||||||-|.++..+++..  .++++.|+ +..|+.|+.    ..-.|++.+....+   ....||+|+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~  129 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVT  129 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEE
Confidence            46899999999999999999997  88999999 678888773    12224455544433   223488875

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.63  E-value=0.00012  Score=61.56  Aligned_cols=64  Identities=19%  Similarity=0.188  Sum_probs=53.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCC-C-CcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-P-ADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p-~-~D~~~  207 (209)
                      ..++|+|||||+|.++.-.+++. ..++..+|-.++++.|++      ..+.|+++.|...+ ++| . .|+++
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIv  132 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIV  132 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEe
Confidence            46999999999999999999998 567899999888877765      46789999998877 677 3 78875

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.61  E-value=6.6e-05  Score=57.19  Aligned_cols=63  Identities=22%  Similarity=0.438  Sum_probs=46.4

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---CC--C-CcEEEeC
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---IS--P-ADAVVLK  209 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~p--~-~D~~~l~  209 (209)
                      ..|+|+-||.|..++++++.++.  ++.+|+ |..++.|+.      ..+||+|+.+|+++-   +.  . +|+++++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            47999999999999999999766  777888 667777764      367999999999972   22  2 6999985

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PTZ00146 fibrillarin; Provisional

Probab=97.60  E-value=0.0003  Score=58.48  Aligned_cols=67  Identities=10%  Similarity=0.099  Sum_probs=51.1

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeech-H----HHhhcccCCCCeEEEEccCCCCC------CCCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLP-H----VVNGLESDLVNLKYVGGDMFKAI------SPADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dlp-~----v~~~a~~~~~ri~~~~gD~~~~~------p~~D~~~l  208 (209)
                      +.+..+|||+|||+|.++..+++... .=+++.+|+. .    +++.++ ...+|.++.+|+..+.      +.+|++++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence            45668999999999999999999874 4588999984 3    455554 3468999999986542      23899875

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.58  E-value=8e-05  Score=59.00  Aligned_cols=73  Identities=15%  Similarity=0.254  Sum_probs=51.2

Q ss_pred             HHHHHhccccccC--CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC---C-C
Q 046346          131 SVMIQKCKNVFEG--LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS---P-A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~--~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p---~-~  203 (209)
                      ...++.+.  +++  ...|||||||+|.-+..|....  ...+++|+ |+|++.|.+..-.=.++-+|+=+.+|   + +
T Consensus        38 eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtF  113 (270)
T KOG1541|consen   38 ERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTF  113 (270)
T ss_pred             HHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCcc
Confidence            44455555  555  7899999999999988887654  67899999 89999887411012356777777443   3 7


Q ss_pred             cEEE
Q 046346          204 DAVV  207 (209)
Q Consensus       204 D~~~  207 (209)
                      |-++
T Consensus       114 Dg~I  117 (270)
T KOG1541|consen  114 DGVI  117 (270)
T ss_pred             ceEE
Confidence            7664

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.53  E-value=0.00027  Score=62.47  Aligned_cols=67  Identities=18%  Similarity=0.302  Sum_probs=52.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-~-~D~~~l  208 (209)
                      ....+|||+|||+|..+..+++..+ ..+++.+|+ +..++.+++     ...+|+++.+|..+..+ . +|+|++
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~  324 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL  324 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence            3457999999999999999988764 458999999 677776654     12479999999876333 3 899985

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.53  E-value=0.00021  Score=57.21  Aligned_cols=65  Identities=17%  Similarity=0.201  Sum_probs=49.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEEccCCC-C--
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFK-A--  199 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------~~~ri~~~~gD~~~-~--  199 (209)
                      .....+|++.|||.|+-+..|+++  +.+++++|+ +..++.+.+                 ..++|++..+|||+ +  
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            345679999999999999999998  568999999 566766521                 14689999999998 2  


Q ss_pred             CC-CCcEEE
Q 046346          200 IS-PADAVV  207 (209)
Q Consensus       200 ~p-~~D~~~  207 (209)
                      .. .+|+|+
T Consensus       113 ~~g~fD~iy  121 (218)
T PF05724_consen  113 DVGKFDLIY  121 (218)
T ss_dssp             CHHSEEEEE
T ss_pred             hcCCceEEE
Confidence            22 278875

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.53  E-value=0.00028  Score=56.20  Aligned_cols=64  Identities=20%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCC-CeEEEEccCCC-C--CCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLV-NLKYVGGDMFK-A--ISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~-ri~~~~gD~~~-~--~p~-~D~~~l  208 (209)
                      ...+|||+|||+|.++..+++..+  ++++.|+ +.+++.+++    ... ++++...|+.+ +  .+. +|++++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~  118 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTC  118 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEe
Confidence            467999999999999999988765  4889998 567766654    122 68888888765 2  234 899875

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.50  E-value=0.00024  Score=62.41  Aligned_cols=76  Identities=13%  Similarity=0.162  Sum_probs=54.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--CCCeEEEEccCCCCC---
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--LVNLKYVGGDMFKAI---  200 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~--~~ri~~~~gD~~~~~---  200 (209)
                      ..++..++  ..+..+|+|+|||+|..+..+++..|+.+++.+|. +..++.+++    .  ..++.++.+|.....   
T Consensus       228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~  305 (426)
T TIGR00563       228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA  305 (426)
T ss_pred             HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence            33344454  44568999999999999999999998889999999 677776653    1  224555778876521   


Q ss_pred             C-C-CcEEEe
Q 046346          201 S-P-ADAVVL  208 (209)
Q Consensus       201 p-~-~D~~~l  208 (209)
                      + . +|.|++
T Consensus       306 ~~~~fD~Vll  315 (426)
T TIGR00563       306 ENEQFDRILL  315 (426)
T ss_pred             cccccCEEEE
Confidence            2 2 899875

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.47  E-value=0.00017  Score=56.47  Aligned_cols=65  Identities=15%  Similarity=0.104  Sum_probs=49.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C--C-C-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I--S-P-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~--p-~-~D~~~l  208 (209)
                      ...++||++||+|.++.+++.+... +++.+|. +.+++.+++      ..++++++.+|.++.   +  . . +|++++
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            3578999999999999999999764 7899998 566665553      245899999998652   1  1 2 687765

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.47  E-value=0.00039  Score=55.08  Aligned_cols=76  Identities=18%  Similarity=0.272  Sum_probs=48.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEEEEcc
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKYVGGD  195 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------------~~~ri~~~~gD  195 (209)
                      ..+++.+.  ..+...++|||+|.|......+-.++--+++++++ |...+.|+.              ...++++..+|
T Consensus        32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            33455555  56678999999999999999998888777999998 444443331              24688999999


Q ss_pred             CCCC------CCCCcEEEe
Q 046346          196 MFKA------ISPADAVVL  208 (209)
Q Consensus       196 ~~~~------~p~~D~~~l  208 (209)
                      |.++      +..+|++++
T Consensus       110 fl~~~~~~~~~s~AdvVf~  128 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFV  128 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE
T ss_pred             ccccHhHhhhhcCCCEEEE
Confidence            9982      245899876

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.46  E-value=0.00036  Score=58.64  Aligned_cols=63  Identities=14%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEE
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVV  207 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~  207 (209)
                      .+.|||||||+|.++.-.+++.. -++..++-.++.+.|++      +.+||+.++|-..+ ++|. +|+++
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviI  248 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVII  248 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEE
Confidence            58999999999999987777642 25677787888888775      57999999999988 8998 99986

>PRK00536 speE spermidine synthase; Provisional

Probab=97.45  E-value=0.0004  Score=56.99  Aligned_cols=64  Identities=13%  Similarity=0.110  Sum_probs=51.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCCCCC--CCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFKAIS--PADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~~~p--~~D~~~l  208 (209)
                      .+.+++||-||||.|..+++++|. |. +++.+|+ +.|++.+++         ..+|++.+.  ++.+..  .+|+|++
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~~~~~~fDVIIv  145 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLDLDIKKYDLIIC  145 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhhccCCcCCEEEE
Confidence            467899999999999999999987 55 9999999 788988886         367999886  343322  3999975

>PLN02476 O-methyltransferase

Probab=97.45  E-value=0.00041  Score=57.38  Aligned_cols=68  Identities=16%  Similarity=0.133  Sum_probs=55.1

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C------CCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SPA  203 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~------p~~  203 (209)
                      ..++++|||||+++|..++.+++..| +-+++.+|. |+..+.|++      ..++|+++.||..+-   +      +.+
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            45689999999999999999999876 557899998 667777764      467999999998762   2      238


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |++++
T Consensus       196 D~VFI  200 (278)
T PLN02476        196 DFAFV  200 (278)
T ss_pred             CEEEE
Confidence            99986

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.44  E-value=0.00027  Score=65.92  Aligned_cols=65  Identities=15%  Similarity=0.078  Sum_probs=52.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEEccCCCC---CCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA---ISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~-~ri~~~~gD~~~~---~p~-~D~~~l  208 (209)
                      ...+|||+|||+|.++..+++. ...+++.+|+ +.+++.|++      .. ++++++.+|.++.   .+. +|+|++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil  614 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFI  614 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence            4589999999999999999986 3346999999 677887774      22 5899999998762   333 999986

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.42  E-value=0.00021  Score=57.46  Aligned_cols=54  Identities=17%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      +..++.+...|-....+|||||.+|.++..+++.+-..+++++|+ |..|..|++
T Consensus        46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark  100 (288)
T KOG2899|consen   46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARK  100 (288)
T ss_pred             ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHH
Confidence            444666654466789999999999999999999999999999999 566777774

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.40  E-value=0.0011  Score=53.30  Aligned_cols=49  Identities=14%  Similarity=0.121  Sum_probs=35.3

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHh
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPH-VVN  180 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~-v~~  180 (209)
                      ...+++.+. ......+++|||||+|.++..++++ +.-+++.+|... ++.
T Consensus        63 L~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~  112 (228)
T TIGR00478        63 LKEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLA  112 (228)
T ss_pred             HHHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHH
Confidence            344455554 1124579999999999999999987 456799999943 554

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.39  E-value=0.00046  Score=60.74  Aligned_cols=68  Identities=16%  Similarity=0.210  Sum_probs=52.7

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C--CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~--~p~-~D~~~l  208 (209)
                      ..+..+|||+|||+|..+..+++.. ++.+++.+|+ +..++.+++     ...+++++.+|..+ +  .+. +|.|++
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            4456799999999999999999986 5678999999 677776654     12468999999865 2  233 899885

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.39  E-value=0.00028  Score=60.53  Aligned_cols=52  Identities=17%  Similarity=0.269  Sum_probs=43.3

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK  198 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~  198 (209)
                      .++||++||+|.++..+++...  +++++|. +++++.|++     ..++++|+.+|+.+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4699999999999999999874  7999998 788877764     23479999999865

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.38  E-value=0.00028  Score=57.50  Aligned_cols=67  Identities=24%  Similarity=0.354  Sum_probs=53.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---C-CC-CCcEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---A-IS-PADAV  206 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~-~p-~~D~~  206 (209)
                      +.+++||-||||.|..+.++++..|..+++++|+ |.|++.+++         ..+|++.+.+|.+.   . .. .+|+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            4689999999999999999997776778999999 888888875         25799999999764   3 33 48988


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       155 i~  156 (246)
T PF01564_consen  155 IV  156 (246)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.38  E-value=0.0013  Score=53.34  Aligned_cols=87  Identities=15%  Similarity=0.221  Sum_probs=66.7

Q ss_pred             HHHHhhhHhh----HHHHHHhccccccCCCeEEEecCCccHHHHHHHH-HCCCCeEEEeec-hHHHhhccc------CCC
Q 046346          120 EAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAK-AFPKLECTCFDL-PHVVNGLES------DLV  187 (209)
Q Consensus       120 ~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~P~l~~~~~Dl-p~v~~~a~~------~~~  187 (209)
                      ..|...++..    +..++....  ..+..+|+|.|-|||.++..|++ -.|.-+++.+|. ++-.+.|++      +.+
T Consensus        69 ~~~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d  146 (256)
T COG2519          69 LSMKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD  146 (256)
T ss_pred             HhCcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc
Confidence            3365544422    345566666  77889999999999999999997 578889999998 677777764      467


Q ss_pred             CeEEEEccCCCC-CCC-CcEEEe
Q 046346          188 NLKYVGGDMFKA-ISP-ADAVVL  208 (209)
Q Consensus       188 ri~~~~gD~~~~-~p~-~D~~~l  208 (209)
                      +|++..+|+.+. .+. +|+++|
T Consensus       147 ~v~~~~~Dv~~~~~~~~vDav~L  169 (256)
T COG2519         147 RVTLKLGDVREGIDEEDVDAVFL  169 (256)
T ss_pred             ceEEEeccccccccccccCEEEE
Confidence            899999999884 444 899886

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.38  E-value=0.00067  Score=54.57  Aligned_cols=55  Identities=24%  Similarity=0.370  Sum_probs=42.3

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhhc---ccCCC-CeEEEEccCCC
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGL---ESDLV-NLKYVGGDMFK  198 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a---~~~~~-ri~~~~gD~~~  198 (209)
                      ...+||||||.|.+...+|+++|+..++++++  +.+....   .+..- ++.++.+|..+
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~  109 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE  109 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence            36899999999999999999999999999998  3333322   22333 78888887543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.38  E-value=0.00035  Score=60.77  Aligned_cols=65  Identities=15%  Similarity=0.133  Sum_probs=50.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEEccCCCCC------C-CCcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKAI------S-PADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~-~ri~~~~gD~~~~~------p-~~D~~~  207 (209)
                      ...+|||+|||+|.++...+.. +..+++.+|+ +.+++.|++      .. ++++++.+|+++-+      . .+|+|+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            4689999999999998876653 4558999999 677777664      22 48999999998721      2 389998


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       299 l  299 (396)
T PRK15128        299 M  299 (396)
T ss_pred             E
Confidence            6

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.36  E-value=0.0014  Score=52.76  Aligned_cols=64  Identities=11%  Similarity=0.010  Sum_probs=49.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEEccCCC-CC-C
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFK-AI-S  201 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------~~~ri~~~~gD~~~-~~-p  201 (209)
                      ....+|++.|||.|.-+.-|+++  +.+++++|+ +..++.+.+                 ...+|++..+|||+ +. +
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            34579999999999999999998  566999999 555665321                 24589999999998 22 1


Q ss_pred             ----CCcEEE
Q 046346          202 ----PADAVV  207 (209)
Q Consensus       202 ----~~D~~~  207 (209)
                          .+|+|+
T Consensus       120 ~~~~~fD~Vy  129 (226)
T PRK13256        120 NNLPVFDIWY  129 (226)
T ss_pred             cccCCcCeee
Confidence                378875

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.35  E-value=0.00058  Score=60.15  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=52.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C----C-CC-CcEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A----I-SP-ADAV  206 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~----~-p~-~D~~  206 (209)
                      .....+|||+|||+|..+..+++..+ ..+++.+|+ ++.++.+++     ...+|+++.+|..+ +    . +. +|.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            34568999999999999999999864 468999998 677776654     13469999999865 2    1 23 8999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       330 l~  331 (434)
T PRK14901        330 LL  331 (434)
T ss_pred             EE
Confidence            86

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.29  E-value=0.0015  Score=57.75  Aligned_cols=65  Identities=22%  Similarity=0.267  Sum_probs=45.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHC----CCCeEEEeec-hHHHhhc----c--cCCCCeEEEEccCCC-CCCC-CcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAF----PKLECTCFDL-PHVVNGL----E--SDLVNLKYVGGDMFK-AISP-ADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~----P~l~~~~~Dl-p~v~~~a----~--~~~~ri~~~~gD~~~-~~p~-~D~~~  207 (209)
                      ....|+|||+|+|.++...+++.    -..++..++- |.++...    +  ...++|+++.+|+.+ ..|. +|+++
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV  263 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV  263 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence            35789999999999988776664    4567888887 3322221    1  146899999999988 7786 99986

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.29  E-value=0.00037  Score=59.99  Aligned_cols=52  Identities=15%  Similarity=0.234  Sum_probs=42.9

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK  198 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~  198 (209)
                      .++||++||+|.++..+++...  +++++|. +.+++.+++     ..++++|+.+|.++
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            5799999999999999998865  7899998 677777664     23589999999865

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.21  E-value=0.001  Score=54.75  Aligned_cols=67  Identities=13%  Similarity=0.161  Sum_probs=51.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C--CCCCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--ISPADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~--~p~~D~~~l  208 (209)
                      ....+|||+|||+|..+..+++..++ -+++.+|+ +..++.+++     ...+|+++.+|... +  .+.+|.|++
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            45679999999999999999998754 58899999 677766553     23568899999654 2  234899875

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.19  E-value=0.0018  Score=53.56  Aligned_cols=68  Identities=15%  Similarity=0.148  Sum_probs=53.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC------CCCCcEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA------ISPADAV  206 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~--l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~------~p~~D~~  206 (209)
                      ..+-+||||.||+|.+....++.+|.  .++.+.|. |.-++..++      +.+-++|..+|.|+.      .|..+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            35789999999999999999999998  78899998 555665553      455669999999982      2446877


Q ss_pred             EeC
Q 046346          207 VLK  209 (209)
Q Consensus       207 ~l~  209 (209)
                      +++
T Consensus       214 iVs  216 (311)
T PF12147_consen  214 IVS  216 (311)
T ss_pred             EEe
Confidence            754

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.19  E-value=0.0014  Score=53.81  Aligned_cols=66  Identities=15%  Similarity=0.382  Sum_probs=52.0

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC
Q 046346          129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK  198 (209)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~  198 (209)
                      .+..+++.++  ......|+|||.|.|.++..|+++.  -+.++++. +..++..++   ..++++++.+|+++
T Consensus        18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~   87 (262)
T PF00398_consen   18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK   87 (262)
T ss_dssp             HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence            4566677666  5678999999999999999999998  66888887 555554443   36899999999997

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.15  E-value=0.0012  Score=48.61  Aligned_cols=52  Identities=21%  Similarity=0.300  Sum_probs=40.3

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCC
Q 046346          146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMF  197 (209)
Q Consensus       146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~  197 (209)
                      +++|||||.|.++..+++.+|..+++.+|- |...+.+++     ...+++++.....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence            589999999999999999999999999998 666665443     1234666665554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.13  E-value=0.0012  Score=50.94  Aligned_cols=68  Identities=19%  Similarity=0.136  Sum_probs=43.8

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc--------CCCCeEEEEccCCCCC------CC-CcE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFKAI------SP-ADA  205 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~--------~~~ri~~~~gD~~~~~------p~-~D~  205 (209)
                      .....+||++|||+|..++.+++..+..++++-|.+++++..+.        ...++++...|+-++.      +. +|+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            34578999999999999999999988889999999887775543        2478899999986622      22 788


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |+-
T Consensus       123 Ila  125 (173)
T PF10294_consen  123 ILA  125 (173)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.13  E-value=0.001  Score=49.47  Aligned_cols=58  Identities=24%  Similarity=0.385  Sum_probs=43.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhccc--------CCCCeEEEEccCCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK  198 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~----~P~l~~~~~Dl-p~v~~~a~~--------~~~ri~~~~gD~~~  198 (209)
                      ..+..+|||+|||.|+++..|+..    .|+++++.+|. +..++.+..        ...++++..+++.+
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            356799999999999999999992    28899999998 455555442        23567777776644

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.0032  Score=51.48  Aligned_cols=69  Identities=14%  Similarity=0.329  Sum_probs=50.9

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc---CCCCeEEEEccCCC-CCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES---DLVNLKYVGGDMFK-AIS  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~---~~~ri~~~~gD~~~-~~p  201 (209)
                      ...+++..+  ......|++||+|.|.++..|+++...+.++=.| +..++.-++   ..++++.+.+|+.+ ++|
T Consensus        19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcch
Confidence            456666665  4557899999999999999999998875554444 333333222   46899999999998 666

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.04  E-value=0.00098  Score=53.29  Aligned_cols=67  Identities=18%  Similarity=0.349  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhhhHhhHHHH----HHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          114 LNNFFNEAMASDARLATSVM----IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       114 ~~~~f~~~m~~~~~~~~~~~----~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      .+++|.......-....|..    +...+  ..+.++++|+|||||..+..|...-..+  +++|+ ..|++.|.+
T Consensus        94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~~l--tGvDiS~nMl~kA~e  165 (287)
T COG4976          94 YAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMADRL--TGVDISENMLAKAHE  165 (287)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHhhc--cCCchhHHHHHHHHh
Confidence            34556555543222222333    33333  3448999999999999999998876554  45899 578887764

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.02  E-value=0.00072  Score=50.28  Aligned_cols=63  Identities=27%  Similarity=0.364  Sum_probs=47.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhccc----CCCCeEEEEccCCCCCC--C-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--P-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p--~-~D~~~l  208 (209)
                      ...+.|+|||.|-++  ++-.+|..+ ++++|+ |+.++.+..    ..-++.++..|+.++-+  + +|..++
T Consensus        49 gkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtavi  120 (185)
T KOG3420|consen   49 GKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVI  120 (185)
T ss_pred             CcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEe
Confidence            588999999999998  555677664 799999 888887653    34567889999888533  2 666554

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.98  E-value=0.0018  Score=51.31  Aligned_cols=62  Identities=18%  Similarity=0.267  Sum_probs=47.3

Q ss_pred             EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC---CcEEEe
Q 046346          147 LVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP---ADAVVL  208 (209)
Q Consensus       147 vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~---~D~~~l  208 (209)
                      |+||||-+|.+.+.|+++..--+++..|+ +.-++.|++      +.++|++.-+|=++.++.   .|++++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence            68999999999999999999999999999 666666664      578999999998786653   677765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.94  E-value=0.0028  Score=51.63  Aligned_cols=68  Identities=15%  Similarity=0.150  Sum_probs=55.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C-------CC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I-------SP  202 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~-------p~  202 (209)
                      ..+++++|+||.+.|.-+..+++..| +.+++.+|. |+..+.|++      ..++|+++.||..+-   +       ..
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            44689999999999999999999875 678999998 666777764      468999999998762   1       24


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|++++
T Consensus       157 fD~iFi  162 (247)
T PLN02589        157 FDFIFV  162 (247)
T ss_pred             ccEEEe
Confidence            899986

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.92  E-value=0.0031  Score=50.35  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=56.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEE-ccCCC---C-CC-CCcEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVG-GDMFK---A-IS-PADAV  206 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~-gD~~~---~-~p-~~D~~  206 (209)
                      ..+++++|+||.+.|.-++.++...| +-+.|.+|+ |+.++.|++      ..++|+.+. ||..+   . .. .+|++
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            56899999999999999999999999 788999999 788888875      467898888 58765   2 23 39999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      |+
T Consensus       137 FI  138 (219)
T COG4122         137 FI  138 (219)
T ss_pred             EE
Confidence            86

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=96.88  E-value=0.0039  Score=48.31  Aligned_cols=67  Identities=19%  Similarity=0.209  Sum_probs=48.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCe---------EEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC-C
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLE---------CTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-P  202 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~---------~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p-~  202 (209)
                      +.+...|+|-=||+|+++++.+...++..         +++.|. +.+++.|+.      ....|.+...|+++ +++ .
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~  105 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG  105 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence            45678999999999999999888887777         899999 777777664      35679999999987 533 3


Q ss_pred             -CcEEE
Q 046346          203 -ADAVV  207 (209)
Q Consensus       203 -~D~~~  207 (209)
                       .|+++
T Consensus       106 ~~d~Iv  111 (179)
T PF01170_consen  106 SVDAIV  111 (179)
T ss_dssp             BSCEEE
T ss_pred             CCCEEE
Confidence             78876

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.79  E-value=0.0028  Score=56.99  Aligned_cols=54  Identities=19%  Similarity=0.231  Sum_probs=41.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhhccc----CCCCeEEEEccC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGLES----DLVNLKYVGGDM  196 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a~~----~~~ri~~~~gD~  196 (209)
                      ....+||||||.|.++..+++++|+..++++|.  +.+....+.    ...++.++.+|+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~  406 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL  406 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            468999999999999999999999999999998  344333322    234566666664

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.70  E-value=0.007  Score=51.41  Aligned_cols=63  Identities=21%  Similarity=0.180  Sum_probs=49.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCCC--C-CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAIS--P-ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~p--~-~D~~~  207 (209)
                      .+..++||||+++|.++..++++  +.+++.+|...+-.... ..+||+++.+|-|.-.|  . +|+++
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvV  275 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLV  275 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh-CCCCEEEEeccCcccCCCCCCCCEEE
Confidence            46789999999999999999999  55899999755544333 47899999999887443  2 67664

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=96.69  E-value=0.014  Score=47.58  Aligned_cols=90  Identities=16%  Similarity=0.253  Sum_probs=58.9

Q ss_pred             HHHHHHHhhhHhh----HHHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------
Q 046346          117 FFNEAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------  184 (209)
Q Consensus       117 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~------  184 (209)
                      .|...|...++..    +..++-.++  ..+..+||+.|-|+|.++..|++. .|.=++.-+|. ++-.+.|++      
T Consensus        12 ~~~~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g   89 (247)
T PF08704_consen   12 LWTLSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG   89 (247)
T ss_dssp             HHHHTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC
Confidence            3555555544322    344555666  778899999999999999999975 68889999998 666666664      


Q ss_pred             CCCCeEEEEccCCC-CC----CC-CcEEEe
Q 046346          185 DLVNLKYVGGDMFK-AI----SP-ADAVVL  208 (209)
Q Consensus       185 ~~~ri~~~~gD~~~-~~----p~-~D~~~l  208 (209)
                      +.++|++..+|..+ .+    .. +|+++|
T Consensus        90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL  119 (247)
T PF08704_consen   90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL  119 (247)
T ss_dssp             CCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred             CCCCceeEecceecccccccccCcccEEEE
Confidence            46789999999865 23    23 899987

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.68  E-value=0.011  Score=49.61  Aligned_cols=76  Identities=12%  Similarity=0.141  Sum_probs=59.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC------C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK------A  199 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~------~  199 (209)
                      ..+++.+.  ..+...+||.=+|.|..+..++++.|+.+++++|. |.+++.+++    ..+|++++.++|-+      .
T Consensus        10 ~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~   87 (305)
T TIGR00006        10 DEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE   87 (305)
T ss_pred             HHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence            44556554  34567999999999999999999998899999999 788887765    34699999999875      1


Q ss_pred             C--CCCcEEEe
Q 046346          200 I--SPADAVVL  208 (209)
Q Consensus       200 ~--p~~D~~~l  208 (209)
                      .  ..+|.+++
T Consensus        88 ~~~~~vDgIl~   98 (305)
T TIGR00006        88 LLVTKIDGILV   98 (305)
T ss_pred             cCCCcccEEEE
Confidence            1  23788775

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=96.65  E-value=0.0043  Score=53.81  Aligned_cols=65  Identities=22%  Similarity=0.140  Sum_probs=50.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---CCCCcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---ISPADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~p~~D~~~l  208 (209)
                      ..+|+|++||+|.+++.++++.+..+++..|. |..++.+++     ..+.+++..+|..+-   .+.+|++++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence            46899999999999999999988668999999 777777664     234567888887542   233898875

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.62  E-value=0.0062  Score=51.92  Aligned_cols=67  Identities=25%  Similarity=0.481  Sum_probs=53.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhccc------------CCCCeEEEEccCCCCC---C-C
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFKAI---S-P  202 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~------------~~~ri~~~~gD~~~~~---p-~  202 (209)
                      .++.++++-+|||.|..+++++ +||+. +.+.+|+ |.|++.++.            ..+|++.+.-|.|+=+   . .
T Consensus       287 ~~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~  365 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM  365 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence            3578999999999999999986 57866 6899999 999998773            3679999999988621   1 2


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|.++.
T Consensus       366 fD~vIV  371 (508)
T COG4262         366 FDVVIV  371 (508)
T ss_pred             ccEEEE
Confidence            676653

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.55  E-value=0.0072  Score=46.70  Aligned_cols=65  Identities=18%  Similarity=0.398  Sum_probs=50.1

Q ss_pred             CCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCC--CCcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p--~~D~~~l  208 (209)
                      ...+++||||+|.++..|++.. |+.....-|+ |++++...+    ...++..+..|+++.+-  ..|++++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvf  116 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVF  116 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEE
Confidence            7889999999999999988774 7888899999 777665432    34567788889988542  2787765

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=96.54  E-value=0.0043  Score=49.96  Aligned_cols=41  Identities=29%  Similarity=0.443  Sum_probs=34.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      .+.+.++|||||+|..++.++..|.+  +|..|. +.+++.|.+
T Consensus        32 ~~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k   73 (261)
T KOG3010|consen   32 EGHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKK   73 (261)
T ss_pred             CCcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhc
Confidence            45569999999999888888888777  777998 788998875

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.42  E-value=0.014  Score=46.04  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=51.1

Q ss_pred             hHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhhcccCCCCeEEEEccCCC
Q 046346          126 ARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLPHVVNGLESDLVNLKYVGGDMFK  198 (209)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~  198 (209)
                      +.....++.+.+ ..+.+..+|+|+|+.+|.++.-++++-. ..+++++|+-++-.     ...|.++.+||++
T Consensus        29 Aa~KL~el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----~~~V~~iq~d~~~   96 (205)
T COG0293          29 AAYKLLELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----IPGVIFLQGDITD   96 (205)
T ss_pred             HHHHHHHHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----CCCceEEeeeccC
Confidence            334455666666 3578889999999999999998888765 45789999866532     3459999999986

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.41  E-value=0.011  Score=47.92  Aligned_cols=66  Identities=21%  Similarity=0.227  Sum_probs=48.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      .+.+|+|||||-=-++.-.....|+.+.+..|+ ...++....    +..+.+....|.+...|.  +|+.+|
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl  177 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL  177 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence            489999999999999999999999999999999 444444332    567888888999997654  898864

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.40  E-value=0.014  Score=44.57  Aligned_cols=79  Identities=23%  Similarity=0.275  Sum_probs=56.2

Q ss_pred             HhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC------
Q 046346          127 RLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK------  198 (209)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~------  198 (209)
                      .+.++.++...+  +.+..-|+++|.|+|.+..+++++. +....+..+. ++-...-.+..+.++++.||.|.      
T Consensus        34 s~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~  111 (194)
T COG3963          34 SILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG  111 (194)
T ss_pred             HHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence            344566666677  7778899999999999999988874 5555666665 55554444456677789999886      


Q ss_pred             CCCC--CcEEE
Q 046346          199 AISP--ADAVV  207 (209)
Q Consensus       199 ~~p~--~D~~~  207 (209)
                      +.+.  +|.++
T Consensus       112 e~~gq~~D~vi  122 (194)
T COG3963         112 EHKGQFFDSVI  122 (194)
T ss_pred             hcCCCeeeeEE
Confidence            3443  78775

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.33  E-value=0.006  Score=50.88  Aligned_cols=42  Identities=12%  Similarity=0.139  Sum_probs=31.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL  175 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl  175 (209)
                      ..+...++. + ..++|+|||||+|.++-.++++.|. .++++|-
T Consensus       105 ~rl~p~l~~-L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP  146 (315)
T PF08003_consen  105 DRLLPHLPD-L-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDP  146 (315)
T ss_pred             HHHHhhhCC-c-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECC
Confidence            444455531 3 4689999999999999999999765 3778884

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.30  E-value=0.0099  Score=46.93  Aligned_cols=68  Identities=22%  Similarity=0.246  Sum_probs=49.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC-CC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-SP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~-p~-~D~~~l  208 (209)
                      ..+..+|+|+-||-|.+++.+++..+..+++..|+ |..++..++      ..++|+.+.+|..+-. .. +|-++|
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim  175 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIM  175 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEE
Confidence            34578999999999999999999888889999999 777765443      5788999999987633 23 787776

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.27  E-value=0.0065  Score=48.94  Aligned_cols=68  Identities=16%  Similarity=0.343  Sum_probs=49.8

Q ss_pred             HHHHHhcccccc----CCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhhccc----CCCCeEEEEccCCC
Q 046346          131 SVMIQKCKNVFE----GLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK  198 (209)
Q Consensus       131 ~~~~~~~~~~~~----~~~~vlDvGgG~G~~~~~l~~~~P~--l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~  198 (209)
                      .++.+.++..++    +..++++||||.|...-=|++.+|+  ++....|. |.+++..++    ...|+.....|+..
T Consensus        55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~  133 (264)
T KOG2361|consen   55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTS  133 (264)
T ss_pred             HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccc
Confidence            344455543322    3348999999999999999999999  88899998 777776554    24567767777765

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.21  E-value=0.022  Score=53.27  Aligned_cols=76  Identities=17%  Similarity=0.212  Sum_probs=54.3

Q ss_pred             HHHHHhccccc-cCCCeEEEecCCccHHHHHHHHHC----C--------------------------------------C
Q 046346          131 SVMIQKCKNVF-EGLNSLVDVGGGTGTAAKAIAKAF----P--------------------------------------K  167 (209)
Q Consensus       131 ~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~----P--------------------------------------~  167 (209)
                      ..++..-.  | .+...++|-.||+|+++++.+...    |                                      .
T Consensus       179 aa~l~~a~--w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~  256 (702)
T PRK11783        179 AAILLRSG--WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP  256 (702)
T ss_pred             HHHHHHcC--CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence            34444434  4 456899999999999999876631    1                                      2


Q ss_pred             CeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC----CCcEEEe
Q 046346          168 LECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS----PADAVVL  208 (209)
Q Consensus       168 l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p----~~D~~~l  208 (209)
                      .+++++|+ +.+++.|+.      ..++|++..+|+++ +.|    .+|+++.
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~Ivt  309 (702)
T PRK11783        257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVIS  309 (702)
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEE
Confidence            36899998 788887774      45689999999987 322    2788764

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.16  E-value=0.0074  Score=47.60  Aligned_cols=43  Identities=23%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             HHhccccccCCC-eEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046346          134 IQKCKNVFEGLN-SLVDVGGGTGTAAKAIAKAFPKLECTCFDLP  176 (209)
Q Consensus       134 ~~~~~~~~~~~~-~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp  176 (209)
                      ++.+...++... +||+||+|||..+..+++.+|+++..=-|..
T Consensus        15 l~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~   58 (204)
T PF06080_consen   15 LEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPD   58 (204)
T ss_pred             HHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCC
Confidence            333333344445 5999999999999999999999988766763

The function of this family is unknown.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.022  Score=45.07  Aligned_cols=75  Identities=23%  Similarity=0.282  Sum_probs=52.4

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHhhccc---------------CCCCeEEEEc
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLES---------------DLVNLKYVGG  194 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dl-p~v~~~a~~---------------~~~ri~~~~g  194 (209)
                      +++.++..+.+..++||||.|+|.++..++..-  |....+++|+ |++++.+.+               ...++.++.|
T Consensus        72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG  151 (237)
T KOG1661|consen   72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG  151 (237)
T ss_pred             HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence            344444345677899999999999999887543  3333377887 888876553               2468899999


Q ss_pred             cCCCCCC---CCcEEE
Q 046346          195 DMFKAIS---PADAVV  207 (209)
Q Consensus       195 D~~~~~p---~~D~~~  207 (209)
                      |=..-.+   ++|.|.
T Consensus       152 Dgr~g~~e~a~YDaIh  167 (237)
T KOG1661|consen  152 DGRKGYAEQAPYDAIH  167 (237)
T ss_pred             CccccCCccCCcceEE
Confidence            9776333   388875

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.08  E-value=0.018  Score=45.57  Aligned_cols=90  Identities=21%  Similarity=0.309  Sum_probs=48.3

Q ss_pred             cccCCCcHHHHHHHHHHHhhh-Hh---hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhh
Q 046346          106 EYDGDEPKLNNFFNEAMASDA-RL---ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG  181 (209)
Q Consensus       106 ~~~~~~~~~~~~f~~~m~~~~-~~---~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~  181 (209)
                      +.+.++|+....|+.+-+... .|   ....+++.+.. .+....|.|.|||.+.++..+.   ...++.-+|+-..   
T Consensus        32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~---  104 (219)
T PF05148_consen   32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP---  104 (219)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S---
T ss_pred             HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC---
Confidence            445677877777776655422 12   24555555541 3456799999999999996653   2346777887332   


Q ss_pred             cccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          182 LESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       182 a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                          .++  .++.|+-+ |++.  .|++++
T Consensus       105 ----n~~--Vtacdia~vPL~~~svDv~Vf  128 (219)
T PF05148_consen  105 ----NPR--VTACDIANVPLEDESVDVAVF  128 (219)
T ss_dssp             ----STT--EEES-TTS-S--TT-EEEEEE
T ss_pred             ----CCC--EEEecCccCcCCCCceeEEEE
Confidence                234  46788865 7665  788764

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.97  E-value=0.029  Score=47.14  Aligned_cols=67  Identities=16%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK  198 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~  198 (209)
                      ...+++.+.  ..+...+||.=-|.|.++.++++++|+.+.+++|+ |.+++.|++    ..+|+.++.++|-+
T Consensus         9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen    9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            345566665  45678999999999999999999999999999999 888877765    36899999999875

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=95.96  E-value=0.03  Score=43.65  Aligned_cols=64  Identities=22%  Similarity=0.353  Sum_probs=46.5

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec----hHHHhhcc-c-CCCCeEEEEccCCC-CCCC-CcEEEeC
Q 046346          146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL----PHVVNGLE-S-DLVNLKYVGGDMFK-AISP-ADAVVLK  209 (209)
Q Consensus       146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl----p~v~~~a~-~-~~~ri~~~~gD~~~-~~p~-~D~~~l~  209 (209)
                      +++|||.|.|.=++-++=.+|+++++++|-    -..++.+. + .-++++.+.+...+ ..+. +|+++.|
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aR  122 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTAR  122 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEee
Confidence            899999999999999999999999999996    12233322 2 24579999998866 3443 8988753

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.94  E-value=0.012  Score=41.50  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=26.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL  175 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl  175 (209)
                      ....+||||||+|.+..-|.+.  +.++.++|.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            5678999999999999998887  556788884

; GO: 0008168 methyltransferase activity

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.91  E-value=0.026  Score=44.94  Aligned_cols=66  Identities=14%  Similarity=0.153  Sum_probs=52.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC-C--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-P--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p-~--~D~~~l  208 (209)
                      ...++.||||-++.+.+.+.+.+|..+++..|. +.-++.|.+      +.+||+.-.+|=+.++- .  .|++++
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI   91 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI   91 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEE
Confidence            445599999999999999999999999999998 544544432      67899999999887542 2  677654

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.84  E-value=0.029  Score=46.42  Aligned_cols=42  Identities=36%  Similarity=0.581  Sum_probs=35.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhccc
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES  184 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~  184 (209)
                      .+.+|||+|+|+|..+-++...+|.+ +++++|. +.+++.++.
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~   76 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR   76 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH
Confidence            46799999999999999999999966 4789998 677776654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.40  E-value=0.025  Score=43.58  Aligned_cols=48  Identities=19%  Similarity=0.212  Sum_probs=36.5

Q ss_pred             HHHHHHhcccccc--CCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHH
Q 046346          130 TSVMIQKCKNVFE--GLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHV  178 (209)
Q Consensus       130 ~~~~~~~~~~~~~--~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v  178 (209)
                      ..++.+.++. +.  ...++||+||++|.++..++++. +..+++.+|+...
T Consensus         9 L~ei~~~~~~-~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    9 LYEIDEKFKI-FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             HHHHHHTTSS-S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHCCC-CCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            3455565651 22  45999999999999999999998 7889999999544

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=95.28  E-value=0.085  Score=42.09  Aligned_cols=65  Identities=25%  Similarity=0.353  Sum_probs=49.1

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec----hHHHhhccc-C-CCCeEEEEccCCC--CCCC-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL----PHVVNGLES-D-LVNLKYVGGDMFK--AISP-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl----p~v~~~a~~-~-~~ri~~~~gD~~~--~~p~-~D~~~l  208 (209)
                      ..+++|||-|.|.=++=++=.+|+++++++|-    -.-++.+.. + -++++++.+..-+  ..+. +|+++-
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEe
Confidence            68999999999999999999999999999995    233333332 2 4668888887755  2344 888764

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.22  E-value=0.08  Score=41.25  Aligned_cols=38  Identities=18%  Similarity=0.348  Sum_probs=32.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHH
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHV  178 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v  178 (209)
                      +.+..+|+|+|+.+|.++.-..++. |+-.+.++|+-+.
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~  105 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI  105 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec
Confidence            5678999999999999999777765 9999999998444

>KOG2730 consensus Methylase [General function prediction only]

Probab=95.13  E-value=0.014  Score=46.48  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=45.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK  198 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~  198 (209)
                      ....|+|.=||-|...+..+.++|.  ++..|+ |.-|..|+.      ..+||+|+.|||++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence            6789999999999999999999998  556777 666777774      35799999999987

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=95.12  E-value=0.11  Score=42.65  Aligned_cols=87  Identities=21%  Similarity=0.315  Sum_probs=54.0

Q ss_pred             ccCCCcHHHHHHHHHHHhhhH-h---hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhc
Q 046346          107 YDGDEPKLNNFFNEAMASDAR-L---ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGL  182 (209)
Q Consensus       107 ~~~~~~~~~~~f~~~m~~~~~-~---~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a  182 (209)
                      .+.++|.....|+++....-. |   ....+++.+. .-+....|.|+|||.+.++..   +  ..++.-+||-.+    
T Consensus       141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~~---~--~~kV~SfDL~a~----  210 (325)
T KOG3045|consen  141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIASS---E--RHKVHSFDLVAV----  210 (325)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhhc---c--ccceeeeeeecC----
Confidence            456778777777776654222 2   2455556554 235678999999999998871   1  224566776433    


Q ss_pred             ccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          183 ESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       183 ~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                         .+||  +++|+.+ |++.  .|+.+.
T Consensus       211 ---~~~V--~~cDm~~vPl~d~svDvaV~  234 (325)
T KOG3045|consen  211 ---NERV--IACDMRNVPLEDESVDVAVF  234 (325)
T ss_pred             ---CCce--eeccccCCcCccCcccEEEe
Confidence               3444  6778776 5554  677654

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.85  E-value=0.13  Score=42.99  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhccc----CCCCeEEEEccCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLES----DLVNLKYVGGDMFK  198 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~  198 (209)
                      ..+++.+.  .......||.==|.|.++.++++++|... .+++|. |.+++.|++    ..+|++++.++|-+
T Consensus        13 ~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275          13 NEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             HHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            44556665  44568999999999999999999999886 999999 899999886    36799999998865

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.78  E-value=0.15  Score=40.07  Aligned_cols=67  Identities=10%  Similarity=0.144  Sum_probs=42.0

Q ss_pred             CCCeEEEecCCccH----HHHHHHHHC---C--CCeEEEeec-hHHHhhccc----------------------------
Q 046346          143 GLNSLVDVGGGTGT----AAKAIAKAF---P--KLECTCFDL-PHVVNGLES----------------------------  184 (209)
Q Consensus       143 ~~~~vlDvGgG~G~----~~~~l~~~~---P--~l~~~~~Dl-p~v~~~a~~----------------------------  184 (209)
                      +.-+|+-.||++|.    +++.+.+..   .  ..++++-|+ +.+++.|++                            
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            56899999999996    333344421   2  357788998 678887762                            


Q ss_pred             -----CCCCeEEEEccCCCC-CC-C-CcEEEeC
Q 046346          185 -----DLVNLKYVGGDMFKA-IS-P-ADAVVLK  209 (209)
Q Consensus       185 -----~~~ri~~~~gD~~~~-~p-~-~D~~~l~  209 (209)
                           ...+|+|..+|..++ .+ . +|+|+.|
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CR  143 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCR  143 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEec
Confidence                 146899999999993 22 3 8999864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=94.74  E-value=0.036  Score=43.10  Aligned_cols=65  Identities=15%  Similarity=0.201  Sum_probs=47.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C---CC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I---SP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~---p~-~D~~~l  208 (209)
                      ...++||+=+|||.++.+.+.|.-. +++.+|. +..+...++      ..++++.+.+|++..   .   .. +|+|++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            4689999999999999999988633 6888998 566655553      345799999997652   1   23 899986

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.51  E-value=0.47  Score=39.20  Aligned_cols=67  Identities=12%  Similarity=0.109  Sum_probs=51.7

Q ss_pred             CCCeEEEecCCccH----HHHHHHHHCCC-----CeEEEeec-hHHHhhccc----------------------------
Q 046346          143 GLNSLVDVGGGTGT----AAKAIAKAFPK-----LECTCFDL-PHVVNGLES----------------------------  184 (209)
Q Consensus       143 ~~~~vlDvGgG~G~----~~~~l~~~~P~-----l~~~~~Dl-p~v~~~a~~----------------------------  184 (209)
                      +.-+|.-.||+||.    +++.+.+.+|.     .+++.-|+ ..+++.|+.                            
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            47899999999995    66778888874     67788998 577776652                            


Q ss_pred             ------CCCCeEEEEccCCCCC--CC-CcEEEeC
Q 046346          185 ------DLVNLKYVGGDMFKAI--SP-ADAVVLK  209 (209)
Q Consensus       185 ------~~~ri~~~~gD~~~~~--p~-~D~~~l~  209 (209)
                            ....|.|..+|.+++.  +. +|+|+.|
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR  209 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR  209 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEc
Confidence                  1357899999999844  44 9999864

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=94.46  E-value=0.037  Score=43.61  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL  175 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl  175 (209)
                      -..++|||||-|.+++.|.-.||+.-.+++++
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEI   92 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEI   92 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehh
Confidence            36799999999999999999999999999987

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.39  E-value=0.13  Score=45.43  Aligned_cols=66  Identities=24%  Similarity=0.390  Sum_probs=50.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---CCC---CCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS---PADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~~p---~~D~~~l  208 (209)
                      ..+..+|+|+=||.|.++..|+++  --+++++++ |+.++.|++     ..++++|+.+|..+   .+.   .+|.+++
T Consensus       291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence            346689999999999999999955  445777888 777777764     34569999999776   332   3788875

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=94.20  E-value=0.12  Score=44.72  Aligned_cols=64  Identities=16%  Similarity=0.221  Sum_probs=49.1

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---C-CCCcEEEe
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I-SPADAVVL  208 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~-p~~D~~~l  208 (209)
                      .+|||.-+|+|..++..+++.++. +++..|+ |..++.+++     ...++++..+|...-   . ..+|+|.+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            589999999999999999997665 6899999 777776654     123578888888752   1 23888875

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=94.02  E-value=0.1  Score=47.12  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=45.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCC--------CeEEEeec-hHHHhhccc----C-CCCeEEEEccCCCC-------C-
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPK--------LECTCFDL-PHVVNGLES----D-LVNLKYVGGDMFKA-------I-  200 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~--------l~~~~~Dl-p~v~~~a~~----~-~~ri~~~~gD~~~~-------~-  200 (209)
                      ...+|+|.+||+|.++.+++++.+.        ....++|+ +.++..++.    . ...++...+|+...       . 
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            4569999999999999999988863        45688898 566665543    1 12355566665531       1 


Q ss_pred             CCCcEEEe
Q 046346          201 SPADAVVL  208 (209)
Q Consensus       201 p~~D~~~l  208 (209)
                      +.+|+|+-
T Consensus       111 ~~fD~IIg  118 (524)
T TIGR02987       111 DLFDIVIT  118 (524)
T ss_pred             CcccEEEe
Confidence            23898873

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=93.88  E-value=0.39  Score=39.54  Aligned_cols=56  Identities=21%  Similarity=0.379  Sum_probs=33.6

Q ss_pred             CCCeEEEecCCcc---HHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCC--eEEEEccCCC
Q 046346          143 GLNSLVDVGGGTG---TAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVN--LKYVGGDMFK  198 (209)
Q Consensus       143 ~~~~vlDvGgG~G---~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~r--i~~~~gD~~~  198 (209)
                      +...+||||||--   ..-.-..+..|+.|++=+|. |-|+..++.   ..++  ..++.+|+.+
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~  132 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD  132 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence            7899999999954   44444556689999999998 777777775   2334  8999999987

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=93.82  E-value=0.22  Score=41.68  Aligned_cols=67  Identities=18%  Similarity=0.250  Sum_probs=45.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEeec-hHHHhhccc-------CCCCeEEEEccCCC--CCC---
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKA-------FPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK--AIS---  201 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~-------~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~--~~p---  201 (209)
                      ....+|+|-.||+|.++.++.+.       .+..+..++|+ +.++..|+-       .........+|.+.  ...   
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~  124 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ  124 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            34568999999999999998885       48888999999 555554441       12334578899886  232   


Q ss_pred             CCcEEEe
Q 046346          202 PADAVVL  208 (209)
Q Consensus       202 ~~D~~~l  208 (209)
                      .+|+++.
T Consensus       125 ~~D~ii~  131 (311)
T PF02384_consen  125 KFDVIIG  131 (311)
T ss_dssp             -EEEEEE
T ss_pred             ccccccC
Confidence            3898874

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=93.78  E-value=0.52  Score=38.93  Aligned_cols=90  Identities=19%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             HHHHHHHhhhHh----hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHH-Hhhccc------
Q 046346          117 FFNEAMASDARL----ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHV-VNGLES------  184 (209)
Q Consensus       117 ~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v-~~~a~~------  184 (209)
                      .|..+|...++.    -+..++..++  .....+|++-|-|+|.++.++++.- |.=+..-+|..+. .+.|.+      
T Consensus        77 LWTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg  154 (314)
T KOG2915|consen   77 LWTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG  154 (314)
T ss_pred             HhhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC
Confidence            355566554432    2456677777  7788999999999999999999996 7767888888332 334443      


Q ss_pred             CCCCeEEEEccCCC-CCC--C--CcEEEe
Q 046346          185 DLVNLKYVGGDMFK-AIS--P--ADAVVL  208 (209)
Q Consensus       185 ~~~ri~~~~gD~~~-~~p--~--~D~~~l  208 (209)
                      ..+.+++..-|... .++  .  ||.++|
T Consensus       155 i~~~vt~~hrDVc~~GF~~ks~~aDaVFL  183 (314)
T KOG2915|consen  155 IGDNVTVTHRDVCGSGFLIKSLKADAVFL  183 (314)
T ss_pred             CCcceEEEEeecccCCccccccccceEEE
Confidence            47889999999887 233  2  898887

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=93.77  E-value=0.085  Score=46.95  Aligned_cols=52  Identities=27%  Similarity=0.455  Sum_probs=41.7

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEc
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGG  194 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~g  194 (209)
                      ++....++||-||||.++.++++...  +++++++ |+.++.|+.     ...+.+|+.|
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~g  438 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQINGISNATFIVG  438 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcCccceeeeec
Confidence            56679999999999999999988754  4677777 777776664     3578899998

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=93.70  E-value=0.19  Score=39.31  Aligned_cols=61  Identities=26%  Similarity=0.353  Sum_probs=47.6

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCCCcEEE
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISPADAVV  207 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~~D~~~  207 (209)
                      .++.|+|.|+|.++.-.+++  .-|++..++ |.....|.+     -..+++.+.||..+ .+..+|+++
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvi  101 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVI  101 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeH
Confidence            68899999999999877777  456888887 666666664     24689999999987 675688774

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.60  E-value=0.098  Score=44.62  Aligned_cols=65  Identities=23%  Similarity=0.407  Sum_probs=43.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCe-EEEeechHHHh----h-ccc-CCCCeEEEEccCCC---CCCCCcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDLPHVVN----G-LES-DLVNLKYVGGDMFK---AISPADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dlp~v~~----~-a~~-~~~ri~~~~gD~~~---~~p~~D~~~l  208 (209)
                      .++|||||-|+|.-+.++-.-+|+++ +++++....+.    . +.. ...+..+-..|+..   ++|.+|.|.|
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl  188 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTL  188 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeeh
Confidence            57899999999999999999999996 67777743332    1 111 12223334455544   5777787754

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=93.33  E-value=0.099  Score=44.88  Aligned_cols=60  Identities=18%  Similarity=0.319  Sum_probs=40.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEcc
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGD  195 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD  195 (209)
                      ..+++.++  ..+ ..++|+=||.|.++..+++....  ++++|. +++++.|+.     ..++++|+.++
T Consensus       187 ~~~~~~l~--~~~-~~vlDlycG~G~fsl~la~~~~~--V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~  252 (352)
T PF05958_consen  187 EQALEWLD--LSK-GDVLDLYCGVGTFSLPLAKKAKK--VIGVEIVEEAVEDARENAKLNGIDNVEFIRGD  252 (352)
T ss_dssp             HHHHHHCT--T-T-TEEEEES-TTTCCHHHHHCCSSE--EEEEES-HHHHHHHHHHHHHTT--SEEEEE--
T ss_pred             HHHHHHhh--cCC-CcEEEEeecCCHHHHHHHhhCCe--EEEeeCCHHHHHHHHHHHHHcCCCcceEEEee
Confidence            44445444  333 37999999999999999988754  777887 778887774     35789998765

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=92.94  E-value=0.46  Score=41.04  Aligned_cols=68  Identities=16%  Similarity=0.135  Sum_probs=52.7

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCC---------------------------------------eEEEeec-hHHHh
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKL---------------------------------------ECTCFDL-PHVVN  180 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l---------------------------------------~~~~~Dl-p~v~~  180 (209)
                      |.+...++|==||+|+++++.+...++.                                       ..+++|+ +.+++
T Consensus       189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~  268 (381)
T COG0116         189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE  268 (381)
T ss_pred             CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence            5556899999999999999998888642                                       1668998 78888


Q ss_pred             hccc------CCCCeEEEEccCCC-CCC--CCcEEEe
Q 046346          181 GLES------DLVNLKYVGGDMFK-AIS--PADAVVL  208 (209)
Q Consensus       181 ~a~~------~~~ri~~~~gD~~~-~~p--~~D~~~l  208 (209)
                      .|+.      ..+.|+|..+|+.. +-|  .+|+++.
T Consensus       269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~  305 (381)
T COG0116         269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVIS  305 (381)
T ss_pred             HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEe
Confidence            7764      57889999999865 323  3787763

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=92.42  E-value=0.59  Score=37.17  Aligned_cols=61  Identities=26%  Similarity=0.434  Sum_probs=39.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhhccc-----CCCCeE-EEEccCCC-C-CCC--CcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLES-----DLVNLK-YVGGDMFK-A-ISP--ADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~-----~~~ri~-~~~gD~~~-~-~p~--~D~~~  207 (209)
                      .-..||+||||||..-    +-|   |..++|.+|- |.+.+.+.+     ...+++ |+.++--+ + +++  +|.|+
T Consensus        76 ~K~~vLEvgcGtG~Nf----kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV  150 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANF----KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV  150 (252)
T ss_pred             CccceEEecccCCCCc----ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence            4467899999999753    334   4567899997 555554432     345666 77777754 3 343  67764

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=92.26  E-value=0.39  Score=39.80  Aligned_cols=65  Identities=17%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             CCeEEEecCCccHHHHH-HHHHC-CCCeEEEeec-hHHHhhccc-------CCCCeEEEEccCCC---CCCCCcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKA-IAKAF-PKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK---AISPADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~-l~~~~-P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~---~~p~~D~~~l  208 (209)
                      +.+|+=||+|+=-++.- +++++ ++.+++++|+ |+.++.+++       +..+++|+.+|..+   ++-.+|+|++
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence            46999999997666654 44443 7888999999 777777764       47899999999875   3455899986

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK10742 putative methyltransferase; Provisional

Probab=92.05  E-value=0.55  Score=38.28  Aligned_cols=74  Identities=19%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             HHHHHhccccccCC--CeEEEecCCccHHHHHHHHHCCCCeEEEeechHHH-h-------hccc-------CCCCeEEEE
Q 046346          131 SVMIQKCKNVFEGL--NSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVV-N-------GLES-------DLVNLKYVG  193 (209)
Q Consensus       131 ~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~-~-------~a~~-------~~~ri~~~~  193 (209)
                      +.++++..  +.+.  .+|||.=+|.|..+..++.+  +.+++.++...++ .       .+..       ...|++.+.
T Consensus        76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            55677765  4443  39999999999999999999  6669999984333 2       2210       125899999


Q ss_pred             ccCCC---CCCC-CcEEEe
Q 046346          194 GDMFK---AISP-ADAVVL  208 (209)
Q Consensus       194 gD~~~---~~p~-~D~~~l  208 (209)
                      +|..+   ..+. +|+|+|
T Consensus       152 ~da~~~L~~~~~~fDVVYl  170 (250)
T PRK10742        152 ASSLTALTDITPRPQVVYL  170 (250)
T ss_pred             CcHHHHHhhCCCCCcEEEE
Confidence            99765   3444 899987

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=91.41  E-value=0.35  Score=38.50  Aligned_cols=54  Identities=19%  Similarity=0.217  Sum_probs=38.3

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCC-CCCC-----CcEEEeC
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AISP-----ADAVVLK  209 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~-~~p~-----~D~~~l~  209 (209)
                      .-++||||+-+......   .++-..++-+||.+.       .+.|  ...||++ |+|.     +|+|.+|
T Consensus        52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~-------~~~I--~qqDFm~rplp~~~~e~FdvIs~S  111 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ-------HPGI--LQQDFMERPLPKNESEKFDVISLS  111 (219)
T ss_pred             cceEEeecccCCCCccc---ccCceeeEEeecCCC-------CCCc--eeeccccCCCCCCcccceeEEEEE
Confidence            36999999987664433   366677888887541       2333  7889999 7872     8998764

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=90.53  E-value=0.72  Score=38.52  Aligned_cols=66  Identities=15%  Similarity=0.180  Sum_probs=47.4

Q ss_pred             CCCeEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHhhccc-----------------------------
Q 046346          143 GLNSLVDVGGGTGT----AAKAIAKAFP----KLECTCFDL-PHVVNGLES-----------------------------  184 (209)
Q Consensus       143 ~~~~vlDvGgG~G~----~~~~l~~~~P----~l~~~~~Dl-p~v~~~a~~-----------------------------  184 (209)
                      +.-+|+..||+||.    +++.+.+..+    +.++++-|+ +.+++.|++                             
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            34799999999996    3444555443    357899999 677776652                             


Q ss_pred             -------CCCCeEEEEccCCC-CCC--C-CcEEEe
Q 046346          185 -------DLVNLKYVGGDMFK-AIS--P-ADAVVL  208 (209)
Q Consensus       185 -------~~~ri~~~~gD~~~-~~p--~-~D~~~l  208 (209)
                             ...+|+|..+|.++ ++|  . +|+|+.
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~c  229 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFC  229 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeH
Confidence                   12578999999998 454  3 999975

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.50  E-value=0.49  Score=35.56  Aligned_cols=60  Identities=22%  Similarity=0.288  Sum_probs=44.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcc-----c-CCCCeEEEEccCCC-CCCC
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE-----S-DLVNLKYVGGDMFK-AISP  202 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~-----~-~~~ri~~~~gD~~~-~~p~  202 (209)
                      .+..+++|+|.|.|.+..+.++.. -...+++++ |..+..++     . ...+.+|..-|.++ ++..
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d  138 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD  138 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence            345899999999999999998886 456788998 55554433     1 46778888888887 5544

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=90.44  E-value=0.52  Score=37.08  Aligned_cols=66  Identities=20%  Similarity=0.294  Sum_probs=45.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCCCcEEEeC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPADAVVLK  209 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~~D~~~l~  209 (209)
                      ..++|||.|.|+|..+++.++..-.- ++.-|. |..++.++-    ..-.|.++..|.--+-|.+|++++.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~-v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~Lag  149 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAE-VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAG  149 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHH-HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEee
Confidence            46999999999999999988875432 333333 555544431    3456888888876644448998763

>PF14338 Mrr_N: Mrr N-terminal domain

Probab=90.35  E-value=0.59  Score=31.91  Aligned_cols=27  Identities=15%  Similarity=0.197  Sum_probs=20.2

Q ss_pred             HHhCCCCC-CCCCceecCHhhhhhhcCC
Q 046346           59 LVSSGNNN-DEEQGYVLTNASKLLLKDN   85 (209)
Q Consensus        59 L~~~g~~e-~~~~~y~~t~~s~~l~~~~   85 (209)
                      |...|+++ ...|.|.+|+.|+.+...+
T Consensus        64 L~~aGli~~~~rG~~~iT~~G~~~l~~~   91 (92)
T PF14338_consen   64 LKKAGLIERPKRGIWRITEKGRKALAEH   91 (92)
T ss_pred             HHHCCCccCCCCCceEECHhHHHHHhhC
Confidence            77788866 4678999999997555433

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=89.87  E-value=2.1  Score=34.34  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc----CCCCeEEEEccCCC---CCCC--CcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----DLVNLKYVGGDMFK---AISP--ADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~----~~~ri~~~~gD~~~---~~p~--~D~~~  207 (209)
                      ..+..+||.||=|-|.+...+.++-|..+.|+---|.|.+.-+.    ..++|....|-+-+   .+|.  +|=|+
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~  174 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY  174 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence            36789999999999999999999999999998888999988775    46778888875544   4554  66544

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=89.78  E-value=0.32  Score=43.34  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=21.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHC
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAF  165 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~  165 (209)
                      ...+++||||||.|.++..++++.
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r~  139 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLERN  139 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhCC
Confidence            456899999999999999999984

; GO: 0008168 methyltransferase activity

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=89.78  E-value=0.75  Score=39.18  Aligned_cols=55  Identities=15%  Similarity=0.154  Sum_probs=38.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------------CCCeEEEEccCCC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------------LVNLKYVGGDMFK  198 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~--------------~~ri~~~~gD~~~  198 (209)
                      +..+|||+|||.|.-+.-..+.. --..+++|+ +..++.|++ .              .-...|+.+|-|.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~  132 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS  132 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc
Confidence            67899999999999999888763 235789999 566776653 0              1245678888775

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=89.64  E-value=0.67  Score=40.39  Aligned_cols=63  Identities=22%  Similarity=0.219  Sum_probs=51.2

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhccc-------CCCCeEEEEccCCCC----CC---CCcEEE
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKA----IS---PADAVV  207 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~~----~p---~~D~~~  207 (209)
                      .++|||+=|=||.++...+..  +. ++|.+|+ ..+++-|++       ..+++.|+.+|.|+-    ..   .+|+|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            789999999999999998887  44 6888999 577777775       257899999999972    22   399998


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      |
T Consensus       296 l  296 (393)
T COG1092         296 L  296 (393)
T ss_pred             E
Confidence            7

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=89.54  E-value=1.1  Score=36.23  Aligned_cols=64  Identities=14%  Similarity=0.108  Sum_probs=36.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhh----cccCCCCeEEEEccCCCCCCC-----CcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HVVNG----LESDLVNLKYVGGDMFKAISP-----ADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp-~v~~~----a~~~~~ri~~~~gD~~~~~p~-----~D~~~  207 (209)
                      ..++|+=|| -.=..+++++-.++..+++|+|+. ..++-    |++..-.|+.+.+|+.+++|.     ||+++
T Consensus        44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFF  117 (243)
T ss_dssp             TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEE
T ss_pred             cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEE
Confidence            458999999 455667777777888899999994 44443    333444599999999999884     79886

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=89.28  E-value=1.1  Score=37.89  Aligned_cols=55  Identities=24%  Similarity=0.399  Sum_probs=40.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeechHH-Hhhccc-------CCC----CeEEEEccCCC
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDLPHV-VNGLES-------DLV----NLKYVGGDMFK  198 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dlp~v-~~~a~~-------~~~----ri~~~~gD~~~  198 (209)
                      +....++|+|||-|.-++-.-++  .+ ..++.|+.+| |++|++       ..+    .+.|+.+|=|.
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~  183 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK  183 (389)
T ss_pred             ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence            56788999999999998887765  33 4689999654 777774       112    46788888664

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=88.91  E-value=2  Score=36.40  Aligned_cols=56  Identities=13%  Similarity=0.226  Sum_probs=39.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCC----CCeEEEeech-HHHhhccc-----CCCCeEE--EEccCCC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFP----KLECTCFDLP-HVVNGLES-----DLVNLKY--VGGDMFK  198 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P----~l~~~~~Dlp-~v~~~a~~-----~~~ri~~--~~gD~~~  198 (209)
                      ....|||+|||+|.-...|++...    ..+.+.+|+. +.++.+..     ..+.+++  +.+||.+
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~  143 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD  143 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence            456899999999998887776653    4678999994 45554432     2244555  8899976

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=88.81  E-value=0.13  Score=35.82  Aligned_cols=61  Identities=15%  Similarity=0.225  Sum_probs=20.2

Q ss_pred             EEecCCccHHHHHHHHHCCCC---eEEEeechH----HHhhccc--CCCCeEEEEccCCC---CCC--CCcEEEe
Q 046346          148 VDVGGGTGTAAKAIAKAFPKL---ECTCFDLPH----VVNGLES--DLVNLKYVGGDMFK---AIS--PADAVVL  208 (209)
Q Consensus       148 lDvGgG~G~~~~~l~~~~P~l---~~~~~Dlp~----v~~~a~~--~~~ri~~~~gD~~~---~~p--~~D~~~l  208 (209)
                      |+||+..|..+..+++..+..   +++.+|..+    +-+..++  ..++++++.+|+.+   .++  .+|++++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence            689999999999988887765   578899843    2222222  46789999999865   233  3787764

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=88.66  E-value=1.1  Score=37.68  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=35.0

Q ss_pred             CCeEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEEc----cCCCC
Q 046346          144 LNSLVDVGGGTGTA-AKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGG----DMFKA  199 (209)
Q Consensus       144 ~~~vlDvGgG~G~~-~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~g----D~~~~  199 (209)
                      ..+++|||+|.-.+ .+--++. .+.++++-|+ +..++.|++       +.+||+.+..    ++|..
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~  170 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDG  170 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTT
T ss_pred             ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchh
Confidence            57899999998855 3444444 4899999999 677777764       5778888654    46653

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=88.44  E-value=1.9  Score=38.56  Aligned_cols=67  Identities=18%  Similarity=0.181  Sum_probs=48.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc----C-CCCeEEEEccCCC---CCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES----D-LVNLKYVGGDMFK---AISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~----~-~~ri~~~~gD~~~---~~p~-~D~~~l  208 (209)
                      ....+|||+++++|.=+..++....+ -..+..|+ +.-++..++    . ..+|.....|..+   .+|. +|.|++
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence            45689999999999999999998865 47788998 344443332    2 3567777777653   3455 899885

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.42  E-value=3.6  Score=33.19  Aligned_cols=68  Identities=16%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeech-HHHhhccc------CCCCeEEEEccCCCCC--------CC-C
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDLP-HVVNGLES------DLVNLKYVGGDMFKAI--------SP-A  203 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dlp-~v~~~a~~------~~~ri~~~~gD~~~~~--------p~-~  203 (209)
                      .-++++++|||.=+|.-+.+++.+-|.- +++.+|.+ ...+.+.+      ....|+++.|+..+.+        ++ +
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf  150 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF  150 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence            4468999999999999999999999984 67888883 33333322      5789999999887632        23 7


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |.+++
T Consensus       151 DfaFv  155 (237)
T KOG1663|consen  151 DFAFV  155 (237)
T ss_pred             eEEEE
Confidence            87775

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=88.16  E-value=2  Score=33.56  Aligned_cols=65  Identities=17%  Similarity=0.142  Sum_probs=47.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC------CCCCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA------ISPADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~------~p~~D~~~l  208 (209)
                      ...++||+=+|||.++.+.+.|+-. +++.+|. ..+....++      ...++..+..|.+.-      .+++|+|++
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl  120 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL  120 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence            3689999999999999999988533 5778887 444444432      347888999987741      223899986

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=88.03  E-value=2  Score=33.12  Aligned_cols=57  Identities=25%  Similarity=0.350  Sum_probs=41.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc----C----CCCeEEEEccCCC
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----D----LVNLKYVGGDMFK  198 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~----~----~~ri~~~~gD~~~  198 (209)
                      ++...||-+|||-=+....+...+++.+.+=+|+|+|++.-++    .    ..+.++++.|+.+
T Consensus        77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~  141 (183)
T PF04072_consen   77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRD  141 (183)
T ss_dssp             TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred             CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence            4566999999999999999999999999999999999875443    1    1235689999985

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=87.85  E-value=2.2  Score=36.72  Aligned_cols=62  Identities=26%  Similarity=0.438  Sum_probs=41.5

Q ss_pred             CcHHHHHHHHHHHhhhHhhHHHHHHhccc-cccCCCeEEEecCCccHHHHHHHHH----CC----CCeEEEeechHHH
Q 046346          111 EPKLNNFFNEAMASDARLATSVMIQKCKN-VFEGLNSLVDVGGGTGTAAKAIAKA----FP----KLECTCFDLPHVV  179 (209)
Q Consensus       111 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~----~P----~l~~~~~Dlp~v~  179 (209)
                      -|+....|...++.       ++++.+.. ..+....+|++|.|+|.++.-+++.    +|    .+++.+++..+-+
T Consensus        51 Apels~lFGella~-------~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L  121 (370)
T COG1565          51 APELSQLFGELLAE-------QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL  121 (370)
T ss_pred             chhHHHHHHHHHHH-------HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence            46777777777653       33333331 1345678999999999999877665    45    5677888874333

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=87.17  E-value=0.52  Score=39.37  Aligned_cols=67  Identities=21%  Similarity=0.387  Sum_probs=50.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCC--CCc
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS--PAD  204 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~-~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p--~~D  204 (209)
                      .++++.++-||||.|-+.++..+. +.+. ...+|. ..|++...+         ..+||..+.||=|.   ..+  .+|
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            457899999999999999999887 7774 677887 455555443         46899999999443   343  388


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      +++.
T Consensus       198 Vii~  201 (337)
T KOG1562|consen  198 VIIT  201 (337)
T ss_pred             EEEE
Confidence            8874

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=86.27  E-value=1  Score=36.49  Aligned_cols=65  Identities=17%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEEccCCC---CCCC--CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK---AISP--ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~---~~p~--~D~~~  207 (209)
                      ....+|||...|-|..+++.+++.-- .++-++- |.|++.|.-       ...+|+.+.||.++   .++.  +|+++
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~-~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi  210 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAI-HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII  210 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCc-EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence            46789999999999999999999542 3443443 888877652       23479999999887   4664  78875

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=86.26  E-value=1.3  Score=36.40  Aligned_cols=36  Identities=19%  Similarity=0.352  Sum_probs=32.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeech
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-----PKLECTCFDLP  176 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-----P~l~~~~~Dlp  176 (209)
                      +.+...+|+.|||.|.++..+++..     +..+++++|+.
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~   56 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA   56 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence            5567899999999999999999999     56789999984

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=86.10  E-value=0.65  Score=37.63  Aligned_cols=42  Identities=19%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCceecCHhh
Q 046346           37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQGYVLTNAS   78 (209)
Q Consensus        37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~y~~t~~s   78 (209)
                      -+.|.+.|.....|.|+.|||+               |+..|+++.++++|.+++.-
T Consensus        11 al~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~~~~Y~lG~~~   67 (248)
T TIGR02431        11 GLAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSDGRLFWLTPRV   67 (248)
T ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEEecHHH
Confidence            3557788876557899999999               77899977777899999864

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=85.60  E-value=0.72  Score=37.81  Aligned_cols=50  Identities=18%  Similarity=0.345  Sum_probs=40.6

Q ss_pred             HHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCceecCHhhhhhhc
Q 046346           32 LKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQGYVLTNASKLLLK   83 (209)
Q Consensus        32 l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~y~~t~~s~~l~~   83 (209)
                      +....+.+|+=.|.+  ||.|.+||-.               |...|+++.+++.|++|+.|..++.
T Consensus        10 f~SekRk~lLllL~e--gPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV~~~~~~Y~LS~~G~iiv~   74 (260)
T COG4742          10 FLSEKRKDLLLLLKE--GPKTIEEIKNELNVSSSAILPQIKKLKDKGLVVQEGDRYSLSSLGKIIVE   74 (260)
T ss_pred             HccHHHHHHHHHHHh--CCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCEEecCCEEEecchHHHHHH
Confidence            344567778888887  8999999988               6678888888999999999987654

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=84.55  E-value=2.3  Score=35.53  Aligned_cols=65  Identities=20%  Similarity=0.229  Sum_probs=48.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C-CCCeEEEEccCCCCC------CCCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D-LVNLKYVGGDMFKAI------SPADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~-~~ri~~~~gD~~~~~------p~~D~~~l  208 (209)
                      ..++|||+=|=||.++...+.. -..+++.+|. ..+++.+++      . .++++|+.+|.|+-+      ..+|+|+|
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            4689999999999999987654 3457899999 577777764      2 468999999998722      23999986

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=84.04  E-value=2.4  Score=36.28  Aligned_cols=65  Identities=22%  Similarity=0.228  Sum_probs=52.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC--CC-CCCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AI-SPADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~--~~-p~~D~~~l  208 (209)
                      ...+|||.=+|-|.+++.+++...-. ++..|+ |..++..++      ..++|+.+.||..+  ++ +.||-++|
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim  262 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIM  262 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEe
Confidence            47999999999999999999886555 999999 887776553      46779999999887  33 44888876

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=83.01  E-value=0.38  Score=29.05  Aligned_cols=21  Identities=33%  Similarity=0.672  Sum_probs=17.4

Q ss_pred             cCchhHhhhCCCCCCHHHHHH
Q 046346           38 LGIPDIINKHGKPMTLNELQK   58 (209)
Q Consensus        38 lglfd~L~~~g~~~t~~eLA~   58 (209)
                      +.|++.|...++++|+.|||+
T Consensus         6 l~iL~~l~~~~~~~t~~eia~   26 (52)
T PF09339_consen    6 LRILEALAESGGPLTLSEIAR   26 (52)
T ss_dssp             HHHHHCHHCTBSCEEHHHHHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHH
Confidence            457888888767789999999

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=82.85  E-value=1.8  Score=35.11  Aligned_cols=33  Identities=27%  Similarity=0.494  Sum_probs=25.3

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCC--------CeEEEeech
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPK--------LECTCFDLP  176 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~--------l~~~~~Dlp  176 (209)
                      .-+|+++|+|+|.++..+++....        ++.++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S   59 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS   59 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence            479999999999999998887543        478889874

; PDB: 4F3N_A 1ZKD_B.

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=82.72  E-value=11  Score=28.47  Aligned_cols=56  Identities=16%  Similarity=0.263  Sum_probs=33.3

Q ss_pred             HHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346          116 NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL  175 (209)
Q Consensus       116 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl  175 (209)
                      ..|.+-|..... -..+......   .-..-|+|+|=|+|..=..|.+.+|+=+++|+|+
T Consensus         5 Dsfi~RmtaQR~-~L~~a~~~v~---~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR   60 (160)
T PF12692_consen    5 DSFIRRMTAQRD-CLNWAAAQVA---GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDR   60 (160)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHTT---T--S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred             HHHHHHHHHHHH-HHHHHHHHhc---CCCCceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence            445555543222 2233344333   2347899999999999999999999999999998

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=82.32  E-value=4  Score=32.38  Aligned_cols=56  Identities=14%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             CCCeEEEecCCcc---HHHHHHHHHC-CCCeEEEeech---HHHhhcc--cCCCCeEEEEccCCC
Q 046346          143 GLNSLVDVGGGTG---TAAKAIAKAF-PKLECTCFDLP---HVVNGLE--SDLVNLKYVGGDMFK  198 (209)
Q Consensus       143 ~~~~vlDvGgG~G---~~~~~l~~~~-P~l~~~~~Dlp---~v~~~a~--~~~~ri~~~~gD~~~  198 (209)
                      ++.+|+++|--.|   .+...+++.. ++.+++.+|+.   ...+..+  ...+||+++.||-.+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d   96 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID   96 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence            5789999996554   4445566666 88899999982   2221111  146899999999765

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=81.98  E-value=2.6  Score=33.66  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C---CCCe-EEEEc---cCCCCCCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D---LVNL-KYVGG---DMFKAISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~---~~ri-~~~~g---D~~~~~p~-~D~~~l  208 (209)
                      +..+.||.|+|.|.++..++-.+= -++-++|- +.-++.|++ +   ..++ ++...   || +|.+. +|+|+.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f-~P~~~~YDlIW~  128 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF-TPEEGKYDLIWI  128 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEE
T ss_pred             CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc-cCCCCcEeEEEe
Confidence            468999999999999998765431 13444554 667777774 2   1232 33332   33 35544 999975

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=81.88  E-value=2.4  Score=34.34  Aligned_cols=41  Identities=10%  Similarity=0.160  Sum_probs=33.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      ....++||||+-|++...|..+. --+.+..|. ..+++.++.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~  113 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRD  113 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhc
Confidence            46899999999999999999886 225788888 578887764

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=81.84  E-value=1.6  Score=35.89  Aligned_cols=61  Identities=21%  Similarity=0.316  Sum_probs=37.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC-CCcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS-PADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p-~~D~~~  207 (209)
                      ...++||||.|.|.++..++..+.++.+|  +. +.|...-+  ...++.+..|=+..-+ .+|+|-
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aT--E~S~~Mr~rL~--~kg~~vl~~~~w~~~~~~fDvIs  156 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYAT--EASPPMRWRLS--KKGFTVLDIDDWQQTDFKFDVIS  156 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEee--cCCHHHHHHHH--hCCCeEEehhhhhccCCceEEEe
Confidence            45789999999999999999999885543  43 44443322  2334444433222222 267663

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=80.15  E-value=2.3  Score=28.38  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC--CCCceecCHhh
Q 046346           37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNND--EEQGYVLTNAS   78 (209)
Q Consensus        37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~--~~~~y~~t~~s   78 (209)
                      -+.|++.|...+++.|+.|||+               |...|+++.  .++.|.+++..
T Consensus         7 ~~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~   65 (91)
T smart00346        7 GLAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKV   65 (91)
T ss_pred             HHHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHH
Confidence            3556778876535899999999               678888543  46779888853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		2e-32
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		9e-30
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		1e-29
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		2e-29
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		1e-28
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		2e-28
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		6e-13
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		1e-11
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		5e-10
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		3e-08
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		9e-06

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 131/251 (52%), Gaps = 47/251 (18%)
Query: 4   IDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLV--- 60
           I+G + +E  +AQ  ++ HI+ FI+SM+LK ++++ IP+II  HGKP++L+ L  ++   
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 61  SSGNNN------------------DEEQGYVLTNASKLLLKDNPLS-------------- 88
           SS   N                   EE+ Y LT AS+LL++ + L               
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124
Query: 89  ---QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCK 138
               +L+ W   +D T FG        ++    P+ N  FN+AMASD++L  ++ ++ C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCD 183
Query: 139 NVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198
            VF+GL S+VDV              FPKL+C  FD P VV  L S   NL YVGGDMF 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFT 242
Query: 199 AISPADAVVLK 209
           +I  ADAV+LK
Sbjct: 243 SIPNADAVLLK 253

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  126 bits (316), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/251 (34%), Positives = 127/251 (50%), Gaps = 47/251 (18%)
Query: 4   IDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLV--- 60
           I+G + +E  +AQ  ++ HI+ FI+S +LK +++  IP+II  HGKP++L+ L  ++   
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 61  SSGNNN------------------DEEQGYVLTNASKLLLKDNPLS-------------- 88
           SS   N                   EE+ Y LT AS+LL++ + L               
Sbjct: 65  SSKIGNVRRLXRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPXVECVLDPTLS 124
Query: 89  ---QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCK 138
               +L+ W   +D T FG        ++    P+ N  FN+A ASD++L  ++ ++ C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKL-INLALRDCD 183
Query: 139 NVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198
            VF+GL S+VDV              FPKL+C  FD P VV  L S   NL YVGGD F 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDXFT 242
Query: 199 AISPADAVVLK 209
           +I  ADAV+LK
Sbjct: 243 SIPNADAVLLK 253

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 126/256 (49%), Gaps = 52/256 (20%)
Query: 4   IDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNEL------- 56
           I+  + +E  +AQ  ++ +++ F++SM+LK SI++ IP+II+ HGKP+TL+ L       
Sbjct: 5   INNRKPSEIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIP 64
Query: 57  -------QKLVSSGNNN------------DEEQGYVLTNASKLLLKDNPLS--------- 88
                  Q+L+    +N            +EE+ Y LT AS+LL+K   L          
Sbjct: 65  STKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVL 124
Query: 89  --------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVM 133
                     L+ W   +D T F         E+    P+ N  +N+A+ASD+++    M
Sbjct: 125 DPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAM 184
Query: 134 IQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVG 193
            + C  VFEGL S+VDV              FPKL C  FD P VV  L     NL YVG
Sbjct: 185 -KDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGS-NNLTYVG 242
Query: 194 GDMFKAISPADAVVLK 209
           GDMF ++  ADAV+LK
Sbjct: 243 GDMFISVPKADAVLLK 258

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 123/260 (47%), Gaps = 58/260 (22%)
Query: 6   GERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQ---KLVSS 62
           G  ++E   AQIH++ H++NF++SM LK +++LGI D I+ HGKPMTL+EL    KL  S
Sbjct: 1   GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPS 60
Query: 63  GNN--------------------------NDEEQGYVLTNASKLLLKDNP---------- 86
             N                           +EE  Y LT  SKLL+   P          
Sbjct: 61  KVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGA 120
Query: 87  -------LSQQLRSWFQNDDPTPFGTEYDGD----------EPKLNNFFNEAMASDARLA 129
                  +    + WF  D          G+          E    + F +AMASD+R+ 
Sbjct: 121 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180
Query: 130 TSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNL 189
             +++Q+ K VFEGL SLVDV              FP L+CT FD P VV  L  +  NL
Sbjct: 181 -KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENL 238
Query: 190 KYVGGDMFKAISPADAVVLK 209
            +VGGDMFK+I  ADAV+LK
Sbjct: 239 NFVGGDMFKSIPSADAVLLK 258

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/258 (35%), Positives = 122/258 (47%), Gaps = 58/258 (22%)
Query: 8   RDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQ---KLVSSGN 64
            ++E   AQIH++ H++NF++SM LK +++LGI D I+ HGKPMTL+EL    KL  S  
Sbjct: 2   EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKV 61
Query: 65  N--------------------------NDEEQGYVLTNASKLLLKDNP------------ 86
           N                           +EE  Y LT  SKLL+   P            
Sbjct: 62  NILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALH 121
Query: 87  -----LSQQLRSWFQNDDPTPFGTEYDGD----------EPKLNNFFNEAMASDARLATS 131
                +    + WF  D          G+          E    + F +AMASD+R+   
Sbjct: 122 PSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-K 180
Query: 132 VMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKY 191
           +++Q+ K VFEGL SLVDV              FP L+CT FD P VV  L  +  NL +
Sbjct: 181 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNF 239
Query: 192 VGGDMFKAISPADAVVLK 209
           VGGDMFK+I  ADAV+LK
Sbjct: 240 VGGDMFKSIPSADAVLLK 257

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/256 (35%), Positives = 121/256 (47%), Gaps = 58/256 (22%)
Query: 10  TEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQ---KLVSSGNN- 65
           +E   AQIH++ H++NF++SM LK +++LGI D I+ HGKPMTL+EL    KL  S  N 
Sbjct: 1   SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNI 60
Query: 66  -------------------------NDEEQGYVLTNASKLLLKDNP-------------- 86
                                     +EE  Y LT  SKLL+   P              
Sbjct: 61  LHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPS 120
Query: 87  ---LSQQLRSWFQNDDPTPFGTEYDGD----------EPKLNNFFNEAMASDARLATSVM 133
              +    + WF  D          G+          E    + F +AMASD+R+   ++
Sbjct: 121 SLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-KLV 179
Query: 134 IQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVG 193
           +Q+ K VFEGL SLVDV              FP L+CT FD P VV  L  +  NL +VG
Sbjct: 180 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVG 238
Query: 194 GDMFKAISPADAVVLK 209
           GDMFK+I  ADAV+LK
Sbjct: 239 GDMFKSIPSADAVLLK 254

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 98/234 (41%), Gaps = 56/234 (23%)
Query: 30  MTLKCSIQLGIPDIINKHG--------------------KPMTLNELQKL---------- 59
           M LK +++L + +II K G                     P+ L+ + +L          
Sbjct: 34  MILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCS 93
Query: 60  VSSGNNNDEEQGYVLTNASKLLLKD---------NPLSQQ---LRSWFQNDDPT-----P 102
           V +  +   ++ Y L   +K L+K+         N ++Q    + SW+   D       P
Sbjct: 94  VRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIP 153
Query: 103 F-------GTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXX 155
           F         EY G +P+ N  FN+ M SD    T   I +    FEGL SLVDV     
Sbjct: 154 FNKAYGMTAFEYHGTDPRFNKVFNKGM-SDHSTITMKKILETYTGFEGLKSLVDVGGGTG 212
Query: 156 XXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
                    +P ++   FDLPHV+    S    +++VGGDMF +I  ADAV +K
Sbjct: 213 AVINTIVSKYPTIKGINFDLPHVIEDAPS-YPGVEHVGGDMFVSIPKADAVFMK 265

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 165
           EY G +P+ N  FNE M + + + T  +++   + FEGL +LVDV              +
Sbjct: 165 EYHGTDPRFNRVFNEGMKNHSIIITKKLLE-LYHGFEGLGTLVDVGGGVGATVAAIAAHY 223
Query: 166 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
           P ++   FDLPHV++        + +VGGDMFK +   D +++K
Sbjct: 224 PTIKGVNFDLPHVISE-APQFPGVTHVGGDMFKEVPSGDTILMK 266

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 165
           +Y G + ++N  FN+ M+S++ + T   I +  N FEGL ++VDV              +
Sbjct: 167 DYHGTDHRINKVFNKGMSSNSTI-TMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY 225
Query: 166 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
           P +    FDLPHV+    +    ++++GGDMF  +   DA+ +K
Sbjct: 226 PSINAINFDLPHVIQDAPA-FSGVEHLGGDMFDGVPKGDAIFIK 268

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 165
           E+ G + K+N  FN++M          M++     FEG+++LVDV              +
Sbjct: 173 EFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTG-FEGISTLVDVGGGSGRNLELIISKY 231
Query: 166 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
           P ++   FDLP V+      L  +++VGGDMF ++   DA++LK
Sbjct: 232 PLIKGINFDLPQVIEN-APPLSGIEHVGGDMFASVPQGDAMILK 274

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 165
           E+ G + K N  FN++   D          +    FEG+++LVDV              +
Sbjct: 173 EFXGKDKKXNQIFNKSXV-DVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKY 231
Query: 166 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK 209
           P ++   FDLP V+      L  +++VGGD F ++   DA +LK
Sbjct: 232 PLIKGINFDLPQVIEN-APPLSGIEHVGGDXFASVPQGDAXILK 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	7e-70
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-68
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	4e-65
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	1e-63
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	8e-63
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	9e-63
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	6e-62
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	2e-61
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	2e-60
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	2e-59
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	9e-58
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	4e-57
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	6e-47
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	8e-47
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	3e-46

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  215 bits (550), Expect = 7e-70
 Identities = 96/251 (38%), Positives = 135/251 (53%), Gaps = 47/251 (18%)

Query: 4   IDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK----- 58
           I+G + +E  +AQ  ++ HI+ FI+SM+LK ++++ IP+II  HGKP++L+ L       
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64

Query: 59  -------------LVSSGNN---NDEEQGYVLTNASKLLLKDNPLSQ------------- 89
                        L  +G       EE+ Y LT AS+LL++ + L               
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124

Query: 90  ----QLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCK 138
               +L+ W   +D T FG        ++    P+ N  FN+AMASD++L    +   C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CD 183

Query: 139 NVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198
            VF+GL S+VDVGGGTGT AK I + FPKL+C  FD P VV  L     NL YVGGDMF 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS-NNLTYVGGDMFT 242

Query: 199 AISPADAVVLK 209
           +I  ADAV+LK
Sbjct: 243 SIPNADAVLLK 253

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  212 bits (542), Expect = 1e-68
 Identities = 44/246 (17%), Positives = 83/246 (33%), Gaps = 46/246 (18%)

Query: 6   GERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK------- 58
              D + L++ + ++     +  +  L+ +  +G+ D +     P T  EL         
Sbjct: 13  AGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHL--VDGPRTPAELAAATGTDAD 70

Query: 59  --------LVSSGNNNDEEQGYVLTNASKLLLKDNPLSQ-----------------QLRS 93
                   L       + +  + LT+    L  D+P+                   ++ S
Sbjct: 71  ALRRVLRLLAVRDVVRESDGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVAS 130

Query: 94  WFQNDDP---TPFGT---EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSL 147
               + P     FG+    Y   + ++   + E M + +     ++ +     F    ++
Sbjct: 131 ALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG--DFPATGTV 188

Query: 148 VDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLV----NLKYVGGDMFKAISPA 203
            DVGGG G     + +  P L+    D   VV     D        K V GD  + +  A
Sbjct: 189 ADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHA 248

Query: 204 DAVVLK 209
           D  VLK
Sbjct: 249 DVHVLK 254

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  203 bits (519), Expect = 4e-65
 Identities = 97/260 (37%), Positives = 132/260 (50%), Gaps = 58/260 (22%)

Query: 6   GERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK------- 58
           G  ++E   AQIH++ H++NF++SM LK +++LGI D I+ HGKPMTL+EL         
Sbjct: 1   GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPS 60

Query: 59  -----------LVSSG-----------NNNDEEQGYVLTNASKLLLKDNPLSQ------- 89
                      L  +G            + +EE  Y LT  SKLL+   P          
Sbjct: 61  KVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGA 120

Query: 90  ----------QLRSWFQND-DPTPFGT-------EYDGDEPKLNNF--FNEAMASDARLA 129
                       + WF  D + T F         ++   + + +    F +AMASD+R+ 
Sbjct: 121 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180

Query: 130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNL 189
             V+ +  K VFEGL SLVDVGGGTG   K I + FP L+CT FD P VV  L  +  NL
Sbjct: 181 KLVLQE-NKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENL 238

Query: 190 KYVGGDMFKAISPADAVVLK 209
            +VGGDMFK+I  ADAV+LK
Sbjct: 239 NFVGGDMFKSIPSADAVLLK 258

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  200 bits (510), Expect = 1e-63
 Identities = 49/248 (19%), Positives = 86/248 (34%), Gaps = 51/248 (20%)

Query: 9   DTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------- 58
                 A+  V + +     +  +  +++LG+P+++     P T   L +          
Sbjct: 32  TAARAAAEETVNDILQGAWKARAIHVAVELGVPELL--QEGPRTATALAEATGAHEQTLR 89

Query: 59  -----LVSSG--NNNDEEQGYVLTNASKLLLKDNPLS-----------------QQLRSW 94
                L + G  ++   +  +     S +LL D                     +QL   
Sbjct: 90  RLLRLLATVGVFDDLGHDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHS 149

Query: 95  FQNDDP---TPFGT---EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLV 148
            +  +       GT   +   ++PK    FN AM S +      +       F G  + V
Sbjct: 150 VRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY--DFSGAATAV 207

Query: 149 DVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAI-S 201
           D+GGG G+   A+  AFP L  T  + P V       L         + + GD F+ I  
Sbjct: 208 DIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPD 267

Query: 202 PADAVVLK 209
            AD  ++K
Sbjct: 268 GADVYLIK 275

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  198 bits (505), Expect = 8e-63
 Identities = 47/259 (18%), Positives = 75/259 (28%), Gaps = 54/259 (20%)

Query: 1   MNLIDGERDTEPL-EAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK- 58
           M+        EP  +    +  ++ N +  M L+ +  L + D +       TL  L   
Sbjct: 1   MSSSSPGEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADR 58

Query: 59  --------------LVSSG---NNNDEEQGYVLTNASKLLLKDNPLSQ------------ 89
                         L   G       + +    T    LL   +P  Q            
Sbjct: 59  TDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSH 118

Query: 90  QLRSWFQNDDP-----TPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKC 137
              ++    D        +         E    +  L + F+  M+ D  LA        
Sbjct: 119 ADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAY 178

Query: 138 KNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLV------NLKY 191
              +  +  ++DVGGG G    AIA   P L  T  +L                   +  
Sbjct: 179 D--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTV 236

Query: 192 VGGDMFKAISP-ADAVVLK 209
             GD FK +   AD V+L 
Sbjct: 237 AEGDFFKPLPVTADVVLLS 255

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  197 bits (502), Expect = 9e-63
 Identities = 44/243 (18%), Positives = 75/243 (30%), Gaps = 51/243 (20%)

Query: 14  EAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK--------------- 58
            A       + +    M ++ +  L + D I       T  E+                 
Sbjct: 4   RAAHIGLRALADLATPMAVRVAATLRVADHI--AAGHRTAAEIASAAGAHADSLDRLLRH 61

Query: 59  LVSSGN-NNDEEQGYVLTNASKLLLKDNPLSQQ------------LRSWFQ-----NDDP 100
           LV+ G    D +  Y LT   + L  D+   ++               + +         
Sbjct: 62  LVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ 121

Query: 101 TPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGG 153
             +         E  G +P L+  F+  M+    L  + +  K    +  L  +VDVGGG
Sbjct: 122 PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAALGHVVDVGGG 179

Query: 154 TGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAI-SPADAV 206
           +G    A+  A   L  T  DL    +      +        + V G  F  + + A   
Sbjct: 180 SGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGY 239

Query: 207 VLK 209
           VL 
Sbjct: 240 VLS 242

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  196 bits (499), Expect = 6e-62
 Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 60/259 (23%)

Query: 9   DTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKP---MTLNELQK------- 58
           +     A +       N +    L  +I L + +II K   P   M+ +E+         
Sbjct: 18  EQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQ 77

Query: 59  --------------LVSSG---------NNNDEEQGYVLTNASKLLLKDNPLS------- 88
                         L S            +   E+ Y L+   K L+ D           
Sbjct: 78  HSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTT 137

Query: 89  -----------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLAT 130
                         +    ++D   F         E+ G + K+N  FN++M        
Sbjct: 138 FLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEM 197

Query: 131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLK 190
             M+ +    FEG+++LVDVGGG+G   + I   +P ++   FDLP V+         ++
Sbjct: 198 KRML-EIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLS-GIE 255

Query: 191 YVGGDMFKAISPADAVVLK 209
           +VGGDMF ++   DA++LK
Sbjct: 256 HVGGDMFASVPQGDAMILK 274

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  194 bits (495), Expect = 2e-61
 Identities = 45/244 (18%), Positives = 87/244 (35%), Gaps = 47/244 (19%)

Query: 9   DTEPLEAQIHVWNHIFN-FINSMTLKCSIQLGIPDIINKHGKPMTLNELQK--------- 58
           + + L         +F   I    +K +I+L +   +     P  L  L           
Sbjct: 24  NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHM--AEGPKDLATLAADTGSVPPRL 81

Query: 59  ------LVSSGNNNDEEQGYVLTNASKLLLKDNPLS--------------------QQLR 92
                 L      N E+  + LT  +  +    P                        L 
Sbjct: 82  EMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLS 141

Query: 93  SWFQNDDPTPFGTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGG 152
              +          Y     + N +F E   S+A+ A  +++++ K   +G+  ++DVGG
Sbjct: 142 QAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGG 199

Query: 153 GTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLV------NLKYVGGDMFK-AISPADA 205
           G G  + A+ K FP+L+ T  +LP  ++ +  +         ++ +  D++K +   ADA
Sbjct: 200 GIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADA 259

Query: 206 VVLK 209
           V+  
Sbjct: 260 VLFC 263

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  192 bits (489), Expect = 2e-60
 Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 57/256 (22%)

Query: 9   DTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKP---MTLNELQK------- 58
            +   EA +         +  M LK +I+L + +I+ K   P   ++  E+         
Sbjct: 15  HSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNP 74

Query: 59  ------------LVSSG---------NNNDEEQGYVLTNASKLLLKDNPLSQQ------- 90
                       L S            +   E+ Y L    K L K+             
Sbjct: 75  EAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLA 134

Query: 91  -----LRSWFQNDD-----PTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVM 133
                L  WF   D       PF         +Y G + ++N  FN+ M+S++ +    +
Sbjct: 135 TDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKI 194

Query: 134 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVG 193
           ++     FEGL ++VDVGGGTG  A  I   +P +    FDLPHV+    +    ++++G
Sbjct: 195 LEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFS-GVEHLG 252

Query: 194 GDMFKAISPADAVVLK 209
           GDMF  +   DA+ +K
Sbjct: 253 GDMFDGVPKGDAIFIK 268

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  189 bits (482), Expect = 2e-59
 Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 51/247 (20%)

Query: 10  TEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK----------- 58
                  +     + +    M ++ +  L + D I       T+  L             
Sbjct: 14  RPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHI--LAGARTVKALAARTDTRPEALLR 71

Query: 59  ----LVSSGN-NNDEEQGYVLTNASKLLLKDNPLSQ------------------QLRSWF 95
               LV+ G    D    +V T   +LL  D+P +Q                  +L    
Sbjct: 72  LIRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAI 131

Query: 96  QNDDP---TPFGT---EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVD 149
           +   P   + +G    E     P L   F+  +A D  +A           +  +  ++D
Sbjct: 132 RTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLD 189

Query: 150 VGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAI-SP 202
           VGGG G  A AIA+  P +  T  ++   V+   S L        +  V GD F+ +   
Sbjct: 190 VGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRK 249

Query: 203 ADAVVLK 209
           ADA++L 
Sbjct: 250 ADAIILS 256

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  185 bits (471), Expect = 9e-58
 Identities = 65/264 (24%), Positives = 103/264 (39%), Gaps = 57/264 (21%)

Query: 1   MNLIDGERDTEP-LEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINK-HGKPMTLNELQK 58
           M     +       +A +       + +  MTLK +I+LG+ +I+    GK +T  E+  
Sbjct: 5   MGSTAADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAA 64

Query: 59  --------------------LVSSG---------NNNDEEQGYVLTNASKLLLKDNPLSQ 89
                               L S            +    + Y      K L  +     
Sbjct: 65  KLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVS 124

Query: 90  Q------------LRSWFQN-----DDPTPFGT-------EYDGDEPKLNNFFNEAMASD 125
                        + SW+       D   PF         EY G +P+ N  FNE M + 
Sbjct: 125 MAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNH 184

Query: 126 ARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESD 185
           + + T  ++ +  + FEGL +LVDVGGG G    AIA  +P ++   FDLPHV++     
Sbjct: 185 SIIITKKLL-ELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF 243

Query: 186 LVNLKYVGGDMFKAISPADAVVLK 209
              + +VGGDMFK +   D +++K
Sbjct: 244 P-GVTHVGGDMFKEVPSGDTILMK 266

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  182 bits (464), Expect = 4e-57
 Identities = 51/246 (20%), Positives = 75/246 (30%), Gaps = 52/246 (21%)

Query: 9   DTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------- 58
           +   L A  ++   +     S  +  + +LG+ D+I       +   L            
Sbjct: 2   NNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLI--ESGIDSDETLAAAVGSDAERIH 59

Query: 59  -----LVSSGN-NNDEEQGYVLTNASKLLLKDNPLSQ----------------QLRSWFQ 96
                LV+      D   GY  T  S LL +D   S                        
Sbjct: 60  RLMRLLVAFEIFQGDTRDGYANTPTSHLL-RDVEGSFRDMVLFYGEEFHAAWTPACEALL 118

Query: 97  NDDP---TPFGT---EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDV 150
           +  P     FG     Y    P     F  AM +       +  +     F G  S VDV
Sbjct: 119 SGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEI-PRLLD--FRG-RSFVDV 174

Query: 151 GGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAISP-A 203
           GGG+G   KAI +A P       D    +     +L        +  VGGDM + +    
Sbjct: 175 GGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNG 234

Query: 204 DAVVLK 209
           D  +L 
Sbjct: 235 DIYLLS 240

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  156 bits (396), Expect = 6e-47
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 43/236 (18%)

Query: 15  AQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------L 59
           +    +N +  +  S  +K +++L +   I       +   L +               L
Sbjct: 6   SPALFFNTVNAYQRSAAIKAAVELNVFTAI--SQGIESSQSLAQKCQTSERGMRMLCDYL 63

Query: 60  VSSGNNNDEEQGYVLTNASKLLL-KDNPLSQ-----------------QLRSWFQNDDPT 101
           V  G    + +GY LT+ S + L + +                      L +        
Sbjct: 64  VIIGFMTKQAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTA 123

Query: 102 PFGTEYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAI 161
                    E  +   F +AM+        ++ Q           ++D+    G    A+
Sbjct: 124 ISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAV 183

Query: 162 AKAFPKLECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAISP--ADAVVLK 209
           A+  P  E    D   V+   + +            + G  F+       D V+L 
Sbjct: 184 AQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLP 239

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  156 bits (397), Expect = 8e-47
 Identities = 44/247 (17%), Positives = 74/247 (29%), Gaps = 50/247 (20%)

Query: 11  EPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK------------ 58
              EAQ       F  +     +  ++ GI  +++   +  TL E+              
Sbjct: 11  TAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVL 70

Query: 59  ---LVSSGNNNDEEQGYVLTNASKLLLKDNPLS--------------QQLRSWFQNDDPT 101
               ++ G    EE  YVL  A   LL D                    L     N  P 
Sbjct: 71  LEASLTIGTILLEEDRYVLAKAGWFLLNDKMARVNMEFNHDVNYQGLFHLEEALLNGRPE 130

Query: 102 P---FG---TEYDG---DEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGG 152
               FG   T Y+G      ++   +       +  +    ++           L+D+GG
Sbjct: 131 GLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF--SHHPKRLLDIGG 188

Query: 153 GTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAISP---- 202
            TG  A    +   ++E T  DLP  +  +            +   G ++     P    
Sbjct: 189 NTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTG 248

Query: 203 ADAVVLK 209
            DAV + 
Sbjct: 249 FDAVWMS 255

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  155 bits (393), Expect = 3e-46
 Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 47/243 (19%)

Query: 9   DTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------- 58
           D   L + + +      +  S  L  ++   + D+        T  E+            
Sbjct: 18  DKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLT---QTGRTPAEVAASFGMVEGKAA 74

Query: 59  -----LVSSGNNNDEEQGYVLTN-ASKLLLKDNPLSQ---------------QLRSWFQN 97
                L + G    E   +  T    + L   +                   +L    ++
Sbjct: 75  ILLHALAALGLLTKEGDAFRNTALTERYLTTTSADYIGPIVEHQYLQWDNWPRLGEILRS 134

Query: 98  DDPTPFGT-EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT 156
           + P  F        + +  + FN+AM   ++    V+ +    VF    +++D+ GG GT
Sbjct: 135 EKPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG--VFARARTVIDLAGGHGT 192

Query: 157 AAKAIAKAFPKLECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAISP----ADAV 206
               + +  P+L    +DLP   +     +        +++   ++  A +     AD V
Sbjct: 193 YLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVV 252

Query: 207 VLK 209
           +L 
Sbjct: 253 MLN 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.97
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.97
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.97
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.97
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.97
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.97
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.97
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.97
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.96
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.96
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.96
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.95
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.94
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.94
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.94
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.12
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.01
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.93
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.91
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.87
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.84
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.83
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.83
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.83
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.81
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.81
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.79
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.79
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.78
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.78
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.77
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.77
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.77
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.76
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.76
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.76
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.76
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.76
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.76
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.75
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.75
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.75
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.74
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.74
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.74
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.74
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.73
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.73
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.73
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.72
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.71
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.71
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.7
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.7
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.7
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.7
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.69
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.69
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.69
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.67
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.67
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.67
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.67
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.66
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.66
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.66
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.66
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.66
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.65
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.65
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.64
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.64
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.64
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.63
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.63
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.63
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.62
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.62
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.61
3ocj_A	305	Putative exported protein; structural genomics, PS	98.59
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.59
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.59
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.59
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.59
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.59
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.58
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.58
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.58
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.58
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.58
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.58
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.58
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.58
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.57
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.57
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.57
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.56
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.56
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.56
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.56
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.55
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.55
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.55
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.54
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.54
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.54
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.54
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.54
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.53
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.53
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.53
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.53
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.53
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.53
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.53
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.52
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.52
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.51
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.51
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.51
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.51
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.51
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.5
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.5
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.5
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.49
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.49
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.49
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.48
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.48
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.48
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.48
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.47
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.47
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.47
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.47
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.46
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.46
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.46
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.46
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.46
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.46
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.46
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.45
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.45
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.44
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.43
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.42
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.42
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.42
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.42
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.42
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.41
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.41
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.41
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.41
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.41
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.41
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.41
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.4
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.39
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.39
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.39
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.39
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.38
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.38
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.38
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.38
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.38
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.38
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.37
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.37
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.37
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.37
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.37
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.37
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.37
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.36
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.36
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.36
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.36
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.35
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.34
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.34
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.34
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.33
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.33
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.33
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.33
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.33
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.33
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.33
2o07_A	304	Spermidine synthase; structural genomics, structur	98.32
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.32
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.31
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.31
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.3
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.29
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.28
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.27
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.27
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.27
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.26
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.26
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.26
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.25
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.25
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.24
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.24
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.24
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.23
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.22
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.22
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.21
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.21
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.21
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.2
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.18
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.15
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.15
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.1
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.06
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.06
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.03
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.02
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.02
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.01
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.01
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.01
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.0
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.99
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	97.99
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.99
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.98
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.96
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.93
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.93
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.92
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.91
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.9
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.87
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.86
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.85
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.83
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.83
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.83
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.79
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.78
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	97.76
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.74
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.72
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.69
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.69
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.69
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.68
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.68
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.65
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.63
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.62
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.61
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.61
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.57
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.56
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.55
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.55
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.54
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.52
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.5
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.48
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.45
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.32
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.26
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.13
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.95
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.83
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.77
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.69
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	96.34
3khk_A	544	Type I restriction-modification system methylation	96.22
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.15
3lkd_A	542	Type I restriction-modification system methyltrans	96.09
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	96.01
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	95.99
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	95.89
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.87
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.78
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	95.66
3cvo_A	202	Methyltransferase-like protein of unknown functio;	95.56
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.27
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	95.25
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.2
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	94.59
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	94.54
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.46
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	93.27
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	93.2
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	93.0
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	89.97
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	89.09
2oo3_A	283	Protein involved in catabolism of external DNA; st	87.18
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	87.17
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	86.87
3ufb_A	530	Type I restriction-modification system methyltran	86.06
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	85.68
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	84.76
1y0u_A	96	Arsenical resistance operon repressor, putative; s	84.74
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	83.29
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	82.43
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	81.89
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	81.76

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=7.1e-34  Score=241.20  Aligned_cols=194  Identities=21%  Similarity=0.252  Sum_probs=165.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCC----CCCCcee
Q 046346           13 LEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNN----DEEQGYV   73 (209)
Q Consensus        13 ~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e----~~~~~y~   73 (209)
                      .++...|.+++.||+.+++|++|++|||||+|.+.++|+|++|||+               |++.|+++    ...+.|+
T Consensus         6 ~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~   85 (353)
T 4a6d_A            6 DQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGGKAFYR   85 (353)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCccceee
Confidence            3778889999999999999999999999999987657999999999               67899842    3456899


Q ss_pred             cCHhhh-hhhcCCCcc----------------cchhhhhhcCCCCCccc----------cccCCCcHHHHHHHHHHHhhh
Q 046346           74 LTNASK-LLLKDNPLS----------------QQLRSWFQNDDPTPFGT----------EYDGDEPKLNNFFNEAMASDA  126 (209)
Q Consensus        74 ~t~~s~-~l~~~~~~~----------------~~l~~~l~~~~~~~f~~----------~~~~~~~~~~~~f~~~m~~~~  126 (209)
                      +|+.++ +|..+++.+                .+|.+++++++ ++|..          +++.++|+....|+++|...+
T Consensus        86 ~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~  164 (353)
T 4a6d_A           86 NTELSSDYLTTVSPTSQCSMLKYMGRTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVW  164 (353)
T ss_dssp             ECHHHHHHHSTTSTTCCHHHHHHHHHTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTH
T ss_pred             CCHHHHHHhhcCCchHHHHHHHHhCHHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            999986 566666543                56788888876 33321          455788999999999999988


Q ss_pred             HhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc-----CCCCeEEEEccCCCC-C
Q 046346          127 RLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-----DLVNLKYVGGDMFKA-I  200 (209)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-----~~~ri~~~~gD~~~~-~  200 (209)
                      ....+.+++.++  |++..+|||||||+|.++.+++++||+++++++|+|+|++.|++     ..+||+|++||||++ .
T Consensus       165 ~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~  242 (353)
T 4a6d_A          165 SVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL  242 (353)
T ss_dssp             HHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCC
T ss_pred             HHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCC
Confidence            888888999999  88899999999999999999999999999999999999998875     368999999999985 5


Q ss_pred             CCCcEEEeC
Q 046346          201 SPADAVVLK  209 (209)
Q Consensus       201 p~~D~~~l~  209 (209)
                      |.+|+|+++
T Consensus       243 ~~~D~~~~~  251 (353)
T 4a6d_A          243 PEADLYILA  251 (353)
T ss_dssp             CCCSEEEEE
T ss_pred             CCceEEEee
Confidence            669999985

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.97  E-value=1.2e-30  Score=220.71  Aligned_cols=196  Identities=21%  Similarity=0.382  Sum_probs=168.4

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCcee
Q 046346            9 DTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQGYV   73 (209)
Q Consensus         9 ~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~y~   73 (209)
                      +....++...+++++.|++.+++|++|+++||||+|.+  +|+|++|||+               |++.|+++..+++|+
T Consensus        16 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~~~~~y~   93 (348)
T 3lst_A           16 DMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGTDADALRRVLRLLAVRDVVRESDGRFA   93 (348)
T ss_dssp             CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEecCCEEe
Confidence            34566788999999999999999999999999999985  7999999999               788999555789999


Q ss_pred             cCHhhhhhhcCCCcc-----------------cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHHhhhHhh
Q 046346           74 LTNASKLLLKDNPLS-----------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLA  129 (209)
Q Consensus        74 ~t~~s~~l~~~~~~~-----------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~~~~~~~  129 (209)
                      +|+.++.|+++++.+                 .+|++++++|. ++|..       +|+.++|+..+.|.++|...+...
T Consensus        94 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~  172 (348)
T 3lst_A           94 LTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAE  172 (348)
T ss_dssp             ECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhh
Confidence            999999887766532                 46778888775 45432       677889999999999999988888


Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcc----cCCCCeEEEEccCCCCCCCCcE
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLE----SDLVNLKYVGGDMFKAISPADA  205 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~----~~~~ri~~~~gD~~~~~p~~D~  205 (209)
                      .+.+++.++  +++..+|||||||+|.++..+++++|+++++++|+|+++..++    ...+||+++.+|+++++|.+|+
T Consensus       173 ~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~  250 (348)
T 3lst_A          173 HLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADV  250 (348)
T ss_dssp             HHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSE
T ss_pred             HHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcE
Confidence            888899998  7888999999999999999999999999999999998887332    1457999999999988889999


Q ss_pred             EEeC
Q 046346          206 VVLK  209 (209)
Q Consensus       206 ~~l~  209 (209)
                      |+++
T Consensus       251 v~~~  254 (348)
T 3lst_A          251 HVLK  254 (348)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9873

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.97  E-value=1.2e-30  Score=222.29  Aligned_cols=196  Identities=32%  Similarity=0.547  Sum_probs=166.2

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCC-CCCCHHHHHH--------------------HHhCCCCCCC-
Q 046346           11 EPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHG-KPMTLNELQK--------------------LVSSGNNNDE-   68 (209)
Q Consensus        11 ~~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g-~~~t~~eLA~--------------------L~~~g~~e~~-   68 (209)
                      +..++...+++++++++.+++|++|+++||||+|...| +|+|++|||+                    |++.|+++.. 
T Consensus        16 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~   95 (364)
T 3p9c_A           16 ADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLV   95 (364)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEec
Confidence            46677889999999999999999999999999999864 6999999997                    4667774322 


Q ss_pred             --------CCceecCHhhhhhhcCC-Ccc-----------------cchhhhhhcCCCCCccc-------cccCCCcHHH
Q 046346           69 --------EQGYVLTNASKLLLKDN-PLS-----------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLN  115 (209)
Q Consensus        69 --------~~~y~~t~~s~~l~~~~-~~~-----------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~  115 (209)
                              +++|.+|+.++.|+.++ +.+                 .+|.+++++|+ ++|+.       +|+..+|+..
T Consensus        96 ~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~  174 (364)
T 3p9c_A           96 EEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFN  174 (364)
T ss_dssp             EECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHH
T ss_pred             cccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHH
Confidence                    47899999999887654 322                 56778888876 55543       6778899999


Q ss_pred             HHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEcc
Q 046346          116 NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGD  195 (209)
Q Consensus       116 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD  195 (209)
                      +.|+++|...+....+.+++.++. +++..+|||||||+|.++..+++++|+++++++|+|++++.|+ ..+||+|+.+|
T Consensus       175 ~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~~~~D  252 (364)
T 3p9c_A          175 RVFNEGMKNHSIIITKKLLELYHG-FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAP-QFPGVTHVGGD  252 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEECC
T ss_pred             HHHHHHHHHhhHHHHHHHHHhccc-ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhh-hcCCeEEEeCC
Confidence            999999998888777888888863 6778999999999999999999999999999999999999988 45799999999


Q ss_pred             CCCCCCCCcEEEeC
Q 046346          196 MFKAISPADAVVLK  209 (209)
Q Consensus       196 ~~~~~p~~D~~~l~  209 (209)
                      |++++|..|+|+++
T Consensus       253 ~~~~~p~~D~v~~~  266 (364)
T 3p9c_A          253 MFKEVPSGDTILMK  266 (364)
T ss_dssp             TTTCCCCCSEEEEE
T ss_pred             cCCCCCCCCEEEeh
Confidence            99988888999874

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.97  E-value=1.9e-30  Score=219.68  Aligned_cols=205  Identities=47%  Similarity=0.826  Sum_probs=170.5

Q ss_pred             CCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH------------------HHhCC
Q 046346            2 NLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK------------------LVSSG   63 (209)
Q Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~------------------L~~~g   63 (209)
                      |-|....+.+++++...+++++.+++.+.+|++++++|||++|...|+|.|++|||+                  |++.|
T Consensus         3 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~g   82 (352)
T 1fp2_A            3 SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNG   82 (352)
T ss_dssp             -----CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTT
T ss_pred             ccccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCC
Confidence            567888889999999999999999999999999999999999987545999999998                  67889


Q ss_pred             CCC-C--CCCceecCHhhhhhhcCCCcc-----------------cchhhhhh-cCCCCCccc-------cccCCCcHHH
Q 046346           64 NNN-D--EEQGYVLTNASKLLLKDNPLS-----------------QQLRSWFQ-NDDPTPFGT-------EYDGDEPKLN  115 (209)
Q Consensus        64 ~~e-~--~~~~y~~t~~s~~l~~~~~~~-----------------~~l~~~l~-~~~~~~f~~-------~~~~~~~~~~  115 (209)
                      +++ .  ++++|++|+.++.|+.+++.+                 .+|+++++ +|. ++|..       +|+.++|+..
T Consensus        83 ll~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~  161 (352)
T 1fp2_A           83 FFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYN  161 (352)
T ss_dssp             SEEEEESSSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHH
T ss_pred             eEEEecCCCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHH
Confidence            854 3  368999999999888776532                 57788888 554 55532       5667889999


Q ss_pred             HHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEcc
Q 046346          116 NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGD  195 (209)
Q Consensus       116 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD  195 (209)
                      +.|+++|...+....+. ++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.|++ ..+++++.+|
T Consensus       162 ~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d  239 (352)
T 1fp2_A          162 TSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-SNNLTYVGGD  239 (352)
T ss_dssp             HHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-BTTEEEEECC
T ss_pred             HHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-CCCcEEEecc
Confidence            99999999887766666 777732377889999999999999999999999999999999999999885 3569999999


Q ss_pred             CCCCCCCCcEEEeC
Q 046346          196 MFKAISPADAVVLK  209 (209)
Q Consensus       196 ~~~~~p~~D~~~l~  209 (209)
                      +++++|.+|+|+++
T Consensus       240 ~~~~~p~~D~v~~~  253 (352)
T 1fp2_A          240 MFTSIPNADAVLLK  253 (352)
T ss_dssp             TTTCCCCCSEEEEE
T ss_pred             ccCCCCCccEEEee
Confidence            99988889999874

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.97  E-value=8.2e-30  Score=217.27  Aligned_cols=193  Identities=24%  Similarity=0.409  Sum_probs=166.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCC-CCCCc-eec
Q 046346           12 PLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNN-DEEQG-YVL   74 (209)
Q Consensus        12 ~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e-~~~~~-y~~   74 (209)
                      ..+...++++++.+++.+++|++++++||||+|..  +|+|++|||+               |++.|+++ ..+++ |.+
T Consensus        35 ~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~  112 (369)
T 3gwz_A           35 RAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQ  112 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence            34667889999999999999999999999999985  7999999999               78899854 46788 999


Q ss_pred             CHhhhhhhcCCCcc-----------------cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHHhhhHhhH
Q 046346           75 TNASKLLLKDNPLS-----------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLAT  130 (209)
Q Consensus        75 t~~s~~l~~~~~~~-----------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~~~~~~~~  130 (209)
                      |+.++.|+++++.+                 .+|+++++++. ++|..       +|+.++|+..+.|.++|...+....
T Consensus       113 t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~  191 (369)
T 3gwz_A          113 NALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEA  191 (369)
T ss_dssp             CHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhH
Confidence            99998887766532                 45677788775 44432       5667889999999999998888778


Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCCCCCC-C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAISP-A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~~~p~-~  203 (209)
                      +.+++.++  +.+..+|||||||+|.++..+++++|+++++++|+|.+++.|++      ..+||+|+.+|+++++|. +
T Consensus       192 ~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~  269 (369)
T 3gwz_A          192 GQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGA  269 (369)
T ss_dssp             HHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSC
T ss_pred             HHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCc
Confidence            88889888  78889999999999999999999999999999999999998875      367999999999998995 9


Q ss_pred             cEEEeC
Q 046346          204 DAVVLK  209 (209)
Q Consensus       204 D~~~l~  209 (209)
                      |+|+++
T Consensus       270 D~v~~~  275 (369)
T 3gwz_A          270 DVYLIK  275 (369)
T ss_dssp             SEEEEE
T ss_pred             eEEEhh
Confidence            999874

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.97  E-value=4.9e-30  Score=217.66  Aligned_cols=202  Identities=48%  Similarity=0.828  Sum_probs=169.3

Q ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH------------------HHhCCCCC-
Q 046346            6 GERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK------------------LVSSGNNN-   66 (209)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~------------------L~~~g~~e-   66 (209)
                      |..+.+++++...+++++.+++.+.+|++++++|||++|...|+|+|++|||+                  |++.|+++ 
T Consensus         1 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~   80 (358)
T 1zg3_A            1 GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAK   80 (358)
T ss_dssp             CTTTSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEE
T ss_pred             CCchHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEE
Confidence            34557889999999999999999999999999999999997545999999998                  67889843 


Q ss_pred             C-----C-----CCceecCHhhhhhhcCCCcc-----------------cchhhhhhcCC-CCCccc-------cccCCC
Q 046346           67 D-----E-----EQGYVLTNASKLLLKDNPLS-----------------QQLRSWFQNDD-PTPFGT-------EYDGDE  111 (209)
Q Consensus        67 ~-----~-----~~~y~~t~~s~~l~~~~~~~-----------------~~l~~~l~~~~-~~~f~~-------~~~~~~  111 (209)
                      .     .     +++|++|+.++.|+++++.+                 .+|+++++++. .++|+.       +|+.++
T Consensus        81 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~  160 (358)
T 1zg3_A           81 TIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKD  160 (358)
T ss_dssp             EEECCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSG
T ss_pred             ecccccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcC
Confidence            3     2     47999999999888776532                 57888898873 245542       566788


Q ss_pred             cHHHH--HHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCe
Q 046346          112 PKLNN--FFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNL  189 (209)
Q Consensus       112 ~~~~~--~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri  189 (209)
                      |+..+  .|+++|...+.... .+++.+++.+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..+|
T Consensus       161 p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v  238 (358)
T 1zg3_A          161 SESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENL  238 (358)
T ss_dssp             GGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-CSSE
T ss_pred             hhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-CCCc
Confidence            99989  99999998777655 77888832377889999999999999999999999999999999999998885 4569


Q ss_pred             EEEEccCCCCCCCCcEEEeC
Q 046346          190 KYVGGDMFKAISPADAVVLK  209 (209)
Q Consensus       190 ~~~~gD~~~~~p~~D~~~l~  209 (209)
                      +++.+|+++++|.+|+|+++
T Consensus       239 ~~~~~d~~~~~~~~D~v~~~  258 (358)
T 1zg3_A          239 NFVGGDMFKSIPSADAVLLK  258 (358)
T ss_dssp             EEEECCTTTCCCCCSEEEEE
T ss_pred             EEEeCccCCCCCCceEEEEc
Confidence            99999999988889999874

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.97  E-value=5.8e-30  Score=218.21  Aligned_cols=196  Identities=30%  Similarity=0.529  Sum_probs=165.2

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhC---CCCCCHHHHHH-------------------HHhCCCCCC-
Q 046346           11 EPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKH---GKPMTLNELQK-------------------LVSSGNNND-   67 (209)
Q Consensus        11 ~~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~---g~~~t~~eLA~-------------------L~~~g~~e~-   67 (209)
                      +..++...+++++.+++.+++|++|+++||||+|...   ++|+|++|||+                   |++.|+++. 
T Consensus        17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~   96 (368)
T 3reo_A           17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT   96 (368)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence            5677889999999999999999999999999999873   25799999997                   567888432 


Q ss_pred             ----C----CCceecCHhhhhhhcCC-Ccc-----------------cchhhhhhcCCCCCccc-------cccCCCcHH
Q 046346           68 ----E----EQGYVLTNASKLLLKDN-PLS-----------------QQLRSWFQNDDPTPFGT-------EYDGDEPKL  114 (209)
Q Consensus        68 ----~----~~~y~~t~~s~~l~~~~-~~~-----------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~  114 (209)
                          .    +++|++|+.++.|+.+. +.+                 .+|.+++++|. ++|+.       +|+..+|+.
T Consensus        97 ~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~  175 (368)
T 3reo_A           97 LRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRI  175 (368)
T ss_dssp             EEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHH
T ss_pred             cccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHH
Confidence                1    36899999999887543 332                 56778888875 45542       667789999


Q ss_pred             HHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEc
Q 046346          115 NNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGG  194 (209)
Q Consensus       115 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~g  194 (209)
                      .+.|+++|...+....+.+++.++. +++..+|||||||+|.++..+++++|+++++++|+|++++.++ ..+||+|+.+
T Consensus       176 ~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~~~~  253 (368)
T 3reo_A          176 NKVFNKGMSSNSTITMKKILEMYNG-FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAP-AFSGVEHLGG  253 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEEC
T ss_pred             HHHHHHHHHhhhhhHHHHHHHhccc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhh-hcCCCEEEec
Confidence            9999999998887777888888762 6778999999999999999999999999999999999999888 4579999999


Q ss_pred             cCCCCCCCCcEEEeC
Q 046346          195 DMFKAISPADAVVLK  209 (209)
Q Consensus       195 D~~~~~p~~D~~~l~  209 (209)
                      |+++++|..|+|+++
T Consensus       254 d~~~~~p~~D~v~~~  268 (368)
T 3reo_A          254 DMFDGVPKGDAIFIK  268 (368)
T ss_dssp             CTTTCCCCCSEEEEE
T ss_pred             CCCCCCCCCCEEEEe
Confidence            999988888999874

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.97  E-value=1.2e-29  Score=215.73  Aligned_cols=204  Identities=22%  Similarity=0.261  Sum_probs=160.3

Q ss_pred             CCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCC
Q 046346            1 MNLIDGERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNN   65 (209)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~   65 (209)
                      |+.---+.+.+++++...+++++.|++.+++|++++++||||+|+..++|+|++|||+               |++.|++
T Consensus         1 ~~~~~~~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l   80 (363)
T 3dp7_A            1 MSLRYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTI   80 (363)
T ss_dssp             ----CCCSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSE
T ss_pred             CCcccccCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCe
Confidence            3333345677899999999999999999999999999999999997457999999999               6889997


Q ss_pred             CCCCCceecCHhhhhhhcCCCcc--------------cchhhhhhcCCCC---Cccc-----cccCCCcHHHHH----HH
Q 046346           66 NDEEQGYVLTNASKLLLKDNPLS--------------QQLRSWFQNDDPT---PFGT-----EYDGDEPKLNNF----FN  119 (209)
Q Consensus        66 e~~~~~y~~t~~s~~l~~~~~~~--------------~~l~~~l~~~~~~---~f~~-----~~~~~~~~~~~~----f~  119 (209)
                      +..+++|++|+.+++|+++++.+              .+|+++++++.+.   .|+.     +++.++|+..+.    |+
T Consensus        81 ~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~  160 (363)
T 3dp7_A           81 LLEEDRYVLAKAGWFLLNDKMARVNMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFD  160 (363)
T ss_dssp             EEETTEEEECHHHHHHHHCHHHHHHHHHHHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHH
T ss_pred             EecCCEEecccchHHhhCCCcccchheeecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHH
Confidence            66689999999999888765432              6889999987632   1221     556677776653    55


Q ss_pred             HHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEE
Q 046346          120 EAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVG  193 (209)
Q Consensus       120 ~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~  193 (209)
                      .+|....   ...+++.+.  ..+..+|||||||+|.++..+++++|+++++++|+|.+++.|++      ..+||+++.
T Consensus       161 ~~~~~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~  235 (363)
T 3dp7_A          161 HFYSDQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHG  235 (363)
T ss_dssp             HHTTCCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEE
T ss_pred             HHhhhhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEE
Confidence            5554322   233444443  35779999999999999999999999999999999999998875      236899999


Q ss_pred             ccCCCC---CCC-CcEEEeC
Q 046346          194 GDMFKA---ISP-ADAVVLK  209 (209)
Q Consensus       194 gD~~~~---~p~-~D~~~l~  209 (209)
                      +|++++   +|. +|+|+++
T Consensus       236 ~d~~~~~~~~p~~~D~v~~~  255 (363)
T 3dp7_A          236 ANLLDRDVPFPTGFDAVWMS  255 (363)
T ss_dssp             CCCCSSSCCCCCCCSEEEEE
T ss_pred             ccccccCCCCCCCcCEEEEe
Confidence            999984   675 9999874

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.97  E-value=2.2e-30  Score=217.51  Aligned_cols=191  Identities=24%  Similarity=0.307  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCC-CCCCceecCHh
Q 046346           14 EAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNN-DEEQGYVLTNA   77 (209)
Q Consensus        14 ~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e-~~~~~y~~t~~   77 (209)
                      .++..+++++.|++.+++|++|+++||||+|..  +|+|++|||+               |++.|+++ .++++|.+|+.
T Consensus         4 ~~~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~   81 (332)
T 3i53_A            4 RAAHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEF   81 (332)
T ss_dssp             -CCSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECTT
T ss_pred             CcHHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcCHh
Confidence            345678999999999999999999999999985  7999999999               68899854 46799999999


Q ss_pred             hhhhhcCCCcc------------------cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHHhhhHhhHHH
Q 046346           78 SKLLLKDNPLS------------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSV  132 (209)
Q Consensus        78 s~~l~~~~~~~------------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~~~~~~~~~~  132 (209)
                      ++.|+.+++.+                  .+|+++++++. ++|..       +|+.++|+..+.|.++|...+....+.
T Consensus        82 s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~  160 (332)
T 3i53_A           82 GEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTG  160 (332)
T ss_dssp             GGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHH
Confidence            98887665532                  34566777775 45532       556678999999999999887766677


Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCCCCCC-CcE
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAISP-ADA  205 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~~~p~-~D~  205 (209)
                      +++.++  +++..+|||||||+|.++..+++++|+++++++|+|.+++.|++      ..+||+|+.+|+++++|. +|+
T Consensus       161 ~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~  238 (332)
T 3i53_A          161 IAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGG  238 (332)
T ss_dssp             GGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSE
T ss_pred             HHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcE
Confidence            777777  77789999999999999999999999999999999999998874      358999999999998994 999


Q ss_pred             EEeC
Q 046346          206 VVLK  209 (209)
Q Consensus       206 ~~l~  209 (209)
                      |+++
T Consensus       239 v~~~  242 (332)
T 3i53_A          239 YVLS  242 (332)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9874

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.96  E-value=9.8e-29  Score=207.44  Aligned_cols=188  Identities=26%  Similarity=0.295  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCC-CCCCceecCHh
Q 046346           14 EAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNN-DEEQGYVLTNA   77 (209)
Q Consensus        14 ~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e-~~~~~y~~t~~   77 (209)
                      .++..+++++.+++.+.+|++++++|||++|..  +|.|++|||+               |++.|+++ .+++.|.+|+.
T Consensus         7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~   84 (334)
T 2ip2_A            7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANTPT   84 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEecCHH
Confidence            677999999999999999999999999999975  7999999998               78899854 45689999999


Q ss_pred             hhhhhcCCCcc----------------cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHHhhhHhhHHHHH
Q 046346           78 SKLLLKDNPLS----------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMI  134 (209)
Q Consensus        78 s~~l~~~~~~~----------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~~~~~~~~~~~~  134 (209)
                      ++.|+ +++.+                .+|+++++++. ++|..       +|+.++|+..+.|+++| ..+....+.++
T Consensus        85 s~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~  161 (334)
T 2ip2_A           85 SHLLR-DVEGSFRDMVLFYGEEFHAAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIP  161 (334)
T ss_dssp             HHTTS-SSTTCSHHHHHHHTTHHHHHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHH
T ss_pred             HHHHh-CCCccHHHHHHHhcCchhhHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHH
Confidence            98887 65432                46778888775 45532       55667899999999999 87777778888


Q ss_pred             HhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCCCCCC-CcEEE
Q 046346          135 QKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAISP-ADAVV  207 (209)
Q Consensus       135 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~~~p~-~D~~~  207 (209)
                      +.++  +.+ .+|||||||+|.++..+++++|+.+++++|+|.+++.|++      ..+||+++.+|+++++|. +|+|+
T Consensus       162 ~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~  238 (334)
T 2ip2_A          162 RLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYL  238 (334)
T ss_dssp             HHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEE
T ss_pred             HhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEE
Confidence            8887  677 9999999999999999999999999999999989888775      257999999999998887 99998


Q ss_pred             eC
Q 046346          208 LK  209 (209)
Q Consensus       208 l~  209 (209)
                      ++
T Consensus       239 ~~  240 (334)
T 2ip2_A          239 LS  240 (334)
T ss_dssp             EE
T ss_pred             Ec
Confidence            63

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.96  E-value=4.7e-28  Score=204.66  Aligned_cols=195  Identities=17%  Similarity=0.253  Sum_probs=160.1

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCcee
Q 046346            9 DTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQGYV   73 (209)
Q Consensus         9 ~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~y~   73 (209)
                      +.+.++.+..+++++.+++.+.+|++++++|||++|.   +|+|++|||+               |++.|+++..+++|.
T Consensus        18 ~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~~~y~   94 (352)
T 3mcz_A           18 DKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGMVEGKAAILLHALAALGLLTKEGDAFR   94 (352)
T ss_dssp             SCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecCCeee
Confidence            4444555566999999999999999999999999996   3999999998               788999665568999


Q ss_pred             cCHhhh-hhhcCCCcc---------------cchhhhhhcCCCCCccc-cccCCCcHHHHHHHHHHHhhhHhhHHHHHHh
Q 046346           74 LTNASK-LLLKDNPLS---------------QQLRSWFQNDDPTPFGT-EYDGDEPKLNNFFNEAMASDARLATSVMIQK  136 (209)
Q Consensus        74 ~t~~s~-~l~~~~~~~---------------~~l~~~l~~~~~~~f~~-~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~  136 (209)
                      +|+.++ ++.++++.+               .++++++++|.+.+|+. .++..+|+....|.++|...... ...+++.
T Consensus        95 ~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~  173 (352)
T 3mcz_A           95 NTALTERYLTTTSADYIGPIVEHQYLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQP-MVDVVSE  173 (352)
T ss_dssp             ECHHHHHHHSTTCTTCCHHHHHHHHTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred             cCHHHHhhccCCChhhHHHHHHHhHHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhh-HHHHHHh
Confidence            999997 555555543               57888999887555554 44567899999999999874332 2367888


Q ss_pred             ccccccC-CCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCCC---CCC-CcE
Q 046346          137 CKNVFEG-LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKA---ISP-ADA  205 (209)
Q Consensus       137 ~~~~~~~-~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~~---~p~-~D~  205 (209)
                      ++  +.+ ..+|||||||+|.++..+++++|+++++++|+|++++.+++      ..+||+++.+|+++.   .|. +|+
T Consensus       174 ~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~  251 (352)
T 3mcz_A          174 LG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADV  251 (352)
T ss_dssp             CG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEE
T ss_pred             CC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccE
Confidence            88  666 89999999999999999999999999999999999988774      346899999999985   565 999


Q ss_pred             EEeC
Q 046346          206 VVLK  209 (209)
Q Consensus       206 ~~l~  209 (209)
                      |+++
T Consensus       252 v~~~  255 (352)
T 3mcz_A          252 VMLN  255 (352)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9873

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.96  E-value=7e-28  Score=205.44  Aligned_cols=197  Identities=30%  Similarity=0.485  Sum_probs=160.5

Q ss_pred             CccHHHHHHH--HHHHHHHHHHHHHHHHHcCchhHhhhCCCC---CCHHHHHH---------------------HHhCCC
Q 046346           11 EPLEAQIHVW--NHIFNFINSMTLKCSIQLGIPDIINKHGKP---MTLNELQK---------------------LVSSGN   64 (209)
Q Consensus        11 ~~~~~~~~l~--~~~~g~~~~~~l~~a~~lglfd~L~~~g~~---~t~~eLA~---------------------L~~~g~   64 (209)
                      +..++...++  +++.+++.+.+|++++++|||++|...|+|   +|++|||+                     |++.|+
T Consensus        18 ~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gl   97 (372)
T 1fp1_D           18 EQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSV   97 (372)
T ss_dssp             -CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTS
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCc
Confidence            5677888888  999999999999999999999999974226   99999985                     466788


Q ss_pred             CCCC---------CCceecCHhhhhhhcCCC-cc-----------------cchhhhhhcCCCCCccc-------cccCC
Q 046346           65 NNDE---------EQGYVLTNASKLLLKDNP-LS-----------------QQLRSWFQNDDPTPFGT-------EYDGD  110 (209)
Q Consensus        65 ~e~~---------~~~y~~t~~s~~l~~~~~-~~-----------------~~l~~~l~~~~~~~f~~-------~~~~~  110 (209)
                      ++..         +++|++|+.++.|+.+++ .+                 .+|++++++++.++|+.       +|+.+
T Consensus        98 l~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~  177 (372)
T 1fp1_D           98 LTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGK  177 (372)
T ss_dssp             EEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSS
T ss_pred             eEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHh
Confidence            4322         359999999998887755 22                 47788898872255542       66778


Q ss_pred             CcHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeE
Q 046346          111 EPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLK  190 (209)
Q Consensus       111 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~  190 (209)
                      +|+..+.|+++|...+....+.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.|++ .++|+
T Consensus       178 ~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-~~~v~  255 (372)
T 1fp1_D          178 DKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP-LSGIE  255 (372)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-CTTEE
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh-cCCCE
Confidence            9999999999999888777788888875 266789999999999999999999999999999999999998884 46899


Q ss_pred             EEEccCCCCCCCCcEEEeC
Q 046346          191 YVGGDMFKAISPADAVVLK  209 (209)
Q Consensus       191 ~~~gD~~~~~p~~D~~~l~  209 (209)
                      ++.+|+++++|.+|+|+++
T Consensus       256 ~~~~d~~~~~~~~D~v~~~  274 (372)
T 1fp1_D          256 HVGGDMFASVPQGDAMILK  274 (372)
T ss_dssp             EEECCTTTCCCCEEEEEEE
T ss_pred             EEeCCcccCCCCCCEEEEe
Confidence            9999999988889999863

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.95  E-value=2.7e-27  Score=200.79  Aligned_cols=194  Identities=22%  Similarity=0.368  Sum_probs=164.8

Q ss_pred             CCCCccHHHHHHHHHHH-HHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCc
Q 046346            8 RDTEPLEAQIHVWNHIF-NFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQG   71 (209)
Q Consensus         8 ~~~~~~~~~~~l~~~~~-g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~   71 (209)
                      .+.++.++..++++++. +++.+.+|++++++|||++|..  +|.|++|||+               |++.|+++..+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~  100 (359)
T 1x19_A           23 SNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGK  100 (359)
T ss_dssp             CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred             CccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeCCe
Confidence            34567788899999986 8999999999999999999986  7999999998               7889996655679


Q ss_pred             eecCHh-hhhhhcCCC---cc----------------cchhhhhhcCCCCCccccccCCCcH---HHHHHHHHHHhhhH-
Q 046346           72 YVLTNA-SKLLLKDNP---LS----------------QQLRSWFQNDDPTPFGTEYDGDEPK---LNNFFNEAMASDAR-  127 (209)
Q Consensus        72 y~~t~~-s~~l~~~~~---~~----------------~~l~~~l~~~~~~~f~~~~~~~~~~---~~~~f~~~m~~~~~-  127 (209)
                      |++|+. +.+|+.+++   .+                .+|+++++++.  +|  +|+..+|+   ..+.|..+|...+. 
T Consensus       101 y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~--~~--~~~~~~p~~~~~~~~f~~~m~~~~~~  176 (359)
T 1x19_A          101 WSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQK--NF--KGQVPYPPVTREDNLYFEEIHRSNAK  176 (359)
T ss_dssp             EEECHHHHHHSSSSCSBTTBCCHHHHHHHHHHHHHTGGGHHHHHTTSC--CC--CCSSCSSCCSHHHHHHHHHHHHTTCH
T ss_pred             EecCHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC--cccccCchhhHHHHHHHHHHHHhccc
Confidence            999997 467777655   22                57788888876  36  56778888   89999999998877 


Q ss_pred             hhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CC
Q 046346          128 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AI  200 (209)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~  200 (209)
                      ...+.+++.++  +.+..+|||||||+|.++..+++++|+++++++|+|.+++.|++      ..+||+++.+|+++ ++
T Consensus       177 ~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  254 (359)
T 1x19_A          177 FAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESY  254 (359)
T ss_dssp             HHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC
T ss_pred             hhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCC
Confidence            77788888888  77889999999999999999999999999999999999988874      35689999999998 56


Q ss_pred             CCCcEEEeC
Q 046346          201 SPADAVVLK  209 (209)
Q Consensus       201 p~~D~~~l~  209 (209)
                      |.+|+|+++
T Consensus       255 ~~~D~v~~~  263 (359)
T 1x19_A          255 PEADAVLFC  263 (359)
T ss_dssp             CCCSEEEEE
T ss_pred             CCCCEEEEe
Confidence            668999863

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.94  E-value=1.2e-26  Score=194.40  Aligned_cols=190  Identities=18%  Similarity=0.209  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCceecCHhh-h
Q 046346           16 QIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQGYVLTNAS-K   79 (209)
Q Consensus        16 ~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~y~~t~~s-~   79 (209)
                      +..+++++.+++.+.+|++++++|||++|.+  +|.|++|||+               |++.|+++..+++|++|+.+ +
T Consensus         7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~~~~y~~t~~~~~   84 (335)
T 2r3s_A            7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQAEGYRLTSDSAM   84 (335)
T ss_dssp             SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEecCCEEecCHHHHH
Confidence            4789999999999999999999999999986  7999999998               78899976678999999999 6


Q ss_pred             hhhcCCCcc-----------------cchhhhhhcCCCCCccc-cccCCCcHHHHHHHHHHHhhhHhhHHHHHHhccccc
Q 046346           80 LLLKDNPLS-----------------QQLRSWFQNDDPTPFGT-EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVF  141 (209)
Q Consensus        80 ~l~~~~~~~-----------------~~l~~~l~~~~~~~f~~-~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~  141 (209)
                      +|..+++.+                 .+|+++++++. ++|.. +++.++++....|.+.|..........+++.+++.+
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (335)
T 2r3s_A           85 FLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENK  163 (335)
T ss_dssp             HTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHTC--
T ss_pred             HhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhccccc
Confidence            777665532                 46777888775 44431 456678888899999998877766777888887211


Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      .+..+|||||||+|.++..+++++|+.+++++|++.+++.|++      ..+||+++.+|+++ ++|. +|+|++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEE
Confidence            7789999999999999999999999999999999988888775      24689999999998 6776 999986

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.94  E-value=1.1e-26  Score=197.64  Aligned_cols=199  Identities=24%  Similarity=0.287  Sum_probs=161.5

Q ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCC-CCC
Q 046346            6 GERDTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNN-DEE   69 (209)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e-~~~   69 (209)
                      |+......+....+++++.+++.+.+|++++++|||++|..  +|.|++|||+               |++.|+++ ..+
T Consensus         7 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~   84 (374)
T 1qzz_A            7 GEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEK   84 (374)
T ss_dssp             ---CCCCHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC
T ss_pred             CCCCCCCchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCC
Confidence            44444566777899999999999999999999999999964  7999999999               78899854 366


Q ss_pred             C--ceecCHhhhhhhcCCCcc------------------cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHH
Q 046346           70 Q--GYVLTNASKLLLKDNPLS------------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAM  122 (209)
Q Consensus        70 ~--~y~~t~~s~~l~~~~~~~------------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m  122 (209)
                      +  .|.+|+.++.|+.+++.+                  .+|+++++++. ++|..       ++...+|+....|.++|
T Consensus        85 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~  163 (374)
T 1qzz_A           85 QGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALM  163 (374)
T ss_dssp             -CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTC
T ss_pred             CCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHH
Confidence            7  999999998888766432                  24556677765 44432       34456788889999999


Q ss_pred             HhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccC
Q 046346          123 ASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDM  196 (209)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~  196 (209)
                      ...+....+.+++.++  +.+..+|||||||+|.++..+++++|+++++++|+|.+++.|++      ..+||+++.+|+
T Consensus       164 ~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~  241 (374)
T 1qzz_A          164 SCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDF  241 (374)
T ss_dssp             GGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCC
Confidence            8777666778888887  77789999999999999999999999999999999999988874      245899999999


Q ss_pred             CCCCCC-CcEEEeC
Q 046346          197 FKAISP-ADAVVLK  209 (209)
Q Consensus       197 ~~~~p~-~D~~~l~  209 (209)
                      ++++|. +|+|+++
T Consensus       242 ~~~~~~~~D~v~~~  255 (374)
T 1qzz_A          242 FKPLPVTADVVLLS  255 (374)
T ss_dssp             TSCCSCCEEEEEEE
T ss_pred             CCcCCCCCCEEEEe
Confidence            988887 9999863

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.94  E-value=8.1e-26  Score=191.46  Aligned_cols=188  Identities=24%  Similarity=0.379  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCC-CCCCceecCHhhh
Q 046346           16 QIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNN-DEEQGYVLTNASK   79 (209)
Q Consensus        16 ~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e-~~~~~y~~t~~s~   79 (209)
                      ..++++++.+++.+++|++++++|||++|..  +|.|++|||+               |++.|+++ ..+++|.+|+.++
T Consensus        20 ~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~   97 (360)
T 1tw3_A           20 ALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGE   97 (360)
T ss_dssp             HHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTGG
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeCHHHH
Confidence            4678999999999999999999999999964  7999999998               78899854 4678999999999


Q ss_pred             hhhcCCCcc------------------cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHHhhhHhhHHHHH
Q 046346           80 LLLKDNPLS------------------QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMI  134 (209)
Q Consensus        80 ~l~~~~~~~------------------~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~~~~~~~~~~~~  134 (209)
                      .|+.+++.+                  .++.++++++. ++|..       +++..+|+....|...|...+....+.++
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~  176 (360)
T 1tw3_A           98 LLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPA  176 (360)
T ss_dssp             GGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHH
T ss_pred             HHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHH
Confidence            888776532                  23456666665 34331       44456888889999999887777778888


Q ss_pred             HhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCCCCCC-CcEEE
Q 046346          135 QKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAISP-ADAVV  207 (209)
Q Consensus       135 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~~~p~-~D~~~  207 (209)
                      +.++  +.+..+|||||||+|.++..+++++|+++++++|+|.+++.|++      ..+||+++.+|+++++|. +|+|+
T Consensus       177 ~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~  254 (360)
T 1tw3_A          177 AAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAII  254 (360)
T ss_dssp             HHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEE
T ss_pred             HhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEE
Confidence            8887  77789999999999999999999999999999999999988774      345899999999998887 99998


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       255 ~  255 (360)
T 1tw3_A          255 L  255 (360)
T ss_dssp             E
T ss_pred             E
Confidence            6

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.12  E-value=6.2e-10  Score=90.21  Aligned_cols=98  Identities=17%  Similarity=0.270  Sum_probs=69.6

Q ss_pred             CcHHHHHHHHHHHhhhHh--hHHHHHHhc-cccccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHhhccc
Q 046346          111 EPKLNNFFNEAMASDARL--ATSVMIQKC-KNVFEGLNSLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       111 ~~~~~~~f~~~m~~~~~~--~~~~~~~~~-~~~~~~~~~vlDvGgG~G~~~~~l~~~~--P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      +.+.++.|.+.....-..  ....++..+ .....+..+|||||||+|.++..+++++  |+.+++++|+ |.+++.|++
T Consensus        35 ~~~va~~fdd~i~rsvP~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~  114 (261)
T 4gek_A           35 DERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRR  114 (261)
T ss_dssp             CHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHH
T ss_pred             CcchhhhhhhhHhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHH
Confidence            445667787765532111  111111111 1224567899999999999999999986  6789999999 889998875


Q ss_pred             ------CCCCeEEEEccCCC-CCCCCcEEEe
Q 046346          185 ------DLVNLKYVGGDMFK-AISPADAVVL  208 (209)
Q Consensus       185 ------~~~ri~~~~gD~~~-~~p~~D~~~l  208 (209)
                            ...+|+++.+|+.+ +.+.+|++++
T Consensus       115 ~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~  145 (261)
T 4gek_A          115 HIDAYKAPTPVDVIEGDIRDIAIENASMVVL  145 (261)
T ss_dssp             HHHTSCCSSCEEEEESCTTTCCCCSEEEEEE
T ss_pred             HHHhhccCceEEEeeccccccccccccccee
Confidence                  34689999999987 6666998875

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.01  E-value=3e-10  Score=96.48  Aligned_cols=65  Identities=11%  Similarity=0.125  Sum_probs=55.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-----CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-----PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-----~~D~~~l  208 (209)
                      ...+||||| |+|.++..+++..|+.+++++|+ |.+++.|++     ...||+++.+|+++++|     .+|+|++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~  247 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT  247 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence            458999999 99999999999999999999999 899988875     12389999999988554     2899986

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.93  E-value=7.9e-09  Score=81.40  Aligned_cols=94  Identities=18%  Similarity=0.243  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhhhH---hhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CC
Q 046346          114 LNNFFNEAMASDAR---LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DL  186 (209)
Q Consensus       114 ~~~~f~~~m~~~~~---~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~  186 (209)
                      ....|.........   .....+++.+.. ..+..+|||||||+|.++..+++++|..+++++|+ +.+++.|++   ..
T Consensus        13 ~a~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~   91 (234)
T 3dtn_A           13 VSGKYDEQRRKFIPCFDDFYGVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN   91 (234)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC
T ss_pred             HHHHHHHhHHHhCcCHHHHHHHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC
Confidence            44556555443221   122344444431 34568999999999999999999999999999999 788888775   23


Q ss_pred             CCeEEEEccCCC-CCCC-CcEEEe
Q 046346          187 VNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       187 ~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      .+++++.+|+.+ +.+. +|+|+.
T Consensus        92 ~~~~~~~~d~~~~~~~~~fD~v~~  115 (234)
T 3dtn_A           92 LKVKYIEADYSKYDFEEKYDMVVS  115 (234)
T ss_dssp             TTEEEEESCTTTCCCCSCEEEEEE
T ss_pred             CCEEEEeCchhccCCCCCceEEEE
Confidence            489999999987 4444 999975

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.91  E-value=2.2e-09  Score=85.01  Aligned_cols=67  Identities=7%  Similarity=-0.015  Sum_probs=58.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC---CCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS---PADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p---~~D~~~l  208 (209)
                      ++..+|+|||||+|.+++.+++.+|..+++.+|+ |..++.|++      ..++|++..+|.++++|   .+|++++
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Ivi   90 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITI   90 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEE
Confidence            4567999999999999999999999999999999 777887774      45789999999999776   3898874

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.87  E-value=1.7e-08  Score=77.99  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=62.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC---
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---  201 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p---  201 (209)
                      ..++..++  .....+|||||||+|.++..+++++|..+++++|+ +.+++.|++     ..++++++.+|+.+.++   
T Consensus        30 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  107 (204)
T 3e05_A           30 AVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP  107 (204)
T ss_dssp             HHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred             HHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence            34455555  56678999999999999999999999999999999 788887774     23789999999987443   


Q ss_pred             CCcEEEe
Q 046346          202 PADAVVL  208 (209)
Q Consensus       202 ~~D~~~l  208 (209)
                      .+|++++
T Consensus       108 ~~D~i~~  114 (204)
T 3e05_A          108 DPDRVFI  114 (204)
T ss_dssp             CCSEEEE
T ss_pred             CCCEEEE
Confidence            4999875

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.84  E-value=1.2e-08  Score=81.98  Aligned_cols=94  Identities=16%  Similarity=0.203  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHhh---hHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCC
Q 046346          113 KLNNFFNEAMASD---ARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVN  188 (209)
Q Consensus       113 ~~~~~f~~~m~~~---~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~r  188 (209)
                      .....|...+...   .......+.+.+....++..+|||||||+|.++..++++.+  +++++|+ +.+++.|++...+
T Consensus        17 ~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~   94 (263)
T 3pfg_A           17 EIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPD   94 (263)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCC
Confidence            4556666666521   11223344444433345668999999999999999999965  6889999 8889888865569


Q ss_pred             eEEEEccCCC-CCCC-CcEEEe
Q 046346          189 LKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       189 i~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ++++.+|+.+ +.+. +|+|+.
T Consensus        95 ~~~~~~d~~~~~~~~~fD~v~~  116 (263)
T 3pfg_A           95 AVLHHGDMRDFSLGRRFSAVTC  116 (263)
T ss_dssp             SEEEECCTTTCCCSCCEEEEEE
T ss_pred             CEEEECChHHCCccCCcCEEEE
Confidence            9999999987 4555 999975

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.83  E-value=1e-08  Score=83.99  Aligned_cols=65  Identities=15%  Similarity=0.268  Sum_probs=56.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC-C---cEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP-A---DAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~-~---D~~~l  208 (209)
                      ...+|||||||+|.++..+++. |+.+++++|+ +.+++.|++      ..+|++|+.+|++++++. +   |+|+.
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivs  198 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILS  198 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEE
Confidence            4579999999999999999999 9999999999 788887774      345799999999986654 8   99875

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.83  E-value=5.9e-09  Score=82.80  Aligned_cols=67  Identities=9%  Similarity=-0.060  Sum_probs=57.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC---CCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS---PADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p---~~D~~~l  208 (209)
                      .+..+|+|||||+|.+++.+++.+|..+++..|+ |..++.|++      ..+||++..+|.++.++   .+|++++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivi   96 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITI   96 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEE
Confidence            4568999999999999999999999999999999 778887774      46799999999999654   3898864

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.83  E-value=1.6e-08  Score=78.37  Aligned_cols=90  Identities=20%  Similarity=0.261  Sum_probs=65.5

Q ss_pred             HHHHHHHHHhhhHhh----HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----
Q 046346          115 NNFFNEAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----  184 (209)
Q Consensus       115 ~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----  184 (209)
                      ...|...........    ...+++.++  ..+. +|||||||+|.++..++++ |..+++++|+ +.+++.|++     
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~   89 (219)
T 3dlc_A           14 AKNMDEISKTLFAPIYPIIAENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADA   89 (219)
T ss_dssp             HHHHHHHHHTTTTTHHHHHHHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHhhccccHHHHHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhc
Confidence            455555555433222    233344443  3333 9999999999999999999 8899999999 788887775     


Q ss_pred             -CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          185 -DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       185 -~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                       ..++++++.+|+.+ +++.  +|+|+.
T Consensus        90 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~  117 (219)
T 3dlc_A           90 NLNDRIQIVQGDVHNIPIEDNYADLIVS  117 (219)
T ss_dssp             TCTTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred             cccCceEEEEcCHHHCCCCcccccEEEE
Confidence             24689999999987 6653  899975

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.81  E-value=7.4e-09  Score=82.93  Aligned_cols=67  Identities=10%  Similarity=0.074  Sum_probs=57.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC--C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p--~-~D~~~l  208 (209)
                      .+..+|+|||||+|.+++.+++.+|..+++.+|+ |..++.|++      ..+||++..+|.++.++  . +|++++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivi   96 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVI   96 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEE
Confidence            4568999999999999999999999999999999 778887774      45789999999998654  2 898864

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.81  E-value=2.3e-08  Score=79.68  Aligned_cols=76  Identities=12%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p  201 (209)
                      ...+++.+.  ..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.|++      ..++++++.+|+.+ +.+
T Consensus        25 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  101 (256)
T 1nkv_A           25 YATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN  101 (256)
T ss_dssp             HHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence            344555555  5667899999999999999999998 678999999 788887764      23689999999987 333


Q ss_pred             C-CcEEEe
Q 046346          202 P-ADAVVL  208 (209)
Q Consensus       202 ~-~D~~~l  208 (209)
                      . +|+|+.
T Consensus       102 ~~fD~V~~  109 (256)
T 1nkv_A          102 EKCDVAAC  109 (256)
T ss_dssp             SCEEEEEE
T ss_pred             CCCCEEEE
Confidence            4 899974

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.79  E-value=1.4e-08  Score=79.11  Aligned_cols=75  Identities=17%  Similarity=0.157  Sum_probs=58.7

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------C----CCeEEEEccCCC-C
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------L----VNLKYVGGDMFK-A  199 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~----~ri~~~~gD~~~-~  199 (209)
                      .+.+.+.  ..+..+|||||||+|.++..+++++|..+++++|+ +.+++.|++.      .    .+++++.+|+.. +
T Consensus        20 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (217)
T 3jwh_A           20 GVVAALK--QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD   97 (217)
T ss_dssp             HHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred             HHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence            3344444  34568999999999999999999999999999999 7888877641      1    289999999865 3


Q ss_pred             CC--CCcEEEe
Q 046346          200 IS--PADAVVL  208 (209)
Q Consensus       200 ~p--~~D~~~l  208 (209)
                      .+  .+|+|+.
T Consensus        98 ~~~~~fD~v~~  108 (217)
T 3jwh_A           98 KRFHGYDAATV  108 (217)
T ss_dssp             GGGCSCSEEEE
T ss_pred             ccCCCcCEEee
Confidence            33  3999975

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.79  E-value=2.4e-08  Score=79.80  Aligned_cols=76  Identities=14%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~  202 (209)
                      ..++..++  ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++      ..+|++++.+|+.+.+|.
T Consensus        83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  160 (255)
T 3mb5_A           83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE  160 (255)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred             HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence            44555555  566789999999999999999999 89999999999 788887774      356799999999987764


Q ss_pred             --CcEEEe
Q 046346          203 --ADAVVL  208 (209)
Q Consensus       203 --~D~~~l  208 (209)
                        +|++++
T Consensus       161 ~~~D~v~~  168 (255)
T 3mb5_A          161 ENVDHVIL  168 (255)
T ss_dssp             CSEEEEEE
T ss_pred             CCcCEEEE
Confidence              899875

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.78  E-value=4.3e-08  Score=78.92  Aligned_cols=75  Identities=23%  Similarity=0.240  Sum_probs=60.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~  202 (209)
                      ..+++.++  .....+|||||||+|.++..+++++ ..+++++|+ +.+++.+++      ..++++++.+|+.+ ++|.
T Consensus        51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence            45566665  5677899999999999999999987 689999999 777777664      34689999999987 5553


Q ss_pred             --CcEEEe
Q 046346          203 --ADAVVL  208 (209)
Q Consensus       203 --~D~~~l  208 (209)
                        +|+|+.
T Consensus       128 ~~fD~v~~  135 (273)
T 3bus_A          128 ASFDAVWA  135 (273)
T ss_dssp             TCEEEEEE
T ss_pred             CCccEEEE
Confidence              899974

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.78  E-value=8.5e-09  Score=80.60  Aligned_cols=64  Identities=17%  Similarity=0.237  Sum_probs=54.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ...+|||||||+|.++..+++++|  +++++|+ |.+++.+++    ...+++++.+|+.+ ++|.  +|+++.
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  109 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIF  109 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEE
Confidence            468999999999999999999988  8899999 788887774    24789999999987 5553  899875

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.77  E-value=5.3e-08  Score=75.45  Aligned_cols=75  Identities=15%  Similarity=0.202  Sum_probs=59.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCC-CCeEEEEccCCCCCCC--CcEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDL-VNLKYVGGDMFKAISP--ADAV  206 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~-~ri~~~~gD~~~~~p~--~D~~  206 (209)
                      ..+++.+.. .....+|||||||+|.++..++++  ..+++++|+ +.+++.+++.. .+++++.+|+.+..+.  +|++
T Consensus        35 ~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v  111 (218)
T 3ou2_A           35 PAALERLRA-GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV  111 (218)
T ss_dssp             HHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred             HHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE
Confidence            344454432 445679999999999999999999  568999999 78888887633 7899999999875443  8999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      +.
T Consensus       112 ~~  113 (218)
T 3ou2_A          112 FF  113 (218)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.77  E-value=1.6e-08  Score=78.87  Aligned_cols=76  Identities=14%  Similarity=0.152  Sum_probs=59.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------C----CCeEEEEccCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------L----VNLKYVGGDMFK-  198 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~----~ri~~~~gD~~~-  198 (209)
                      ..+.+.+.  ..+..+|||||||+|.++..+++++|..+++++|+ +.+++.+++.      .    .+++++.+|+.. 
T Consensus        19 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (219)
T 3jwg_A           19 GTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR   96 (219)
T ss_dssp             HHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred             HHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence            33444444  34568999999999999999999999999999999 7888877641      1    289999999965 


Q ss_pred             CCC--CCcEEEe
Q 046346          199 AIS--PADAVVL  208 (209)
Q Consensus       199 ~~p--~~D~~~l  208 (209)
                      +.+  .+|+|+.
T Consensus        97 ~~~~~~fD~V~~  108 (219)
T 3jwg_A           97 DKRFSGYDAATV  108 (219)
T ss_dssp             CGGGTTCSEEEE
T ss_pred             ccccCCCCEEEE
Confidence            332  3999975

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.77  E-value=1.9e-08  Score=80.24  Aligned_cols=75  Identities=16%  Similarity=0.208  Sum_probs=61.7

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      .+++.+.  .....+|||||||+|.++..+++++|..+++++|+ +.+++.+++...+++++.+|+.+..+.  +|+|+.
T Consensus        24 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~  101 (259)
T 2p35_A           24 DLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA  101 (259)
T ss_dssp             HHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred             HHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence            4455554  45678999999999999999999999999999999 788888876567899999999762233  899875

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.76  E-value=1.8e-08  Score=80.73  Aligned_cols=77  Identities=22%  Similarity=0.340  Sum_probs=61.0

Q ss_pred             hhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CC
Q 046346          128 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI  200 (209)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~  200 (209)
                      .....+++.++  .....+|||||||+|.++..++++++  +++++|+ +.+++.|++     ...+++++.+|+.+ ++
T Consensus        24 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~   99 (260)
T 1vl5_A           24 SDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF   99 (260)
T ss_dssp             CCHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS
T ss_pred             HHHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCC
Confidence            34456666665  55778999999999999999999986  8999999 788887764     13589999999987 66


Q ss_pred             CC--CcEEEe
Q 046346          201 SP--ADAVVL  208 (209)
Q Consensus       201 p~--~D~~~l  208 (209)
                      |.  +|+|+.
T Consensus       100 ~~~~fD~V~~  109 (260)
T 1vl5_A          100 TDERFHIVTC  109 (260)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            63  899975

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.76  E-value=3.1e-08  Score=77.23  Aligned_cols=66  Identities=23%  Similarity=0.272  Sum_probs=55.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C--CCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--ISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~--~p~--~D~~~l  208 (209)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.|++     ..++++++.+|+.+ +  ++.  +|++++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            467999999999999999999999999999999 788887764     13689999999986 3  443  899875

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.76  E-value=2.2e-08  Score=82.06  Aligned_cols=44  Identities=14%  Similarity=0.239  Sum_probs=39.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      +....+|||||||+|.++..+++++|..+++++|+ +.+++.|++
T Consensus        44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~   88 (292)
T 3g07_A           44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQ   88 (292)
T ss_dssp             GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHH
T ss_pred             hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            34578999999999999999999999999999999 788887764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.76  E-value=2.7e-08  Score=80.03  Aligned_cols=73  Identities=18%  Similarity=0.218  Sum_probs=59.0

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAV  206 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~  206 (209)
                      ..+++.++  ..+..+|||||||+|.++..+++  |..+++++|+ |.+++.+++.. +++|+.+|+.+ ++|.  +|+|
T Consensus        24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~~fD~v   98 (261)
T 3ege_A           24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLALPDKSVDGV   98 (261)
T ss_dssp             HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-TEEEECCCTTSCCSCTTCBSEE
T ss_pred             HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-CCEEEECchhhCCCCCCCEeEE
Confidence            44455554  45678999999999999999997  7889999999 78888877433 99999999977 5553  9999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      +.
T Consensus        99 ~~  100 (261)
T 3ege_A           99 IS  100 (261)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.76  E-value=3.9e-08  Score=80.27  Aligned_cols=77  Identities=18%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             HHHHHhccc--cccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CC
Q 046346          131 SVMIQKCKN--VFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AI  200 (209)
Q Consensus       131 ~~~~~~~~~--~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~  200 (209)
                      ..+++.++|  .+....+|||||||+|.++..+++++ +.+++++|+ +.+++.|++      ..++++++.+|+.+ ++
T Consensus        68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  146 (297)
T 2o57_A           68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC  146 (297)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred             HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence            445555510  15667899999999999999999987 458999999 777877764      34789999999987 55


Q ss_pred             CC--CcEEEe
Q 046346          201 SP--ADAVVL  208 (209)
Q Consensus       201 p~--~D~~~l  208 (209)
                      |.  +|+|+.
T Consensus       147 ~~~~fD~v~~  156 (297)
T 2o57_A          147 EDNSYDFIWS  156 (297)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCCEeEEEe
Confidence            53  899875

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.76  E-value=2.4e-08  Score=81.02  Aligned_cols=76  Identities=24%  Similarity=0.278  Sum_probs=59.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc---C---CCCeEEEEccCCCCCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES---D---LVNLKYVGGDMFKAISP  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~---~---~~ri~~~~gD~~~~~p~  202 (209)
                      ..+++.++  ..+..+|||+|||+|.++..+++. +|..+++++|+ +.+++.|++   .   .++++++.+|+.+++|.
T Consensus       100 ~~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~  177 (275)
T 1yb2_A          100 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD  177 (275)
T ss_dssp             ------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred             HHHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence            34455555  566789999999999999999998 89999999999 788887764   1   25899999999887664


Q ss_pred             --CcEEEe
Q 046346          203 --ADAVVL  208 (209)
Q Consensus       203 --~D~~~l  208 (209)
                        +|+|++
T Consensus       178 ~~fD~Vi~  185 (275)
T 1yb2_A          178 QMYDAVIA  185 (275)
T ss_dssp             CCEEEEEE
T ss_pred             CCccEEEE
Confidence              899975

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.75  E-value=4e-08  Score=78.32  Aligned_cols=75  Identities=19%  Similarity=0.213  Sum_probs=58.9

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCC-
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP-  202 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~-  202 (209)
                      .+++.+. ...+..+|||||||+|.++..+++++|. +++++|+ +.+++.+++      ..+|++++.+|+.+ +++. 
T Consensus        36 ~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  113 (257)
T 3f4k_A           36 KAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE  113 (257)
T ss_dssp             HHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred             HHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence            3444442 1455679999999999999999999997 9999999 778877664      35679999999966 5543 


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|+|+.
T Consensus       114 ~fD~v~~  120 (257)
T 3f4k_A          114 ELDLIWS  120 (257)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence             899975

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.75  E-value=2.9e-08  Score=79.29  Aligned_cols=75  Identities=13%  Similarity=0.309  Sum_probs=60.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCC---CCeEEEEccCCC-CCCC--C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDL---VNLKYVGGDMFK-AISP--A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~---~ri~~~~gD~~~-~~p~--~  203 (209)
                      ..+++.++  ..+..+|||||||+|.++..+++++ ..+++++|+ +.+++.+++..   ++++++.+|+.+ ++|.  +
T Consensus        45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  121 (266)
T 3ujc_A           45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF  121 (266)
T ss_dssp             HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred             HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence            34444444  5567899999999999999999998 779999999 78888877522   789999999987 5653  8


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+|+.
T Consensus       122 D~v~~  126 (266)
T 3ujc_A          122 DLIYS  126 (266)
T ss_dssp             EEEEE
T ss_pred             EEEeH
Confidence            99975

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.75  E-value=2.2e-08  Score=81.55  Aligned_cols=68  Identities=16%  Similarity=0.233  Sum_probs=57.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ..+..+|||||||+|.++..+++.+|. .+++++|+ |.+++.+++    ...+++++.+|+.+ +.+. +|+|+.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~   95 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAIC   95 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEE
Confidence            456789999999999999999999995 89999999 777877764    23489999999987 4555 999875

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.74  E-value=2.7e-08  Score=74.78  Aligned_cols=74  Identities=20%  Similarity=0.330  Sum_probs=58.5

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC---
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS---  201 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p---  201 (209)
                      .+++.+.  .....+|||||||+|.++..+++++|..+++++|+ +.+++.|++      ..+++ ++.+|..+.+|   
T Consensus        16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~   92 (178)
T 3hm2_A           16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP   92 (178)
T ss_dssp             HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred             HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence            3444444  45667999999999999999999999999999999 678887764      23488 88899876433   


Q ss_pred             -CCcEEEe
Q 046346          202 -PADAVVL  208 (209)
Q Consensus       202 -~~D~~~l  208 (209)
                       .+|++++
T Consensus        93 ~~~D~i~~  100 (178)
T 3hm2_A           93 DNPDVIFI  100 (178)
T ss_dssp             SCCSEEEE
T ss_pred             CCCCEEEE
Confidence             3999985

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.74  E-value=2.4e-08  Score=77.72  Aligned_cols=76  Identities=18%  Similarity=0.249  Sum_probs=61.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~  202 (209)
                      ..+++.++  .....+|||||||+|.++..+++.+ |..+++++|. +.+++.+++     ...+++++.+|+.+ +++.
T Consensus        27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            44556565  5667899999999999999999997 8889999999 788887764     23589999999987 5553


Q ss_pred             --CcEEEe
Q 046346          203 --ADAVVL  208 (209)
Q Consensus       203 --~D~~~l  208 (209)
                        +|+|++
T Consensus       105 ~~fD~v~~  112 (219)
T 3dh0_A          105 NTVDFIFM  112 (219)
T ss_dssp             SCEEEEEE
T ss_pred             CCeeEEEe
Confidence              899975

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.74  E-value=5.2e-08  Score=76.67  Aligned_cols=64  Identities=28%  Similarity=0.381  Sum_probs=55.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC-CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP-ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~-~D~~~  207 (209)
                      .+..+|||||||+|.++..++++++  +++++|+ +.+++.+++...+++++.+|+.+ +.+. +|+|+
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~  105 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVV  105 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEE
Confidence            4668999999999999999999987  7899999 88898888656789999999987 4444 89997

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.74  E-value=1.6e-08  Score=80.10  Aligned_cols=68  Identities=9%  Similarity=0.254  Sum_probs=57.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC----C-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS----P-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p----~-~D~~~l  208 (209)
                      ..+..+|||||||+|..+..+++.+|..+++.+|+ +.+++.|++      ..++|+++.+|+.+.+|    . +|+|++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            34678999999999999999999999999999999 788887775      24699999999987444    3 899975

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.73  E-value=2.7e-08  Score=80.33  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=54.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ....+|||||||+|.++..|++++.  +++++|. +.+++.|+ ...+|+++.+|+.+ ++|.  +|+|+.
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~-~~~~v~~~~~~~e~~~~~~~sfD~v~~  105 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQAL-RHPRVTYAVAPAEDTGLPPASVDVAIA  105 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCC-CCTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhh-hcCCceeehhhhhhhcccCCcccEEEE
Confidence            4567999999999999999999874  6889999 78899887 46799999999976 6664  899975

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.73  E-value=4.1e-08  Score=78.99  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ..+..+|||||||+|.++..+++. |..+++++|+ +.+++.|++      ..++++++.+|+.+ +++.  +|+|+.
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~  120 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWS  120 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEE
Confidence            456789999999999999999998 8889999999 788887764      34789999999976 5443  899975

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.73  E-value=8.9e-08  Score=78.97  Aligned_cols=85  Identities=12%  Similarity=0.056  Sum_probs=63.5

Q ss_pred             HHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEc
Q 046346          122 MASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGG  194 (209)
Q Consensus       122 m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~g  194 (209)
                      +..........+++.++. +.+..+|||||||+|.++..+++++ ..+++++|+ +.+++.|++      ..++++++.+
T Consensus        97 ~~~~~~~~~~~l~~~l~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  174 (312)
T 3vc1_A           97 LHRLESAQAEFLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC  174 (312)
T ss_dssp             HHHHHHHHHHHHHTTSCC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             hhhHHHHHHHHHHHHhcc-CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            333333333455555541 4567899999999999999999986 678999999 788887764      3468999999


Q ss_pred             cCCC-CCCC--CcEEEe
Q 046346          195 DMFK-AISP--ADAVVL  208 (209)
Q Consensus       195 D~~~-~~p~--~D~~~l  208 (209)
                      |+.+ +++.  +|+|+.
T Consensus       175 d~~~~~~~~~~fD~V~~  191 (312)
T 3vc1_A          175 NMLDTPFDKGAVTASWN  191 (312)
T ss_dssp             CTTSCCCCTTCEEEEEE
T ss_pred             ChhcCCCCCCCEeEEEE
Confidence            9987 5553  999975

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.72  E-value=5.3e-08  Score=79.82  Aligned_cols=74  Identities=14%  Similarity=0.143  Sum_probs=60.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP-  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~-  202 (209)
                      ..+++.++  ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.|++      ..++++++.+|+.+- +. 
T Consensus        62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  137 (302)
T 3hem_A           62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP  137 (302)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred             HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence            44566665  56778999999999999999999988 89999999 788887764      345899999999654 55 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+|+.
T Consensus       138 fD~v~~  143 (302)
T 3hem_A          138 VDRIVS  143 (302)
T ss_dssp             CSEEEE
T ss_pred             ccEEEE
Confidence            999875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.71  E-value=4.2e-08  Score=83.42  Aligned_cols=75  Identities=19%  Similarity=0.286  Sum_probs=61.3

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C--CCCeEEEEccCCCCCCC
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D--LVNLKYVGGDMFKAISP  202 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~--~~ri~~~~gD~~~~~p~  202 (209)
                      .+++.++  .....+|||+|||+|.++..+++++|..+++++|. +.+++.+++      .  ..+++|+.+|++++++.
T Consensus       213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~  290 (375)
T 4dcm_A          213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  290 (375)
T ss_dssp             HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred             HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence            4556565  33458999999999999999999999999999999 778887764      1  13689999999997764


Q ss_pred             --CcEEEe
Q 046346          203 --ADAVVL  208 (209)
Q Consensus       203 --~D~~~l  208 (209)
                        +|+|++
T Consensus       291 ~~fD~Ii~  298 (375)
T 4dcm_A          291 FRFNAVLC  298 (375)
T ss_dssp             TCEEEEEE
T ss_pred             CCeeEEEE
Confidence              999985

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.71  E-value=8e-08  Score=74.68  Aligned_cols=72  Identities=17%  Similarity=0.210  Sum_probs=57.7

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---CCC
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---ISP  202 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~p~  202 (209)
                      ++..++  .....+|||||||+|.++..++++  ..+++++|+ +.+++.|++      ..++++++.+|+.+.   .+.
T Consensus        47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  122 (204)
T 3njr_A           47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL  122 (204)
T ss_dssp             HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred             HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence            344444  556789999999999999999998  788999999 788887774      234899999999873   345


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|++++
T Consensus       123 ~D~v~~  128 (204)
T 3njr_A          123 PEAVFI  128 (204)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            999875

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.70  E-value=1.3e-07  Score=76.95  Aligned_cols=56  Identities=18%  Similarity=0.303  Sum_probs=50.1

Q ss_pred             CCCeEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC
Q 046346          143 GLNSLVDVGGGT---GTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK  198 (209)
Q Consensus       143 ~~~~vlDvGgG~---G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~  198 (209)
                      +..+|||||||+   |.++..+.+.+|+.+++.+|+ |.+++.|++   ..++++++.+|+++
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~  139 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRD  139 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCC
Confidence            458999999999   999888889999999999999 899998885   24789999999986

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.70  E-value=6.2e-08  Score=78.60  Aligned_cols=66  Identities=27%  Similarity=0.395  Sum_probs=56.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-P-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-~-~D~~~l  208 (209)
                      +..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++     ...+++++.+|++++++ . +|+|+.
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~  182 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVS  182 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEE
Confidence            457999999999999999999999999999999 788887764     22489999999998663 3 999975

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.70  E-value=4.6e-08  Score=80.12  Aligned_cols=67  Identities=24%  Similarity=0.267  Sum_probs=56.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----C---CCCeEEEEccCCC-CCC-------C-C
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----D---LVNLKYVGGDMFK-AIS-------P-A  203 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~----~---~~ri~~~~gD~~~-~~p-------~-~  203 (209)
                      .+..+|||||||+|.++..+++++ |..+++++|+ +.+++.|++    .   ..+++++.+|+.+ +++       . +
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            467899999999999999999998 8999999999 788888765    2   6799999999987 322       3 8


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+|+.
T Consensus       115 D~V~~  119 (299)
T 3g5t_A          115 DMITA  119 (299)
T ss_dssp             EEEEE
T ss_pred             eEEeH
Confidence            99875

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.70  E-value=2.3e-08  Score=77.66  Aligned_cols=66  Identities=11%  Similarity=0.029  Sum_probs=54.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-----------------CCCeEEEEccCCC-CCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-----------------LVNLKYVGGDMFK-AIS  201 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----------------~~ri~~~~gD~~~-~~p  201 (209)
                      .....+|||||||+|..+..++++  ..+++++|+ +.+++.|++.                 ..+++++.+|+++ +.+
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            456789999999999999999998  568999999 7888887641                 3589999999987 432


Q ss_pred             ---CCcEEEe
Q 046346          202 ---PADAVVL  208 (209)
Q Consensus       202 ---~~D~~~l  208 (209)
                         .+|+|+.
T Consensus        98 ~~~~fD~v~~  107 (203)
T 1pjz_A           98 DIGHCAAFYD  107 (203)
T ss_dssp             HHHSEEEEEE
T ss_pred             cCCCEEEEEE
Confidence               3899873

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.69  E-value=4.4e-08  Score=79.07  Aligned_cols=68  Identities=21%  Similarity=0.440  Sum_probs=57.8

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      +.+..+|||||||+|.++..+++++|..+++++|. +.+++.+++     ..++++++.+|+.+ +++.  +|+|+.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  111 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV  111 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEE
Confidence            45678999999999999999999999999999999 788887764     23589999999987 4443  899975

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.69  E-value=4.3e-08  Score=73.93  Aligned_cols=60  Identities=22%  Similarity=0.308  Sum_probs=51.6

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS-P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p-~-~D~~~l  208 (209)
                      ....+|||||||+|.++..++++.   +++++|+ +.+++.    ..+++++.+|++++++ . +|+++.
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~~~fD~i~~   84 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----HRGGNLVRADLLCSINQESVDVVVF   84 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----CSSSCEEECSTTTTBCGGGCSEEEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----ccCCeEEECChhhhcccCCCCEEEE
Confidence            345699999999999999999998   8999999 677776    5689999999998766 3 999875

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.69  E-value=5.4e-08  Score=75.14  Aligned_cols=65  Identities=26%  Similarity=0.301  Sum_probs=54.7

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-P-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-~-~D~~~l  208 (209)
                      ..+|||||||+|.++..+++.+|..+++++|. +.+++.+++     ...+++++.+|+.+..| . +|+++.
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~  138 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVIS  138 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEEC
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEE
Confidence            67999999999999999999999999999999 778877764     12459999999987443 3 899874

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.67  E-value=4.5e-08  Score=76.57  Aligned_cols=66  Identities=23%  Similarity=0.307  Sum_probs=54.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C--CCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--ISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~--~p~--~D~~~l  208 (209)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.|++     ...+++++.+|+.+ +  ++.  +|.+++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            457899999999999999999999999999999 778877764     23679999999876 2  443  787754

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.67  E-value=8.1e-08  Score=76.48  Aligned_cols=74  Identities=18%  Similarity=0.143  Sum_probs=59.1

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--CCCeEEEEccCCC-CCCC--CcE
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDMFK-AISP--ADA  205 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~~~-~~p~--~D~  205 (209)
                      .+.+.++  .....+|||||||+|.++..++++.+. +++++|+ +.+++.+++.  ..+++++.+|+.+ +++.  +|+
T Consensus        35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence            3444444  346789999999999999999999776 8999999 7888888752  4789999999976 5543  899


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |+.
T Consensus       112 v~~  114 (253)
T 3g5l_A          112 VLS  114 (253)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.67  E-value=5.5e-08  Score=75.70  Aligned_cols=74  Identities=14%  Similarity=0.232  Sum_probs=59.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCC-CCeEEEEccCCC-CCCC-CcEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDL-VNLKYVGGDMFK-AISP-ADAV  206 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~-~ri~~~~gD~~~-~~p~-~D~~  206 (209)
                      ..+++.+.  .....+|||||||+|.++..++++  ..+++++|. +.+++.+++.. .+++++.+|+.+ +.+. +|++
T Consensus        35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v  110 (220)
T 3hnr_A           35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI  110 (220)
T ss_dssp             HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred             HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence            34555554  446789999999999999999998  568999999 78888887633 589999999987 4544 9999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      +.
T Consensus       111 ~~  112 (220)
T 3hnr_A          111 VS  112 (220)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.67  E-value=6.1e-09  Score=80.49  Aligned_cols=67  Identities=24%  Similarity=0.289  Sum_probs=46.1

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC----CCCeEEEEccCCCCCC------C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD----LVNLKYVGGDMFKAIS------P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~~ri~~~~gD~~~~~p------~-~D~~~l  208 (209)
                      .+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++.    ..+++++.+|++++++      . +|+++.
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence            5678999999999999999999999999999999 7888887752    1178999999887433      3 899875

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.66  E-value=3.8e-08  Score=84.25  Aligned_cols=76  Identities=17%  Similarity=0.211  Sum_probs=60.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------------C-CCCeEEEEcc
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------------D-LVNLKYVGGD  195 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------------~-~~ri~~~~gD  195 (209)
                      ..+++.+.  .....+|||||||+|.++..+++.++..+++++|+ +.+++.|+.             . .++|+|+.||
T Consensus       163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            44555555  66778999999999999999999998878999999 566666542             1 3789999999


Q ss_pred             CCC-CC----CCCcEEEe
Q 046346          196 MFK-AI----SPADAVVL  208 (209)
Q Consensus       196 ~~~-~~----p~~D~~~l  208 (209)
                      +++ ++    +.+|+|++
T Consensus       241 ~~~lp~~d~~~~aDVVf~  258 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFV  258 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEE
T ss_pred             ccCCccccccCCccEEEE
Confidence            998 44    34899875

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.66  E-value=7.9e-08  Score=75.78  Aligned_cols=93  Identities=14%  Similarity=0.043  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhhhH----hhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--
Q 046346          113 KLNNFFNEAMASDAR----LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--  185 (209)
Q Consensus       113 ~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--  185 (209)
                      +....|...+.....    ...+.+.+.++  .....+|||||||+|.++..++++.+ .+++++|+ +.+++.+++.  
T Consensus        11 ~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~   87 (243)
T 3bkw_A           11 DFFAGYSQLGRSIEGLDGAAEWPALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGP   87 (243)
T ss_dssp             --------------CGGGCTTHHHHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSC
T ss_pred             HHHHHHHHhccCCccHHHHHhHHHHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcc
Confidence            344555555443221    22234555555  44678999999999999999999843 38999999 7888887752  


Q ss_pred             CCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          186 LVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       186 ~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ..+++++.+|+.+ +++.  +|+|+.
T Consensus        88 ~~~~~~~~~d~~~~~~~~~~fD~v~~  113 (243)
T 3bkw_A           88 DTGITYERADLDKLHLPQDSFDLAYS  113 (243)
T ss_dssp             SSSEEEEECCGGGCCCCTTCEEEEEE
T ss_pred             cCCceEEEcChhhccCCCCCceEEEE
Confidence            3479999999977 4543  899875

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.66  E-value=8.4e-08  Score=74.77  Aligned_cols=67  Identities=18%  Similarity=0.200  Sum_probs=51.8

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhh----ccc-----CCCCeEEEEccCCC-CCCC-CcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG----LES-----DLVNLKYVGGDMFK-AISP-ADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~----a~~-----~~~ri~~~~gD~~~-~~p~-~D~~~  207 (209)
                      ..+..+|||||||+|.++..+++++|..+++++|+ +.+++.    +++     ..++++++.+|+.+ +++. .|.++
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence            45678999999999999999999999999999999 565553    221     23589999999987 4432 25543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.66  E-value=6e-08  Score=78.58  Aligned_cols=75  Identities=20%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC-CcEE
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP-ADAV  206 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~-~D~~  206 (209)
                      ...+++.+.  ..+..+|||||||+|.++..+++  |..+++++|+ +.+++.+++...+++++.+|+.+ +.+. +|+|
T Consensus        46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v  121 (279)
T 3ccf_A           46 GEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAV  121 (279)
T ss_dssp             CCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEE
T ss_pred             HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEE
Confidence            344555555  45678999999999999999999  7889999999 78888887655789999999977 4444 8998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      +.
T Consensus       122 ~~  123 (279)
T 3ccf_A          122 FS  123 (279)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.66  E-value=6.8e-08  Score=76.86  Aligned_cols=66  Identities=14%  Similarity=0.086  Sum_probs=55.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCC--CC-----CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA--IS-----PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~----~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~--~p-----~~D~~~l  208 (209)
                      ...+|||||||+|..+..+++.    +|+.+++.+|+ |.+++.|+...++|+++.+|+.+.  +|     .+|++++
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~  158 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI  158 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence            3579999999999999999998    79999999999 788888875568999999999873  22     2899875

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.65  E-value=5.2e-08  Score=77.86  Aligned_cols=66  Identities=14%  Similarity=0.060  Sum_probs=54.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccC----CCCCC----C-CcEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDM----FKAIS----P-ADAV  206 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~----~~~~p----~-~D~~  206 (209)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.|++      ..+|++++.+|.    +++++    . +|+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            467999999999999999999999999999999 788888774      345799999994    33454    3 8998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      +.
T Consensus       145 ~~  146 (254)
T 2h00_A          145 MC  146 (254)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.65  E-value=4.7e-08  Score=73.49  Aligned_cols=73  Identities=21%  Similarity=0.254  Sum_probs=58.1

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC--CC
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PA  203 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p--~~  203 (209)
                      .+++.++  .....+|||||||+|.++..+++  +..+++++|. +.+++.+++     ..++++++.+|+.+++|  .+
T Consensus        26 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~  101 (183)
T 2yxd_A           26 VSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF  101 (183)
T ss_dssp             HHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence            3444444  45668999999999999999998  8889999998 778887764     12689999999987655  38


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+++.
T Consensus       102 D~i~~  106 (183)
T 2yxd_A          102 NKAFI  106 (183)
T ss_dssp             SEEEE
T ss_pred             cEEEE
Confidence            99985

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.64  E-value=1.5e-07  Score=72.66  Aligned_cols=66  Identities=18%  Similarity=0.245  Sum_probs=53.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~-~D~~~l  208 (209)
                      ....+|||||||+|.++..+++ +|..+++++|+ +.+++.|++     ...+++++.+|+.+..+. +|+++.
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~  131 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVA  131 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEE
Confidence            4568999999999999999776 57789999999 788887764     122499999999886555 999875

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.64  E-value=1.3e-07  Score=76.75  Aligned_cols=74  Identities=16%  Similarity=0.217  Sum_probs=58.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP-  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~-  202 (209)
                      ..+++.++  ..+..+|||||||+|.++..++++++. +++++|+ +.+++.+++      ..++++++.+|+. ++|. 
T Consensus        54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~  129 (287)
T 1kpg_A           54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEP  129 (287)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCC
T ss_pred             HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCCC
Confidence            44555555  566789999999999999999988765 9999999 788877764      2468999999995 4445 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+|+.
T Consensus       130 fD~v~~  135 (287)
T 1kpg_A          130 VDRIVS  135 (287)
T ss_dssp             CSEEEE
T ss_pred             eeEEEE
Confidence            999875

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.64  E-value=4.2e-08  Score=75.59  Aligned_cols=66  Identities=18%  Similarity=0.183  Sum_probs=53.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--CCCeEEEEccCCCC-CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--LVNLKYVGGDMFKA-ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~--~~ri~~~~gD~~~~-~p~-~D~~~l  208 (209)
                      .....+|||+|||+|.++..++...|+.+++..|+ +.+++.+++    .  ..++++  .|..+. .|+ +|++++
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa  121 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFL  121 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhH
Confidence            35689999999999999999999999999999999 788888775    2  235666  777664 444 899974

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.63  E-value=1.1e-07  Score=75.39  Aligned_cols=76  Identities=21%  Similarity=0.367  Sum_probs=60.2

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCC
Q 046346          129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS  201 (209)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p  201 (209)
                      ....+++.++  .....+|||||||+|.++..+++.++  +++++|+ +.+++.+++     ...+++++.+|+.+ +++
T Consensus         9 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~   84 (239)
T 1xxl_A            9 SLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP   84 (239)
T ss_dssp             HHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC
T ss_pred             CcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCC
Confidence            3445566666  66788999999999999999999986  7899999 778877764     23689999999976 554


Q ss_pred             C--CcEEEe
Q 046346          202 P--ADAVVL  208 (209)
Q Consensus       202 ~--~D~~~l  208 (209)
                      .  +|+|+.
T Consensus        85 ~~~fD~v~~   93 (239)
T 1xxl_A           85 DDSFDIITC   93 (239)
T ss_dssp             TTCEEEEEE
T ss_pred             CCcEEEEEE
Confidence            3  899975

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.63  E-value=6.3e-08  Score=79.60  Aligned_cols=68  Identities=13%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCCCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISPADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~~D~~~l  208 (209)
                      .....+|||||||+|.++..++.+.|+.+++++|+ |++++.|++     ..++|+|+.+|+.+ +-..+|++++
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~  194 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMV  194 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEE
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEE
Confidence            56789999999999988877777788999999999 899988875     12799999999976 3123999985

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.63  E-value=1.6e-07  Score=82.34  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~  202 (209)
                      ...+++.+.  .....+|||||||+|.++..+++ .|..+++++|+.++++.|++      ..++|+++.+|+.+ ++|.
T Consensus       147 ~~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~  223 (480)
T 3b3j_A          147 QRAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE  223 (480)
T ss_dssp             HHHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred             HHHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence            344555554  44568999999999999998887 68889999999777777664      34799999999988 6676


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|+|+.
T Consensus       224 ~fD~Ivs  230 (480)
T 3b3j_A          224 QVDIIIS  230 (480)
T ss_dssp             CEEEEEC
T ss_pred             CeEEEEE
Confidence             999975

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.62  E-value=4.3e-08  Score=77.14  Aligned_cols=66  Identities=23%  Similarity=0.275  Sum_probs=54.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC----CCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA----ISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~----~p~--~D~~~l  208 (209)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.|++     ...+++++.+|+.+-    +|.  +|.+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~  111 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL  111 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence            468999999999999999999999999999999 677777654     245799999997652    443  787764

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.62  E-value=5.2e-08  Score=80.89  Aligned_cols=65  Identities=18%  Similarity=0.265  Sum_probs=56.0

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---CCC-C-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS-P-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~~p-~-~D~~~l  208 (209)
                      ..+|||||||+|.++..+++++|+.+++++|+ |.+++.|++     ..+|++++.+|.++   ..+ . +|+|++
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR  165 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence            34999999999999999999999999999999 889998886     24699999999775   344 3 999985

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.61  E-value=7.6e-08  Score=78.78  Aligned_cols=88  Identities=15%  Similarity=0.238  Sum_probs=59.2

Q ss_pred             HHHHHHHHhh-hHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC---
Q 046346          116 NFFNEAMASD-ARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL---  186 (209)
Q Consensus       116 ~~f~~~m~~~-~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~---  186 (209)
                      ..|...+... .......+++.++   ....+|||||||+|.++..++++  ..+++++|+ +.+++.|++    ..   
T Consensus        57 ~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~  131 (299)
T 3g2m_A           57 DTYRDLIQDADGTSEAREFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADV  131 (299)
T ss_dssp             ---------CCCHHHHHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHhcccCccHHHHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhccccc
Confidence            3344444432 2233445555554   23459999999999999999998  567999999 788888775    12   


Q ss_pred             -CCeEEEEccCCC-CCCC-CcEEEe
Q 046346          187 -VNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       187 -~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                       .+++++.+|+.+ +.+. +|+|++
T Consensus       132 ~~~v~~~~~d~~~~~~~~~fD~v~~  156 (299)
T 3g2m_A          132 RDRCTLVQGDMSAFALDKRFGTVVI  156 (299)
T ss_dssp             HTTEEEEECBTTBCCCSCCEEEEEE
T ss_pred             ccceEEEeCchhcCCcCCCcCEEEE
Confidence             689999999987 5555 998874

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.59  E-value=2.7e-08  Score=81.80  Aligned_cols=68  Identities=16%  Similarity=0.154  Sum_probs=57.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIA-KAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~-~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ..+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.|++      ..+|++++.+|+.+ +.+. +|+|+.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~  193 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTS  193 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEEC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEE
Confidence            4567899999999999999996 7899999999999 788887775      24579999999987 4445 999975

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.59  E-value=1.2e-07  Score=76.87  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=62.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~  202 (209)
                      ..++..++  .....+|||+|||+|.++..++++ .|..+++++|+ +.+++.|++      ..+++++..+|+.+.+|.
T Consensus       102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  179 (277)
T 1o54_A          102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE  179 (277)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred             HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence            44555555  566789999999999999999999 78999999998 788887764      126899999999886653


Q ss_pred             --CcEEEe
Q 046346          203 --ADAVVL  208 (209)
Q Consensus       203 --~D~~~l  208 (209)
                        +|++++
T Consensus       180 ~~~D~V~~  187 (277)
T 1o54_A          180 KDVDALFL  187 (277)
T ss_dssp             CSEEEEEE
T ss_pred             CccCEEEE
Confidence              899985

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.59  E-value=1.7e-07  Score=72.24  Aligned_cols=67  Identities=16%  Similarity=0.186  Sum_probs=55.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---CCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---LVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      .....+|||||||+|.++..++++.+. +++++|+ +.+++.+++.   ..+++++.+|+.+ +++.  +|+|+.
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~  113 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLE  113 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEE
Confidence            356789999999999999999999776 8999999 7888877752   3689999999987 5553  899974

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.59  E-value=1.8e-07  Score=74.53  Aligned_cols=66  Identities=14%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC----CCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD----LVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ..+..+|||||||+|.++..++++  ..+++++|. +.+++.+++.    ..+++++.+|+.+ +++.  +|+++.
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  110 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIV  110 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEE
Confidence            456789999999999999999987  568999999 7888877642    5789999999976 4443  899875

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.59  E-value=1.4e-07  Score=74.44  Aligned_cols=67  Identities=19%  Similarity=0.262  Sum_probs=54.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-----CCCC-CcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-----AISP-ADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-----~~p~-~D~~~  207 (209)
                      +.+..+|||||||+|.++..+++.+|..+++++|. +.+++.+++   ..++++++.+|+.+     +++. +|+++
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE
Confidence            45678999999999999999999999889999999 677766553   23789999999976     2223 89886

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.59  E-value=2.2e-07  Score=70.32  Aligned_cols=74  Identities=15%  Similarity=0.353  Sum_probs=58.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCC--CeEEEEccCCCCCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLV--NLKYVGGDMFKAISP  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~--ri~~~~gD~~~~~p~  202 (209)
                      ..+++.+.  .....+|||||||+|.++..++++  ..+++++|+ +.+++.+++     ...  |++++.+|+.+..+.
T Consensus        42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  117 (194)
T 1dus_A           42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD  117 (194)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred             HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence            34455555  456789999999999999999998  778999999 778877764     122  599999999886543


Q ss_pred             --CcEEEe
Q 046346          203 --ADAVVL  208 (209)
Q Consensus       203 --~D~~~l  208 (209)
                        +|+++.
T Consensus       118 ~~~D~v~~  125 (194)
T 1dus_A          118 RKYNKIIT  125 (194)
T ss_dssp             SCEEEEEE
T ss_pred             CCceEEEE
Confidence              899875

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.58  E-value=1.4e-07  Score=76.01  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechH-------HHhhccc------CCCCeEEEEcc-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPH-------VVNGLES------DLVNLKYVGGD-  195 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~-------v~~~a~~------~~~ri~~~~gD-  195 (209)
                      ..+++.++  ..+..+|||||||+|.++..+++++ |+.+++++|+.+       +++.|++      ..++++++.+| 
T Consensus        33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  110 (275)
T 3bkx_A           33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence            34555555  5667899999999999999999996 889999999943       6777664      12689999998 


Q ss_pred             CCC---CCC-C-CcEEEe
Q 046346          196 MFK---AIS-P-ADAVVL  208 (209)
Q Consensus       196 ~~~---~~p-~-~D~~~l  208 (209)
                      +..   +++ . +|+|+.
T Consensus       111 ~~~~~~~~~~~~fD~v~~  128 (275)
T 3bkx_A          111 LSDDLGPIADQHFDRVVL  128 (275)
T ss_dssp             TTTCCGGGTTCCCSEEEE
T ss_pred             hhhccCCCCCCCEEEEEE
Confidence            654   233 2 899975

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.58  E-value=4.9e-08  Score=78.11  Aligned_cols=68  Identities=10%  Similarity=0.195  Sum_probs=56.7

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CCC---CCcEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AIS---PADAV  206 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~p---~~D~~  206 (209)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++      ..++|+++.+|+.+   .++   .+|+|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            44678999999999999999999998 889999999 788887764      34689999999865   222   38999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       141 ~~  142 (248)
T 3tfw_A          141 FI  142 (248)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.58  E-value=9.2e-08  Score=76.10  Aligned_cols=67  Identities=13%  Similarity=0.262  Sum_probs=53.8

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------CCCCeEEEEccCCCC----CCC--C
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------DLVNLKYVGGDMFKA----ISP--A  203 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~~ri~~~~gD~~~~----~p~--~  203 (209)
                      ....+|||||||+|.++..+++++|+.+++++|+ +.+++.|++           ...+|+++.+|+.+.    ++.  +
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            4567999999999999999999999999999999 677765542           246899999999763    333  7


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |.+++
T Consensus       125 D~v~~  129 (235)
T 3ckk_A          125 TKMFF  129 (235)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            88764

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.58  E-value=2.7e-07  Score=72.70  Aligned_cols=68  Identities=15%  Similarity=0.283  Sum_probs=56.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C--CC-CcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I--SP-ADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~--p~-~D~~~  207 (209)
                      ..+..+|||||||+|..+..+++.+|..+++++|+ +.+++.|++      ..++++++.+|+.+.   .  +. +|+|+
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            34568999999999999999999999999999999 788887764      236899999999873   2  23 89987


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       132 ~  132 (233)
T 2gpy_A          132 I  132 (233)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.58  E-value=1.7e-07  Score=73.94  Aligned_cols=66  Identities=15%  Similarity=0.309  Sum_probs=55.1

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC--CCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD--LVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~--~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ..+..+|||||||+|.++..++++  ..+++++|+ +.+++.+++.  ..+++++.+|+.+ ++|.  +|+++.
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  122 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMA  122 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEE
Confidence            346789999999999999999998  568999999 7888887753  5789999999987 5543  899975

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.58  E-value=4.1e-08  Score=76.81  Aligned_cols=68  Identities=12%  Similarity=0.187  Sum_probs=56.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC--------CCCc
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI--------SPAD  204 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~--------p~~D  204 (209)
                      ..+..+|||||||+|..+..+++++| +.+++.+|+ +.+++.|++      ..++++++.+|+.+.+        ..+|
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            34678999999999999999999999 789999999 788887764      3468999999987622        2389


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      ++++
T Consensus       136 ~v~~  139 (223)
T 3duw_A          136 FIFI  139 (223)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.58  E-value=1.4e-07  Score=76.03  Aligned_cols=68  Identities=18%  Similarity=0.283  Sum_probs=56.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---------CCCeEEEEccCCCC--------CC-
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---------LVNLKYVGGDMFKA--------IS-  201 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------~~ri~~~~gD~~~~--------~p-  201 (209)
                      .....+|||+|||+|.++..+++++|..+++++|+ +.+++.|++.         .+|++++.+|+.+.        ++ 
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            34567999999999999999999999999999999 7888777641         23799999999874        33 


Q ss_pred             C-CcEEEe
Q 046346          202 P-ADAVVL  208 (209)
Q Consensus       202 ~-~D~~~l  208 (209)
                      . +|+|+.
T Consensus       114 ~~fD~Vv~  121 (260)
T 2ozv_A          114 EHFHHVIM  121 (260)
T ss_dssp             TCEEEEEE
T ss_pred             CCcCEEEE
Confidence            3 899985

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.58  E-value=1.1e-07  Score=74.92  Aligned_cols=74  Identities=18%  Similarity=0.319  Sum_probs=56.5

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEEccCCCCCC-C-CcEEE
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFKAIS-P-ADAVV  207 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~~ri~~~~gD~~~~~p-~-~D~~~  207 (209)
                      .+++.+.. .....+|||||||+|.++..++++++  +++++|+ +.+++.|++. ..+++++.+|+.+..+ . +|+|+
T Consensus        32 ~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~  108 (250)
T 2p7i_A           32 FMVRAFTP-FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIV  108 (250)
T ss_dssp             HHHHHHGG-GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEE
T ss_pred             HHHHHHHh-hcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEE
Confidence            34444432 23567899999999999999999987  5888999 7888888753 2289999999977533 3 89997


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       109 ~  109 (250)
T 2p7i_A          109 L  109 (250)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.57  E-value=2.1e-07  Score=73.97  Aligned_cols=65  Identities=22%  Similarity=0.407  Sum_probs=53.6

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      .+..+|||||||+|.++..++++  +.+++++|+ +.+++.|++    ...+++++.+|+.+ +.+. +|++++
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~  111 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTM  111 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEE
Confidence            45689999999999999999997  568999999 788887764    24479999999987 4554 899874

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.57  E-value=1.6e-07  Score=74.27  Aligned_cols=75  Identities=20%  Similarity=0.368  Sum_probs=59.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC--
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP--  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~--  202 (209)
                      ..+++.++  ..+..+|||||||+|.++..+++..| .+++++|+ +.+++.|++     ...++++..+|+..++|.  
T Consensus        81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (235)
T 1jg1_A           81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  157 (235)
T ss_dssp             HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence            33444444  55678999999999999999999998 88999997 788887764     124699999998656653  


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|+|++
T Consensus       158 ~fD~Ii~  164 (235)
T 1jg1_A          158 PYDVIIV  164 (235)
T ss_dssp             CEEEEEE
T ss_pred             CccEEEE
Confidence             799875

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.57  E-value=2e-07  Score=70.57  Aligned_cols=65  Identities=25%  Similarity=0.350  Sum_probs=55.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      .+..+|||||||+|.++..+++.  +.+++++|. +.+++.+++...+++++.+|+.+ ++|.  +|+++.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  113 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS  113 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence            46789999999999999999998  568999999 78888887656679999999987 5553  899986

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.56  E-value=1.4e-07  Score=74.84  Aligned_cols=75  Identities=17%  Similarity=0.296  Sum_probs=58.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---CCCeEEEEccCCC-CCCC--C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---LVNLKYVGGDMFK-AISP--A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~~ri~~~~gD~~~-~~p~--~  203 (209)
                      ..+++.++  ..+..+|||||||+|.++..+++++ ..+++++|. +.+++.+++.   ..+++++.+|+.+ +++.  +
T Consensus        83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T 1xtp_A           83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence            34455554  4567899999999999999999987 557899998 7888887752   2689999999976 4543  8


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+|+.
T Consensus       160 D~v~~  164 (254)
T 1xtp_A          160 DLIVI  164 (254)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99975

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.56  E-value=1.9e-07  Score=70.84  Aligned_cols=66  Identities=14%  Similarity=0.189  Sum_probs=52.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC--CC-CC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--AI-SP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~--~~-p~-~D~~~l  208 (209)
                      .....+|||||||+|.++..++++  ..+++++|+ |.+++.|++     ..++++++..|+.+  ++ +. +|++++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            456789999999999999999998  788999999 788888775     12789999977654  13 33 899874

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.56  E-value=1.3e-07  Score=79.32  Aligned_cols=76  Identities=20%  Similarity=0.323  Sum_probs=59.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCC-Cc
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISP-AD  204 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~-~D  204 (209)
                      ..+++.++  .....+|||||||+|.++..+++++|+.+++++|. +.+++.+++    ...+++++.+|+++..+. +|
T Consensus       186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD  263 (343)
T 2pjd_A          186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD  263 (343)
T ss_dssp             HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred             HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence            44556564  23456999999999999999999999999999999 677887764    233577899999875554 99


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      +|+.
T Consensus       264 ~Iv~  267 (343)
T 2pjd_A          264 MIIS  267 (343)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9986

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.56  E-value=8.5e-08  Score=73.77  Aligned_cols=63  Identities=16%  Similarity=0.190  Sum_probs=54.2

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-P-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p-~-~D~~~l  208 (209)
                      ..+|||||||+|.++..++++  +.+++++|. +.+++.+++...+++++.+|+.+ +++ . +|+|++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  108 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLA  108 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEe
Confidence            689999999999999999998  558999999 78888888666789999999987 554 3 899875

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.55  E-value=9.9e-08  Score=74.77  Aligned_cols=67  Identities=13%  Similarity=0.183  Sum_probs=55.3

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CCC------CCc
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AIS------PAD  204 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~p------~~D  204 (209)
                      .+..+|||||||+|..+..+++..| +.+++.+|+ |.+++.|++      ..++|+++.+|+.+   .++      .+|
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            4678999999999999999999875 889999999 788887775      34689999999754   233      389


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      ++++
T Consensus       137 ~V~~  140 (221)
T 3u81_A          137 MVFL  140 (221)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9986

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.55  E-value=2.8e-07  Score=71.22  Aligned_cols=74  Identities=18%  Similarity=0.282  Sum_probs=58.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC---
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---  201 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p---  201 (209)
                      ..+++.++  ..+..+|||||||+|.++..+++.  ..+++++|. +.+++.|++     ...+++++.+|+.+..+   
T Consensus        67 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  142 (210)
T 3lbf_A           67 ARMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARA  142 (210)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCC
Confidence            33445555  566789999999999999999999  678999999 788887764     23589999999988543   


Q ss_pred             CCcEEEe
Q 046346          202 PADAVVL  208 (209)
Q Consensus       202 ~~D~~~l  208 (209)
                      .+|+++.
T Consensus       143 ~~D~i~~  149 (210)
T 3lbf_A          143 PFDAIIV  149 (210)
T ss_dssp             CEEEEEE
T ss_pred             CccEEEE
Confidence            2899986

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.55  E-value=2.8e-07  Score=73.35  Aligned_cols=76  Identities=22%  Similarity=0.326  Sum_probs=62.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhcccC------CCCeEEEEccCCCC-CC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLESD------LVNLKYVGGDMFKA-IS  201 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~------~~ri~~~~gD~~~~-~p  201 (209)
                      ..++..++  .....+|||+|||+|.++..+++. .|..+++++|. +.+++.|++.      .+++++..+|+.+. ++
T Consensus        86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~  163 (258)
T 2pwy_A           86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE  163 (258)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred             HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence            34556565  567789999999999999999999 78999999998 7888877641      36899999999874 66


Q ss_pred             C--CcEEEe
Q 046346          202 P--ADAVVL  208 (209)
Q Consensus       202 ~--~D~~~l  208 (209)
                      .  +|+|++
T Consensus       164 ~~~~D~v~~  172 (258)
T 2pwy_A          164 EAAYDGVAL  172 (258)
T ss_dssp             TTCEEEEEE
T ss_pred             CCCcCEEEE
Confidence            4  899975

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.54  E-value=1.4e-07  Score=74.11  Aligned_cols=65  Identities=11%  Similarity=0.154  Sum_probs=55.1

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCC--CC--C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA--IS--P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~--~p--~-~D~~~l  208 (209)
                      ....+|||||||+|.++..++++  ..+++++|+ +.+++.+++...+++++.+|+.+.  ++  . +|+|+.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~  117 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVS  117 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEe
Confidence            45689999999999999999998  568999999 788888886677899999999764  33  2 899875

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.54  E-value=3.8e-07  Score=76.43  Aligned_cols=75  Identities=17%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCC-C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-P  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p-~  202 (209)
                      ..+.+.+.  ..+..+|||||||+|.++..++++ +..+++++|..++++.|++      ..++|+++.+|+.+ ++| .
T Consensus        54 ~~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  130 (340)
T 2fyt_A           54 DFIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE  130 (340)
T ss_dssp             HHHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred             HHHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence            34444444  456789999999999999999987 4568999999768877764      23799999999987 566 3


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|+|+.
T Consensus       131 ~~D~Ivs  137 (340)
T 2fyt_A          131 KVDVIIS  137 (340)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence             899974

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.54  E-value=2.9e-07  Score=71.46  Aligned_cols=75  Identities=17%  Similarity=0.212  Sum_probs=59.4

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC---
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---  201 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p---  201 (209)
                      .+++.+.  .....+|||||||+|.++..+++.. |+.+++++|. +.+++.+++     ..+++++..+|+..+++   
T Consensus        68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred             HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence            3444444  4567899999999999999999998 7789999999 778877764     23579999999976654   


Q ss_pred             CCcEEEe
Q 046346          202 PADAVVL  208 (209)
Q Consensus       202 ~~D~~~l  208 (209)
                      .+|+++.
T Consensus       146 ~fD~v~~  152 (215)
T 2yxe_A          146 PYDRIYT  152 (215)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEE
Confidence            2899875

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.54  E-value=2.1e-07  Score=78.21  Aligned_cols=67  Identities=16%  Similarity=0.158  Sum_probs=56.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-P-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p-~-~D~~~l  208 (209)
                      .....+|||||||+|.++..++++ +..+++++|..++++.|++      ..++|+++.+|+.+ ++| . +|+|+.
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis  139 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS  139 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEE
Confidence            345689999999999999999998 6679999999778877764      35679999999988 676 3 999974

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.54  E-value=3.4e-07  Score=69.80  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=57.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP-  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~-  202 (209)
                      +.+++.++  .....+|||||||+|.++..++++  +.+++++|. +.+++.+++     ...+++++.+|+.+ +.+. 
T Consensus        22 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~   97 (199)
T 2xvm_A           22 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ   97 (199)
T ss_dssp             HHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred             HHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence            34556555  445679999999999999999998  668999999 778887764     23479999999977 4444 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+++.
T Consensus        98 ~D~v~~  103 (199)
T 2xvm_A           98 YDFILS  103 (199)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            899875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.53  E-value=1e-07  Score=76.66  Aligned_cols=64  Identities=8%  Similarity=-0.062  Sum_probs=52.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C---------------------CCCeEEEEccCCC-
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D---------------------LVNLKYVGGDMFK-  198 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~---------------------~~ri~~~~gD~~~-  198 (209)
                      ...+|||||||+|..+..|+++  +.+++++|+ +.+++.|++ .                     ..+|+|+.+|+++ 
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            5689999999999999999998  568999999 788887753 1                     2689999999998 


Q ss_pred             CCC--C-CcEEEe
Q 046346          199 AIS--P-ADAVVL  208 (209)
Q Consensus       199 ~~p--~-~D~~~l  208 (209)
                      +.+  . +|+|+.
T Consensus       146 ~~~~~~~FD~V~~  158 (252)
T 2gb4_A          146 PRANIGKFDRIWD  158 (252)
T ss_dssp             GGGCCCCEEEEEE
T ss_pred             CcccCCCEEEEEE
Confidence            332  3 999974

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.53  E-value=1e-07  Score=75.67  Aligned_cols=67  Identities=27%  Similarity=0.360  Sum_probs=55.1

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CC----CC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI----SP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~----p~-~D~~~l  208 (209)
                      ....+|||||||+|..+..+++..|+.+++++|. +.+++.|++     ...+|+++.+|+.+ +.    +. +|+|+.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            4568999999999999999999999999999999 778877764     23469999999865 32    23 899875

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.53  E-value=1.8e-07  Score=75.13  Aligned_cols=67  Identities=18%  Similarity=0.363  Sum_probs=57.3

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ....+|||||||+|.++..+++++|..+++++|. +.+++.|++...+++++.+|+.+ +++.  +|+++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  154 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR  154 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEE
Confidence            4568999999999999999999999999999999 78888887666789999999876 4443  899874

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.53  E-value=1.3e-07  Score=75.90  Aligned_cols=67  Identities=13%  Similarity=0.175  Sum_probs=55.9

Q ss_pred             cc-CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---CC-C-CcEEE
Q 046346          141 FE-GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---IS-P-ADAVV  207 (209)
Q Consensus       141 ~~-~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~p-~-~D~~~  207 (209)
                      .. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.|++      ..+|++++.+|+.+.   ++ . +|+|+
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            45 6789999999999999999999887 9999999 788887764      356899999999872   33 3 89998


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      .
T Consensus       125 ~  125 (259)
T 3lpm_A          125 C  125 (259)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.53  E-value=1.2e-07  Score=72.74  Aligned_cols=68  Identities=15%  Similarity=0.196  Sum_probs=55.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-C--CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A--ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~--~p~-~D~~~l  208 (209)
                      .....+|||+|||+|.++..+++++ |..+++++|+ +.+++.|++      ..++++++.+|+.+ +  .+. +|+++.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            3456899999999999999999996 7789999999 788887775      14689999999865 1  233 899874

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.53  E-value=1.7e-07  Score=77.39  Aligned_cols=76  Identities=17%  Similarity=0.177  Sum_probs=60.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-C--C--
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-A--I--  200 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~--~--  200 (209)
                      ..+++.+.  .....+|||+|||+|.++..+++++|+.+++++|+ |.+++.|++    ..+|++++.+||.+ +  +  
T Consensus        16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~   93 (301)
T 1m6y_A           16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   93 (301)
T ss_dssp             HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence            44555555  45668999999999999999999999999999999 788888775    23799999999865 1  1  


Q ss_pred             ---CCCcEEEe
Q 046346          201 ---SPADAVVL  208 (209)
Q Consensus       201 ---p~~D~~~l  208 (209)
                         ..+|.+++
T Consensus        94 ~g~~~~D~Vl~  104 (301)
T 1m6y_A           94 LGIEKVDGILM  104 (301)
T ss_dssp             TTCSCEEEEEE
T ss_pred             cCCCCCCEEEE
Confidence               24788775

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.53  E-value=7.5e-08  Score=75.35  Aligned_cols=68  Identities=15%  Similarity=0.093  Sum_probs=55.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C------CCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SPA  203 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~------p~~  203 (209)
                      ..+..+|||||||+|..+..+++++| +.+++++|. +.+++.|++      ..++++++.+|+.+.   +      ..+
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            34568999999999999999999998 889999999 788887764      346899999998652   2      238


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |++++
T Consensus       142 D~v~~  146 (225)
T 3tr6_A          142 DLIYI  146 (225)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99885

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.52  E-value=1.1e-07  Score=76.40  Aligned_cols=67  Identities=22%  Similarity=0.214  Sum_probs=54.8

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CC----CC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI----SP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~----p~-~D~~~l  208 (209)
                      ....+|||||||+|..+..++..+|+.+++++|. +.+++.+++     ...+|+++.+|+.+ +.    +. +|+|+.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence            3568999999999999999999999999999998 677777664     23469999999865 22    23 899874

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.52  E-value=3e-07  Score=75.21  Aligned_cols=75  Identities=23%  Similarity=0.387  Sum_probs=59.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------CCCeEEEEccCCC-CCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------LVNLKYVGGDMFK-AIS  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~------~~ri~~~~gD~~~-~~p  201 (209)
                      ...+++.++  .....+|||||||+|.++..++++..  +++++|+ +.+++.+++.      .++++++.+|+.+ ++|
T Consensus        17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~   92 (285)
T 1zq9_A           17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   92 (285)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence            455566665  55678999999999999999999954  7889999 7788777641      2589999999987 677


Q ss_pred             CCcEEEe
Q 046346          202 PADAVVL  208 (209)
Q Consensus       202 ~~D~~~l  208 (209)
                      .+|+++.
T Consensus        93 ~fD~vv~   99 (285)
T 1zq9_A           93 FFDTCVA   99 (285)
T ss_dssp             CCSEEEE
T ss_pred             hhcEEEE
Confidence            7898864

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.51  E-value=2e-07  Score=75.63  Aligned_cols=64  Identities=19%  Similarity=0.299  Sum_probs=52.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-C-CC-C-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A-IS-P-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~-~p-~-~D~~~l  208 (209)
                      ...+|||||||+|.++..++++  ..+++++|+ +.+++.|++      ..++++++.+|+.+ + ++ . +|+|+.
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~  142 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILF  142 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEE
Confidence            4579999999999999999998  668999999 788887774      22789999999977 2 33 3 899975

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.51  E-value=2.4e-07  Score=78.70  Aligned_cols=67  Identities=16%  Similarity=0.206  Sum_probs=56.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhcccC---------C----CCeEEEEccCCC-------C
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLESD---------L----VNLKYVGGDMFK-------A  199 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~---------~----~ri~~~~gD~~~-------~  199 (209)
                      ....+|||||||+|.++..+++.+ |..+++++|+ +.+++.|++.         .    .+++|+.+|+.+       +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            356899999999999999999997 8899999999 7888887742         2    699999999987       5


Q ss_pred             CCC--CcEEEe
Q 046346          200 ISP--ADAVVL  208 (209)
Q Consensus       200 ~p~--~D~~~l  208 (209)
                      +|.  +|+|+.
T Consensus       162 ~~~~~fD~V~~  172 (383)
T 4fsd_A          162 VPDSSVDIVIS  172 (383)
T ss_dssp             CCTTCEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            553  899975

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.51  E-value=5.1e-08  Score=77.49  Aligned_cols=65  Identities=17%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC---CCCC--CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK---AISP--ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~---~~p~--~D~~~  207 (209)
                      ....+|||||||+|..+..+++..|. +++++|+ |.+++.|++    ...+++++.+|+.+   ++|.  +|.++
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEE
Confidence            45689999999999999999988875 7899999 889988875    35678888888653   4553  78775

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.51  E-value=1.8e-07  Score=71.93  Aligned_cols=65  Identities=23%  Similarity=0.338  Sum_probs=54.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p~-~D~~~l  208 (209)
                      ....+|||+|||+|.++..+++. +..+++++|+ +.+++.|++...+++++.+|+.+ +|. +|++++
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~  116 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIM  116 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEE
Confidence            35689999999999999999987 5567999999 78888887643489999999976 455 899875

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.51  E-value=2.7e-07  Score=73.57  Aligned_cols=58  Identities=22%  Similarity=0.353  Sum_probs=48.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------------CCCCeEEEEccCCCC
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------------DLVNLKYVGGDMFKA  199 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------------~~~ri~~~~gD~~~~  199 (209)
                      ....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++             ...+++++.+|+++.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~  119 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF  119 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH
Confidence            3567999999999999999999999999999998 677776643             125899999999873

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.50  E-value=5e-07  Score=75.87  Aligned_cols=75  Identities=15%  Similarity=0.150  Sum_probs=58.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISP-  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~-  202 (209)
                      ..+.+.+.  ..+..+|||||||+|.++..++++ +..+++++|..++++.|++      ..++|+++.+|+.+ ++|. 
T Consensus        40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~  116 (348)
T 2y1w_A           40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  116 (348)
T ss_dssp             HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence            34455554  445689999999999999999886 6678999999767776654      34789999999987 5665 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+|+.
T Consensus       117 ~D~Ivs  122 (348)
T 2y1w_A          117 VDIIIS  122 (348)
T ss_dssp             EEEEEE
T ss_pred             eeEEEE
Confidence            899874

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.50  E-value=5.2e-07  Score=74.35  Aligned_cols=74  Identities=16%  Similarity=0.195  Sum_probs=58.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP-  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~-  202 (209)
                      ..+++.++  ..+..+|||||||+|.++..+++++ +.+++++|+ +.+++.|++      ..++++++.+|+.+ +|. 
T Consensus        80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~  155 (318)
T 2fk8_A           80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP  155 (318)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred             HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence            44555555  5567899999999999999999997 569999999 788887764      23679999999854 455 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+|+.
T Consensus       156 fD~v~~  161 (318)
T 2fk8_A          156 VDRIVS  161 (318)
T ss_dssp             CSEEEE
T ss_pred             cCEEEE
Confidence            999874

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.50  E-value=3e-07  Score=72.67  Aligned_cols=63  Identities=21%  Similarity=0.416  Sum_probs=51.7

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC---CCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~---~~p~--~D~~~l  208 (209)
                      +.+..+|||||||+|.++..++++  +.+++++|+ +.+++.+++   +++++.+|+.+   ++|.  +|+|+.
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~---~~~~~~~d~~~~~~~~~~~~fD~i~~  107 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEG---KFNVVKSDAIEYLKSLPDKYLDGVMI  107 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHT---TSEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHh---hcceeeccHHHHhhhcCCCCeeEEEE
Confidence            456689999999999999999998  456899999 788888773   38999999876   5553  999975

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.49  E-value=1.4e-07  Score=70.99  Aligned_cols=66  Identities=12%  Similarity=0.059  Sum_probs=53.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---CCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---ISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~p~-~D~~~l  208 (209)
                      ....+|||+|||+|.++..++++ +..+++++|+ +.+++.|++      ..++++++.+|+.+.   .+. +|++++
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~  106 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL  106 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEE
Confidence            35679999999999999999988 6779999999 788887774      235899999998762   233 899875

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.49  E-value=2.4e-07  Score=72.95  Aligned_cols=64  Identities=9%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             CeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CC-CCeEEEEccCCC---CC-CC-CcEEEe
Q 046346          145 NSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFK---AI-SP-ADAVVL  208 (209)
Q Consensus       145 ~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~-~ri~~~~gD~~~---~~-p~-~D~~~l  208 (209)
                      .+|||||||+|..+..+++.+| +.+++.+|+ +.+++.|++      .. +||+++.+|+.+   .+ +. +|++++
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            3999999999999999999986 789999999 788887764      23 689999999876   34 33 999986

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.48  E-value=3e-07  Score=72.37  Aligned_cols=64  Identities=16%  Similarity=0.226  Sum_probs=52.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      +..+|||||||+|.++..++++  ..+++++|. +.+++.+++    ...+++++.+|+.+ +.+. +|+|++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  107 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEE
Confidence            5689999999999999999998  457999999 788887774    22389999999977 4554 899986

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.48  E-value=3.3e-07  Score=71.06  Aligned_cols=66  Identities=14%  Similarity=0.280  Sum_probs=53.8

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAIS-P-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~~~p-~-~D~~~l  208 (209)
                      .....+|||||||+|.++..++++.  .+++++|+ +.+++.+++   ..++++++.+|+.+..| . +|+++.
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  120 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVV  120 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEE
Confidence            3456899999999999999999986  47899999 788888775   23589999999987333 3 899975

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.48  E-value=3.9e-07  Score=71.14  Aligned_cols=67  Identities=15%  Similarity=0.141  Sum_probs=52.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH----HhhcccCCCCeEEEEccCCCC-----CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHV----VNGLESDLVNLKYVGGDMFKA-----ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v----~~~a~~~~~ri~~~~gD~~~~-----~p~-~D~~~l  208 (209)
                      ..+..+|||||||+|.++..+++..|..+++++|+ |.+    .+.++ ...++.++.+|..++     ++. +|+++.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~-~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  132 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR-ERNNIIPLLFDASKPWKYSGIVEKVDLIYQ  132 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH-HCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh-cCCCeEEEEcCCCCchhhcccccceeEEEE
Confidence            45667999999999999999999998778999999 544    34444 245799999998763     334 899875

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.48  E-value=6.5e-08  Score=72.32  Aligned_cols=70  Identities=16%  Similarity=0.235  Sum_probs=56.6

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      +++.++  ..+..+|||||||+|.++..+++++.  +++++|+ +.+++.+++..+++++..+|  .+++.  +|+++.
T Consensus         9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~   81 (170)
T 3i9f_A            9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILF   81 (170)
T ss_dssp             THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEE
T ss_pred             HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEE
Confidence            344444  55678999999999999999999984  8999999 78888887657799999999  44443  899875

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.47  E-value=2.9e-07  Score=72.91  Aligned_cols=66  Identities=20%  Similarity=0.278  Sum_probs=53.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEEccCCC-CCC-------CCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS-------PADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~~ri~~~~gD~~~-~~p-------~~D~~~l  208 (209)
                      .....+|||||||+|.++..++++++  +++++|. +.+++.+++  ...+++++.+|+.+ +.+       .+|+++.
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~  130 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM  130 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEE
Confidence            34568999999999999999999998  7889999 788888775  24589999999987 222       1688764

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.47  E-value=5.3e-07  Score=74.19  Aligned_cols=75  Identities=15%  Similarity=0.254  Sum_probs=59.9

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCC--
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP--  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~--  202 (209)
                      ...+++.++  .....+|||||||+|.++..++++  ..+++++|+ +.+++.+++   ..++++++.+|+.+ ++|.  
T Consensus        39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred             HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence            455566665  556789999999999999999998  467899999 677777764   24789999999998 6665  


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+++.
T Consensus       115 fD~Iv~  120 (295)
T 3gru_A          115 FNKVVA  120 (295)
T ss_dssp             CSEEEE
T ss_pred             ccEEEE
Confidence            888763

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.47  E-value=4.7e-07  Score=73.43  Aligned_cols=74  Identities=18%  Similarity=0.221  Sum_probs=58.0

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~  203 (209)
                      ..+++.++  .....+|||||||+|.++..++++  ..+++++|. +.+++.+++    ...+++++.+|+.+ +.+. +
T Consensus       110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f  185 (286)
T 3m70_A          110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY  185 (286)
T ss_dssp             HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred             HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence            34455555  346789999999999999999998  568999999 777877764    22389999999987 3444 9


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+|+.
T Consensus       186 D~i~~  190 (286)
T 3m70_A          186 DFIVS  190 (286)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99985

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.47  E-value=5.4e-07  Score=75.05  Aligned_cols=67  Identities=18%  Similarity=0.243  Sum_probs=54.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-P-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p-~-~D~~~l  208 (209)
                      ..+..+|||||||+|.++..++++ +..+++++|..++++.|++      ..++|+++.+|+.+ ++| . +|+++.
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs  111 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEE
Confidence            345689999999999999999887 5568999999777777664      35789999999987 566 3 899874

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.46  E-value=3.2e-07  Score=72.26  Aligned_cols=64  Identities=27%  Similarity=0.361  Sum_probs=53.1

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ....+|||||||+|.++..++++   .+++++|+ +.+++.|++    ...+++++.+|+.+ +.+. +|++++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  102 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITI  102 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEE
Confidence            34589999999999999999887   78999999 788887775    24689999999977 4555 899875

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.46  E-value=2.1e-07  Score=75.81  Aligned_cols=67  Identities=19%  Similarity=0.197  Sum_probs=56.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEEccCCCC---CCC-CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFKA---ISP-ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~--------~~ri~~~~gD~~~~---~p~-~D~~~  207 (209)
                      +...+|||||||+|.++..+++..|..+++++|+ |.+++.|++ .        .+|++++.+|.++-   .+. +|+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            3568999999999999999998878889999999 888888775 1        47999999998762   233 89997


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       154 ~  154 (275)
T 1iy9_A          154 V  154 (275)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.46  E-value=1.9e-07  Score=70.63  Aligned_cols=66  Identities=15%  Similarity=0.107  Sum_probs=53.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC------CC-CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI------SP-ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~------p~-~D~~~  207 (209)
                      ....+|||+|||+|.++..+++ .+..+++++|+ +.+++.|++      ..++++++.+|+.+..      +. +|+++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  121 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence            3567999999999999999888 56678999999 788887774      2368999999997722      33 89987


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       122 ~  122 (187)
T 2fhp_A          122 L  122 (187)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.46  E-value=2.7e-07  Score=75.12  Aligned_cols=66  Identities=17%  Similarity=0.056  Sum_probs=55.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC-CC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-SP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~-p~-~D~~~l  208 (209)
                      .+..+|||+|||+|.++..+++..+. +++++|+ |.+++.|++      ..++++++.+|+++.. +. +|++++
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~  198 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM  198 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEE
Confidence            45689999999999999999999887 8999999 788887764      3467999999998843 33 899876

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.46  E-value=6.6e-07  Score=70.14  Aligned_cols=74  Identities=19%  Similarity=0.234  Sum_probs=57.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---CCCeEEEEccCCCCCC--C-C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---LVNLKYVGGDMFKAIS--P-A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~~ri~~~~gD~~~~~p--~-~  203 (209)
                      ..+++.+.  ..+..+|||||||+|.++..+++..  .+++++|. +.+++.+++.   ..+++++.+|+.+.++  . +
T Consensus        60 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f  135 (231)
T 1vbf_A           60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY  135 (231)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence            34445554  5567899999999999999999997  68999998 7888877751   2289999999987444  2 8


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+++.
T Consensus       136 D~v~~  140 (231)
T 1vbf_A          136 DRVVV  140 (231)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99875

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.46  E-value=1.8e-07  Score=73.75  Aligned_cols=63  Identities=19%  Similarity=0.239  Sum_probs=51.4

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      ..+|||||||+|.++..+++  +..+++++|+ +.+++.|++      ...+++++.+|+.+..|.  +|+|+.
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~  138 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFD  138 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEE
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEE
Confidence            35999999999999999976  5778999999 788887775      235799999999884343  899974

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.46  E-value=7.8e-08  Score=76.79  Aligned_cols=67  Identities=16%  Similarity=0.212  Sum_probs=55.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C-----CC-Cc
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I-----SP-AD  204 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~-----p~-~D  204 (209)
                      .+..+|||||||+|..+..+++..| +.+++.+|+ |.+++.|++      ..++|+++.+|+.+.   +     +. +|
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            4578999999999999999999997 789999999 677777664      346999999998762   2     23 89


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      ++++
T Consensus       139 ~V~~  142 (242)
T 3r3h_A          139 FIFI  142 (242)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9875

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.45  E-value=5.2e-07  Score=68.75  Aligned_cols=65  Identities=11%  Similarity=0.069  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---C-CC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I-SP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~-p~-~D~~~l  208 (209)
                      ...+|||+|||+|.++..++++ +..+++++|+ +.+++.|++     ..++++++.+|+.+.   + +. +|++++
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~  119 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLA  119 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEE
Confidence            5689999999999999988774 5668999999 788888775     126899999998762   3 23 999986

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.45  E-value=3.9e-07  Score=76.53  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=60.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-  201 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p-  201 (209)
                      ..++....  +.+..+|||+|||+|.++++++... |+.+++++|+ |.+++.|++     ..++|+++.+|+.+ +.+ 
T Consensus       193 ~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~  270 (354)
T 3tma_A          193 QALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF  270 (354)
T ss_dssp             HHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred             HHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence            33444445  5677899999999999999999998 9999999999 788888774     12389999999987 332 


Q ss_pred             -CCcEEEe
Q 046346          202 -PADAVVL  208 (209)
Q Consensus       202 -~~D~~~l  208 (209)
                       .+|+++.
T Consensus       271 ~~~D~Ii~  278 (354)
T 3tma_A          271 PEVDRILA  278 (354)
T ss_dssp             CCCSEEEE
T ss_pred             CCCCEEEE
Confidence             3799875

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.44  E-value=6.3e-07  Score=72.39  Aligned_cols=76  Identities=14%  Similarity=0.224  Sum_probs=60.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc----C----CCCeEEEEccCCC-C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES----D----LVNLKYVGGDMFK-A  199 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~----~----~~ri~~~~gD~~~-~  199 (209)
                      ..++..++  .....+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++    .    .++++++.+|+.+ +
T Consensus        89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            34555555  566789999999999999999996 68899999999 788877764    1    3689999999987 3


Q ss_pred             CCC--CcEEEe
Q 046346          200 ISP--ADAVVL  208 (209)
Q Consensus       200 ~p~--~D~~~l  208 (209)
                      ++.  +|+|++
T Consensus       167 ~~~~~~D~v~~  177 (280)
T 1i9g_A          167 LPDGSVDRAVL  177 (280)
T ss_dssp             CCTTCEEEEEE
T ss_pred             CCCCceeEEEE
Confidence            443  899875

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.43  E-value=6.4e-07  Score=71.41  Aligned_cols=64  Identities=11%  Similarity=0.083  Sum_probs=54.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ..+.+|||||||.|.++..+.   |..+.+++|+ +.+++.++.    ...+.++..+|+.. +.|+ +|++++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLl  174 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALI  174 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHH
Confidence            568899999999999999988   9999999999 788887775    36788999999998 4555 999964

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.42  E-value=5.9e-07  Score=82.67  Aligned_cols=67  Identities=15%  Similarity=0.224  Sum_probs=55.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----------CCCCeEEEEccCCC-CCC-C-CcE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----------DLVNLKYVGGDMFK-AIS-P-ADA  205 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----------~~~ri~~~~gD~~~-~~p-~-~D~  205 (209)
                      .+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++           ...+|+|+.+|+.+ +.+ . +|+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            467899999999999999999998 5679999999 788888764           23589999999987 444 2 999


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |+.
T Consensus       800 VV~  802 (950)
T 3htx_A          800 GTC  802 (950)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.42  E-value=6.2e-07  Score=76.14  Aligned_cols=67  Identities=15%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      .....+|||||||+|.++..++++. ..+++++|...+++.|++      ..++|+++.+|+.+ ++|. +|+|+.
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~  135 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS  135 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEE
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEE
Confidence            4467899999999999999999984 348999999877777764      35789999999977 5655 999974

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.42  E-value=1.9e-07  Score=74.02  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=49.1

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK  198 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~  198 (209)
                      ..+..+|||||||+|..+..+++.+| ..+++++|. +.+++.|++      ..++++++.+|+.+
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE  123 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            34678999999999999999999998 689999999 778877764      23579999999865

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.42  E-value=6.5e-07  Score=68.61  Aligned_cols=61  Identities=16%  Similarity=0.201  Sum_probs=47.9

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCC--CCeEEEeechHHHhhcccCCCCeEEEEccCCCC
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP--KLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA  199 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P--~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~  199 (209)
                      +.+.+. .+.+..+|||||||+|.++..+++++|  ..+++++|+.++.     ...+++++.+|+.+.
T Consensus        13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----~~~~v~~~~~d~~~~   75 (201)
T 2plw_A           13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----PIPNVYFIQGEIGKD   75 (201)
T ss_dssp             HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----CCTTCEEEECCTTTT
T ss_pred             HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----CCCCceEEEccccch
Confidence            444443 134567999999999999999999998  6899999996531     246799999999873

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.42  E-value=1.6e-07  Score=74.31  Aligned_cols=66  Identities=17%  Similarity=0.142  Sum_probs=52.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC---CCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK---AISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~---~~p~--~D~~~l  208 (209)
                      ....+|||||||+|.++..+++..+. +++++|+ +.+++.|++    ...+++++.+|+.+   +++.  +|+|+.
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence            35679999999999999999665543 8899999 788887775    24689999999865   4553  899975

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.41  E-value=7e-07  Score=69.95  Aligned_cols=68  Identities=21%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCCC-----CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA-----ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~~-----~p~-~D~~~l  208 (209)
                      ..+..+|||+|||+|.++..++++. |..+++++|. +.+++.+++   ..++++++.+|+.+.     ++. +|++++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence            4466799999999999999999985 6789999999 555554432   237899999999872     233 899875

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.41  E-value=1.7e-07  Score=69.74  Aligned_cols=64  Identities=13%  Similarity=0.064  Sum_probs=52.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCC-------CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS-------PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p-------~~D~~~l  208 (209)
                      ...+|||+|||+|.++..++++.++  ++++|+ +.+++.|++    ..-+++++.+|+.+..+       .+|++++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~  116 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEE
Confidence            5689999999999999999999887  999999 788887774    11289999999876322       4898875

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.41  E-value=2.3e-07  Score=74.29  Aligned_cols=68  Identities=15%  Similarity=0.122  Sum_probs=56.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C------CC-
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SP-  202 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~------p~-  202 (209)
                      ..+..+|||||||+|..+..+++..| +.+++.+|+ +.+++.|++      ..++|+++.+|..+-   +      +. 
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            34578999999999999999999998 789999999 788887764      246899999998752   2      33 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|++++
T Consensus       157 fD~V~~  162 (247)
T 1sui_A          157 YDFIFV  162 (247)
T ss_dssp             BSEEEE
T ss_pred             EEEEEE
Confidence            999986

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.41  E-value=1e-06  Score=73.35  Aligned_cols=76  Identities=18%  Similarity=0.295  Sum_probs=59.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhcccC----------------CCCeEEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLESD----------------LVNLKYV  192 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~----------------~~ri~~~  192 (209)
                      ..++..++  .....+|||||||+|.++..+++. .|+.+++.+|+ |.+++.|++.                .++++++
T Consensus        95 ~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~  172 (336)
T 2b25_A           95 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  172 (336)
T ss_dssp             HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence            34455555  556789999999999999999998 68899999999 7778777641                2689999


Q ss_pred             EccCCCC---CCC--CcEEEe
Q 046346          193 GGDMFKA---ISP--ADAVVL  208 (209)
Q Consensus       193 ~gD~~~~---~p~--~D~~~l  208 (209)
                      .+|+.+.   ++.  +|+|++
T Consensus       173 ~~d~~~~~~~~~~~~fD~V~~  193 (336)
T 2b25_A          173 HKDISGATEDIKSLTFDAVAL  193 (336)
T ss_dssp             ESCTTCCC-------EEEEEE
T ss_pred             ECChHHcccccCCCCeeEEEE
Confidence            9999873   343  899885

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.41  E-value=7e-07  Score=75.83  Aligned_cols=64  Identities=19%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~  207 (209)
                      ..++|||||||+|.++...+++.. -+++.+|..++++.|++      ..++|+++.+|..+ ++|. +|+++
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dviv  154 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIV  154 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEE
Confidence            457999999999999987777643 37899999777777664      57899999999987 6786 99986

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.41  E-value=1.4e-06  Score=68.81  Aligned_cols=73  Identities=15%  Similarity=0.184  Sum_probs=58.7

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC-CC-
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-SP-  202 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~-p~-  202 (209)
                      .++..++  .....+|||+|||+|.++..++++  ..+++++|. +.+++.|++      ..++++++.+|+.+.. +. 
T Consensus        82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  157 (248)
T 2yvl_A           82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG  157 (248)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred             HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence            4445554  556789999999999999999999  779999998 777877764      2378999999998865 43 


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|++++
T Consensus       158 ~~D~v~~  164 (248)
T 2yvl_A          158 IFHAAFV  164 (248)
T ss_dssp             CBSEEEE
T ss_pred             cccEEEE
Confidence             899875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.41  E-value=8.5e-07  Score=73.42  Aligned_cols=76  Identities=17%  Similarity=0.365  Sum_probs=59.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC--
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--  201 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p--  201 (209)
                      ..+++.+.  ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.|++     ...+++++.+|+.+..+  
T Consensus        65 ~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~  142 (317)
T 1dl5_A           65 ALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF  142 (317)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             HHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC
Confidence            33445554  55678999999999999999999988 488999999 788877764     13569999999987433  


Q ss_pred             -CCcEEEe
Q 046346          202 -PADAVVL  208 (209)
Q Consensus       202 -~~D~~~l  208 (209)
                       .+|+|+.
T Consensus       143 ~~fD~Iv~  150 (317)
T 1dl5_A          143 SPYDVIFV  150 (317)
T ss_dssp             CCEEEEEE
T ss_pred             CCeEEEEE
Confidence             2899875

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.40  E-value=6.9e-07  Score=68.88  Aligned_cols=64  Identities=22%  Similarity=0.308  Sum_probs=51.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC----CCCeEEEEccCCCCCCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD----LVNLKYVGGDMFKAISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----~~ri~~~~gD~~~~~p~-~D~~~l  208 (209)
                      ...+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++.    .-+++++.+|+.+ +|. +|++++
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~  118 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIM  118 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEE
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEE
Confidence            467999999999999999998843 37999999 7888877641    1289999999976 454 899875

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.39  E-value=8.8e-07  Score=69.16  Aligned_cols=66  Identities=15%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC----------CCCeEEEEccCCC-CCCC--CcEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD----------LVNLKYVGGDMFK-AISP--ADAV  206 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~----------~~ri~~~~gD~~~-~~p~--~D~~  206 (209)
                      +....+|||||||+|.++..++++  ..+++++|+ +.+++.+++.          ..++++..+|+.+ +++.  +|++
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  105 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA  105 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence            346789999999999999999998  668999999 7788777641          2368999999987 5543  8998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       106 ~~  107 (235)
T 3sm3_A          106 VM  107 (235)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.39  E-value=8e-07  Score=72.23  Aligned_cols=72  Identities=18%  Similarity=0.187  Sum_probs=54.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEEccCCC-CCC---CC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS---PA  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~~ri~~~~gD~~~-~~p---~~  203 (209)
                      ..+++..+  .... +|||||||+|.++..++++.  .+++++|+ +.+++.+++  ...+++++.+|+++ +++   .+
T Consensus        37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~  111 (271)
T 3fut_A           37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG  111 (271)
T ss_dssp             HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred             HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence            44555555  4455 99999999999999999986  57888998 777877765  24689999999987 454   35


Q ss_pred             cEEE
Q 046346          204 DAVV  207 (209)
Q Consensus       204 D~~~  207 (209)
                      |.++
T Consensus       112 ~~iv  115 (271)
T 3fut_A          112 SLLV  115 (271)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            5543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.39  E-value=1.8e-07  Score=72.57  Aligned_cols=67  Identities=19%  Similarity=0.167  Sum_probs=54.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC--C-CCCCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-ISPADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~--~-~p~~D~~~l  208 (209)
                      .+..+|||||||+|..+..+++.+| +.+++.+|+ +.+++.|++      ..++++++.+|+.+  + .+.+|++++
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  132 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFM  132 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEE
Confidence            3568999999999999999999998 889999999 788887764      34689999999875  2 222898875

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.39  E-value=2.3e-07  Score=75.43  Aligned_cols=75  Identities=15%  Similarity=0.147  Sum_probs=57.2

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC-
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK-  198 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~-  198 (209)
                      .+.+.+.++  ..+..+|||||||+|.++..++++.+  +++++|+ +.+++.|++         ...++.+..+|+.+ 
T Consensus        46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~  121 (293)
T 3thr_A           46 KAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL  121 (293)
T ss_dssp             HHHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred             HHHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhC
Confidence            344445554  44678999999999999999999954  8999999 788887753         12578899999877 


Q ss_pred             C---CC-C-CcEEEe
Q 046346          199 A---IS-P-ADAVVL  208 (209)
Q Consensus       199 ~---~p-~-~D~~~l  208 (209)
                      +   ++ . +|+|+.
T Consensus       122 ~~~~~~~~~fD~V~~  136 (293)
T 3thr_A          122 DKDVPAGDGFDAVIC  136 (293)
T ss_dssp             HHHSCCTTCEEEEEE
T ss_pred             ccccccCCCeEEEEE
Confidence            4   34 3 999975

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.38  E-value=2.8e-07  Score=72.20  Aligned_cols=68  Identities=16%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C------CCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SPA  203 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~------p~~  203 (209)
                      ..+..+|||||||+|..+..+++..| ..+++++|. +.+++.|++      ..++++++.+|+.+.   +      ..+
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            34678999999999999999999988 789999999 788877764      247899999998652   2      238


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |++++
T Consensus       147 D~v~~  151 (229)
T 2avd_A          147 DVAVV  151 (229)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99875

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.38  E-value=4.9e-07  Score=74.43  Aligned_cols=75  Identities=17%  Similarity=0.311  Sum_probs=54.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~  202 (209)
                      ...+++.++  .....+|||||||+|.++..++++  ..+++++|+ +.+++.+++     ..++++++.+|+.+ +++.
T Consensus        31 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~  106 (299)
T 2h1r_A           31 LDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK  106 (299)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence            345555555  456789999999999999999987  457999999 777877664     13689999999987 5556


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+++.
T Consensus       107 ~D~Vv~  112 (299)
T 2h1r_A          107 FDVCTA  112 (299)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            898874

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.38  E-value=6.9e-07  Score=70.51  Aligned_cols=57  Identities=16%  Similarity=0.057  Sum_probs=46.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeech--HHHhhc---cc-----CCCCeEEEEccCCC
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP--HVVNGL---ES-----DLVNLKYVGGDMFK  198 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp--~v~~~a---~~-----~~~ri~~~~gD~~~  198 (209)
                      ....+|||||||+|.++..+++++|+.+++++|+.  .+++.|   ++     ...+++|+.+|..+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~   89 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES   89 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence            45679999999999999999999999999999994  454544   43     23579999999854

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.38  E-value=9e-07  Score=69.27  Aligned_cols=68  Identities=18%  Similarity=0.235  Sum_probs=55.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hHHHhhccc-----C-----CCCeEEEEccCCCCC----
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-----PKLECTCFDL-PHVVNGLES-----D-----LVNLKYVGGDMFKAI----  200 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-----P~l~~~~~Dl-p~v~~~a~~-----~-----~~ri~~~~gD~~~~~----  200 (209)
                      ..+..+|||||||+|.++..+++..     |..+++++|. +.+++.|++     .     ..+++++.+|+.+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            4456899999999999999999987     6789999999 777877764     1     468999999998754    


Q ss_pred             C---CCcEEEe
Q 046346          201 S---PADAVVL  208 (209)
Q Consensus       201 p---~~D~~~l  208 (209)
                      +   .+|+|+.
T Consensus       158 ~~~~~fD~I~~  168 (227)
T 2pbf_A          158 KELGLFDAIHV  168 (227)
T ss_dssp             HHHCCEEEEEE
T ss_pred             ccCCCcCEEEE
Confidence            2   2899875

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.38  E-value=1.1e-06  Score=75.85  Aligned_cols=75  Identities=15%  Similarity=0.267  Sum_probs=56.3

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhc-------cc----C---CCCeEEEEccC
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGL-------ES----D---LVNLKYVGGDM  196 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a-------~~----~---~~ri~~~~gD~  196 (209)
                      .+++.+.  .....+|||||||+|.++..+++.+|..+++++|+ +.+++.|       ++    .   ..+|+++.+|-
T Consensus       233 ~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~  310 (433)
T 1u2z_A          233 DVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS  310 (433)
T ss_dssp             HHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred             HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence            3444444  55678999999999999999999999889999999 5666666       43    1   36899998854


Q ss_pred             C-CC--C----CCCcEEEe
Q 046346          197 F-KA--I----SPADAVVL  208 (209)
Q Consensus       197 ~-~~--~----p~~D~~~l  208 (209)
                      + .+  +    ..+|+|++
T Consensus       311 ~~~~~~~~~~~~~FDvIvv  329 (433)
T 1u2z_A          311 FVDNNRVAELIPQCDVILV  329 (433)
T ss_dssp             STTCHHHHHHGGGCSEEEE
T ss_pred             cccccccccccCCCCEEEE
Confidence            4 32  2    23999986

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.38  E-value=4.8e-07  Score=68.32  Aligned_cols=72  Identities=24%  Similarity=0.257  Sum_probs=56.6

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC---CC
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI---SP  202 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~---p~  202 (209)
                      +++.+.  .....+|||+|||+|.++..+++.+  .+++++|. +.+++.+++      ..+++++..+|+.+++   +.
T Consensus        25 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (192)
T 1l3i_A           25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD  100 (192)
T ss_dssp             HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence            344444  4567899999999999999999988  78999999 778877764      2268999999987633   34


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+++.
T Consensus       101 ~D~v~~  106 (192)
T 1l3i_A          101 IDIAVV  106 (192)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            899875

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.37  E-value=1e-06  Score=69.00  Aligned_cols=67  Identities=18%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccC--CCCCC-C-CcEEEe
Q 046346          141 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDM--FKAIS-P-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~--~~~~p-~-~D~~~l  208 (209)
                      ..+..+||||||| +|.++..+++.+ ..+++++|+ +.+++.|++    ...+++++.+|+  +.+++ . +|+++.
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~  129 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFS  129 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEE
Confidence            4567899999999 999999999997 788999999 788887774    223899999996  44555 3 899875

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.37  E-value=3.9e-07  Score=72.64  Aligned_cols=42  Identities=17%  Similarity=0.120  Sum_probs=37.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhccc
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~--~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      ...+|||+|||+|.++..++++  +|..+++++|+ +.+++.|+.
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~   95 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAK   95 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHH
Confidence            4579999999999999999999  88889999999 788887774

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.37  E-value=7.1e-07  Score=70.31  Aligned_cols=67  Identities=13%  Similarity=0.153  Sum_probs=52.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHH----HhhcccCCCCeEEEEccCCCC--C---CC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHV----VNGLESDLVNLKYVGGDMFKA--I---SP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v----~~~a~~~~~ri~~~~gD~~~~--~---p~-~D~~~l  208 (209)
                      +.+..+|||||||+|.++..+++++ |..+++++|+ |.+    ++.++ ...+++++.+|+.+.  +   +. +|++++
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~-~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAK-KRTNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH-HCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhh-ccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            4567899999999999999999997 7889999999 443    34444 237899999999873  2   22 899875

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.37  E-value=6e-07  Score=69.47  Aligned_cols=65  Identities=15%  Similarity=0.134  Sum_probs=51.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C-CCCeEEEEccCCC--CCC-C-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D-LVNLKYVGGDMFK--AIS-P-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~-~~ri~~~~gD~~~--~~p-~-~D~~~l  208 (209)
                      ...+|||+|||+|.++..++++.. .+++++|+ +.+++.|++    . .++++++.+|+.+  +.+ . +|++++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            457999999999999999888764 38999999 788888774    1 2589999999876  332 3 899885

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.37  E-value=1.1e-06  Score=70.10  Aligned_cols=68  Identities=12%  Similarity=0.308  Sum_probs=54.4

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p  201 (209)
                      ...+++.++  .....+|||||||+|.++..++++.  .+++++|+ +.+++.+++   ..++++++.+|+.+ +++
T Consensus        19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~   91 (244)
T 1qam_A           19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFP   91 (244)
T ss_dssp             HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCC
T ss_pred             HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcc
Confidence            345555555  4567899999999999999999997  67999999 778887765   23689999999987 555

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.37  E-value=9.2e-07  Score=68.74  Aligned_cols=84  Identities=17%  Similarity=0.279  Sum_probs=55.6

Q ss_pred             HHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccC
Q 046346          118 FNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDM  196 (209)
Q Consensus       118 f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~  196 (209)
                      |...+..+.......+++.++   .+..+|||||||+|.++..++++ + .+++++|. +.+++.+++..  .+++.+|+
T Consensus        10 y~~~~~~~~~~~~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~--~~~~~~d~   82 (230)
T 3cc8_A           10 YEEKSGHYYNAVNPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL--DHVVLGDI   82 (230)
T ss_dssp             ----------CCCHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS--SEEEESCT
T ss_pred             hhccchhHHHHHHHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC--CcEEEcch
Confidence            333333333333345555554   45689999999999999999998 5 89999999 77888777432  37889998


Q ss_pred             CC---CCC-C-CcEEEe
Q 046346          197 FK---AIS-P-ADAVVL  208 (209)
Q Consensus       197 ~~---~~p-~-~D~~~l  208 (209)
                      .+   +++ . +|++++
T Consensus        83 ~~~~~~~~~~~fD~v~~   99 (230)
T 3cc8_A           83 ETMDMPYEEEQFDCVIF   99 (230)
T ss_dssp             TTCCCCSCTTCEEEEEE
T ss_pred             hhcCCCCCCCccCEEEE
Confidence            75   344 2 899875

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.37  E-value=6.4e-07  Score=72.69  Aligned_cols=68  Identities=21%  Similarity=0.150  Sum_probs=56.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC-CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA-ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~-~p~-~D~~~l  208 (209)
                      +.+..+|||+|||+|.++..++++.+..+++++|+ |.+++.|++     ...+++++.+|+++. .+. +|++++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEE
Confidence            45668999999999999999999999889999999 788887774     235789999999874 223 899886

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.36  E-value=2e-06  Score=70.82  Aligned_cols=90  Identities=18%  Similarity=0.159  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------
Q 046346          115 NNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------  184 (209)
Q Consensus       115 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------  184 (209)
                      .+.|+..+...   ....+++.+........+|||||||+|.++..+++ .+..+++++|+ +.+++.+++         
T Consensus         9 lr~~~~~~k~~---l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~   84 (313)
T 3bgv_A            9 LRNFNNWMKSV---LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRR   84 (313)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSS
T ss_pred             hhhccHHHHHH---HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcc
Confidence            45566666542   22334443332234678999999999999999988 46779999999 788877764         


Q ss_pred             ---CCCCeEEEEccCCC-C----C--C--CCcEEEe
Q 046346          185 ---DLVNLKYVGGDMFK-A----I--S--PADAVVL  208 (209)
Q Consensus       185 ---~~~ri~~~~gD~~~-~----~--p--~~D~~~l  208 (209)
                         ...+++++.+|+.+ +    +  +  .+|+|+.
T Consensus        85 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~  120 (313)
T 3bgv_A           85 DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSC  120 (313)
T ss_dssp             CC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEE
T ss_pred             cccccceEEEEEecccccchhhhcccCCCCEEEEEE
Confidence               12379999999976 3    3  2  3899874

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.36  E-value=2.6e-07  Score=73.02  Aligned_cols=64  Identities=22%  Similarity=0.280  Sum_probs=52.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--CCCeEEEEccCCCCCC--CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--LVNLKYVGGDMFKAIS--PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~--~~ri~~~~gD~~~~~p--~~D~~~l  208 (209)
                      ...+|||||||+|.++..++++.  .+++++|+ +.+++.|++    .  .++++++.+|+.+..+  .+|+|++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  150 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFL  150 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEE
Confidence            56899999999999999999985  78999999 788887764    1  2589999999987323  3999985

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.36  E-value=4.8e-07  Score=72.90  Aligned_cols=67  Identities=18%  Similarity=0.117  Sum_probs=57.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS-P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p-~-~D~~~l  208 (209)
                      ..+.+|||||||.|-++..++..+|+.+.+.+|+ +.+++.++.    ...+.++...|+..+.| + +|++++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~  204 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLL  204 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHH
Confidence            4588999999999999999999999999999999 677877664    45668999999998655 4 999965

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.36  E-value=3.3e-07  Score=76.28  Aligned_cols=67  Identities=15%  Similarity=0.204  Sum_probs=55.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------CCCeEEEEccCCCC---CCC-CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------LVNLKYVGGDMFKA---ISP-ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~------~~ri~~~~gD~~~~---~p~-~D~~~  207 (209)
                      ....+|||||||+|.++..+++..|..+++++|+ |.+++.|++   .      .+|++++.+|.++.   .+. +|+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            3568999999999999999999888899999999 788888775   1      46899999998762   233 89987


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       195 ~  195 (321)
T 2pt6_A          195 V  195 (321)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.35  E-value=6.1e-07  Score=69.39  Aligned_cols=65  Identities=18%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      +.+..+|||||||+|.++..++++  ..+++++|+ +.+++.+++.. ++++..+|+.+ +.+. +|+|+.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~fD~v~~  108 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL-GRPVRTMLFHQLDAIDAYDAVWA  108 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCCCCSCEEEEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-CCceEEeeeccCCCCCcEEEEEe
Confidence            445689999999999999999998  568999999 78888877422 67888999876 4333 899975

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.34  E-value=4.3e-07  Score=74.66  Aligned_cols=66  Identities=12%  Similarity=0.145  Sum_probs=55.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEEccCCCC---CCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFKA---ISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~--------~~ri~~~~gD~~~~---~p~-~D~~~l  208 (209)
                      ...+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .        .+|++++.+|.++.   .+. +|+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            458999999999999999999888899999999 788887764 1        47999999997652   233 899975

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.34  E-value=4.3e-07  Score=72.14  Aligned_cols=68  Identities=15%  Similarity=0.112  Sum_probs=56.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CC------CC-
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AI------SP-  202 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~------p~-  202 (209)
                      ..+..+|||||||+|..+..+++..| +.+++.+|+ +.+++.|++      ..++|+++.+|..+   .+      +. 
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            34678999999999999999999988 789999999 788887764      34689999999875   22      33 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|++++
T Consensus       148 fD~I~~  153 (237)
T 3c3y_A          148 YDFGFV  153 (237)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence            899985

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.34  E-value=5.5e-07  Score=72.26  Aligned_cols=65  Identities=26%  Similarity=0.381  Sum_probs=51.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCC--CCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p--~~D~~~l  208 (209)
                      .+..+|||+|||+|.++..+++..+  +++++|+ |.+++.+++    ..-.+++..+|+.+.+|  .+|+++.
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~  190 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVA  190 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEE
Confidence            4568999999999999999999877  8999999 777877764    11128999999877553  3899874

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.33  E-value=5.1e-07  Score=74.45  Aligned_cols=67  Identities=16%  Similarity=0.234  Sum_probs=55.6

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---C-CCC-CcEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---A-ISP-ADAV  206 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~-~p~-~D~~  206 (209)
                      ....+|||||||+|.++..+++..|..+++++|+ |.+++.|++         ..+|++++.+|+.+   . .+. +|+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4568999999999999999999888889999999 788887764         14789999999876   2 133 8999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      +.
T Consensus       174 i~  175 (304)
T 3bwc_A          174 II  175 (304)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.33  E-value=5.2e-07  Score=76.51  Aligned_cols=67  Identities=21%  Similarity=0.149  Sum_probs=56.6

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p-~-~D~~~l  208 (209)
                      .+..+|||+|||+|.++..+++..+..+++++|+ +.+++.|++      ..++|+++.+|+.+ +.+ . +|+|+.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~  292 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAIS  292 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEE
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEE
Confidence            4568999999999999999999998778999999 788888775      23689999999987 444 3 899875

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.33  E-value=1.1e-06  Score=67.31  Aligned_cols=61  Identities=18%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          146 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       146 ~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      +|||||||+|.++..++++  ..+++++|. +.+++.+++    ...+++++.+|+.+ ++|.  +|+++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  100 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVS  100 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEE
Confidence            9999999999999999987  568999999 778887764    13489999999987 5553  899874

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.33  E-value=2.1e-06  Score=69.54  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=53.3

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CC-C-C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AI-S-P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~-p-~-~D~~~l  208 (209)
                      .+..+|||||||+|.++..+++. +..+++++|+ +.+++.|++      ...+++++.+|+.+ ++ + . +|+|+.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEE
Confidence            46689999999999999998876 5668999999 788887764      12579999999987 55 3 3 899975

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.33  E-value=5.1e-07  Score=69.82  Aligned_cols=65  Identities=18%  Similarity=0.166  Sum_probs=51.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C-C--CCeEEEEccCCCC---C--CC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D-L--VNLKYVGGDMFKA---I--SP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~-~--~ri~~~~gD~~~~---~--p~-~D~~~l  208 (209)
                      ...+|||+|||+|.++..++++.+ .+++++|+ +.+++.|++    . .  ++++++.+|+.+.   +  .. +|++++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            457999999999999999888754 57999999 788888774    1 2  6899999998762   1  24 799885

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.33  E-value=4.6e-07  Score=75.82  Aligned_cols=67  Identities=19%  Similarity=0.240  Sum_probs=56.1

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEEccCCC---CCC-C-CcEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFK---AIS-P-ADAV  206 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~--------~~ri~~~~gD~~~---~~p-~-~D~~  206 (209)
                      ....+|||||||+|.++..+++..|..+++++|+ +.+++.|++ .        .+|++++.+|+++   .++ . +|+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            4568999999999999999999888899999999 788888775 1        4689999999765   333 3 8999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       199 i~  200 (334)
T 1xj5_A          199 IV  200 (334)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.33  E-value=1.6e-06  Score=67.73  Aligned_cols=68  Identities=21%  Similarity=0.243  Sum_probs=54.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc---C-------CCCeEEEEccCCCCCC---CCcE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES---D-------LVNLKYVGGDMFKAIS---PADA  205 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~---~-------~~ri~~~~gD~~~~~p---~~D~  205 (209)
                      ..+..+|||||||+|..+..+++.+ |..+++++|+ +.+++.+++   .       .++++++.+|+.+..+   .+|+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            3456899999999999999999985 7789999999 777877764   1       4589999999876432   2899


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      ++.
T Consensus       155 i~~  157 (226)
T 1i1n_A          155 IHV  157 (226)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.32  E-value=4.7e-07  Score=74.79  Aligned_cols=67  Identities=16%  Similarity=0.240  Sum_probs=56.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~~  207 (209)
                      ....+|||||||+|..+..++++.|..+++++|+ +.+++.|++         ..+|++++.+|.++   ..+. +|+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            4568999999999999999999988899999999 788887774         15799999999865   2233 89997


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       174 ~  174 (304)
T 2o07_A          174 T  174 (304)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.32  E-value=1.6e-06  Score=67.25  Aligned_cols=72  Identities=14%  Similarity=0.095  Sum_probs=54.9

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC----C-CC-C-C
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK----A-IS-P-A  203 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~----~-~p-~-~  203 (209)
                      .+++.+.  .....+|||||||+|.++..++++  ..+++++|+ +.+++.+++. .++++..+|+.+    + .+ . +
T Consensus        43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~f  117 (227)
T 3e8s_A           43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDY  117 (227)
T ss_dssp             HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCE
T ss_pred             HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCc
Confidence            3444444  345689999999999999999998  568999999 7888888744 778888888754    1 22 3 8


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+|+.
T Consensus       118 D~v~~  122 (227)
T 3e8s_A          118 DLICA  122 (227)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99875

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.31  E-value=4.4e-07  Score=74.06  Aligned_cols=70  Identities=16%  Similarity=0.273  Sum_probs=55.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhhcccC-CCCeEEEEccCCC-CCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLESD-LVNLKYVGGDMFK-AISP  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~--l~~~~~Dl-p~v~~~a~~~-~~ri~~~~gD~~~-~~p~  202 (209)
                      ..+++.++  .....+|||||||+|.++..|+++.+.  .+++++|+ +.+++.+++. .++++++.+|+++ +++.
T Consensus        32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            44555555  556789999999999999999999765  56899999 7888877643 4689999999987 4543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.31  E-value=5.8e-07  Score=71.07  Aligned_cols=65  Identities=17%  Similarity=0.238  Sum_probs=52.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-----CCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-----LVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-----~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ...+|||||||+|.++..+++++ ..+++++|+ +.+++.|++.     ..+++++.+|+.+ +.+.  +|+|++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  152 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI  152 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEE
Confidence            46899999999999999999987 568999999 7888877751     3469999999876 3443  899975

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.30  E-value=8e-07  Score=69.75  Aligned_cols=68  Identities=19%  Similarity=0.268  Sum_probs=55.1

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC------CCeEEEeec-hHHHhhcccC----------CCCeEEEEccCCCCCCC-
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP------KLECTCFDL-PHVVNGLESD----------LVNLKYVGGDMFKAISP-  202 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P------~l~~~~~Dl-p~v~~~a~~~----------~~ri~~~~gD~~~~~p~-  202 (209)
                      ..+..+|||||||+|.++..+++..+      ..+++++|+ +.+++.|++.          ..+++++.+|..+++|. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            44567999999999999999999766      368999998 7778777641          46899999999876542 


Q ss_pred             --CcEEEe
Q 046346          203 --ADAVVL  208 (209)
Q Consensus       203 --~D~~~l  208 (209)
                        +|+|+.
T Consensus       162 ~~fD~I~~  169 (227)
T 1r18_A          162 APYNAIHV  169 (227)
T ss_dssp             CSEEEEEE
T ss_pred             CCccEEEE
Confidence              899875

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.29  E-value=5.7e-07  Score=73.44  Aligned_cols=67  Identities=15%  Similarity=0.171  Sum_probs=56.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEEccCCCC---CCC-CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFKA---ISP-ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~--------~~ri~~~~gD~~~~---~p~-~D~~~  207 (209)
                      ....+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .        .+|++++.+|..+.   .+. +|+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            4568999999999999999999888899999999 788888775 1        47999999998762   244 89987


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       157 ~  157 (283)
T 2i7c_A          157 V  157 (283)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.28  E-value=4.8e-07  Score=71.54  Aligned_cols=67  Identities=16%  Similarity=0.227  Sum_probs=54.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CC------CCCc
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AI------SPAD  204 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~------p~~D  204 (209)
                      .+..+|||||||+|..+..+++..| +.+++.+|. |..++.|++      ..++|+++.+|+.+   .+      ..+|
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            3568999999999999999999998 789999999 777877764      24689999999754   22      2389


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      ++++
T Consensus       151 ~V~~  154 (232)
T 3cbg_A          151 LIFI  154 (232)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9875

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.27  E-value=1.7e-06  Score=66.80  Aligned_cols=61  Identities=18%  Similarity=0.130  Sum_probs=50.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ...+|||||||+|.++..+     .. +++++|. +.+++.+++...+++++.+|+.+ +++.  +|++++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  101 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL  101 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEE
Confidence            6689999999999999888     44 8999999 78888887644789999999976 5543  899875

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.27  E-value=5.8e-07  Score=74.51  Aligned_cols=67  Identities=18%  Similarity=0.161  Sum_probs=55.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C---------CCCeEEEEccCCCC---CCC-CcEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D---------LVNLKYVGGDMFKA---ISP-ADAV  206 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~---------~~ri~~~~gD~~~~---~p~-~D~~  206 (209)
                      ....+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .         .+|++++.+|..+.   .+. +|+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            4568999999999999999999888899999999 788887764 1         46899999998762   233 8998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       156 i~  157 (314)
T 1uir_A          156 II  157 (314)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.27  E-value=6e-07  Score=74.51  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=55.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEEccCCCC---CCC-CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFKA---ISP-ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~--------~~ri~~~~gD~~~~---~p~-~D~~~  207 (209)
                      ....+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .        .+|++++.+|.++.   .+. +|+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            3568999999999999999999888899999999 788888775 1        46899999998762   233 89998


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       187 ~  187 (314)
T 2b2c_A          187 T  187 (314)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.26  E-value=2.3e-06  Score=73.12  Aligned_cols=76  Identities=12%  Similarity=0.022  Sum_probs=59.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--------------------------------------LECTC  172 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~--------------------------------------l~~~~  172 (209)
                      ..++....  |.+...|+|.+||+|.++++.+....+                                      .++++
T Consensus       191 a~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  268 (393)
T 3k0b_A          191 AALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG  268 (393)
T ss_dssp             HHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence            34445555  567789999999999999998876544                                      57999


Q ss_pred             eec-hHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          173 FDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       173 ~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      +|+ +.+++.|+.      ..++|+++.+|+++ +.+. +|+|+.
T Consensus       269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~  313 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVA  313 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEE
Confidence            999 788888774      34679999999987 3444 899875

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.26  E-value=1.8e-06  Score=69.75  Aligned_cols=51  Identities=14%  Similarity=0.109  Sum_probs=41.7

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      ...+++.++  ..+..+|||||||+|.++..++++  ..+++++|+ +.+++.|++
T Consensus        34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~   85 (261)
T 3iv6_A           34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAE   85 (261)
T ss_dssp             HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHH
Confidence            345556555  566789999999999999999997  457999999 788988875

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.26  E-value=2.9e-06  Score=67.87  Aligned_cols=64  Identities=19%  Similarity=0.245  Sum_probs=50.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ....+|||||||+|.++..++++  ..+++++|. +.+++.+++.... .++.+|+.+ +++.  +|+++.
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~  120 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLA  120 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEE
Confidence            36689999999999999999987  568999999 7888887753222 288999876 5543  899875

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.25  E-value=2e-06  Score=73.33  Aligned_cols=76  Identities=16%  Similarity=0.105  Sum_probs=59.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCC--------------------------------------CCeEEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP--------------------------------------KLECTC  172 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P--------------------------------------~l~~~~  172 (209)
                      ..++....  +.+..+|+|.+||+|.++++++....                                      ..++++
T Consensus       185 a~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          185 AGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            34455555  56678999999999999999887743                                      267999


Q ss_pred             eec-hHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          173 FDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       173 ~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      +|+ +.+++.|+.      ..++|+|..+|+++ +.|. +|+|+.
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~  307 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIIT  307 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEE
Confidence            999 788888874      34589999999987 3444 899875

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.25  E-value=2.3e-06  Score=65.75  Aligned_cols=61  Identities=13%  Similarity=0.421  Sum_probs=47.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA  199 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~  199 (209)
                      ..+.+.+. .+.+..+|||+|||+|.++..++++  ..+++++|+.+..     ...+++++.+|+.+.
T Consensus        14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----~~~~v~~~~~D~~~~   74 (191)
T 3dou_A           14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----EIAGVRFIRCDIFKE   74 (191)
T ss_dssp             HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----CCTTCEEEECCTTSS
T ss_pred             HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----cCCCeEEEEccccCH
Confidence            34455554 2456789999999999999999998  7789999995431     246899999999873

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.24  E-value=1.6e-06  Score=70.51  Aligned_cols=67  Identities=16%  Similarity=0.240  Sum_probs=52.7

Q ss_pred             CCCeEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHhhcccC--------------------------C-
Q 046346          143 GLNSLVDVGGGTGT----AAKAIAKAFP----KLECTCFDL-PHVVNGLESD--------------------------L-  186 (209)
Q Consensus       143 ~~~~vlDvGgG~G~----~~~~l~~~~P----~l~~~~~Dl-p~v~~~a~~~--------------------------~-  186 (209)
                      +..+|+|+|||+|.    +++.|++..|    +.++++.|+ +.+++.|++.                          . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999999    6777778766    468999999 7888887641                          0 


Q ss_pred             ---------CCeEEEEccCCC-CCC--C-CcEEEeC
Q 046346          187 ---------VNLKYVGGDMFK-AIS--P-ADAVVLK  209 (209)
Q Consensus       187 ---------~ri~~~~gD~~~-~~p--~-~D~~~l~  209 (209)
                               .+|+|..+|+.+ ++|  . +|+|+.+
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~cr  220 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCR  220 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEEC
Confidence                     379999999998 465  3 9999853

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.24  E-value=2.1e-06  Score=73.30  Aligned_cols=73  Identities=10%  Similarity=0.074  Sum_probs=56.9

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC--CCcE
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PADA  205 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p--~~D~  205 (209)
                      +..+++.+.  .....+|||+|||+|.++..+++++ +..+++++|+ |.+++.|    .+++++.+|+++..+  .+|+
T Consensus        28 ~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~~~~fD~  101 (421)
T 2ih2_A           28 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEPGEAFDL  101 (421)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCCSSCEEE
T ss_pred             HHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCccCCCCE
Confidence            344445444  2345699999999999999999988 7789999999 6666655    689999999988433  3999


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |+.
T Consensus       102 Ii~  104 (421)
T 2ih2_A          102 ILG  104 (421)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.24  E-value=6.6e-07  Score=72.96  Aligned_cols=66  Identities=18%  Similarity=0.252  Sum_probs=54.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------------CCCeEEEEccCCCCC--CC-
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------------LVNLKYVGGDMFKAI--SP-  202 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~--------------~~ri~~~~gD~~~~~--p~-  202 (209)
                      ....+|||||||+|..+..+++. |..+++++|+ |.+++.|++ .              .+|++++.+|..+-+  +. 
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            35689999999999999999998 8889999999 788887764 2              468999999976521  43 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+|++
T Consensus       153 fD~Ii~  158 (281)
T 1mjf_A          153 FDVIIA  158 (281)
T ss_dssp             EEEEEE
T ss_pred             eeEEEE
Confidence            899875

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.23  E-value=2.6e-06  Score=63.18  Aligned_cols=62  Identities=18%  Similarity=0.268  Sum_probs=51.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEEccCCC-C--------CCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-A--------ISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~-~--------~p~--~D~~~l  208 (209)
                      ....+|||||||+|.++..+++++ |+.+++++|+.++++     ..+++++.+|+.+ +        ++.  +|+++.
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~   94 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS   94 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc-----cCcEEEEEcccccchhhhhhhccCCCCceeEEEE
Confidence            456799999999999999999995 789999999966332     2789999999987 3        552  899875

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.22  E-value=1.6e-06  Score=66.62  Aligned_cols=66  Identities=15%  Similarity=0.157  Sum_probs=51.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ....+|||||||+|..+..++.. +..+++++|. +.+++.+++    ...+++++.+|+.+ ++|.  +|+++.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEE
Confidence            45689999999999986555544 5679999999 788887764    24689999999987 5543  899875

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.22  E-value=1.9e-06  Score=69.67  Aligned_cols=65  Identities=14%  Similarity=0.028  Sum_probs=54.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---------CCCeEEEEccCCCCCCCCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---------LVNLKYVGGDMFKAISPADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---------~~ri~~~~gD~~~~~p~~D~~~l  208 (209)
                      +.+.+|||||||+|..+..+++. + .+++++|+ |.+++.|++.         .+|++++.+|.++-+..+|+|++
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~  145 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFC  145 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEE
Confidence            45689999999999999999998 8 89999999 7889888751         36899999998764433899975

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.21  E-value=2.3e-06  Score=68.61  Aligned_cols=70  Identities=26%  Similarity=0.368  Sum_probs=55.0

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEEccCCC-CCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFK-AISP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~-~~ri~~~~gD~~~-~~p~  202 (209)
                      ...+++.++  .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++. ..+++++.+|+.+ +++.
T Consensus        20 ~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           20 LKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence            345566665  556789999999999999999987 5678999999 6778777643 4589999999987 5553

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.21  E-value=3.9e-06  Score=71.46  Aligned_cols=76  Identities=16%  Similarity=0.086  Sum_probs=59.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--------------------------------------LECTC  172 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~--------------------------------------l~~~~  172 (209)
                      ..++....  |.+...|+|.+||+|.++++.+....+                                      .++++
T Consensus       184 aall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G  261 (384)
T 3ldg_A          184 AAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG  261 (384)
T ss_dssp             HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence            33445445  567789999999999999998876544                                      57999


Q ss_pred             eec-hHHHhhccc------CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          173 FDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       173 ~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      +|+ +.+++.|+.      ..++|+++.+|+++ +.+. +|+++.
T Consensus       262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~  306 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLIS  306 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEE
Confidence            999 788888774      35689999999987 4444 899875

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.21  E-value=4e-06  Score=72.40  Aligned_cols=66  Identities=17%  Similarity=0.242  Sum_probs=53.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-------CCcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-------PADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-------~~D~~~  207 (209)
                      ..+..+|||+|||+|.++..++++  ..+++++|. +.+++.|++     ...+++|+.+|+++.++       .+|+++
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv  361 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  361 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence            445679999999999999999988  678999999 788887764     23589999999987332       289988


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       362 ~  362 (433)
T 1uwv_A          362 L  362 (433)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.20  E-value=2.3e-06  Score=68.93  Aligned_cols=65  Identities=14%  Similarity=0.239  Sum_probs=53.0

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK  198 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~  198 (209)
                      ...+++.++  .....+|||||||+|.++..++++.  .+++++|+ +.+++.+++   ..++++++.+|+++
T Consensus        18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~   86 (255)
T 3tqs_A           18 LQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQ   86 (255)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTT
T ss_pred             HHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHh
Confidence            345566665  5567899999999999999999985  57899999 788887765   24799999999987

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.18  E-value=4e-06  Score=65.27  Aligned_cols=57  Identities=14%  Similarity=0.138  Sum_probs=47.5

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ..+|||||||+|.++..++++      +++|. +.+++.+++.  +++++.+|+.+ +++.  +|++++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~  108 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALM  108 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEE
Confidence            789999999999999998765      88998 7888887744  79999999876 4443  899875

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.15  E-value=6.3e-06  Score=70.12  Aligned_cols=64  Identities=19%  Similarity=0.232  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCC-CC-C-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA-IS-P-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~-~p-~-~D~~~l  208 (209)
                      ...+|||+|||+|.++..++++  +.+++++|. +.+++.|++    ...+++++.+|+++. .+ . +|+|+.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~  304 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVT  304 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEE
Confidence            4679999999999999999998  568999999 788887774    233599999999884 33 3 999985

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.15  E-value=2.7e-06  Score=70.45  Aligned_cols=68  Identities=12%  Similarity=0.167  Sum_probs=54.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C-CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A-ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~-~p~-~D~~~l  208 (209)
                      .....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++     ...+++++.+|+.+ + .+. +|+|++
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~  193 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  193 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEE
Confidence            45668999999999999999999975 578999999 677777664     23479999999876 2 333 899885

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.10  E-value=8.1e-06  Score=62.08  Aligned_cols=63  Identities=16%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCC---------CeEEEeechHHHhhcccCCCCeEEE-EccCCCC---------CC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPK---------LECTCFDLPHVVNGLESDLVNLKYV-GGDMFKA---------IS  201 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~---------l~~~~~Dlp~v~~~a~~~~~ri~~~-~gD~~~~---------~p  201 (209)
                      +.+..+|||||||+|.++..+++++|.         .+++++|+.++.     ...+++++ .+|+.+.         ++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----PLEGATFLCPADVTDPRTSQRILEVLP   94 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----CCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----cCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence            345689999999999999999999875         799999996531     13578999 9998762         23


Q ss_pred             --CCcEEEe
Q 046346          202 --PADAVVL  208 (209)
Q Consensus       202 --~~D~~~l  208 (209)
                        .+|+|+.
T Consensus        95 ~~~fD~V~~  103 (196)
T 2nyu_A           95 GRRADVILS  103 (196)
T ss_dssp             GGCEEEEEE
T ss_pred             CCCCcEEEe
Confidence              3899874

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.08  E-value=4.6e-06  Score=74.50  Aligned_cols=66  Identities=14%  Similarity=0.154  Sum_probs=52.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C--CCCeEEEEccCCC---CC-CC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D--LVNLKYVGGDMFK---AI-SP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~--~~ri~~~~gD~~~---~~-p~-~D~~~l  208 (209)
                      +.++.+|||||||.|.++..+++.  +.+++++|+ +.+|+.|+.   .  .-+|+|..+|..+   +. +. ||+|+.
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~  140 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIG  140 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEE
Confidence            345679999999999999999998  678999999 788888774   2  2369999998754   33 33 999863

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.06  E-value=1.2e-05  Score=63.86  Aligned_cols=68  Identities=19%  Similarity=0.222  Sum_probs=54.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCCC--CC---C-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA--IS---P-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~~--~p---~-~D~~~l  208 (209)
                      ..+..+|||+|||+|.++..+++. .|+=+++.+|+ |.+++.+++   ...++..+.+|..++  .|   . +|++++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~  153 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYA  153 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEE
Confidence            567899999999999999999998 59999999999 788877654   346799999988762  12   2 787764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.06  E-value=4.5e-06  Score=67.04  Aligned_cols=68  Identities=12%  Similarity=0.145  Sum_probs=51.4

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---CCCeEEEEccCCC-CCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---LVNLKYVGGDMFK-AIS  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~~ri~~~~gD~~~-~~p  201 (209)
                      ...+++.+.  .....+|||||||+|.++. +. +.++.+++++|+ +.+++.+++.   .++++++.+|+.+ +++
T Consensus        10 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A           10 IDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred             HHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence            345566555  5566899999999999999 64 555555999999 7888887752   2589999999987 443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.03  E-value=2.6e-06  Score=69.01  Aligned_cols=68  Identities=16%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CC-----CC-CcEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-----SP-ADAV  206 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~-----p~-~D~~  206 (209)
                      .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++     ...+++++.+|+.+ +.     +. +|+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            445689999999999999999999887 78999999 677776654     13489999999876 21     33 8998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       161 l~  162 (274)
T 3ajd_A          161 LL  162 (274)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.02  E-value=2.8e-06  Score=68.47  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=51.8

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-h-------HHHhhccc------CCCCeEEEEccCCCC---CC--
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P-------HVVNGLES------DLVNLKYVGGDMFKA---IS--  201 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p-------~v~~~a~~------~~~ri~~~~gD~~~~---~p--  201 (209)
                      .....+|||+|||+|..+..+++.  ..+++.+|+ |       .+++.|++      ...||+++.+|+.+-   ++  
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            345679999999999999999997  468999999 6       66666653      236799999998762   33  


Q ss_pred             -C-CcEEEe
Q 046346          202 -P-ADAVVL  208 (209)
Q Consensus       202 -~-~D~~~l  208 (209)
                       . +|+|++
T Consensus       159 ~~~fD~V~~  167 (258)
T 2r6z_A          159 QGKPDIVYL  167 (258)
T ss_dssp             HCCCSEEEE
T ss_pred             CCCccEEEE
Confidence             3 899986

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.02  E-value=8.1e-06  Score=66.50  Aligned_cols=67  Identities=18%  Similarity=0.069  Sum_probs=54.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC--CCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p--~~D~~~l  208 (209)
                      .....+|||+|||+|.+++.++++ ...+++.+|+ |.+++.+++      ..++|+++.+|.++-.+  .+|.|+|
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~  198 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM  198 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEE
Confidence            346789999999999999999987 4568999999 777877664      56899999999987333  3898876

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.01  E-value=2.3e-06  Score=68.11  Aligned_cols=68  Identities=16%  Similarity=0.339  Sum_probs=54.3

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---CCCeEEEEccCCC-CCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---LVNLKYVGGDMFK-AIS  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~---~~ri~~~~gD~~~-~~p  201 (209)
                      ...+++.++  .....+|||||||+|.++..++++.  .+++++|+ +.+++.+++.   .++++++.+|+.+ +++
T Consensus        18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~   90 (245)
T 1yub_A           18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcc
Confidence            345566665  5567899999999999999999996  78999999 6778777652   3689999999987 554

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.01  E-value=7.8e-06  Score=66.14  Aligned_cols=65  Identities=17%  Similarity=0.068  Sum_probs=48.1

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc-CC------CCeEEE--EccCCCCCCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-DL------VNLKYV--GGDMFKAISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-~~------~ri~~~--~gD~~~~~p~-~D~~~l  208 (209)
                      +.+..+|||||||+|.++..++++   .+++++|+.+++..+++ ..      .+++++  .+|+.+--+. +|+++.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~s  146 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMC  146 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEE
Confidence            445689999999999999999887   57999999656433321 11      178999  9999761133 899874

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.01  E-value=2.2e-05  Score=63.79  Aligned_cols=66  Identities=21%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhhcccCC---------------CCeEEEEccCCCC---C-
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGLESDL---------------VNLKYVGGDMFKA---I-  200 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl--p~v~~~a~~~~---------------~ri~~~~gD~~~~---~-  200 (209)
                      ....+|||||||+|.++..+++.. ..+++++|+  +.+++.|++..               +++++...|+.+.   + 
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence            456799999999999999988864 348999999  57777665311               4788887665442   2 


Q ss_pred             ----CC-CcEEEe
Q 046346          201 ----SP-ADAVVL  208 (209)
Q Consensus       201 ----p~-~D~~~l  208 (209)
                          +. +|+|++
T Consensus       157 ~~~~~~~fD~Ii~  169 (281)
T 3bzb_A          157 RCTGLQRFQVVLL  169 (281)
T ss_dssp             HHHSCSSBSEEEE
T ss_pred             hhccCCCCCEEEE
Confidence                23 899875

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.00  E-value=2.9e-05  Score=61.53  Aligned_cols=76  Identities=13%  Similarity=0.130  Sum_probs=55.3

Q ss_pred             HHHHhccc-cccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHH----hhcccCCCCeEEEEccCCCC-----
Q 046346          132 VMIQKCKN-VFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVV----NGLESDLVNLKYVGGDMFKA-----  199 (209)
Q Consensus       132 ~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~----~~a~~~~~ri~~~~gD~~~~-----  199 (209)
                      .++..++. .+.+..+|||+|||+|..+..+++. .|+-+++.+|+ |.++    +.++ ...++.++.+|...+     
T Consensus        64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~-~r~nv~~i~~Da~~~~~~~~  142 (232)
T 3id6_C           64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ-RRPNIFPLLADARFPQSYKS  142 (232)
T ss_dssp             HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH-HCTTEEEEECCTTCGGGTTT
T ss_pred             HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCeEEEEcccccchhhhc
Confidence            34444431 1456789999999999999999987 46889999999 5443    3443 246899999998763     


Q ss_pred             CCC-CcEEEe
Q 046346          200 ISP-ADAVVL  208 (209)
Q Consensus       200 ~p~-~D~~~l  208 (209)
                      ++. +|+++.
T Consensus       143 ~~~~~D~I~~  152 (232)
T 3id6_C          143 VVENVDVLYV  152 (232)
T ss_dssp             TCCCEEEEEE
T ss_pred             cccceEEEEe
Confidence            223 899875

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.99  E-value=5.8e-06  Score=69.02  Aligned_cols=64  Identities=20%  Similarity=0.175  Sum_probs=51.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCC-CeEEEEccCCCCC------C-CCcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLV-NLKYVGGDMFKAI------S-PADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~-ri~~~~gD~~~~~------p-~~D~~~  207 (209)
                      ...+|||+|||+|.++..+++...  +++.+|+ +.+++.|++      ..+ +++++.+|+++.+      . .+|+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            457999999999999999999754  8999999 788887764      233 5999999998722      2 399998


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       231 ~  231 (332)
T 2igt_A          231 T  231 (332)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=97.99  E-value=2.6e-06  Score=67.79  Aligned_cols=65  Identities=18%  Similarity=0.131  Sum_probs=50.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C-CC--------------------------------
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D-LV--------------------------------  187 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~-~~--------------------------------  187 (209)
                      ...+|||||||+|.++..+++..+ .+++++|. +.+++.+++ . ..                                
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            457999999999999999998877 67899999 677877764 1 11                                


Q ss_pred             Ce-EEEEccCCCCC---C---C-CcEEEe
Q 046346          188 NL-KYVGGDMFKAI---S---P-ADAVVL  208 (209)
Q Consensus       188 ri-~~~~gD~~~~~---p---~-~D~~~l  208 (209)
                      ++ +++.+|+.+..   +   . +|+|+.
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~  163 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLS  163 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEE
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEE
Confidence            28 99999998732   2   3 899875

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.99  E-value=7.6e-06  Score=66.60  Aligned_cols=64  Identities=22%  Similarity=0.123  Sum_probs=48.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc-CC------CCeEEE--EccCCCCCC-C-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-DL------VNLKYV--GGDMFKAIS-P-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~-~~------~ri~~~--~gD~~~~~p-~-~D~~~l  208 (209)
                      +.+..+|||||||+|.++..++++   -+++++|+.+++..+++ ..      .+++++  .+|+.+ +| . +|+++.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvs  154 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLC  154 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEE
Confidence            445689999999999999999988   57999999656443332 11      178999  999876 33 3 899874

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.98  E-value=3.3e-05  Score=66.55  Aligned_cols=64  Identities=16%  Similarity=0.169  Sum_probs=52.3

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~-~D~~~l  208 (209)
                      .+..+|||+|||+|.++..+++.  ..+++++|. +.+++.|++     ... ++|+.+|+++-.+. +|++++
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~  359 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIV  359 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEE
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEE
Confidence            35689999999999999999987  457999999 788887764     123 99999999885554 899886

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.96  E-value=2.2e-05  Score=64.38  Aligned_cols=68  Identities=19%  Similarity=0.211  Sum_probs=57.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------CCCCeEEEEccCCCC---CCC-CcE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFKA---ISP-ADA  205 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~~ri~~~~gD~~~~---~p~-~D~  205 (209)
                      .+.+++||-||||.|..+.++++..|-.+++++|+ |.|++.+++          ..+|++.+.+|.++-   -+. +|+
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            35689999999999999999998888889999999 889988875          257999999998872   223 899


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |++
T Consensus       161 Ii~  163 (294)
T 3o4f_A          161 IIS  163 (294)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.93  E-value=1.3e-05  Score=66.88  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=52.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCCCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~~D~~~l  208 (209)
                      ....+|||+|||+|.++.. ++  +..+++.+|+ |.+++.+++      ..++++++.+|+++-...+|++++
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~  264 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIM  264 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEE
Confidence            3568999999999999999 77  5778999999 788887764      236899999999875544899886

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.93  E-value=1.5e-05  Score=63.16  Aligned_cols=55  Identities=9%  Similarity=0.026  Sum_probs=39.0

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCC
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVN  188 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~r  188 (209)
                      .+++.+.. -....+|||||||+|.++..++++ ...+++++|+ +.+++.+++...+
T Consensus        27 ~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~   82 (232)
T 3opn_A           27 KALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDER   82 (232)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTT
T ss_pred             HHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCcc
Confidence            34444441 124579999999999999999998 3348999999 6777765543333

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.92  E-value=1.8e-05  Score=68.59  Aligned_cols=68  Identities=24%  Similarity=0.266  Sum_probs=54.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---CC-C-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---IS-P-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~p-~-~D~~~l  208 (209)
                      .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++     ...+++++.+|+.+.   ++ . +|+|++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            445679999999999999999999987 79999999 666766553     235799999999762   44 4 899985

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.91  E-value=9.3e-06  Score=62.79  Aligned_cols=61  Identities=21%  Similarity=0.332  Sum_probs=44.9

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      +++.+.. .....+|||||||+|.++..++     .+++++|..+.         +++++.+|+.+ +++.  +|+++.
T Consensus        58 ~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~~  121 (215)
T 2zfu_A           58 IARDLRQ-RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAVF  121 (215)
T ss_dssp             HHHHHHT-SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred             HHHHHhc-cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------CceEEEeccccCCCCCCCEeEEEE
Confidence            4444431 3456899999999999998883     57888997433         67888999877 5543  899875

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.90  E-value=4.6e-05  Score=61.88  Aligned_cols=56  Identities=21%  Similarity=0.318  Sum_probs=45.1

Q ss_pred             CCCeEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C----CCCeEEEEccCCC
Q 046346          143 GLNSLVDVGGGT---GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D----LVNLKYVGGDMFK  198 (209)
Q Consensus       143 ~~~~vlDvGgG~---G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~----~~ri~~~~gD~~~  198 (209)
                      +..++||||||+   |.....+.+..|+.+++.+|. |.|++.|+. +    ..+++|+.+|+.+
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~  142 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD  142 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence            668999999997   344444455689999999999 899999886 1    2479999999977

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.86  E-value=9.9e-06  Score=65.74  Aligned_cols=41  Identities=17%  Similarity=0.175  Sum_probs=31.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      ...+|||||||+|.+ ..++.+.+..+++++|+ +.+++.|++
T Consensus        71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a~~  112 (289)
T 2g72_A           71 SGRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQELGR  112 (289)
T ss_dssp             CCSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHHHH
Confidence            467999999999994 44444445669999999 778876653

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.85  E-value=9.3e-06  Score=69.09  Aligned_cols=66  Identities=17%  Similarity=0.075  Sum_probs=52.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCC-CeEEEEccCCCCC------C-CCcEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLV-NLKYVGGDMFKAI------S-PADAV  206 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~-ri~~~~gD~~~~~------p-~~D~~  206 (209)
                      .+..+|||+|||+|.++..+++.. ..+++.+|+ +.+++.|++      ..+ +++|+.+|+++.+      . .+|+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            346799999999999999999863 237999999 788887764      233 8999999987622      2 38999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       290 i~  291 (385)
T 2b78_A          290 II  291 (385)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.83  E-value=1.9e-05  Score=67.44  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=47.6

Q ss_pred             CCCeEEEecCC------ccHHHHHHHHH-CCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCC-------C-CcE
Q 046346          143 GLNSLVDVGGG------TGTAAKAIAKA-FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-------P-ADA  205 (209)
Q Consensus       143 ~~~~vlDvGgG------~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p-------~-~D~  205 (209)
                      +..+|||||||      +|..+..++++ +|+.+++++|+ +.+.   . ..++|+|+.+|+.+ +++       . +|+
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~-~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl  291 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---V-DELRIRTIQGDQNDAEFLDRIARRYGPFDI  291 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---G-CBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---h-cCCCcEEEEecccccchhhhhhcccCCccE
Confidence            46899999999      66666666665 69999999999 4542   1 35799999999987 333       3 899


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |+.
T Consensus       292 Vis  294 (419)
T 3sso_A          292 VID  294 (419)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.83  E-value=1.8e-05  Score=66.11  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=53.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCC-C-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPK-----LECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS-P-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~-----l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p-~-~D~~~l  208 (209)
                      ...+|+|+|||+|.++..++++.|.     .+++++|+ |.+++.|+.    ...++++..+|++++.+ . +|+|+.
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS  207 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEE
Confidence            4579999999999999999999875     67899999 777777764    12378999999998654 3 898874

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.83  E-value=1.6e-05  Score=65.63  Aligned_cols=65  Identities=17%  Similarity=0.159  Sum_probs=47.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHhhcc-cC--CCCeEEEEc-cCCCCCC-CCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-----PHVVNGLE-SD--LVNLKYVGG-DMFKAIS-PADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-----p~v~~~a~-~~--~~ri~~~~g-D~~~~~p-~~D~~~l  208 (209)
                      +.+..+|||||||+|.++..++++   -+++.+|+     +..++..+ +.  .++|+++.+ |+++.-+ .+|+|+.
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~s  154 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLC  154 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEE
Confidence            445689999999999999999988   36888998     43333222 11  267999999 9976323 3899874

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.79  E-value=2.7e-05  Score=64.03  Aligned_cols=64  Identities=6%  Similarity=-0.002  Sum_probs=46.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCC-------CeEEEEccCCC---------CCC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLV-------NLKYVGGDMFK---------AIS  201 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~-------ri~~~~gD~~~---------~~p  201 (209)
                      ...+|||||||+|..+..+++.. ..+++++|+ +.+++.|++    ...       +++|...|+..         ++|
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            46899999999998777766643 458999999 788988875    121       26788887721         234


Q ss_pred             --CCcEEE
Q 046346          202 --PADAVV  207 (209)
Q Consensus       202 --~~D~~~  207 (209)
                        .+|+|+
T Consensus       127 ~~~FD~V~  134 (302)
T 2vdw_A          127 FGKFNIID  134 (302)
T ss_dssp             SSCEEEEE
T ss_pred             CCCeeEEE
Confidence              289986

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.78  E-value=7.9e-05  Score=60.54  Aligned_cols=75  Identities=17%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCC-CCeEEEEccCCC------CC-
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDL-VNLKYVGGDMFK------AI-  200 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~-~ri~~~~gD~~~------~~-  200 (209)
                      ...+++.+.  ..+...+||.+||.|..+..|+++  +.+++++|. |.+++.|+++. +|++++.+||-+      .. 
T Consensus        11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g   86 (285)
T 1wg8_A           11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG   86 (285)
T ss_dssp             HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcC
Confidence            455666666  556789999999999999999998  779999999 78888776522 699999999975      11 


Q ss_pred             -CCCcEEEe
Q 046346          201 -SPADAVVL  208 (209)
Q Consensus       201 -p~~D~~~l  208 (209)
                       ..+|.+++
T Consensus        87 ~~~vDgIL~   95 (285)
T 1wg8_A           87 VERVDGILA   95 (285)
T ss_dssp             CSCEEEEEE
T ss_pred             CCCcCEEEe
Confidence             23787775

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=97.76  E-value=7.7e-06  Score=65.68  Aligned_cols=40  Identities=23%  Similarity=0.170  Sum_probs=30.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcc
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE  183 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~  183 (209)
                      +..+|||||||+|.++..+++..- .+++++|+ +.+++.|+
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~   95 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELE   95 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHH
Confidence            457999999999988776554432 26899999 67777665

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.74  E-value=6.7e-05  Score=64.61  Aligned_cols=68  Identities=13%  Similarity=0.153  Sum_probs=54.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCC---CC-C-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---IS-P-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~---~p-~-~D~~~l  208 (209)
                      ..+..+|||+|||+|..+..+++..|+.+++++|+ +..++.+++    ..-+++++.+|+.+.   ++ . +|+|++
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEE
Confidence            34567999999999999999999999989999999 566666553    234689999999873   33 3 899985

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.72  E-value=1.6e-05  Score=67.69  Aligned_cols=65  Identities=26%  Similarity=0.240  Sum_probs=52.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC------C-CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI------S-PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~------p-~~D~~~l  208 (209)
                      +..+|||+|||+|.++..+++. +..+++++|+ +.+++.|++      ..++++++.+|+++.+      + .+|++++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            5689999999999999999987 4558999999 788887764      2238999999987621      2 3899986

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.69  E-value=1.6e-05  Score=67.69  Aligned_cols=66  Identities=17%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C-CCCeEEEEccCCCCC------C-CCcEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D-LVNLKYVGGDMFKAI------S-PADAV  206 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~-~~ri~~~~gD~~~~~------p-~~D~~  206 (209)
                      .+..+|||+|||+|.++..+++.. ..+++.+|+ +.+++.|++      . .++++++.+|+++-+      + .+|++
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            356799999999999999999975 458999999 788887764      2 238999999988622      2 38998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       298 i~  299 (396)
T 3c0k_A          298 VM  299 (396)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.69  E-value=6.7e-05  Score=55.03  Aligned_cols=55  Identities=22%  Similarity=0.208  Sum_probs=42.4

Q ss_pred             cCCCeEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCC----CCcEEE
Q 046346          142 EGLNSLVDVGGGTG-TAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS----PADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G-~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p----~~D~~~  207 (209)
                      ....++||||||+| ..+..|++. -+..+++.|+ |..++          ++..|+|++..    .+|+|+
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~----------~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG----------IVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT----------EECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc----------eEEccCCCCcccccCCcCEEE
Confidence            44679999999999 588888874 3577899997 44433          88999999765    488884

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.69  E-value=3.7e-05  Score=61.90  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=53.3

Q ss_pred             HHHHHhccccccCC--CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH-------Hhhccc-------CCCCeEEEE
Q 046346          131 SVMIQKCKNVFEGL--NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHV-------VNGLES-------DLVNLKYVG  193 (209)
Q Consensus       131 ~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v-------~~~a~~-------~~~ri~~~~  193 (209)
                      ..+.+.+.  ..+.  .+|||+|||+|..+..++++  ..+++.+|+ |.+       ++.++.       ...|++++.
T Consensus        76 e~l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~  151 (258)
T 2oyr_A           76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (258)
T ss_dssp             SHHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             HHHHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence            44555554  4445  79999999999999999998  457999999 433       333321       115899999


Q ss_pred             ccCCC---CCCC-CcEEEe
Q 046346          194 GDMFK---AISP-ADAVVL  208 (209)
Q Consensus       194 gD~~~---~~p~-~D~~~l  208 (209)
                      +|..+   .++. +|+|++
T Consensus       152 ~D~~~~L~~~~~~fDvV~l  170 (258)
T 2oyr_A          152 ASSLTALTDITPRPQVVYL  170 (258)
T ss_dssp             SCHHHHSTTCSSCCSEEEE
T ss_pred             CCHHHHHHhCcccCCEEEE
Confidence            99765   3444 899986

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.68  E-value=2.7e-05  Score=66.67  Aligned_cols=64  Identities=16%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--C-CCeEEEEccCCCC---CC--CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--L-VNLKYVGGDMFKA---IS--PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~--~-~ri~~~~gD~~~~---~p--~~D~~~l  208 (209)
                      ...+|||+|||+|..+..+++..  .+++.+|+ +.+++.|+.    .  . ++++++.+|+++-   .+  .+|+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence            36899999999999999998874  68999999 778877764    2  2 5899999999873   22  3899986

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.68  E-value=4.9e-05  Score=68.44  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             cccCCCcHHHHHHHHHHHhhhHhhHHHHHHhcccc--ccCCCeEEEecCCccHHHHHHHHHC----CCCeEEEeechHHH
Q 046346          106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNV--FEGLNSLVDVGGGTGTAAKAIAKAF----PKLECTCFDLPHVV  179 (209)
Q Consensus       106 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~~~----P~l~~~~~Dlp~v~  179 (209)
                      |.+++++-+-..|.+|+..       .+.......  ..+...|+|||||+|-++...+++.    -++++..++-.++.
T Consensus       325 evFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A  397 (637)
T 4gqb_A          325 EVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA  397 (637)
T ss_dssp             HHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH
T ss_pred             hhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH
Confidence            4457777777777777642       122222111  1234689999999999954433332    23467888876666


Q ss_pred             hhccc------CCCCeEEEEccCCC-CCCC-CcEEE
Q 046346          180 NGLES------DLVNLKYVGGDMFK-AISP-ADAVV  207 (209)
Q Consensus       180 ~~a~~------~~~ri~~~~gD~~~-~~p~-~D~~~  207 (209)
                      ..+++      ..++|+++.||+.+ .+|. +|+++
T Consensus       398 ~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV  433 (637)
T 4gqb_A          398 VVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV  433 (637)
T ss_dssp             HHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred             HHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence            55553      57899999999988 7887 99986

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.65  E-value=9.4e-05  Score=67.62  Aligned_cols=75  Identities=15%  Similarity=0.079  Sum_probs=57.0

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHH------------------------------------------CCCCe
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA------------------------------------------FPKLE  169 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~------------------------------------------~P~l~  169 (209)
                      .++....  |.+...|+|.+||+|.++++.+..                                          .|+.+
T Consensus       181 ~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~  258 (703)
T 3v97_A          181 AIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH  258 (703)
T ss_dssp             HHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence            3444444  566789999999999999988765                                          24568


Q ss_pred             EEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC----CCcEEEe
Q 046346          170 CTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS----PADAVVL  208 (209)
Q Consensus       170 ~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p----~~D~~~l  208 (209)
                      ++++|+ |.+++.|+.      ..++|+|..+|+++ ..|    .+|+++.
T Consensus       259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~  309 (703)
T 3v97_A          259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLS  309 (703)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEe
Confidence            999999 888888774      35679999999987 223    4788874

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.63  E-value=5.5e-05  Score=63.88  Aligned_cols=53  Identities=15%  Similarity=0.197  Sum_probs=43.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK  198 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~  198 (209)
                      ..+|||+|||+|.++..+++..  .+++.+|. +.+++.|++     ..++++|+.+|.++
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~  272 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE  272 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred             CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence            3689999999999999998854  47899999 788887764     23589999999865

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.62  E-value=8.2e-05  Score=65.05  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=53.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C--CCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--ISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~--~p~-~D~~~l  208 (209)
                      ...+|||+|||+|..+..+++..+ ..+++.+|+ +..++.+++     ...+|+++.+|+.+ +  .+. +|+|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            568999999999999999999976 578999999 677776654     23579999999976 2  444 999986

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.61  E-value=2.8e-05  Score=67.72  Aligned_cols=67  Identities=15%  Similarity=0.079  Sum_probs=53.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-C--CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~--~p~-~D~~~l  208 (209)
                      .....+|||+|||+|..+..+++..++ .+++.+|+ +..++.+++     ... |+++.+|+.+ +  .+. +|+|++
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence            445689999999999999999999876 68999999 677776664     123 9999999765 2  344 899985

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.61  E-value=0.00012  Score=59.92  Aligned_cols=74  Identities=7%  Similarity=0.023  Sum_probs=48.4

Q ss_pred             HHHHhcccccc-CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEE-ccCC--C--CCCC--
Q 046346          132 VMIQKCKNVFE-GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG-GDMF--K--AISP--  202 (209)
Q Consensus       132 ~~~~~~~~~~~-~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~-gD~~--~--~~p~--  202 (209)
                      .+++.+.  .. ...++||||||||.++..++++ +..+++.+|+ +.+++.+.+...|+..+. .|+.  .  .+|.  
T Consensus        75 ~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~  151 (291)
T 3hp7_A           75 KALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL  151 (291)
T ss_dssp             HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred             HHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence            3455554  33 4579999999999999999887 5568999999 677766433445654443 2332  1  2342  


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+++.
T Consensus       152 fD~v~~  157 (291)
T 3hp7_A          152 PSFASI  157 (291)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            677653

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.57  E-value=3.1e-05  Score=65.69  Aligned_cols=64  Identities=23%  Similarity=0.210  Sum_probs=51.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCC------CC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI------SP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~------p~-~D~~~l  208 (209)
                      ...+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++     ...+++++.+|+++.+      +. +|++++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            5679999999999999999998  567899999 788887764     1244999999987621      33 899886

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.56  E-value=7.7e-05  Score=63.62  Aligned_cols=64  Identities=16%  Similarity=0.079  Sum_probs=48.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCC---CCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---ISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~---~p~-~D~~~l  208 (209)
                      +..+|||+|||+|.++..+++...  +++.+|+ +.+++.|++    ..-..++..+|.++.   .+. +|+|++
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~  286 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL  286 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence            468999999999999999999854  4999999 788887764    111235668998862   233 899986

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.55  E-value=0.00013  Score=59.31  Aligned_cols=66  Identities=14%  Similarity=0.235  Sum_probs=44.3

Q ss_pred             CCCeEEEecCCccHHHH----HHHHHCCCCeE--EEeec-hHHHhhcccC------CCCeEE--EEccCCC-C------C
Q 046346          143 GLNSLVDVGGGTGTAAK----AIAKAFPKLEC--TCFDL-PHVVNGLESD------LVNLKY--VGGDMFK-A------I  200 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~----~l~~~~P~l~~--~~~Dl-p~v~~~a~~~------~~ri~~--~~gD~~~-~------~  200 (209)
                      +..+|||||||+|.++.    .++.++|+.++  +++|. +++++.|++.      ..++++  ..++..+ +      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            35699999999997654    55667898854  99998 7888877641      134444  4555432 1      2


Q ss_pred             C-C-CcEEEe
Q 046346          201 S-P-ADAVVL  208 (209)
Q Consensus       201 p-~-~D~~~l  208 (209)
                      + . +|+|+.
T Consensus       132 ~~~~fD~V~~  141 (292)
T 2aot_A          132 ELQKWDFIHM  141 (292)
T ss_dssp             CCCCEEEEEE
T ss_pred             CCCceeEEEE
Confidence            2 3 899875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.55  E-value=9.5e-05  Score=67.61  Aligned_cols=65  Identities=12%  Similarity=0.050  Sum_probs=51.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEEccCCCC---CCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA---ISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~-~ri~~~~gD~~~~---~p~-~D~~~l  208 (209)
                      ...+|||+|||+|.++..+++... .+++.+|+ +.+++.|++      .. ++++++.+|.++-   ... +|+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            457999999999999999998543 46999999 788887764      23 5899999999872   233 999986

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.54  E-value=0.00014  Score=60.03  Aligned_cols=68  Identities=12%  Similarity=0.173  Sum_probs=53.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---C---CCCcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I---SPADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~---p~~D~~~  207 (209)
                      .....+|||+|||+|..+..+++.. +..+++.+|+ +..++.+++     ...+|+++.+|+.+-   .   ..+|.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            4456899999999999999999985 5678999999 677776654     235799999998762   1   2379988


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       180 ~  180 (309)
T 2b9e_A          180 L  180 (309)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.52  E-value=3.9e-05  Score=66.69  Aligned_cols=68  Identities=13%  Similarity=0.107  Sum_probs=53.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC--C-CCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A-ISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~--~-~p~-~D~~~l  208 (209)
                      .....+|||+|||+|..+..+++..++ .+++.+|+ +..++.+++     ...+|.++.+|..+  + .+. +|+|++
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~  181 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVV  181 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEE
Confidence            445689999999999999999998765 68999999 667766654     23579999999865  1 344 899975

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.50  E-value=0.00015  Score=62.74  Aligned_cols=66  Identities=18%  Similarity=0.024  Sum_probs=51.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHhhccc------CC-CCeEEEEccCCCC-C
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAF-------------PKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA-I  200 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~-------------P~l~~~~~Dl-p~v~~~a~~------~~-~ri~~~~gD~~~~-~  200 (209)
                      ...+|+|.|||+|.++..+++..             +..+++++|+ |.++..|+.      .. .++++..+|++.. .
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            45799999999999999998864             5577999999 777777663      11 1678899999883 3


Q ss_pred             C-CCcEEEe
Q 046346          201 S-PADAVVL  208 (209)
Q Consensus       201 p-~~D~~~l  208 (209)
                      . .+|+|+.
T Consensus       251 ~~~fD~Iv~  259 (445)
T 2okc_A          251 STLVDVILA  259 (445)
T ss_dssp             SSCEEEEEE
T ss_pred             cCCcCEEEE
Confidence            3 3899874

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.48  E-value=0.00012  Score=62.06  Aligned_cols=66  Identities=14%  Similarity=0.038  Sum_probs=52.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C---------------C-CCeEEEEccCCC---
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D---------------L-VNLKYVGGDMFK---  198 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~---------------~-~ri~~~~gD~~~---  198 (209)
                      ...+|||+|||+|..++.++++.|..+++..|+ +..++.+++    .               . .+++++.+|..+   
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            367999999999999999999999889999999 677776653    2               2 238999999865   


Q ss_pred             CCCC-CcEEEe
Q 046346          199 AISP-ADAVVL  208 (209)
Q Consensus       199 ~~p~-~D~~~l  208 (209)
                      ..+. +|+|++
T Consensus       127 ~~~~~fD~I~l  137 (378)
T 2dul_A          127 ERHRYFHFIDL  137 (378)
T ss_dssp             HSTTCEEEEEE
T ss_pred             hccCCCCEEEe
Confidence            2333 898875

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.45  E-value=0.00015  Score=61.84  Aligned_cols=52  Identities=13%  Similarity=0.100  Sum_probs=41.7

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      ....+++.+.  .....+|||||||+|.++..++++.  .+++++|. +.+++.|++
T Consensus        95 ~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~  147 (416)
T 4e2x_A           95 LARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKARE  147 (416)
T ss_dssp             HHHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHT
T ss_pred             HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHH
Confidence            3455666665  5567899999999999999999974  48999999 678888874

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.32  E-value=0.00047  Score=58.12  Aligned_cols=64  Identities=19%  Similarity=0.146  Sum_probs=49.8

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCCC-C--CcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAIS-P--ADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~p-~--~D~~~  207 (209)
                      +.+..++||+|+++|.++..++++  +.+++.+|..++-.... ..++|+++.+|.|+-.| .  +|+++
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vv  275 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLM-DTGQVTWLREDGFKFRPTRSNISWMV  275 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHH-TTTCEEEECSCTTTCCCCSSCEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhc-cCCCeEEEeCccccccCCCCCcCEEE
Confidence            456789999999999999999998  67899999744333222 46899999999998433 2  78775

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.26  E-value=0.00026  Score=60.36  Aligned_cols=66  Identities=12%  Similarity=-0.032  Sum_probs=53.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc------CCCC-eEEEEccCCC----CCCC-CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES------DLVN-LKYVGGDMFK----AISP-ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~------~~~r-i~~~~gD~~~----~~p~-~D~~~l  208 (209)
                      +..+|||++||+|.+++.++++.++ .+++.+|+ |..++.+++      ..++ ++++.+|.++    .++. +|+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4679999999999999999998776 47899999 777777664      3455 9999999865    2333 899986

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.13  E-value=0.00046  Score=56.42  Aligned_cols=59  Identities=17%  Similarity=0.158  Sum_probs=44.5

Q ss_pred             ccCCCeEEEecC------CccHHHHHHHHHCC-CCeEEEeechHHHhhcccCCCCeEE-EEccCCC-CCCC-CcEEEe
Q 046346          141 FEGLNSLVDVGG------GTGTAAKAIAKAFP-KLECTCFDLPHVVNGLESDLVNLKY-VGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGg------G~G~~~~~l~~~~P-~l~~~~~Dlp~v~~~a~~~~~ri~~-~~gD~~~-~~p~-~D~~~l  208 (209)
                      +.+..+||||||      |+|.  ..++++.| +.+++++|+.+.+       .++++ +.+|+.+ +.+. +|+|+.
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v-------~~v~~~i~gD~~~~~~~~~fD~Vvs  129 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV-------SDADSTLIGDCATVHTANKWDLIIS  129 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB-------CSSSEEEESCGGGCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC-------CCCEEEEECccccCCccCcccEEEE
Confidence            456789999999      5577  45567777 6899999995441       47889 9999987 4444 899874

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.95  E-value=0.0024  Score=53.10  Aligned_cols=77  Identities=12%  Similarity=0.127  Sum_probs=61.1

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhcccC-CCCeEEEEccCCC--------
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFK--------  198 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~~-~~ri~~~~gD~~~--------  198 (209)
                      ...+++.+.  ..+...+||..+|.|..+..|+++. |+.+++++|+ |.+++.|+.+ .+|++++.++|-+        
T Consensus        46 l~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~  123 (347)
T 3tka_A           46 LDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAER  123 (347)
T ss_dssp             THHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence            456667666  5567899999999999999999995 8899999999 7888887543 5799999999875        


Q ss_pred             CCC-CCcEEEe
Q 046346          199 AIS-PADAVVL  208 (209)
Q Consensus       199 ~~p-~~D~~~l  208 (209)
                      .++ ..|.+++
T Consensus       124 g~~~~vDgILf  134 (347)
T 3tka_A          124 DLIGKIDGILL  134 (347)
T ss_dssp             TCTTCEEEEEE
T ss_pred             CCCCcccEEEE
Confidence            123 2677765

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.83  E-value=0.0011  Score=56.04  Aligned_cols=65  Identities=18%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C------------CCCeEEEEccCCCC-------CC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D------------LVNLKYVGGDMFKA-------IS  201 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~------------~~ri~~~~gD~~~~-------~p  201 (209)
                      ++++||-||||.|..++++++ ||.-+++++|+ |.|++.+++ +            .+|++.+.+|.++-       -.
T Consensus       205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            468999999999999999997 56678999999 889988875 1            25789999997641       12


Q ss_pred             CCcEEEe
Q 046346          202 PADAVVL  208 (209)
Q Consensus       202 ~~D~~~l  208 (209)
                      .+|+|++
T Consensus       284 ~yDvIIv  290 (381)
T 3c6k_A          284 EFDYVIN  290 (381)
T ss_dssp             CEEEEEE
T ss_pred             ceeEEEE
Confidence            3888874

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.77  E-value=0.0012  Score=59.97  Aligned_cols=65  Identities=18%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHH----C---------CCCeEEEeechH-HHhhcc-----cCCCCeEEEEccCCC-CC--
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKA----F---------PKLECTCFDLPH-VVNGLE-----SDLVNLKYVGGDMFK-AI--  200 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~----~---------P~l~~~~~Dlp~-v~~~a~-----~~~~ri~~~~gD~~~-~~--  200 (209)
                      +...|+|||||+|.++...+++    .         ...+++.+|-.. ++...+     ...++|+++.+|..+ .+  
T Consensus       409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHH
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccc
Confidence            3578999999999997543222    2         234788888843 222211     257899999999987 55  


Q ss_pred             ----CC-CcEEE
Q 046346          201 ----SP-ADAVV  207 (209)
Q Consensus       201 ----p~-~D~~~  207 (209)
                          |. +|+++
T Consensus       489 ~~~~~ekVDIIV  500 (745)
T 3ua3_A          489 KDRGFEQPDIIV  500 (745)
T ss_dssp             HHTTCCCCSEEE
T ss_pred             ccCCCCcccEEE
Confidence                55 99986

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.69  E-value=0.003  Score=49.95  Aligned_cols=76  Identities=14%  Similarity=0.153  Sum_probs=52.6

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhh----ccc-CCCCeEEEEc-cCCCCCCC-
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG----LES-DLVNLKYVGG-DMFKAISP-  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~----a~~-~~~ri~~~~g-D~~~~~p~-  202 (209)
                      ..++.+.+.  +....+|||+||++|.++.-++....-.+++.+|+-..-..    .+. ...-|+|..+ |++.--|. 
T Consensus        67 L~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~  144 (267)
T 3p8z_A           67 LQWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK  144 (267)
T ss_dssp             HHHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence            345555553  55667999999999999998887776668999998322111    111 2467999999 97652223 


Q ss_pred             CcEEE
Q 046346          203 ADAVV  207 (209)
Q Consensus       203 ~D~~~  207 (209)
                      +|.++
T Consensus       145 ~Dtll  149 (267)
T 3p8z_A          145 CDTLL  149 (267)
T ss_dssp             CSEEE
T ss_pred             ccEEE
Confidence            88876

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=96.34  E-value=0.0061  Score=54.00  Aligned_cols=66  Identities=14%  Similarity=0.061  Sum_probs=48.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCC------------------CCeEEEeec-hHHHhhccc-----CCC-----CeEEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFP------------------KLECTCFDL-PHVVNGLES-----DLV-----NLKYVG  193 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P------------------~l~~~~~Dl-p~v~~~a~~-----~~~-----ri~~~~  193 (209)
                      ...+|+|.+||+|.++..+.+...                  ..+++++|+ |.++..|+.     ...     ++.+..
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            457999999999999998887632                  246899999 677777663     112     278899


Q ss_pred             ccCCCC----CCCCcEEEe
Q 046346          194 GDMFKA----ISPADAVVL  208 (209)
Q Consensus       194 gD~~~~----~p~~D~~~l  208 (209)
                      +|.+..    .+.+|+|+.
T Consensus       249 gDtL~~~~~~~~~fD~Vv~  267 (541)
T 2ar0_A          249 GNTLGSDGENLPKAHIVAT  267 (541)
T ss_dssp             SCTTSHHHHTSCCEEEEEE
T ss_pred             CCCcccccccccCCeEEEE
Confidence            999872    234899875

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=96.22  E-value=0.0033  Score=55.72  Aligned_cols=65  Identities=17%  Similarity=0.060  Sum_probs=47.5

Q ss_pred             CCeEEEecCCccHHHHHHHHHCC---------------CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-C-
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFP---------------KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A-  199 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P---------------~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~-  199 (209)
                      ..+|+|.+||+|.++.++++..+               ..++.++|+ |.++..|+.      ...++.+..+|.+. + 
T Consensus       245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~  324 (544)
T 3khk_A          245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ  324 (544)
T ss_dssp             SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred             CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence            34999999999999998876543               567899999 677777663      23455558899886 3 


Q ss_pred             CC--CCcEEEe
Q 046346          200 IS--PADAVVL  208 (209)
Q Consensus       200 ~p--~~D~~~l  208 (209)
                      .+  .+|+|+.
T Consensus       325 ~~~~~fD~Iv~  335 (544)
T 3khk_A          325 HPDLRADFVMT  335 (544)
T ss_dssp             CTTCCEEEEEE
T ss_pred             cccccccEEEE
Confidence            23  2899874

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.15  E-value=0.013  Score=49.06  Aligned_cols=55  Identities=11%  Similarity=0.151  Sum_probs=42.3

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEEccCCC
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK  198 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~~ri~~~~gD~~~  198 (209)
                      ...|||||.|.|.++..|+++...-+.+++++ +..++.-++  ..++++.+.+|+++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  116 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence            47899999999999999999865556888887 333333322  25789999999975

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.09  E-value=0.011  Score=52.36  Aligned_cols=66  Identities=15%  Similarity=0.028  Sum_probs=51.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhhccc------CC-CCeEEEEccCCCC-CC-----CCcE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA-IS-----PADA  205 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~---P~l~~~~~Dl-p~v~~~a~~------~~-~ri~~~~gD~~~~-~p-----~~D~  205 (209)
                      ...+|+|.+||+|.++..++++.   +..++.++|+ +.+...|+.      .. +++.+..+|.+.. +|     .+|+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            45799999999999999999985   4678999999 677776653      11 4688999999873 33     2899


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |+.
T Consensus       301 Iva  303 (542)
T 3lkd_A          301 VLM  303 (542)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=96.01  E-value=0.011  Score=54.64  Aligned_cols=67  Identities=15%  Similarity=0.159  Sum_probs=47.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCC---CCeEEEeec-hHHHhhc--cc------C---CCCeEEEEccCCCC----CCC
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFP---KLECTCFDL-PHVVNGL--ES------D---LVNLKYVGGDMFKA----ISP  202 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P---~l~~~~~Dl-p~v~~~a--~~------~---~~ri~~~~gD~~~~----~p~  202 (209)
                      ....+|+|.|||+|.++.+++++.+   ..+++++|+ |.++..|  +.      .   .....+...|++++    ...
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            3467999999999999999999987   357899999 6677666  21      1   12235566677762    223


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+|+.
T Consensus       400 FDVVIg  405 (878)
T 3s1s_A          400 VSVVVM  405 (878)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            898874

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=95.99  E-value=0.015  Score=46.90  Aligned_cols=35  Identities=20%  Similarity=0.159  Sum_probs=28.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL  175 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl  175 (209)
                      +....+|||+|||+|.++.-++++.+-.+++.+|+
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dV  106 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTL  106 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEE
Confidence            55667999999999999999888877656655665

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=95.89  E-value=0.0095  Score=47.61  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=44.8

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHH--CCCCeE--EEeechHHHhhcccCCCCe---EEEEc-cCCCCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA--FPKLEC--TCFDLPHVVNGLESDLVNL---KYVGG-DMFKAIS  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~--~P~l~~--~~~Dlp~v~~~a~~~~~ri---~~~~g-D~~~~~p  201 (209)
                      ..++.+.+  .+.+..+|||+||++|.++.-.+++  -...++  +..|+ +...... ....+   .|..| ||++.-|
T Consensus        62 L~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~-~~~Gv~~i~~~~G~Df~~~~~  137 (269)
T 2px2_A           62 LRWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLM-QSYGWNIVTMKSGVDVFYKPS  137 (269)
T ss_dssp             HHHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCC-CSTTGGGEEEECSCCGGGSCC
T ss_pred             HHHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcc-cCCCceEEEeeccCCccCCCC
Confidence            34555553  4677899999999999999999886  222123  34443 1111100 11344   55557 9998444


Q ss_pred             C-CcEEE
Q 046346          202 P-ADAVV  207 (209)
Q Consensus       202 ~-~D~~~  207 (209)
                      . +|+++
T Consensus       138 ~~~DvVL  144 (269)
T 2px2_A          138 EISDTLL  144 (269)
T ss_dssp             CCCSEEE
T ss_pred             CCCCEEE
Confidence            3 89886

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.87  E-value=0.0091  Score=48.64  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=50.2

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHh----hcccC-CCCeEEEEc-cCCCCC-CC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVN----GLESD-LVNLKYVGG-DMFKAI-SP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~----~a~~~-~~ri~~~~g-D~~~~~-p~  202 (209)
                      ..++.+.+.  +....+|||+||++|.++.-++....-.+++.+|+-..-.    ..+++ ..-|.|+.+ |++.-- ..
T Consensus        83 L~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~  160 (321)
T 3lkz_A           83 LRWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC  160 (321)
T ss_dssp             HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence            344555543  5566799999999999999777777666899999832200    01112 234889988 876522 22


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+++.
T Consensus       161 ~D~ivc  166 (321)
T 3lkz_A          161 CDTLLC  166 (321)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            787763

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.78  E-value=0.03  Score=47.28  Aligned_cols=64  Identities=23%  Similarity=0.303  Sum_probs=43.1

Q ss_pred             CCeEEEecCCccHHHHHH--------HHHC-------CCCeEEEeechH-----HHhhcccC-------------C---C
Q 046346          144 LNSLVDVGGGTGTAAKAI--------AKAF-------PKLECTCFDLPH-----VVNGLESD-------------L---V  187 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l--------~~~~-------P~l~~~~~Dlp~-----v~~~a~~~-------------~---~  187 (209)
                      .-+|+|+|||+|..+..+        .+++       |++++..-|+|.     +.......             .   -
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            578999999999988876        4454       888999999972     22211110             0   1


Q ss_pred             CeEEEEccCCC-CCCC--CcEEE
Q 046346          188 NLKYVGGDMFK-AISP--ADAVV  207 (209)
Q Consensus       188 ri~~~~gD~~~-~~p~--~D~~~  207 (209)
                      =+.-++|.|+. -+|.  .|+++
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~  155 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFH  155 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEE
T ss_pred             EEEecChhhhcccCCCcceEEEE
Confidence            13457788988 4665  78875

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=95.66  E-value=0.01  Score=47.92  Aligned_cols=45  Identities=20%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346          129 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL  175 (209)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl  175 (209)
                      ...++.+.+.  +....+|||+|||+|.++.-++++.|-.+++.+|+
T Consensus        78 KL~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv  122 (282)
T 3gcz_A           78 KLRWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL  122 (282)
T ss_dssp             HHHHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence            3445555553  56677999999999999999998888777777887

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=95.56  E-value=0.048  Score=41.97  Aligned_cols=54  Identities=15%  Similarity=0.204  Sum_probs=38.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C--CCCeEEEEccCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D--LVNLKYVGGDMF  197 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~--~~ri~~~~gD~~  197 (209)
                      ..+.++||+||+|  .-+..++ +.++-+++-+|. ++..+.|++      .  .++|+++.||..
T Consensus        28 l~~a~~VLEiGtG--ySTl~lA-~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~   90 (202)
T 3cvo_A           28 YEEAEVILEYGSG--GSTVVAA-ELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG   90 (202)
T ss_dssp             HHHCSEEEEESCS--HHHHHHH-TSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred             hhCCCEEEEECch--HHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence            3467899999985  4444444 456788999997 566666653      3  578999999954

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.27  E-value=0.06  Score=44.68  Aligned_cols=57  Identities=19%  Similarity=0.231  Sum_probs=48.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc----C----------------------CCCeEEEEcc
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----D----------------------LVNLKYVGGD  195 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~----~----------------------~~ri~~~~gD  195 (209)
                      .+...||.+|||.....-.+...+|+++++=+|+|++++.-++    .                      .+++.+++.|
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4578999999999999999999999999999999999865332    1                      3789999999


Q ss_pred             CCC
Q 046346          196 MFK  198 (209)
Q Consensus       196 ~~~  198 (209)
                      +.+
T Consensus       176 L~d  178 (334)
T 1rjd_A          176 LND  178 (334)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            987

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=95.25  E-value=0.011  Score=47.36  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=27.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHH-------CCC-----CeEEEeec
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKA-------FPK-----LECTCFDL  175 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~-------~P~-----l~~~~~Dl  175 (209)
                      +..+|||||+|+|..+..+++.       +|+     ++++.++.
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~  104 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK  104 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence            4579999999999999887765       784     67888886

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.20  E-value=0.029  Score=45.58  Aligned_cols=40  Identities=23%  Similarity=0.158  Sum_probs=33.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      ....|||++||+|..+.++++.  +-+++++|+ |..++.|++
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE  275 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence            4679999999999999999887  468999999 677777664

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=94.59  E-value=0.017  Score=42.74  Aligned_cols=52  Identities=8%  Similarity=-0.027  Sum_probs=39.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEEccCCC-CC---CC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AI---SP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~~ri~~~~gD~~~-~~---p~--~D~~~l  208 (209)
                      .....+|||||||.                +.+|. +.+++.|++ ...++++..+|+.+ +.   +.  +|+++.
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~   69 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILS   69 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEE
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEE
Confidence            45678999999996                23787 788888875 34469999999876 33   43  899875

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=94.54  E-value=0.07  Score=45.14  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=28.3

Q ss_pred             CCeEEEecCCccHHHHHHHHH-----------------CCCCeEEEeech
Q 046346          144 LNSLVDVGGGTGTAAKAIAKA-----------------FPKLECTCFDLP  176 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~-----------------~P~l~~~~~Dlp  176 (209)
                      .-+|+|+||++|..+..+...                 .|+++++.-|+|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp  102 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF  102 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence            678999999999999877766                 588889999997

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.46  E-value=0.36  Score=40.79  Aligned_cols=64  Identities=19%  Similarity=0.325  Sum_probs=41.7

Q ss_pred             cHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHH---C----CCCeEEEeechHHHhh
Q 046346          112 PKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA---F----PKLECTCFDLPHVVNG  181 (209)
Q Consensus       112 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~---~----P~l~~~~~Dlp~v~~~  181 (209)
                      |+....|...+..+-.   . +.+...  .+..-.||++|.|+|.++..+++.   .    ..++.++++..+.+..
T Consensus        55 peis~~FGe~la~~~~---~-~w~~~g--~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~  125 (387)
T 1zkd_A           55 PEISQMFGELLGLWSA---S-VWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQ  125 (387)
T ss_dssp             HHHCHHHHHHHHHHHH---H-HHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHH
T ss_pred             CchHHHHHHHHHHHHH---H-HHHHcC--CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHH
Confidence            6666677776653221   1 112222  344568999999999999988875   2    3458899998665543

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=93.27  E-value=0.083  Score=43.00  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=30.9

Q ss_pred             cccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046346          140 VFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP  176 (209)
Q Consensus       140 ~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp  176 (209)
                      .+.+..+|||+||++|.++.-++++.+-..++++|+.
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg  114 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLG  114 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEec
Confidence            3567799999999999999999998776667778873

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=93.20  E-value=0.098  Score=42.35  Aligned_cols=66  Identities=12%  Similarity=0.075  Sum_probs=47.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeec----hH-----------------------HHhhccc------
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAF-----PKLECTCFDL----PH-----------------------VVNGLES------  184 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~-----P~l~~~~~Dl----p~-----------------------v~~~a~~------  184 (209)
                      .+..||++|+..|.-+..+++..     |+-+++++|.    |+                       .++.+++      
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            47899999999999998877654     5778999994    11                       1222332      


Q ss_pred             C-CCCeEEEEccCCCC---CC-C-CcEEEe
Q 046346          185 D-LVNLKYVGGDMFKA---IS-P-ADAVVL  208 (209)
Q Consensus       185 ~-~~ri~~~~gD~~~~---~p-~-~D~~~l  208 (209)
                      . .++|+++.||+.+-   +| . +|++++
T Consensus       186 l~~~~I~li~Gda~etL~~~~~~~~d~vfI  215 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRM  215 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTTCCCCCEEEEEE
T ss_pred             CCcCceEEEEeCHHHHHhhCCCCCEEEEEE
Confidence            2 38999999999773   33 2 788765

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=93.00  E-value=0.13  Score=43.15  Aligned_cols=66  Identities=17%  Similarity=0.266  Sum_probs=41.1

Q ss_pred             cCCCeEEEecCCccHHHHH--------HHHH--------CCCCeEEEeech-----HHHhhcccC--CCC---eEEEEcc
Q 046346          142 EGLNSLVDVGGGTGTAAKA--------IAKA--------FPKLECTCFDLP-----HVVNGLESD--LVN---LKYVGGD  195 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~--------l~~~--------~P~l~~~~~Dlp-----~v~~~a~~~--~~r---i~~~~gD  195 (209)
                      +..-+|+|+||++|..+..        +.++        .|+.++..-|+|     .+.......  ..+   +.-++|.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence            4557899999999966553        3332        577888999997     222221110  012   3446788


Q ss_pred             CCC-CCCC--CcEEE
Q 046346          196 MFK-AISP--ADAVV  207 (209)
Q Consensus       196 ~~~-~~p~--~D~~~  207 (209)
                      |+. -+|.  .|+++
T Consensus       130 Fy~rlfp~~S~d~v~  144 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIH  144 (359)
T ss_dssp             SSSCCSCTTCBSCEE
T ss_pred             hhhccCCCCceEEEE
Confidence            988 4675  77764

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=89.97  E-value=0.55  Score=37.07  Aligned_cols=40  Identities=23%  Similarity=0.180  Sum_probs=33.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcc
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE  183 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~  183 (209)
                      .....|||..||+|+.+.+..+.  +-+++++|+ |..++.++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~  251 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN  251 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence            35679999999999999999887  568999999 56666655

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=89.09  E-value=1.5  Score=35.80  Aligned_cols=55  Identities=18%  Similarity=0.263  Sum_probs=43.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhhccc--------CCCCeEEEEccCCC
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFK  198 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dlp~v~~~a~~--------~~~ri~~~~gD~~~  198 (209)
                      .+...||++|||-=.....+.  .| +++++-+|.|.|++..++        ..++..+++.|+.+
T Consensus       101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d  164 (310)
T 2uyo_A          101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ  164 (310)
T ss_dssp             TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred             hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence            456789999999888866664  35 478899999999986554        25688999999986

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=87.18  E-value=0.66  Score=37.46  Aligned_cols=63  Identities=16%  Similarity=0.019  Sum_probs=49.1

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCCC----CC---CCcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA----IS---PADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~~----~p---~~D~~~l  208 (209)
                      ...++|+=+|||.++.++++  +.-+++.+|+ +..++..++   ..+|++++..|.++.    .|   .+|+|++
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFI  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence            56789999999999999999  4578999999 666665554   246899999997651    12   3899986

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=87.17  E-value=0.88  Score=38.56  Aligned_cols=40  Identities=13%  Similarity=0.114  Sum_probs=32.5

Q ss_pred             cCCCeEEEecCCccHHHHHHH-HHCCC-CeEEEeec-hHHHhh
Q 046346          142 EGLNSLVDVGGGTGTAAKAIA-KAFPK-LECTCFDL-PHVVNG  181 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~-~~~P~-l~~~~~Dl-p~v~~~  181 (209)
                      .+..+++|||++.|.++..++ +..|. .+++.++- |...+.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~  267 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT  267 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence            466899999999999999988 67776 78999996 555443

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=86.87  E-value=4.4  Score=29.76  Aligned_cols=58  Identities=16%  Similarity=0.191  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346          114 LNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL  175 (209)
Q Consensus       114 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl  175 (209)
                      +...|.+-|..... -..+......   .-..-|+|+|=|+|.-=..+.+.+|+-++.++|+
T Consensus        15 RLDsfirRltaQR~-~L~~a~~~v~---~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           15 RLDLFIDRMVSQRA-CLEHAIAQTA---GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHTT---TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHhc---CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            34556555553222 1233333332   3357899999999999999999999999999998

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=86.06  E-value=1.6  Score=38.30  Aligned_cols=66  Identities=11%  Similarity=0.004  Sum_probs=43.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CC--
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAF-------------PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI--  200 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~-------------P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~--  200 (209)
                      ...+|+|-.||+|.++.+..++.             .+....++|+ +.+...|+-     ..+.-.+..+|.+. +.  
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~  296 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE  296 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh
Confidence            35699999999999998876542             1346788998 555555542     22334567788775 21  


Q ss_pred             --C--CCcEEEe
Q 046346          201 --S--PADAVVL  208 (209)
Q Consensus       201 --p--~~D~~~l  208 (209)
                        +  .+|+|+.
T Consensus       297 ~~~~~~fD~Il~  308 (530)
T 3ufb_A          297 MGDKDRVDVILT  308 (530)
T ss_dssp             CCGGGCBSEEEE
T ss_pred             hcccccceEEEe
Confidence              1  3898874

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=85.68  E-value=1.3  Score=36.95  Aligned_cols=68  Identities=18%  Similarity=0.142  Sum_probs=49.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------CCCCeEEEEccCCC--C-CCC-Cc
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------DLVNLKYVGGDMFK--A-ISP-AD  204 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------~~~ri~~~~gD~~~--~-~p~-~D  204 (209)
                      -....+|||+.+|+|.=+..|++..++-+++..|+ +.-+...++           ...++.....|...  + .+. +|
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            44568999999999999999999888777889998 333332221           23578888888765  2 344 89


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      .|++
T Consensus       226 ~VLl  229 (359)
T 4fzv_A          226 RVLV  229 (359)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=84.76  E-value=0.54  Score=32.43  Aligned_cols=45  Identities=22%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             cCchhHhhhCCCCCCHHHHHH-----------------HHhCCCCC-CCCCceecCHhhhhhhc
Q 046346           38 LGIPDIINKHGKPMTLNELQK-----------------LVSSGNNN-DEEQGYVLTNASKLLLK   83 (209)
Q Consensus        38 lglfd~L~~~g~~~t~~eLA~-----------------L~~~g~~e-~~~~~y~~t~~s~~l~~   83 (209)
                      ..|++.|..+ +++|+.+||+                 |...|+++ ...+.|.+|+.++.+..
T Consensus        16 ~~IL~~L~~~-g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l~   78 (111)
T 3b73_A           16 DRILEIIHEE-GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN   78 (111)
T ss_dssp             HHHHHHHHHH-SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHHH
Confidence            4455666554 4677777765                 77888854 34458999999975544

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=84.74  E-value=0.3  Score=32.35  Aligned_cols=47  Identities=17%  Similarity=0.202  Sum_probs=34.7

Q ss_pred             HHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCCCCceecCHhhh
Q 046346           30 MTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDEEQGYVLTNASK   79 (209)
Q Consensus        30 ~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~~~~y~~t~~s~   79 (209)
                      .++..-.++.|+..| .  ++.|+.|||+               |...|+++...+.|.+|+.++
T Consensus        26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~g~y~l~~~g~   87 (96)
T 1y0u_A           26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVGERWVVTDAGK   87 (96)
T ss_dssp             HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECTTTC
T ss_pred             HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCEEEECCCch
Confidence            444455677788999 5  6899999999               678898442226899998764

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=83.29  E-value=0.97  Score=38.71  Aligned_cols=61  Identities=25%  Similarity=0.408  Sum_probs=39.4

Q ss_pred             CCcHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-----CCeEEEeechHHH
Q 046346          110 DEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-----KLECTCFDLPHVV  179 (209)
Q Consensus       110 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-----~l~~~~~Dlp~v~  179 (209)
                      ..|+....|...+..+       +++.+.  ..+..+|+++|.|+|.++..+++...     ..+.++++..+.+
T Consensus       113 TAPeiS~~FGe~la~~-------~~~~~~--~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~L  178 (432)
T 4f3n_A          113 TAPELSPLFAQTLARP-------VAQALD--ASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGEL  178 (432)
T ss_dssp             SCGGGHHHHHHHHHHH-------HHHHHH--HHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSS
T ss_pred             CchhhhHHHHHHHHHH-------HHHHHH--hcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHH
Confidence            3466777777766532       222222  12357999999999999998876542     2368888874333

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=82.43  E-value=0.33  Score=30.14  Aligned_cols=39  Identities=15%  Similarity=0.298  Sum_probs=27.6

Q ss_pred             HcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCC-CCCCceecC
Q 046346           37 QLGIPDIINKHGKPMTLNELQK---------------LVSSGNNN-DEEQGYVLT   75 (209)
Q Consensus        37 ~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e-~~~~~y~~t   75 (209)
                      +..|++.|..++.|+|..|||+               |...|+++ ...+.|.++
T Consensus        12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y~lg   66 (67)
T 2heo_A           12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYWSIG   66 (67)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence            4457777876546899999999               67788744 445677764

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=81.89  E-value=4.4  Score=28.12  Aligned_cols=48  Identities=17%  Similarity=0.276  Sum_probs=34.5

Q ss_pred             HHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCCC----CC---ceecCHhhhhhhc
Q 046346           35 SIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNNDE----EQ---GYVLTNASKLLLK   83 (209)
Q Consensus        35 a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~~----~~---~y~~t~~s~~l~~   83 (209)
                      ..++.++..|... +++|..+||+               |...|+++..    +.   .+.+|+.|+.+..
T Consensus        37 ~~~~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~  106 (142)
T 3ech_A           37 PPDVHVLKLIDEQ-RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL  106 (142)
T ss_dssp             HHHHHHHHHHHHT-TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence            5666788888876 6899999999               7788884421    11   3789998875553

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=81.76  E-value=1.3  Score=36.09  Aligned_cols=59  Identities=19%  Similarity=0.178  Sum_probs=39.9

Q ss_pred             ccCCCeEEEecC------CccHHHHHHHHHCCC-CeEEEeechHHHhhcccCCCCeEEEEccCCCC-CCC-CcEEE
Q 046346          141 FEGLNSLVDVGG------GTGTAAKAIAKAFPK-LECTCFDLPHVVNGLESDLVNLKYVGGDMFKA-ISP-ADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGg------G~G~~~~~l~~~~P~-l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~-~p~-~D~~~  207 (209)
                      .+...+|||+|.      .+|.+  .+.+..|. ...+..|+.++...+    +  .++.||+.+. ... +|+|+
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~--~~IqGD~~~~~~~~k~DLVI  174 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D--STLIGDCATVHTANKWDLII  174 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S--EEEESCGGGEEESSCEEEEE
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C--eEEEccccccccCCCCCEEE
Confidence            456789999995      88884  44556886 689999986554321    1  4488887652 222 78775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	2e-29
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	6e-28
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	2e-22
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	2e-16
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	3e-15
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	1e-13
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	6e-13
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	3e-10
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	5e-09
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	2e-08

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  107 bits (268), Expect = 2e-29
 Identities = 61/128 (47%), Positives = 80/128 (62%), Gaps = 9/128 (7%)

Query: 89  QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVF 141
            +L+ W   +D T FG        ++    P+ N  FN+AMASD++L  ++ ++ C  VF
Sbjct: 20  HELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCDFVF 78

Query: 142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAIS 201
           +GL S+VDVGGGTGT AK I + FPKL+C  FD P VV  L     NL YVGGDMF +I 
Sbjct: 79  DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS-NNLTYVGGDMFTSIP 137

Query: 202 PADAVVLK 209
            ADAV+LK
Sbjct: 138 NADAVLLK 145

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  103 bits (258), Expect = 6e-28
 Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 9/127 (7%)

Query: 90  QLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFE 142
             +    ++D   F         E+ G + K+N  FN++M          M+ +    FE
Sbjct: 22  NFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML-EIYTGFE 80

Query: 143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISP 202
           G+++LVDVGGG+G   + I   +P ++   FDLP V+      L  +++VGGDMF ++  
Sbjct: 81  GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP-PLSGIEHVGGDMFASVPQ 139

Query: 203 ADAVVLK 209
            DA++LK
Sbjct: 140 GDAMILK 146

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 84.9 bits (210), Expect = 2e-22
 Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 21/97 (21%)

Query: 10  TEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQKLVSSGNNN--- 66
           +E  +AQ  ++ HI+ FI+SM+LK ++++ IP+II  HGKP++L+ L  ++   ++    
Sbjct: 4   SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN 63

Query: 67  ------------------DEEQGYVLTNASKLLLKDN 85
                              EE+ Y LT AS+LL++ +
Sbjct: 64  VRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGS 100

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 72.6 bits (177), Expect = 2e-16
 Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 14/131 (10%)

Query: 91  LRSWFQNDD-----PTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCK 138
           + SW+   D       PF         EY G +P+ N  FN+ M+  + +    ++ +  
Sbjct: 18  MESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKIL-ETY 76

Query: 139 NVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK 198
             FEGL SLVDVGGGTG     I   +P ++   FDLPHV+    S    +++VGGDMF 
Sbjct: 77  TGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYP-GVEHVGGDMFV 135

Query: 199 AISPADAVVLK 209
           +I  ADAV +K
Sbjct: 136 SIPKADAVFMK 146

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 66.8 bits (163), Expect = 3e-15
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 33/105 (31%)

Query: 14  EAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKP---MTLNELQK------------ 58
            A +       N +    L  +I L + +II K   P   M+ +E+              
Sbjct: 5   SACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLP 64

Query: 59  ---------LVSSG---------NNNDEEQGYVLTNASKLLLKDN 85
                    L S            +   E+ Y L+   K L+ D 
Sbjct: 65  NRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE 109

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 65.4 bits (158), Expect = 1e-13
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 103 FGT---EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAK 159
           +G    E    +  L + F+  M+ D  LA           +  +  ++DVGGG G    
Sbjct: 40  YGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLA 97

Query: 160 AIAKAFPKLECTCFDLPHVVN 180
           AIA   P L  T  +L     
Sbjct: 98  AIALRAPHLRGTLVELAGPAE 118

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 60.6 bits (147), Expect = 6e-13
 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 30/105 (28%)

Query: 10  TEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK----------- 58
               EA +         +  M LK +++L + +II K G    ++ ++            
Sbjct: 2   ISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDA 61

Query: 59  ----------LVSSG---------NNNDEEQGYVLTNASKLLLKD 84
                     L              +   ++ Y L   +K L+K+
Sbjct: 62  PVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN 106

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 55.8 bits (133), Expect = 3e-10
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 106 EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF 165
           E     P L   F+  +A D  +A           +  +  ++DVGGG G  A AIA+  
Sbjct: 45  EDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRA 102

Query: 166 PKLECTCFDLPHV 178
           P +  T  ++   
Sbjct: 103 PHVSATVLEMAGT 115

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 49.4 bits (118), Expect = 5e-09
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 20/81 (24%)

Query: 19 VWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSG 63
          +  ++ N +  M L+ +  L + D +       TL  L                 L   G
Sbjct: 11 LLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDTHPQALSRLVRHLTVVG 68

Query: 64 ---NNNDEEQGYVLTNASKLL 81
                 + +    T    LL
Sbjct: 69 VLEGGEKQGRPLRPTRLGMLL 89

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 47.5 bits (113), Expect = 2e-08
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 18/79 (22%)

Query: 22 HIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGN-N 65
           + +    M ++ +  L + D I       T+  L                 LV+ G   
Sbjct: 8  RLGSLHTPMVVRTAATLRLVDHI--LAGARTVKALAARTDTRPEALLRLIRHLVAIGLLE 65

Query: 66 NDEEQGYVLTNASKLLLKD 84
           D    +V T   +LL  D
Sbjct: 66 EDAPGEFVPTEVGELLADD 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.92
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.91
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.9
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.86
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.85
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.53
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.23
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.13
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.09
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.08
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.0
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.97
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.95
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.95
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.94
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.93
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.91
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.85
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.84
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.84
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.83
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.78
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.74
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.69
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.68
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.68
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.66
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.65
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.64
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.64
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.63
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.61
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.6
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.57
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.54
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.52
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.5
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.49
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.47
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.47
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.45
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.43
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.42
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.42
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.41
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.39
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.38
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.37
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.37
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.36
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.35
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.35
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.34
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.33
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.32
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.31
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.3
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.3
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.25
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.22
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.22
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.17
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.14
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.89
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.86
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.84
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.83
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.82
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.81
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.81
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.81
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.72
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.69
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.68
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.67
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.66
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.63
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.58
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.49
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.42
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.34
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.31
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.21
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.18
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.08
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.07
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.97
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.95
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	96.94
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	96.94
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.88
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	96.86
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.78
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	96.38
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.2
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.6
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.54
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	95.32
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	94.83
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	93.63
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	93.43
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	93.21
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	90.69
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	88.99
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	87.72
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	87.58
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	85.49
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	83.7
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	82.34
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	81.11
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	80.45
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	80.44

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.92  E-value=4.3e-25  Score=176.24  Aligned_cols=119  Identities=33%  Similarity=0.616  Sum_probs=104.1

Q ss_pred             cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHH
Q 046346           89 QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAI  161 (209)
Q Consensus        89 ~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l  161 (209)
                      .+|.++++++++++|+.       +|+.++|+..+.|+++|...+....+.+++.++ .|++..+|||||||+|.++.++
T Consensus        21 ~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~~~~~vlDiGGG~G~~~~~l   99 (244)
T d1fp1d2          21 MNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELI   99 (244)
T ss_dssp             TTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHH
T ss_pred             HHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCCcEEEEecCCCcHHHHHH
Confidence            58899999887666654       888999999999999999998888899999997 3688999999999999999999


Q ss_pred             HHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCCCCCcEEEeC
Q 046346          162 AKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK  209 (209)
Q Consensus       162 ~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~p~~D~~~l~  209 (209)
                      +++||+++++++|+|++++.+. ..+||++++||||+++|++|+|+|+
T Consensus       100 ~~~~P~l~~~v~Dlp~vi~~~~-~~~ri~~~~gd~~~~~p~~D~~~l~  146 (244)
T d1fp1d2         100 ISKYPLIKGINFDLPQVIENAP-PLSGIEHVGGDMFASVPQGDAMILK  146 (244)
T ss_dssp             HHHCTTCEEEEEECHHHHTTCC-CCTTEEEEECCTTTCCCCEEEEEEE
T ss_pred             HHHCCCCeEEEecchhhhhccC-CCCCeEEecCCcccccccceEEEEe
Confidence            9999999999999999998877 6789999999999999999999985

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.91  E-value=1.1e-24  Score=173.99  Aligned_cols=119  Identities=51%  Similarity=0.905  Sum_probs=104.5

Q ss_pred             cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHH
Q 046346           89 QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAI  161 (209)
Q Consensus        89 ~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l  161 (209)
                      ..|.+|++++.+++|+.       +|+.++|+..++|+++|...+......+.+ +.+.+++..+|||||||+|+++.++
T Consensus        20 ~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~-~~~~~~~~~~vvDvGGG~G~~~~~l   98 (244)
T d1fp2a2          20 HELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFDGLESIVDVGGGTGTTAKII   98 (244)
T ss_dssp             GGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT-CHHHHTTCSEEEEETCTTSHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh-hcccccCceEEEEecCCccHHHHHH
Confidence            78999999987677753       778899999999999999888766555543 3334788999999999999999999


Q ss_pred             HHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCCCCCcEEEeC
Q 046346          162 AKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK  209 (209)
Q Consensus       162 ~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~p~~D~~~l~  209 (209)
                      +++||+++++++|+|+|++.+. ..+||++++||||+++|.+|+|+||
T Consensus        99 ~~~~P~l~~~v~Dlp~vi~~~~-~~~rv~~~~gD~f~~~p~aD~~~l~  145 (244)
T d1fp2a2          99 CETFPKLKCIVFDRPQVVENLS-GSNNLTYVGGDMFTSIPNADAVLLK  145 (244)
T ss_dssp             HHHCTTCEEEEEECHHHHTTCC-CBTTEEEEECCTTTCCCCCSEEEEE
T ss_pred             HHhCCCCeEEEecCHHHHHhCc-ccCceEEEecCcccCCCCCcEEEEE
Confidence            9999999999999999999887 6789999999999999999999985

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.90  E-value=3.8e-24  Score=170.73  Aligned_cols=118  Identities=38%  Similarity=0.736  Sum_probs=106.4

Q ss_pred             cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHH
Q 046346           89 QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAI  161 (209)
Q Consensus        89 ~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l  161 (209)
                      .+|.+++|+|+ ++|+.       +|+.++|+..+.|+++|...+....+.+++.+++ +++..+|||||||+|.+++++
T Consensus        22 ~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~~~~~~vvDvGGG~G~~~~~l   99 (243)
T d1kyza2          22 YHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FEGLKSLVDVGGGTGAVINTI   99 (243)
T ss_dssp             GGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSSCSEEEEETCTTSHHHHHH
T ss_pred             HHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-ccCCcEEEEecCCCcHHHHHH
Confidence            68999999997 45543       7889999999999999999888788888998883 466899999999999999999


Q ss_pred             HHHCCCCeEEEeechHHHhhcccCCCCeEEEEccCCCCCCCCcEEEeC
Q 046346          162 AKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPADAVVLK  209 (209)
Q Consensus       162 ~~~~P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~~~p~~D~~~l~  209 (209)
                      +++||+++++++|+|++++.++ ..+|++++++|||+++|.+|+|+|+
T Consensus       100 ~~~~P~l~~~v~Dlp~vi~~~~-~~~r~~~~~~d~~~~~P~ad~~~l~  146 (243)
T d1kyza2         100 VSKYPTIKGINFDLPHVIEDAP-SYPGVEHVGGDMFVSIPKADAVFMK  146 (243)
T ss_dssp             HHHCTTSEEEEEECTTTTTTCC-CCTTEEEEECCTTTCCCCCSCEECS
T ss_pred             HHHCCCCeEEEcccHHhhhhcc-cCCceEEecccccccCCCcceEEEE
Confidence            9999999999999999998877 6789999999999999999999885

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.86  E-value=1.5e-22  Score=162.61  Aligned_cols=118  Identities=25%  Similarity=0.338  Sum_probs=106.0

Q ss_pred             cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHH
Q 046346           89 QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAI  161 (209)
Q Consensus        89 ~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l  161 (209)
                      .+|.+++|+|. ++|..       +|+.++|+..+.|+++|...+....+.+++.++  |++.++|||||||+|.++..+
T Consensus        23 ~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~vlDvG~G~G~~~~~l   99 (256)
T d1qzza2          23 TGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAI   99 (256)
T ss_dssp             GGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHH
T ss_pred             HHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC--CccCCEEEEECCCCCHHHHHH
Confidence            58999999986 45543       677889999999999999988888899999999  899999999999999999999


Q ss_pred             HHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCCCCCC-CcEEEeC
Q 046346          162 AKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAISP-ADAVVLK  209 (209)
Q Consensus       162 ~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~~~p~-~D~~~l~  209 (209)
                      +++||+++++++|+|++++.+++      ..+|++++.+|+++++|. +|+|+++
T Consensus       100 ~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~  154 (256)
T d1qzza2         100 ALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLS  154 (256)
T ss_dssp             HHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEE
T ss_pred             HHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcc
Confidence            99999999999999999987764      468999999999999987 9999874

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.85  E-value=1.1e-21  Score=157.02  Aligned_cols=118  Identities=25%  Similarity=0.423  Sum_probs=105.4

Q ss_pred             cchhhhhhcCCCCCccc-------cccCCCcHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHH
Q 046346           89 QQLRSWFQNDDPTPFGT-------EYDGDEPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAI  161 (209)
Q Consensus        89 ~~l~~~l~~~~~~~f~~-------~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l  161 (209)
                      .+|++++|+|+ ++|..       +|+.++|+..+.|+.+|...+....+.+++.++  |++.++|||||||+|.++..+
T Consensus        22 ~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G~~~~~l   98 (253)
T d1tw3a2          22 TRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAI   98 (253)
T ss_dssp             GGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHH
T ss_pred             HHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCCHHHHHH
Confidence            58999999986 44432       677889999999999999888888899999999  899999999999999999999


Q ss_pred             HHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCCCCCC-CcEEEeC
Q 046346          162 AKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAISP-ADAVVLK  209 (209)
Q Consensus       162 ~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~~~p~-~D~~~l~  209 (209)
                      ++++|+++++++|+|++++.+++      ..+||+++.+|+++++|. +|+|+++
T Consensus        99 a~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~  153 (253)
T d1tw3a2          99 ARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILS  153 (253)
T ss_dssp             HHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEE
T ss_pred             HHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeec
Confidence            99999999999999999987764      468999999999998876 9999874

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.53  E-value=3e-15  Score=102.57  Aligned_cols=77  Identities=42%  Similarity=0.742  Sum_probs=68.3

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH------------------HHhCCCC---CC
Q 046346            9 DTEPLEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK------------------LVSSGNN---ND   67 (209)
Q Consensus         9 ~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~------------------L~~~g~~---e~   67 (209)
                      ..|..++...|+++++||+.+++|++|+++||||+|..+|+|+|++|||+                  |++.|++   ++
T Consensus         3 ~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~   82 (101)
T d1fp2a1           3 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITK   82 (101)
T ss_dssp             STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEES
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecC
Confidence            35677889999999999999999999999999999987778999999999                  7888984   45


Q ss_pred             CCCceecCHhhhhhhcCC
Q 046346           68 EEQGYVLTNASKLLLKDN   85 (209)
Q Consensus        68 ~~~~y~~t~~s~~l~~~~   85 (209)
                      .+++|.+|+.|++|++++
T Consensus        83 ~~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          83 EEESYALTVASELLVRGS  100 (101)
T ss_dssp             SSEEEEECHHHHTTSTTS
T ss_pred             CCCeEecCHHHHHhhcCC
Confidence            678999999999998765

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.23  E-value=5e-12  Score=83.68  Aligned_cols=64  Identities=23%  Similarity=0.278  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCC-CCCCCceecCHhhhhhhc
Q 046346           20 WNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNN-NDEEQGYVLTNASKLLLK   83 (209)
Q Consensus        20 ~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~-e~~~~~y~~t~~s~~l~~   83 (209)
                      +....+++.+.+|++|+++||||+|..  +|+|++|||+               |++.|++ +.+++.|.+|+.|+.|.+
T Consensus         6 l~~l~~~~~~~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~~~~y~lt~~s~~L~~   83 (85)
T d1tw3a1           6 LIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLAD   83 (85)
T ss_dssp             HHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGST
T ss_pred             HHHHHchHHHHHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCcChhHHHHHHHHHHHCCCeEecCCCeEecCHHHHHhhc
Confidence            444578889999999999999999975  8999999999               6889984 567899999999999987


Q ss_pred             CC
Q 046346           84 DN   85 (209)
Q Consensus        84 ~~   85 (209)
                      |+
T Consensus        84 Dh   85 (85)
T d1tw3a1          84 DH   85 (85)
T ss_dssp             TS
T ss_pred             CC
Confidence            74

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.13  E-value=8.9e-11  Score=93.92  Aligned_cols=78  Identities=18%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             hhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-C
Q 046346          128 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A  199 (209)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~  199 (209)
                      .....+....+  +++..+|||||||+|.++..|++++ +.+++++|+ |.+++.|++      +.++++|+.+|+.+ +
T Consensus        54 ~~~~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~  130 (282)
T d2o57a1          54 WLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP  130 (282)
T ss_dssp             HHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred             HHHHHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence            33444555555  7788999999999999999999886 578999998 778877764      46899999999987 6


Q ss_pred             CCC--CcEEEe
Q 046346          200 ISP--ADAVVL  208 (209)
Q Consensus       200 ~p~--~D~~~l  208 (209)
                      +|.  +|+|+.
T Consensus       131 ~~~~sfD~V~~  141 (282)
T d2o57a1         131 CEDNSYDFIWS  141 (282)
T ss_dssp             SCTTCEEEEEE
T ss_pred             ccccccchhhc
Confidence            664  899874

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.09  E-value=5.6e-11  Score=79.54  Aligned_cols=68  Identities=19%  Similarity=0.183  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCCCCC---CCCceecC
Q 046346           14 EAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGNNND---EEQGYVLT   75 (209)
Q Consensus        14 ~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e~---~~~~y~~t   75 (209)
                      ...+.+++++.+++.+.+|++|+++||||+|..  ||+|++|||+               |+++|++++   +.+.|++|
T Consensus         6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~d~~~~~~~t   83 (92)
T d1qzza1           6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPT   83 (92)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEEC
T ss_pred             hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC--CCCCHHHHHHHHCcCchHHHHHHHHHHHCCCeeeecCCCceeccc
Confidence            567889999999999999999999999999986  8999999999               789998543   34478999


Q ss_pred             Hhhhhhhc
Q 046346           76 NASKLLLK   83 (209)
Q Consensus        76 ~~s~~l~~   83 (209)
                      +.|+.|++
T Consensus        84 ~~g~lL~d   91 (92)
T d1qzza1          84 RLGMLLAD   91 (92)
T ss_dssp             TTGGGGST
T ss_pred             HHHHhccC
Confidence            99998875

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=2.6e-10  Score=89.30  Aligned_cols=75  Identities=12%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP-  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~-  202 (209)
                      ..+.+.+.  +.+..+|||||||+|.++..++++++ .+++++|+ +.+++.|++      ..+||+|+.+|+.+..+. 
T Consensus        23 ~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~   99 (245)
T d1nkva_          23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE   99 (245)
T ss_dssp             HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence            44566666  77789999999999999999998886 79999999 788887764      467999999999875443 


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|+++.
T Consensus       100 ~fD~v~~  106 (245)
T d1nkva_         100 KCDVAAC  106 (245)
T ss_dssp             CEEEEEE
T ss_pred             ceeEEEE
Confidence             899874

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.00  E-value=1.7e-09  Score=83.47  Aligned_cols=68  Identities=18%  Similarity=0.266  Sum_probs=56.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCCCCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~--~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p~~D~~~l  208 (209)
                      ..+..+|||||||+|..+..|++.  +|+.+++++|+ +.+++.|++      ...++++..+|+.+ +.+.+|++++
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~  114 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVIL  114 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEE
Confidence            456789999999999999999987  58999999999 899999875      35688889999876 4445787764

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.97  E-value=5e-10  Score=76.76  Aligned_cols=73  Identities=26%  Similarity=0.289  Sum_probs=60.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCCCC---CCHHHHHH---------------------HHhCCCC---
Q 046346           13 LEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHGKP---MTLNELQK---------------------LVSSGNN---   65 (209)
Q Consensus        13 ~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g~~---~t~~eLA~---------------------L~~~g~~---   65 (209)
                      .++....++++++++.+.+|++|++|||||+|...|+|   +|++||+.                     |++.|+.   
T Consensus         4 ~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~   83 (110)
T d1fp1d1           4 DSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST   83 (110)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccccc
Confidence            45567789999999999999999999999999987544   79999987                     6788872   


Q ss_pred             --CCCCC----ceecCHhhhhhhcCC
Q 046346           66 --NDEEQ----GYVLTNASKLLLKDN   85 (209)
Q Consensus        66 --e~~~~----~y~~t~~s~~l~~~~   85 (209)
                        +..+|    .|.+||.|++|+++.
T Consensus        84 ~~~~~~g~~e~~Y~Ltpvsk~Lv~de  109 (110)
T d1fp1d1          84 TRTIEDGGAERVYGLSMVGKYLVPDE  109 (110)
T ss_dssp             EEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred             cccCCCCCeeeEEecchhhHhhcCCC
Confidence              12222    599999999999864

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.95  E-value=7e-10  Score=75.76  Aligned_cols=72  Identities=24%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhCC--CCCCHHHHHH-------------------HHhCCCC----C-
Q 046346           13 LEAQIHVWNHIFNFINSMTLKCSIQLGIPDIINKHG--KPMTLNELQK-------------------LVSSGNN----N-   66 (209)
Q Consensus        13 ~~~~~~l~~~~~g~~~~~~l~~a~~lglfd~L~~~g--~~~t~~eLA~-------------------L~~~g~~----e-   66 (209)
                      .++....++++++++.+.+|++|++|||||+|...|  .+.|+.|||.                   |++.|+.    + 
T Consensus         5 ee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~   84 (107)
T d1kyza1           5 EEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRT   84 (107)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeec
Confidence            344556779999999999999999999999999875  4779999988                   7888972    1 


Q ss_pred             CCCC----ceecCHhhhhhhcC
Q 046346           67 DEEQ----GYVLTNASKLLLKD   84 (209)
Q Consensus        67 ~~~~----~y~~t~~s~~l~~~   84 (209)
                      ..+|    +|.+||.|++|++|
T Consensus        85 ~~dg~~~~~Y~LTpvsk~Lv~d  106 (107)
T d1kyza1          85 QQDGKVQRLYGLATVAKYLVKN  106 (107)
T ss_dssp             CTTSCEEEEEEECHHHHHHSCC
T ss_pred             CCCCCeeeEEecchhHHhhcCC
Confidence            2222    69999999999876

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.2e-09  Score=87.03  Aligned_cols=66  Identities=29%  Similarity=0.417  Sum_probs=58.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC--CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP--ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~--~D~~~  207 (209)
                      ....+|||+|||+|.+++.++.++|+.+++..|+ +.+++.|++     ...||+++.+|+|++++.  +|+|+
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIv  180 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIV  180 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEE
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEE
Confidence            4567899999999999999999999999999999 788887775     236899999999998774  99986

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.94  E-value=1.1e-09  Score=84.44  Aligned_cols=74  Identities=23%  Similarity=0.371  Sum_probs=59.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP-  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~-  202 (209)
                      ..+++..+  +.+..+|||||||+|.++..++++.+  +++++|+ +.+++.|++     ..++++|+.+|+.+ ++|. 
T Consensus         5 ~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~   80 (231)
T d1vl5a_           5 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE   80 (231)
T ss_dssp             HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             HHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence            34556555  77789999999999999999999875  5788999 788887764     35789999999987 6664 


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|+|+.
T Consensus        81 ~fD~v~~   87 (231)
T d1vl5a_          81 RFHIVTC   87 (231)
T ss_dssp             CEEEEEE
T ss_pred             ccccccc
Confidence             899975

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.3e-09  Score=86.67  Aligned_cols=67  Identities=18%  Similarity=0.363  Sum_probs=59.0

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ....+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++...+++|+.+|..+ +++.  +|+++.
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~  153 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR  153 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEee
Confidence            4568999999999999999999999999999999 78899888767899999999977 6654  898863

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.91  E-value=1.7e-09  Score=83.90  Aligned_cols=74  Identities=22%  Similarity=0.377  Sum_probs=60.8

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP-  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p~-  202 (209)
                      .-+++..+  +.+..+|||||||+|.++..++++++  +++++|+ +.+++.|++     ..++++++.+|..+ ++|. 
T Consensus         6 ~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~   81 (234)
T d1xxla_           6 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   81 (234)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             HHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence            34567777  78889999999999999999999875  6889999 688888765     24789999999977 5664 


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|+|+.
T Consensus        82 ~fD~v~~   88 (234)
T d1xxla_          82 SFDIITC   88 (234)
T ss_dssp             CEEEEEE
T ss_pred             ccceeee
Confidence             899874

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.85  E-value=2.3e-09  Score=80.57  Aligned_cols=72  Identities=24%  Similarity=0.255  Sum_probs=57.6

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CCCC
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AISP  202 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~p~  202 (209)
                      ++..+.  ..+..+|||||||+|.++..+++.++  +++.+|+ |.+++.|++      ..+||+++.+|+.+   +.+.
T Consensus        25 il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~  100 (186)
T d1l3ia_          25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD  100 (186)
T ss_dssp             HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHhcC--CCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence            445555  56788999999999999999998765  6889999 788888775      45799999999876   3344


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|++++
T Consensus       101 ~D~v~~  106 (186)
T d1l3ia_         101 IDIAVV  106 (186)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence            898875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.84  E-value=4.8e-09  Score=81.67  Aligned_cols=66  Identities=21%  Similarity=0.348  Sum_probs=55.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      ..+..+|||||||+|.++..++++..  +++++|+ +.+++.|++    ...+++++.+|+.+ +++. +|+++.
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~  111 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTM  111 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhcccce--EEEEEeeccccccccccccccccccchheehhhhhcccccccchHhh
Confidence            45678999999999999999999754  6899999 789998885    34589999999977 6665 998874

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.84  E-value=5.4e-09  Score=78.89  Aligned_cols=72  Identities=15%  Similarity=0.350  Sum_probs=57.8

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEEccCCCCCCC--
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKAISP--  202 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-------~~~ri~~~~gD~~~~~p~--  202 (209)
                      +++.++  ..+..+|||||||+|.++..+++.+|+  ++++|+ +.+++.+++       ...+++++.+|++++++.  
T Consensus        44 Li~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~--v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~  119 (194)
T d1dusa_          44 LVENVV--VDKDDDILDLGCGYGVIGIALADEVKS--TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK  119 (194)
T ss_dssp             HHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSSE--EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred             HHHhCC--cCCCCeEEEEeecCChhHHHHHhhccc--cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence            455555  456789999999999999999999885  667888 777877764       245799999999987664  


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|++++
T Consensus       120 fD~Ii~  125 (194)
T d1dusa_         120 YNKIIT  125 (194)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            999986

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.83  E-value=2.7e-09  Score=83.22  Aligned_cols=74  Identities=19%  Similarity=0.319  Sum_probs=57.0

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-Cc
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-AD  204 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-~D  204 (209)
                      .+.+.+...-....+|||||||+|.++..++++++  +++++|+ +.+++.|++    ...+++++.+|+.+ +++. +|
T Consensus        26 ~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD  103 (246)
T d1y8ca_          26 FIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFD  103 (246)
T ss_dssp             HHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEE
T ss_pred             HHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhccccccc
Confidence            34444432224468999999999999999999975  6889999 788888875    35589999999977 4555 89


Q ss_pred             EEE
Q 046346          205 AVV  207 (209)
Q Consensus       205 ~~~  207 (209)
                      +|+
T Consensus       104 ~i~  106 (246)
T d1y8ca_         104 LIT  106 (246)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            886

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.78  E-value=5.3e-09  Score=83.52  Aligned_cols=77  Identities=16%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC-
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP-  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~-  202 (209)
                      +.+++.+. ....+.+|||||||+|.++..+++.+|. .+++++|+ +.+++.|++    ...+++|+.+|+.+ +++. 
T Consensus        16 ~~l~~~~~-~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~   94 (281)
T d2gh1a1          16 SFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDK   94 (281)
T ss_dssp             HHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSC
T ss_pred             HHHHHHHh-ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCC
Confidence            44444432 2567899999999999999999999985 78999999 788888875    34479999999987 5565 


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|+|+.
T Consensus        95 fD~v~~  100 (281)
T d2gh1a1          95 YDIAIC  100 (281)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            999875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.74  E-value=2.2e-08  Score=76.25  Aligned_cols=65  Identities=17%  Similarity=0.290  Sum_probs=53.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      +...+|||||||+|.++..+++.  ..+++++|+ +.+++.|++    ...++.++.+|+.+ +++.  +|+|+.
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~  108 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIF  108 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEE
Confidence            45679999999999999999986  567899999 788988774    35678999999987 6653  899875

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.69  E-value=1.8e-08  Score=77.58  Aligned_cols=66  Identities=17%  Similarity=0.327  Sum_probs=54.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEEccCCC-CCCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~~ri~~~~gD~~~-~~p~-~D~~~l  208 (209)
                      +....+|||||||+|.++..++++..  +++++|+ +.+++.|++ ..++++++.+|+.+ +.+. +|++++
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~   87 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVL   87 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEE
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccc
Confidence            34567899999999999999998865  5889999 788988876 46689999999876 3455 999975

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.68  E-value=1.8e-08  Score=79.29  Aligned_cols=75  Identities=16%  Similarity=0.246  Sum_probs=58.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCC-C-C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS-P-A  203 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p-~-~  203 (209)
                      ..+++.++  ..+..++||||||+|.++..|+.++++ +++++|. +.+++.|++   ...+++|..+|+.+ +.+ . +
T Consensus        83 ~~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence            34455555  456789999999999999999988766 7888998 788998885   24568999999876 443 3 8


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |+|++
T Consensus       160 D~I~~  164 (254)
T d1xtpa_         160 DLIVI  164 (254)
T ss_dssp             EEEEE
T ss_pred             ceEEe
Confidence            99975

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.68  E-value=2.8e-08  Score=77.98  Aligned_cols=90  Identities=22%  Similarity=0.322  Sum_probs=63.0

Q ss_pred             HHHHHHHhhhHhh----HHHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------
Q 046346          117 FFNEAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------  184 (209)
Q Consensus       117 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~------  184 (209)
                      .|...|...++..    +..++..++  ..+..+|||+|||+|.++..+++. .|+-+++.+|. ++.++.|++      
T Consensus        57 ~~~~~~~r~~qiiypkD~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~  134 (250)
T d1yb2a1          57 YFGRVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY  134 (250)
T ss_dssp             GHHHHC------------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS
T ss_pred             HHHhhCCCCCcccCHHHHHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc
Confidence            3555566544432    234455555  677899999999999999999987 68899999999 677887774      


Q ss_pred             CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          185 DLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       185 ~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      ...++++..+|+.+.++.  +|++++
T Consensus       135 ~~~nv~~~~~Di~~~~~~~~fD~V~l  160 (250)
T d1yb2a1         135 DIGNVRTSRSDIADFISDQMYDAVIA  160 (250)
T ss_dssp             CCTTEEEECSCTTTCCCSCCEEEEEE
T ss_pred             CCCceEEEEeeeecccccceeeeeee
Confidence            357899999999887664  899886

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=9.7e-09  Score=78.92  Aligned_cols=66  Identities=15%  Similarity=0.229  Sum_probs=53.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC-CCC-C-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-P-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~-~~p-~-~D~~~l  208 (209)
                      .+..+|||||||+|.++..++++++. +++++|+ +.+++.|++     ...+++|+.+|+.+ +++ . +|+|+.
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~  133 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI  133 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            45689999999999999999888774 7889999 888988875     23578999999977 443 3 899875

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.65  E-value=4.7e-08  Score=77.24  Aligned_cols=89  Identities=13%  Similarity=0.240  Sum_probs=70.5

Q ss_pred             HHHHHHhhhHh----hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc-------
Q 046346          118 FNEAMASDARL----ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES-------  184 (209)
Q Consensus       118 f~~~m~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-------  184 (209)
                      |...|...++.    -+..++..++  ..+..+|||+|||+|.++..|++. .|+-+++.+|+ ++.++.|++       
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~  146 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG  146 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT
T ss_pred             HHhhccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc
Confidence            44556654432    2445666676  778899999999999999999998 79999999999 788888774       


Q ss_pred             -CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          185 -DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       185 -~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                       ..++++++.+|+.+ ++|.  +|+++|
T Consensus       147 ~~~~nv~~~~~d~~~~~~~~~~fDaV~l  174 (264)
T d1i9ga_         147 QPPDNWRLVVSDLADSELPDGSVDRAVL  174 (264)
T ss_dssp             SCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             CCCceEEEEecccccccccCCCcceEEE
Confidence             25799999999987 5664  899876

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.64  E-value=6.3e-08  Score=72.92  Aligned_cols=72  Identities=22%  Similarity=0.247  Sum_probs=55.2

Q ss_pred             HHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC-CCC-Cc
Q 046346          133 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA-ISP-AD  204 (209)
Q Consensus       133 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~-~p~-~D  204 (209)
                      +++...  +....+|||||||+|..+..++++.+  +++++|+ +.+++.++.     ..+++++..+|+.+. .+. +|
T Consensus        22 ~~~~~~--~~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD   97 (198)
T d2i6ga1          22 VLAAAK--VVAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYD   97 (198)
T ss_dssp             HHHHHT--TSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEE
T ss_pred             HHHHcc--cCCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhccccchhhhheeccccccccccc
Confidence            444444  34457999999999999999999864  6888999 677887653     246799999999873 344 89


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      +|+.
T Consensus        98 ~I~~  101 (198)
T d2i6ga1          98 FILS  101 (198)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.64  E-value=4.5e-08  Score=74.96  Aligned_cols=76  Identities=16%  Similarity=0.338  Sum_probs=61.5

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC--
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--  201 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p--  201 (209)
                      ..+++.++  ..+..+|||||||+|..+..+++.. |+.+++.+|. +++++.|++     ...++.++.+|..+.+|  
T Consensus        65 a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~  142 (213)
T d1dl5a1          65 ALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF  142 (213)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             HHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence            34556666  7788999999999999999999876 6789999998 788887775     35789999999887544  


Q ss_pred             C-CcEEEe
Q 046346          202 P-ADAVVL  208 (209)
Q Consensus       202 ~-~D~~~l  208 (209)
                      . +|+|++
T Consensus       143 ~~fD~I~~  150 (213)
T d1dl5a1         143 SPYDVIFV  150 (213)
T ss_dssp             CCEEEEEE
T ss_pred             cchhhhhh
Confidence            2 899875

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.63  E-value=3.5e-08  Score=75.16  Aligned_cols=65  Identities=23%  Similarity=0.309  Sum_probs=51.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---CCCC--CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AISP--ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~~p~--~D~~~l  208 (209)
                      ...|||||||+|..+..+++.+|+..++++|+ +.++..|.+     ..++|.++.+|+..   -+|.  .|.+++
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccc
Confidence            46899999999999999999999999999998 666655442     35689999999865   2443  666553

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.61  E-value=8e-08  Score=73.10  Aligned_cols=66  Identities=23%  Similarity=0.258  Sum_probs=51.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC---CCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~---~~p~--~D~~~l  208 (209)
                      ....+||||||+|.++..+++.+|+..++++|+ +.++..|.+     ...+|.++.+|+.+   -+|.  .|.+++
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i  107 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL  107 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcc
Confidence            346899999999999999999999999999998 555655432     35789999999765   2453  666643

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.60  E-value=4.3e-08  Score=72.87  Aligned_cols=65  Identities=11%  Similarity=0.033  Sum_probs=52.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEEccCCCCCC-
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFKAIS-  201 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----------------~~~ri~~~~gD~~~~~p-  201 (209)
                      .++..+|||||||+|..+..|+++  +.+++++|+ +.+++.|++                 ....++|..+|+++..+ 
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            567889999999999999999998  678999999 788888774                 13557889999987322 


Q ss_pred             ---CCcEEE
Q 046346          202 ---PADAVV  207 (209)
Q Consensus       202 ---~~D~~~  207 (209)
                         .+|+++
T Consensus        96 ~~~~~D~i~  104 (201)
T d1pjza_          96 DIGHCAAFY  104 (201)
T ss_dssp             HHHSEEEEE
T ss_pred             cccceeEEE
Confidence               268775

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.57  E-value=5e-08  Score=73.82  Aligned_cols=63  Identities=22%  Similarity=0.334  Sum_probs=53.4

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCCCCCC-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISP-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~~~p~-~D~~~l  208 (209)
                      ..+|||+|||+|.++..++...+. +++++|. +.+++.|++...+++++.+|+.+ ++. +|+|++
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~  113 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIM  113 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEE
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEe
Confidence            589999999999999988887654 7899998 78888888777889999999864 555 999875

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=8.3e-08  Score=78.14  Aligned_cols=76  Identities=17%  Similarity=0.205  Sum_probs=60.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEEEEcc
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKYVGGD  195 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------------~~~ri~~~~gD  195 (209)
                      ..+++.+.  ..+..+|+|||||+|.++..+++.+|..+++++|+ +.+++.|++              ...+|+|+.+|
T Consensus       141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            44566665  67788999999999999999999999999999999 677766653              14679999999


Q ss_pred             CCC-CCC----CCcEEEe
Q 046346          196 MFK-AIS----PADAVVL  208 (209)
Q Consensus       196 ~~~-~~p----~~D~~~l  208 (209)
                      |.+ ++.    .+|++++
T Consensus       219 ~~~~~~~~~~~~advi~~  236 (328)
T d1nw3a_         219 FLSEEWRERIANTSVIFV  236 (328)
T ss_dssp             TTSHHHHHHHHHCSEEEE
T ss_pred             ccccccccccCcceEEEE
Confidence            987 332    2688764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.52  E-value=4.7e-08  Score=76.87  Aligned_cols=65  Identities=26%  Similarity=0.366  Sum_probs=51.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCC--CCcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p--~~D~~~l  208 (209)
                      .+..+|||||||+|.+++.+++..  .+++++|+ |.+++.|++    ..-++++..+|+.+..|  .+|+++.
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~a  190 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVA  190 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEE
T ss_pred             CccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhh
Confidence            456899999999999999888764  57899999 788888774    33467889999876554  3898863

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=8.9e-08  Score=73.70  Aligned_cols=65  Identities=17%  Similarity=0.209  Sum_probs=50.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      .++..+|||||||+|.++..++++  ..+++++|. +.+++.|++.. ...++.+|+.+ ++|.  +|+|+.
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~-~~~~~~~~~~~l~~~~~~fD~ii~  108 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG-VKNVVEAKAEDLPFPSGAFEAVLA  108 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT-CSCEEECCTTSCCSCTTCEEEEEE
T ss_pred             cCCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccc-ccccccccccccccccccccceee
Confidence            456789999999999999999876  568999999 78899888522 12356788866 5653  898863

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=1.5e-07  Score=71.09  Aligned_cols=58  Identities=14%  Similarity=0.100  Sum_probs=46.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      +..+|||||||+|.++..+.      +.+++|. |.+++.|++  .+++++.+|+.+ +++.  +|+|+.
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~--~~~~~~~~d~~~l~~~~~~fD~I~~   97 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK--RGVFVLKGTAENLPLKDESFDFALM   97 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH--TTCEEEECBTTBCCSCTTCEEEEEE
T ss_pred             CCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc--ccccccccccccccccccccccccc
Confidence            34689999999999988874      3578999 888888883  468999999976 5553  899975

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.47  E-value=2.8e-07  Score=71.83  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CC--CC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AI--SP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~--p~-~D~~~l  208 (209)
                      ++..+|||||||+|..+..+++..+. +++++|+ +.+++.|++      ...++.|..+|.+. +.  .+ +|+|+.
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~-~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~   99 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIG-EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS   99 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEE
Confidence            56689999999999999999887543 6889999 788888864      24579999999976 33  22 899864

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=3.3e-07  Score=73.11  Aligned_cols=74  Identities=16%  Similarity=0.240  Sum_probs=58.5

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~  202 (209)
                      ...+++.+.  ..+..+|||||||.|..+..++++++ .+++++++ +..++.|++      ..+++++..+|+. .+|.
T Consensus        51 ~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~-~~~~  126 (285)
T d1kpga_          51 IDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDE  126 (285)
T ss_dssp             HHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCC
T ss_pred             HHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh-cccc
Confidence            456677776  77889999999999999999999995 79999999 555555443      5689999999984 3454


Q ss_pred             -CcEEE
Q 046346          203 -ADAVV  207 (209)
Q Consensus       203 -~D~~~  207 (209)
                       +|.++
T Consensus       127 ~fD~i~  132 (285)
T d1kpga_         127 PVDRIV  132 (285)
T ss_dssp             CCSEEE
T ss_pred             ccccee
Confidence             78764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.2e-07  Score=70.66  Aligned_cols=78  Identities=17%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc----------CCCCeEEEEccCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFK  198 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~----------~~~ri~~~~gD~~~  198 (209)
                      ..+++.+.....+..+|||||||+|..+..+++. .|.-+++.+|+ +++++.|++          ...+++++.+|.++
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            4455655322566789999999999999999885 67889999998 788887764          24689999999887


Q ss_pred             CCCC---CcEEEe
Q 046346          199 AISP---ADAVVL  208 (209)
Q Consensus       199 ~~p~---~D~~~l  208 (209)
                      ..|.   +|+|++
T Consensus       144 ~~~~~~~fD~I~~  156 (224)
T d1i1na_         144 GYAEEAPYDAIHV  156 (224)
T ss_dssp             CCGGGCCEEEEEE
T ss_pred             ccchhhhhhhhhh
Confidence            5442   899875

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=6.3e-08  Score=74.78  Aligned_cols=65  Identities=17%  Similarity=0.144  Sum_probs=50.2

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC---CCCC--CcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK---AISP--ADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~---~~p~--~D~~~  207 (209)
                      ....+|||||||+|..+..++++.|. +++++|+ |.+++.|++    ...++.++.+|+..   ++|.  +|.++
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~  126 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL  126 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhccccccccccccccccccccccccccee
Confidence            34679999999999999999987664 7899999 788888775    34667788777543   4553  77775

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=4.3e-07  Score=72.23  Aligned_cols=75  Identities=16%  Similarity=0.187  Sum_probs=58.6

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~  202 (209)
                      ...+++.+.  +.+..+|||||||.|.++..++++++ .+++++|+ ++.++.|++      +..++.+...|+.+ +|.
T Consensus        41 ~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~~  116 (280)
T d2fk8a1          41 VDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAE  116 (280)
T ss_dssp             HHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCC
T ss_pred             HHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hcc
Confidence            455677776  77889999999999999999998886 59999999 566666653      45788888888753 454


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|.++.
T Consensus       117 ~fD~i~s  123 (280)
T d2fk8a1         117 PVDRIVS  123 (280)
T ss_dssp             CCSEEEE
T ss_pred             chhhhhH
Confidence             888863

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=3.1e-07  Score=72.51  Aligned_cols=89  Identities=16%  Similarity=0.201  Sum_probs=68.2

Q ss_pred             HHHHHHhhhHh----hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc------C
Q 046346          118 FNEAMASDARL----ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES------D  185 (209)
Q Consensus       118 f~~~m~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~------~  185 (209)
                      |...|...++.    -+..++..++  ..+..+|||+|||+|.++..+++.. |+.+++.+|. |++++.|++      .
T Consensus        76 ~~~~~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~  153 (266)
T d1o54a_          76 EIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL  153 (266)
T ss_dssp             HHHTCCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             HHhhccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc
Confidence            44455544332    2345666677  7788999999999999999999885 8899999999 788888875      3


Q ss_pred             CCCeEEEEccCCCCCCC--CcEEEe
Q 046346          186 LVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       186 ~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      .+++++..+|+...++.  +|.+++
T Consensus       154 ~~~v~~~~~d~~~~~~~~~~D~V~~  178 (266)
T d1o54a_         154 IERVTIKVRDISEGFDEKDVDALFL  178 (266)
T ss_dssp             GGGEEEECCCGGGCCSCCSEEEEEE
T ss_pred             ccCcEEEeccccccccccceeeeEe
Confidence            57899999998776554  788765

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.41  E-value=6.4e-07  Score=71.58  Aligned_cols=75  Identities=15%  Similarity=0.167  Sum_probs=58.1

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~  202 (209)
                      ...+++.+.  +.+..+|||||||.|..+..++++++ .+++++++ ++.++.+++      +.+++++...|+...-..
T Consensus        50 ~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  126 (291)
T d1kpia_          50 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP  126 (291)
T ss_dssp             HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence            456677777  78889999999999999999999997 59999999 455554442      568999999997433223


Q ss_pred             CcEEE
Q 046346          203 ADAVV  207 (209)
Q Consensus       203 ~D~~~  207 (209)
                      +|.|+
T Consensus       127 fD~i~  131 (291)
T d1kpia_         127 VDRIV  131 (291)
T ss_dssp             CSEEE
T ss_pred             cceEe
Confidence            89875

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.39  E-value=4.4e-07  Score=68.24  Aligned_cols=76  Identities=17%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCC------C
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK------A  199 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~------~  199 (209)
                      ..+++.+.  -.....+||++||+|.++..+++++|+.+++++|+ |++++.|++    ..+|++++.++|.+      .
T Consensus        13 ~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~   90 (192)
T d1m6ya2          13 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   90 (192)
T ss_dssp             HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence            44556555  45678999999999999999999999999999999 899988875    46799999999965      2


Q ss_pred             CC--CCcEEEe
Q 046346          200 IS--PADAVVL  208 (209)
Q Consensus       200 ~p--~~D~~~l  208 (209)
                      ++  .+|.|++
T Consensus        91 ~~~~~vdgIl~  101 (192)
T d1m6ya2          91 LGIEKVDGILM  101 (192)
T ss_dssp             TTCSCEEEEEE
T ss_pred             cCCCCcceeee
Confidence            22  3677764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.9e-07  Score=70.04  Aligned_cols=66  Identities=9%  Similarity=-0.068  Sum_probs=51.8

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------------------CCCCeEEEEccCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------------------DLVNLKYVGGDMF  197 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------------------~~~ri~~~~gD~~  197 (209)
                      .....+|||+|||+|..+..|+++  +.+++++|+ |.+|+.|++                      ...++++..+|++
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            346689999999999999999997  568999999 677876542                      2468999999998


Q ss_pred             C--CC-CC-CcEEEe
Q 046346          198 K--AI-SP-ADAVVL  208 (209)
Q Consensus       198 ~--~~-p~-~D~~~l  208 (209)
                      +  +. .. +|+++-
T Consensus       121 ~l~~~~~~~fd~i~~  135 (229)
T d2bzga1         121 DLPRTNIGKFDMIWD  135 (229)
T ss_dssp             GGGGSCCCCEEEEEE
T ss_pred             hccccccCceeEEEE
Confidence            7  22 23 788763

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.37  E-value=3.5e-07  Score=70.72  Aligned_cols=59  Identities=19%  Similarity=0.248  Sum_probs=51.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA  199 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~~  199 (209)
                      ..+..+|||||||+|..+..+++..|+.+++++|+ |.+++.+++   ..+++..+.+|...+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~  134 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP  134 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccC
Confidence            56789999999999999999999999999999999 788887764   356788888887763

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.37  E-value=6.9e-07  Score=68.72  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=58.5

Q ss_pred             HHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCCCCCC---Cc
Q 046346          132 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAISP---AD  204 (209)
Q Consensus       132 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~~~p~---~D  204 (209)
                      .+++.++  ..+..+|||||||+|..+..+++..  -+++.+|. +..++.|++   ...+++++.+|.+..+|.   ||
T Consensus        61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD  136 (224)
T d1vbfa_          61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (224)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHHhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence            4566666  7788999999999999999888875  46788887 777777765   357999999998876553   89


Q ss_pred             EEEe
Q 046346          205 AVVL  208 (209)
Q Consensus       205 ~~~l  208 (209)
                      +|++
T Consensus       137 ~Iiv  140 (224)
T d1vbfa_         137 RVVV  140 (224)
T ss_dssp             EEEE
T ss_pred             HHHh
Confidence            9875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=7.3e-07  Score=72.27  Aligned_cols=65  Identities=17%  Similarity=0.187  Sum_probs=51.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      +..+|||||||+|.++..++++.. -+++++|..+++..|++      ..++|+++.+|+.+ ++|.  +|+++.
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~s  111 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEE
Confidence            468999999999999998887654 37899999777666553      46899999999987 6664  898863

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.35  E-value=6.4e-07  Score=67.76  Aligned_cols=64  Identities=23%  Similarity=0.245  Sum_probs=50.8

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCCCCcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p~~D~~~l  208 (209)
                      ..+|||+|||+|.++.+++.+.+ .+++++|. +.+++.+++    ...+++++.+|..+.-..+|+|++
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~  115 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIM  115 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEE
T ss_pred             CCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEE
Confidence            47999999999999999887644 58999999 677777664    467889999998653333999875

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.35  E-value=5.3e-07  Score=68.65  Aligned_cols=58  Identities=16%  Similarity=0.128  Sum_probs=51.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK  198 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~  198 (209)
                      +.+..+|||||||+|..+..+++..|+.+++++|+ |.+++.+++   ..+++.++.+|...
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~  115 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASK  115 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccC
Confidence            66789999999999999999999999999999999 888887764   35789999999876

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.7e-06  Score=69.48  Aligned_cols=67  Identities=18%  Similarity=0.169  Sum_probs=51.4

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCC--CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISP--ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~--~D~~~l  208 (209)
                      ..+.++|||||||+|.++..++++.+ -+++++|..+....+.+      ..++|+++.+|..+ +.|.  +|+++.
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivs  108 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIIS  108 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEE
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEE
Confidence            34568999999999999999999866 37899999544333321      56899999999987 5553  899863

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=6.3e-07  Score=70.07  Aligned_cols=66  Identities=15%  Similarity=0.052  Sum_probs=53.5

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC----CC---C--CCcE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK----AI---S--PADA  205 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~----~~---p--~~D~  205 (209)
                      ....++||||||+|.++..|++++|++++++.|+ +.+++.|++      +.+|+.+...+..+    .+   +  .+|+
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            3457999999999999999999999999999999 788888875      57899988765433    21   2  2788


Q ss_pred             EE
Q 046346          206 VV  207 (209)
Q Consensus       206 ~~  207 (209)
                      ++
T Consensus       140 iv  141 (250)
T d2h00a1         140 CM  141 (250)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=7.1e-07  Score=70.53  Aligned_cols=65  Identities=15%  Similarity=0.306  Sum_probs=54.6

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCC----CCcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS----PADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p----~~D~~~  207 (209)
                      .+..+++|+|||+|.++..++ ++|+.+++..|. |.+++.|++      ...++.+..+|++++++    .+|+++
T Consensus       109 ~~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIV  184 (271)
T d1nv8a_         109 YGIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMIL  184 (271)
T ss_dssp             HTCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred             ccccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEE
Confidence            346789999999999999987 579999999999 788887774      46789999999998654    289986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=7.9e-07  Score=71.72  Aligned_cols=64  Identities=17%  Similarity=0.189  Sum_probs=50.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEEccCCC-CCCC--CcEEE
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISP--ADAVV  207 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~~~a~~------~~~ri~~~~gD~~~-~~p~--~D~~~  207 (209)
                      +.++|||||||+|.++..++++.+. +++++|..+....+++      ..++|+++.+|+.+ +.|.  +|+++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~iv  105 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIII  105 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEe
Confidence            4689999999999999998887554 7889998654444332      57899999999988 5553  89886

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.3e-06  Score=70.66  Aligned_cols=91  Identities=15%  Similarity=0.217  Sum_probs=67.5

Q ss_pred             HHHHHHHHhhhHh----hHHHHHHhccccccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc-----
Q 046346          116 NFFNEAMASDARL----ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES-----  184 (209)
Q Consensus       116 ~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-----  184 (209)
                      +.|...|...++.    -+..++..++  ..+..+|||+|||+|.++..|++. .|+-+++.+|+ ++.++.|++     
T Consensus        69 ~d~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~  146 (324)
T d2b25a1          69 EDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW  146 (324)
T ss_dssp             HHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHh
Confidence            3455666654432    2445667777  778899999999999999999987 69999999999 777777663     


Q ss_pred             -----------CCCCeEEEEccCCC---CCCC--CcEEEe
Q 046346          185 -----------DLVNLKYVGGDMFK---AISP--ADAVVL  208 (209)
Q Consensus       185 -----------~~~ri~~~~gD~~~---~~p~--~D~~~l  208 (209)
                                 ..+++++..+|+.+   .++.  +|.++|
T Consensus       147 ~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L  186 (324)
T d2b25a1         147 RDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL  186 (324)
T ss_dssp             HHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE
T ss_pred             hhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee
Confidence                       24789999999865   2343  798875

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.30  E-value=1.9e-07  Score=67.56  Aligned_cols=65  Identities=11%  Similarity=0.032  Sum_probs=53.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC--CC--CCCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AI--SPADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~--~~--p~~D~~~l  208 (209)
                      ...+|||+|||+|.++.+.+.+... +++.+|. +.+++.+++      ..++++++.+|.++  +.  ..+|++++
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEe
Confidence            4689999999999999999998775 8999999 777776664      35789999999876  22  23999986

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.25  E-value=1.2e-06  Score=66.87  Aligned_cols=75  Identities=20%  Similarity=0.368  Sum_probs=59.0

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCCC--
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAISP--  202 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p~--  202 (209)
                      ..+++.++  ..+..+|||||||+|..+..+++-.. .+++.+|. +++++.|++     ..+++.++.+|.++.+|.  
T Consensus        68 a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~  144 (215)
T d1jg1a_          68 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  144 (215)
T ss_dssp             HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhhc--cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence            44566666  77789999999999999998887643 55777887 777777764     358999999999886553  


Q ss_pred             -CcEEEe
Q 046346          203 -ADAVVL  208 (209)
Q Consensus       203 -~D~~~l  208 (209)
                       +|.|++
T Consensus       145 pfD~Iiv  151 (215)
T d1jg1a_         145 PYDVIIV  151 (215)
T ss_dssp             CEEEEEE
T ss_pred             cceeEEe
Confidence             899975

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=7.2e-07  Score=70.96  Aligned_cols=92  Identities=12%  Similarity=0.159  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhhh---HhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----
Q 046346          113 KLNNFFNEAMASDA---RLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----  184 (209)
Q Consensus       113 ~~~~~f~~~m~~~~---~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----  184 (209)
                      ...+.|...+....   .....++.+.+.  ..+..+|||||||+|.++..|+++  +.+++++|+ +.+++.|++    
T Consensus        25 ~~~~~~~~~~~~~~~r~~~~~~~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~  100 (292)
T d1xvaa_          25 EAARVWQLYIGDTRSRTAEYKAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWN  100 (292)
T ss_dssp             HHHHHHHHHHHTTCCBCHHHHHHHHHHHH--HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcchhhhHHHHHHHHHHHhh--hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHh
Confidence            33445555554322   122344555555  456789999999999999999998  578999999 788888764    


Q ss_pred             C-----CCCeEEEEccCCC---CCC---CCcEEEe
Q 046346          185 D-----LVNLKYVGGDMFK---AIS---PADAVVL  208 (209)
Q Consensus       185 ~-----~~ri~~~~gD~~~---~~p---~~D~~~l  208 (209)
                      .     ..+..+...|+..   ..|   .+|+++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~  135 (292)
T d1xvaa_         101 RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC  135 (292)
T ss_dssp             TTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred             cccccccceeeeeeccccccccccCCCCCceEEEE
Confidence            1     1244556667654   222   2787763

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=1.4e-06  Score=72.49  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEE-EEc
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKY-VGG  194 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--------------~~~ri~~-~~g  194 (209)
                      ..+++.++  +.+..++||||||+|..+..+++++|..+++++|+ +.+++.|+.              ....+.+ ..+
T Consensus       206 ~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         206 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            44556565  67778999999999999999999999989999999 777777763              1223444 456


Q ss_pred             cCCCC------CCCCcEEEe
Q 046346          195 DMFKA------ISPADAVVL  208 (209)
Q Consensus       195 D~~~~------~p~~D~~~l  208 (209)
                      +|++.      ++.+|++++
T Consensus       284 ~f~~~~~~d~~~~~adVV~i  303 (406)
T d1u2za_         284 SFVDNNRVAELIPQCDVILV  303 (406)
T ss_dssp             CSTTCHHHHHHGGGCSEEEE
T ss_pred             chhhccccccccccceEEEE
Confidence            77652      344777764

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.17  E-value=2.6e-06  Score=65.38  Aligned_cols=78  Identities=18%  Similarity=0.243  Sum_probs=58.3

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHH------CCCCeEEEeec-hHHHhhccc----------CCCCeEEEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA------FPKLECTCFDL-PHVVNGLES----------DLVNLKYVG  193 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~------~P~l~~~~~Dl-p~v~~~a~~----------~~~ri~~~~  193 (209)
                      ..++..+.....+..+|||||||+|..+..+++.      ++..+++.+|. ++.++.|++          ...++++..
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            3445555211567899999999999999888776      46678999998 677776653          146899999


Q ss_pred             ccCCCCCCC---CcEEEe
Q 046346          194 GDMFKAISP---ADAVVL  208 (209)
Q Consensus       194 gD~~~~~p~---~D~~~l  208 (209)
                      +|..+.+|.   ||.|++
T Consensus       148 ~d~~~~~~~~~~fD~Iiv  165 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHV  165 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEE
T ss_pred             cccccccccccceeeEEE
Confidence            999885542   899875

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.14  E-value=1.9e-06  Score=67.70  Aligned_cols=66  Identities=18%  Similarity=0.092  Sum_probs=54.3

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCCCC--CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~p~--~D~~~l  208 (209)
                      ....+|||+|||+|.+++.++++ +..+++.+|+ |..++.+++      ..++|+++.+|.++-.+.  +|.|+|
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~  180 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM  180 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred             CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEE
Confidence            46789999999999999999987 4568999999 777877664      568999999999873333  898876

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.89  E-value=5e-06  Score=66.90  Aligned_cols=68  Identities=19%  Similarity=0.203  Sum_probs=57.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------CCCCeEEEEccCCC---CCCC-CcE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFK---AISP-ADA  205 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----------~~~ri~~~~gD~~~---~~p~-~D~  205 (209)
                      .+.+++||.||+|.|..+.++++..|..+++++|+ |.|++.|++          ..+|++.+.+|.++   ..+. +|+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            35689999999999999999999888889999999 888988774          25799999999886   3344 999


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |++
T Consensus       155 Ii~  157 (312)
T d1uira_         155 VII  157 (312)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.86  E-value=6.7e-06  Score=60.34  Aligned_cols=66  Identities=14%  Similarity=0.124  Sum_probs=48.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC---CC--CCCcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AI--SPADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~---~~--p~~D~~~l  208 (209)
                      .....+|||+|||+|.++.+.+.+.  .+++.+|. +.+++.+++      ...++....+|.+.   ..  ..+|+|++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            3466899999999999999988884  57888999 778877664      35567666666543   12  23899876

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.84  E-value=3.4e-05  Score=59.41  Aligned_cols=69  Identities=12%  Similarity=0.311  Sum_probs=53.5

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~  202 (209)
                      +..+++..+  .....+||+||||+|.++..|+++..  +++++|+ +..++..++   ..++++++.+|+++ ++|.
T Consensus        10 ~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~   83 (235)
T d1qama_          10 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK   83 (235)
T ss_dssp             HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccc
Confidence            455666666  66789999999999999999999854  5777777 555555543   35799999999998 5654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.83  E-value=1.2e-05  Score=63.45  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=57.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAV  206 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~  206 (209)
                      .+.+++||-||||.|..+.++++..|..+++++|+ |.|++.|++         ..+|++.+.+|.++   ..+. +|+|
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            35689999999999999999998888889999999 899988875         25799999999776   2333 8998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       153 i~  154 (274)
T d1iy9a_         153 MV  154 (274)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=9e-06  Score=64.77  Aligned_cols=68  Identities=13%  Similarity=0.189  Sum_probs=57.3

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAV  206 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~  206 (209)
                      .+.+++||-||||.|..+.++++..|..+++++|+ |.|++.+++         ..+|++.+.+|.++   ..+. +|+|
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            35689999999999999999998888889999999 889998875         26899999999776   3344 8998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       167 i~  168 (295)
T d1inla_         167 II  168 (295)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=1.3e-05  Score=59.40  Aligned_cols=64  Identities=16%  Similarity=0.182  Sum_probs=51.1

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC--C-CCC-CcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A-ISP-ADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~--~-~p~-~D~~~l  208 (209)
                      ..+|||++||+|.++.+.+.+... +++.+|. +.+++.+++     ...+++++.+|.++  . ... +|+|++
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEE
Confidence            479999999999999999998775 7899998 677776654     35678999999776  2 222 899986

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1e-05  Score=64.13  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=57.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAV  206 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~  206 (209)
                      .+.+++||-||||.|..+.++++..|..+++++|+ |.|++.|++         ..+|++.+.+|.++   .-+. +|+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            35689999999999999999998888889999999 899998875         26899999999765   3344 8998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       156 i~  157 (285)
T d2o07a1         156 IT  157 (285)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.4e-05  Score=62.66  Aligned_cols=41  Identities=15%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             CCeEEEecCCccHHHHHHH----HHCCCC--eEEEeec-hHHHhhccc
Q 046346          144 LNSLVDVGGGTGTAAKAIA----KAFPKL--ECTCFDL-PHVVNGLES  184 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~----~~~P~l--~~~~~Dl-p~v~~~a~~  184 (209)
                      ..+|||||||+|.++..|+    .++|+.  +.+++|. +.+++.+++
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~   88 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKE   88 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHH
Confidence            3479999999999877654    457766  4588898 677877764

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.72  E-value=2.9e-05  Score=59.49  Aligned_cols=58  Identities=21%  Similarity=0.236  Sum_probs=47.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK  198 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~  198 (209)
                      ..+..+|||+|||+|..+..|++.. |+-+++.+|+ |.+++.+++   ....+..+.+|...
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~  133 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATK  133 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            5678999999999999999999985 8889999999 788877664   34567777887654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.69  E-value=2.2e-05  Score=63.32  Aligned_cols=66  Identities=26%  Similarity=0.253  Sum_probs=53.4

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C----CCCcEEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I----SPADAVV  207 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~----p~~D~~~  207 (209)
                      .+..+|||+|||+|.+++.+++.... +++.+|+ +.+++.+++      ..++++++.+|+++.   +    ..+|+|+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~-~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGAD-EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCc-EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            45789999999999999999988643 8999999 788887764      357899999998862   1    2389998


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       223 ~  223 (324)
T d2as0a2         223 L  223 (324)
T ss_dssp             E
T ss_pred             c
Confidence            6

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.68  E-value=2.2e-05  Score=62.34  Aligned_cols=68  Identities=19%  Similarity=0.286  Sum_probs=57.0

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCC--CCcE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS--PADA  205 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p--~~D~  205 (209)
                      .+++++||-||||.|..+.++++..|-.+++++|+ |.|++.+++         ..+|++.+.+|.++   ..+  .+|+
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            35789999999999999999999778778999999 899998875         36899999999665   333  3999


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |++
T Consensus       158 Ii~  160 (290)
T d1xj5a_         158 VIV  160 (290)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=2e-05  Score=59.78  Aligned_cols=68  Identities=15%  Similarity=0.159  Sum_probs=54.7

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCCC---------CCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI---------SPA  203 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~~---------p~~  203 (209)
                      ..++++||+||+|+|.-+..+++..| +.+++.+|. |...+.|++      ..++|+++.||..+-+         ..+
T Consensus        54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            34679999999999999999999976 579999999 677777764      5689999999986522         227


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |++++
T Consensus       134 D~ifi  138 (214)
T d2cl5a1         134 DMVFL  138 (214)
T ss_dssp             EEEEE
T ss_pred             ceeee
Confidence            88875

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.66  E-value=1.7e-05  Score=63.52  Aligned_cols=68  Identities=18%  Similarity=0.269  Sum_probs=56.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEEccCCC---CCCC-CcEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AISP-ADAV  206 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------~~~ri~~~~gD~~~---~~p~-~D~~  206 (209)
                      .+.+++||-||||.|..+.++++..|-.+++++|+ |.|++.+++         ..+|++.+.+|.++   .-+. +|+|
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            35689999999999999999998777779999999 899988875         25799999999876   2333 8998


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       184 I~  185 (312)
T d2b2ca1         184 IT  185 (312)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.63  E-value=1.4e-05  Score=61.94  Aligned_cols=69  Identities=16%  Similarity=0.315  Sum_probs=54.0

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC-CCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP  202 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~-~~p~  202 (209)
                      ...+++..+  .....+||+||||+|.++..|+++.+  +++++|+ +..++.+++   ..++++++.+|+.+ ++|.
T Consensus        18 i~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~   91 (245)
T d1yuba_          18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN   91 (245)
T ss_dssp             HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccc
Confidence            456677776  67789999999999999999999954  5777887 455555553   34689999999998 6664

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.58  E-value=3.4e-05  Score=60.76  Aligned_cols=67  Identities=16%  Similarity=0.240  Sum_probs=54.6

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------------CCCCeEEEEccCCC---CCC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------------DLVNLKYVGGDMFK---AIS  201 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---------------~~~ri~~~~gD~~~---~~p  201 (209)
                      .+++++||.||||.|..+.++++ +|..+++++|+ |.|++.|++               ..+|++++.+|.++   .-.
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            35789999999999999999986 67678999999 899988874               25799999999765   223


Q ss_pred             CCcEEEe
Q 046346          202 PADAVVL  208 (209)
Q Consensus       202 ~~D~~~l  208 (209)
                      .+|+|++
T Consensus       149 ~yDvIi~  155 (276)
T d1mjfa_         149 GFDVIIA  155 (276)
T ss_dssp             CEEEEEE
T ss_pred             CCCEEEE
Confidence            4899875

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4.7e-05  Score=57.94  Aligned_cols=68  Identities=16%  Similarity=0.111  Sum_probs=55.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC--------CC-CC
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA--------IS-PA  203 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~--------~p-~~  203 (209)
                      ..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++      ..++++++.||..+.        .+ .+
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            45689999999999999999999987 678999998 677777664      578999999997651        13 38


Q ss_pred             cEEEe
Q 046346          204 DAVVL  208 (209)
Q Consensus       204 D~~~l  208 (209)
                      |++++
T Consensus       137 D~ifi  141 (219)
T d2avda1         137 DVAVV  141 (219)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            98875

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.42  E-value=8.8e-05  Score=54.67  Aligned_cols=65  Identities=15%  Similarity=0.124  Sum_probs=51.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC------CC-CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA------IS-PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~------~p-~~D~~~l  208 (209)
                      ...+|||+.||+|.++.+.+.+... +++.+|. +.+++.+++      ..++++++.+|.++-      .. .+|+|++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence            4689999999999999999998754 7888998 666766653      356899999998751      12 3899986

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.34  E-value=0.00014  Score=58.02  Aligned_cols=66  Identities=21%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C-CCCeEEEEccCCCCC-------CCCcE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D-LVNLKYVGGDMFKAI-------SPADA  205 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~-~~ri~~~~gD~~~~~-------p~~D~  205 (209)
                      .....+|||+.||+|.++..+++.  ..+++.+|. +.+++.|++      . ..+++|+.+|.|+-+       ..+|+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            345789999999999999999886  458999999 677877774      2 347999999998621       23899


Q ss_pred             EEe
Q 046346          206 VVL  208 (209)
Q Consensus       206 ~~l  208 (209)
                      |+|
T Consensus       208 Iil  210 (309)
T d2igta1         208 ILT  210 (309)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00038  Score=54.61  Aligned_cols=72  Identities=22%  Similarity=0.381  Sum_probs=51.8

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEEccCCC-CCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS  201 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~-~~p  201 (209)
                      ...+++...  .....+||+||+|+|.++..|+++.+  ++++++. +..++..++      ..++++++.+|+++ ++|
T Consensus        10 ~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~   85 (278)
T d1zq9a1          10 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   85 (278)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence            455666665  56678999999999999999999976  5666776 344433332      24689999999998 566


Q ss_pred             CCcE
Q 046346          202 PADA  205 (209)
Q Consensus       202 ~~D~  205 (209)
                      ..+.
T Consensus        86 ~~~~   89 (278)
T d1zq9a1          86 FFDT   89 (278)
T ss_dssp             CCSE
T ss_pred             hhhh
Confidence            5433

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=4.5e-05  Score=58.59  Aligned_cols=42  Identities=21%  Similarity=0.140  Sum_probs=32.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      ....+|||||||+|.++..+++.+. .+++++|+ +.+++.|++
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEK   92 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHH
Confidence            3567999999999998877766543 36899999 788887764

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.18  E-value=0.00015  Score=58.15  Aligned_cols=64  Identities=23%  Similarity=0.208  Sum_probs=50.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCC---C---C-CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I---S-PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~---~---p-~~D~~~l  208 (209)
                      ...+|||++||+|.++.++++.  ..+++.+|. +.+++.|++     ..++++++.+|.++-   +   . .+|+|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            4689999999999999998865  447899999 788887774     236899999998761   1   2 3899986

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.08  E-value=0.0008  Score=50.07  Aligned_cols=72  Identities=8%  Similarity=0.016  Sum_probs=50.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeechH-HHhhcccCCCCeEEEEccCCCCCC-C-CcEE
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDLPH-VVNGLESDLVNLKYVGGDMFKAIS-P-ADAV  206 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l-~~~~~Dlp~-v~~~a~~~~~ri~~~~gD~~~~~p-~-~D~~  206 (209)
                      ..+++.+.  .....+|+|.|||+|.++..+.++++.. +..++|+.+ .+.    ...+.....+|++...+ . +|++
T Consensus         9 ~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----~~~~~~~~~~~~~~~~~~~~fd~i   82 (223)
T d2ih2a1           9 DFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----LPPWAEGILADFLLWEPGEAFDLI   82 (223)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----CCTTEEEEESCGGGCCCSSCEEEE
T ss_pred             HHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----hcccceeeeeehhcccccccccee
Confidence            44455554  4556899999999999999999887764 588999843 222    33456778888877433 2 7777


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      +.
T Consensus        83 i~   84 (223)
T d2ih2a1          83 LG   84 (223)
T ss_dssp             EE
T ss_pred             cc
Confidence            53

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.07  E-value=0.00017  Score=55.08  Aligned_cols=68  Identities=15%  Similarity=0.132  Sum_probs=55.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEEccCCCC---C------C-C
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------S-P  202 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~------~~~ri~~~~gD~~~~---~------p-~  202 (209)
                      ..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++      ..++|+++.||..+-   +      . .
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            45689999999999999999999998 578899998 666666664      467999999998752   1      2 3


Q ss_pred             CcEEEe
Q 046346          203 ADAVVL  208 (209)
Q Consensus       203 ~D~~~l  208 (209)
                      +|++++
T Consensus       137 fD~iFi  142 (227)
T d1susa1         137 YDFIFV  142 (227)
T ss_dssp             BSEEEE
T ss_pred             eeEEEe
Confidence            899986

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.0012  Score=48.44  Aligned_cols=64  Identities=19%  Similarity=0.143  Sum_probs=52.1

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEEccCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK  198 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-~~~ri~~~~gD~~~  198 (209)
                      ..+++.+.  ......+||..+|.|.++..+++++  .+++++|+ |++++.+++ ..+|++++.++|-+
T Consensus         8 ~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~   73 (182)
T d1wg8a2           8 QEALDLLA--VRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH   73 (182)
T ss_dssp             HHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhccccceeEeehHHHH
Confidence            44555554  4567899999999999999999974  57999999 888888775 56799999998865

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.95  E-value=0.0011  Score=52.69  Aligned_cols=66  Identities=14%  Similarity=0.156  Sum_probs=50.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHH-----CCCCeEEEeec-hHHHhhccc----CCCCeEEEEccCCCCCC--CCcEEEe
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKA-----FPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PADAVVL  208 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~-----~P~l~~~~~Dl-p~v~~~a~~----~~~ri~~~~gD~~~~~p--~~D~~~l  208 (209)
                      ...+|+|.+||+|.++.++.++     .++.+.+++|+ +.++..|+.    ......+..+|.+...+  .+|+|+.
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~  194 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS  194 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence            4578999999999999998765     35557889998 666666653    35677888899887544  3899874

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=96.94  E-value=0.00052  Score=54.83  Aligned_cols=66  Identities=17%  Similarity=0.073  Sum_probs=50.3

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C-CCCeEEEEccCCCC------CCC-CcEE
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D-LVNLKYVGGDMFKA------ISP-ADAV  206 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~------~-~~ri~~~~gD~~~~------~p~-~D~~  206 (209)
                      ....+|||+.||+|.+++.++... .-+++.+|+ +..++.+++      . ..+++++.+|.|+-      -.. +|+|
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            457899999999999999877643 346888999 667776663      2 46899999999862      223 8999


Q ss_pred             Ee
Q 046346          207 VL  208 (209)
Q Consensus       207 ~l  208 (209)
                      ++
T Consensus       222 i~  223 (317)
T d2b78a2         222 II  223 (317)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00038  Score=53.88  Aligned_cols=65  Identities=12%  Similarity=0.219  Sum_probs=49.2

Q ss_pred             HHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEEccCCC
Q 046346          130 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK  198 (209)
Q Consensus       130 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~---~~~ri~~~~gD~~~  198 (209)
                      +..+++...  ......||+||+|+|.++..|+++..  +.+++|+ +..++..++   ..++++++.+|+.+
T Consensus        10 ~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~   78 (252)
T d1qyra_          10 IDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence            455666665  56688999999999999999999865  4666777 455554443   34789999999986

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0017  Score=52.18  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCCCCC-------CCcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-------PADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~~~p-------~~D~~~  207 (209)
                      ..+..+|+|+-||+|.++..|+++.  -+++++|. ++.++.|+.     ...+++|+.+|..+.++       .+|+++
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi  287 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  287 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence            4567899999999999999999875  46888898 677777764     35789999999876322       268887


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       288 l  288 (358)
T d1uwva2         288 L  288 (358)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00019  Score=55.68  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=31.7

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcc
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE  183 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~  183 (209)
                      ....+|||||||+|.+....+.++.. ++++.|. +.+++.++
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~   94 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELG   94 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHH
Confidence            35689999999999887655555443 7999999 77787665

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.0029  Score=47.20  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=50.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeech----HHHhhcc-cC-CCCeEEEEccCCCCC--CCCcEEEeC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP----HVVNGLE-SD-LVNLKYVGGDMFKAI--SPADAVVLK  209 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp----~v~~~a~-~~-~~ri~~~~gD~~~~~--p~~D~~~l~  209 (209)
                      ...+++|||.|.|.=++-++-.+|+.+++++|--    ..++.+. ++ .++++++..+..+-.  +.+|+++-|
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sR  139 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECS
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhh
Confidence            4579999999999999999999999999999971    3333322 23 468999998887632  348988753

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=96.38  E-value=0.0026  Score=46.37  Aligned_cols=64  Identities=19%  Similarity=0.173  Sum_probs=46.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C---CCCeEEEEccCCC----C--CCCCcEEEe
Q 046346          144 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D---LVNLKYVGGDMFK----A--ISPADAVVL  208 (209)
Q Consensus       144 ~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~----~---~~ri~~~~gD~~~----~--~p~~D~~~l  208 (209)
                      ..+|||+-+|||.++.+.+.+... +++.+|. +.+++..++    +   .....+...|.++    .  .+.+|+|++
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            469999999999999999999755 7889998 555554443    2   3456777776443    1  223899986

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0054  Score=44.60  Aligned_cols=62  Identities=21%  Similarity=0.297  Sum_probs=45.6

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEEccCCC
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK  198 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~l~~~~~Dlp~v~~~a~~~~~ri~~~~gD~~~  198 (209)
                      -++.+.|. .+.+..+|||+||++|.++..+.++. +.-+++.+|+..+-     ..+.+.++.+|+.+
T Consensus        11 ~EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----~i~~~~~~~~d~~~   73 (180)
T d1ej0a_          11 DEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----PIVGVDFLQGDFRD   73 (180)
T ss_dssp             HHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----CCTTEEEEESCTTS
T ss_pred             HHHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----ccCCceEeeccccc
Confidence            34455554 35678899999999999999888765 45678999985432     24667888888875

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.016  Score=45.82  Aligned_cols=56  Identities=11%  Similarity=0.144  Sum_probs=42.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEEccCCC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK  198 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~--~~~ri~~~~gD~~~  198 (209)
                      ...+|||||.|.|.++..|+++.---+.++++. +...+.-++  ..+|++.+.+|++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            456899999999999999998853347888887 333333332  35789999999874

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.54  E-value=0.011  Score=45.20  Aligned_cols=43  Identities=14%  Similarity=0.084  Sum_probs=32.9

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL  175 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl  175 (209)
                      .++.+.+-  +....+|||+|||+|.++..++++.+..++.++++
T Consensus        56 ~~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          56 RWFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             HHHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            44455443  56667999999999999999998877767666665

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.32  E-value=0.02  Score=41.81  Aligned_cols=42  Identities=19%  Similarity=0.258  Sum_probs=29.5

Q ss_pred             cCCCeEEEecCCccH----HHHHHHHHC----CCCeEEEeec-hHHHhhcc
Q 046346          142 EGLNSLVDVGGGTGT----AAKAIAKAF----PKLECTCFDL-PHVVNGLE  183 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~----~~~~l~~~~----P~l~~~~~Dl-p~v~~~a~  183 (209)
                      .+.-+|+++|||+|.    +++.+.+..    ++.+.++.|+ +.+++.|+
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~   73 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKAR   73 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHH
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhh
Confidence            346799999999998    444455442    2456888898 67777665

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=94.83  E-value=0.051  Score=40.87  Aligned_cols=56  Identities=16%  Similarity=0.082  Sum_probs=41.0

Q ss_pred             CCCeEEEecCCccHHHHHHHH----HCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC
Q 046346          143 GLNSLVDVGGGTGTAAKAIAK----AFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK  198 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~----~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~  198 (209)
                      ++.+||+||.+.|.-+.-++.    ..++.+++.+|+ +..........+||+++.||..+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSD  140 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeeccccc
Confidence            478999999999976654432    347889999998 34433333357899999999765

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=93.63  E-value=0.023  Score=43.09  Aligned_cols=67  Identities=25%  Similarity=0.384  Sum_probs=45.9

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeech----HHHhhcc-c-CCCCeEEEEccCCC-----CCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP----HVVNGLE-S-DLVNLKYVGGDMFK-----AISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp----~v~~~a~-~-~~~ri~~~~gD~~~-----~~p~-~D~~~l  208 (209)
                      ....+++|||.|.|.=++-++=.+|+++++++|--    ..++.+. + .-.++..+.+..-+     +... +|+++-
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence            45689999999999999999999999999999961    2222222 2 23566666654422     2222 777763

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.43  E-value=0.019  Score=35.30  Aligned_cols=41  Identities=22%  Similarity=0.279  Sum_probs=32.7

Q ss_pred             cCchhHhhhCCCCCCHHHHHH---------------HHhCCCCC-CCCCceecCHhh
Q 046346           38 LGIPDIINKHGKPMTLNELQK---------------LVSSGNNN-DEEQGYVLTNAS   78 (209)
Q Consensus        38 lglfd~L~~~g~~~t~~eLA~---------------L~~~g~~e-~~~~~y~~t~~s   78 (209)
                      +.|.+.+..++.|+|+.|||+               |+..|+++ ..+++|.+++..
T Consensus         8 l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y~lG~~l   64 (75)
T d1mkma1           8 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKL   64 (75)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCCEeecHHH
Confidence            457788887767999999999               78899855 357889999854

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=93.21  E-value=0.07  Score=43.49  Aligned_cols=76  Identities=16%  Similarity=0.065  Sum_probs=50.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCC-------------CeEEEeec-hHHHhhccc-------CCCCe
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-------------LECTCFDL-PHVVNGLES-------DLVNL  189 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-------------l~~~~~Dl-p~v~~~a~~-------~~~ri  189 (209)
                      ..+++.++  -....+|+|-.||+|.++.++.++...             ....++|. +.....|+-       .....
T Consensus       152 ~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~  229 (425)
T d2okca1         152 QAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS  229 (425)
T ss_dssp             HHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred             Hhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence            34444443  234689999999999999998776432             34678887 455554442       13456


Q ss_pred             EEEEccCCCCCCC--CcEEEe
Q 046346          190 KYVGGDMFKAISP--ADAVVL  208 (209)
Q Consensus       190 ~~~~gD~~~~~p~--~D~~~l  208 (209)
                      ....+|+++..+.  +|+|+.
T Consensus       230 ~i~~~d~l~~~~~~~fD~Ii~  250 (425)
T d2okca1         230 PIVCEDSLEKEPSTLVDVILA  250 (425)
T ss_dssp             SEEECCTTTSCCSSCEEEEEE
T ss_pred             eeecCchhhhhcccccceEEe
Confidence            6788999885443  899874

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.69  E-value=0.17  Score=40.54  Aligned_cols=41  Identities=17%  Similarity=0.113  Sum_probs=35.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhcc
Q 046346          143 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE  183 (209)
Q Consensus       143 ~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~  183 (209)
                      +..+|||..||+|..++..++..+..+++..|+ |..++.++
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~   86 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK   86 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHH
Confidence            467999999999999999999888778999999 67776655

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=88.99  E-value=0.24  Score=37.40  Aligned_cols=76  Identities=17%  Similarity=0.113  Sum_probs=51.7

Q ss_pred             HHHHHhccccccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHH-h-------hccc-------CCCCeEEEEcc
Q 046346          131 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVV-N-------GLES-------DLVNLKYVGGD  195 (209)
Q Consensus       131 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dlp~v~-~-------~a~~-------~~~ri~~~~gD  195 (209)
                      +.+.+++.-......+|||.=+|-|..+..++...  .+++.++...++ .       .+..       ...|++++.+|
T Consensus        76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D  153 (250)
T d2oyra1          76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence            34566664112234599999999999999999985  679999984332 2       1211       13489999999


Q ss_pred             CCC---CCC-CCcEEEe
Q 046346          196 MFK---AIS-PADAVVL  208 (209)
Q Consensus       196 ~~~---~~p-~~D~~~l  208 (209)
                      ..+   .+. .+|+|+|
T Consensus       154 s~~~L~~~~~~~DvIYl  170 (250)
T d2oyra1         154 SLTALTDITPRPQVVYL  170 (250)
T ss_dssp             HHHHSTTCSSCCSEEEE
T ss_pred             HHHHHhccCCCCCEEEE
Confidence            654   333 3899986

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.72  E-value=0.7  Score=31.87  Aligned_cols=63  Identities=21%  Similarity=0.162  Sum_probs=40.1

Q ss_pred             CeEEEecCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEEccCCC-CCCCCcEEEe
Q 046346          145 NSLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISPADAVVL  208 (209)
Q Consensus       145 ~~vlDvGgG~--G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri~~~~gD~~~-~~p~~D~~~l  208 (209)
                      .+|+=||+|.  |.++..|.+.++..+++++|. ++.++.+.+.. -+....-+... ....+|++++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~dlIil   68 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-IIDEGTTSIAKVEDFSPDFVML   68 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-SCSEEESCGGGGGGTCCSEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-cchhhhhhhhhhhccccccccc
Confidence            3577899875  446667888888899999998 67777776432 22222222222 2234788776

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=87.58  E-value=0.9  Score=35.82  Aligned_cols=65  Identities=17%  Similarity=0.310  Sum_probs=40.4

Q ss_pred             CcHHHHHHHHHHHhhhHhhHHHHHHhccccccCCCeEEEecCCccHHHHHHHHHCC-------CCeEEEeechHHHhh
Q 046346          111 EPKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-------KLECTCFDLPHVVNG  181 (209)
Q Consensus       111 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-------~l~~~~~Dlp~v~~~  181 (209)
                      .|+....|....+.+   . ..+...+.  .++...||++|+|+|.++..+++...       .++...++..+.+..
T Consensus        53 sp~is~~Fg~~ia~~---~-~~~~~~~~--~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~  124 (365)
T d1zkda1          53 SPEISQMFGELLGLW---S-ASVWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQ  124 (365)
T ss_dssp             HHHHCHHHHHHHHHH---H-HHHHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHH
T ss_pred             CCchHHHHHHHHHHH---H-HHHHHHhC--CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHH
Confidence            355666666666421   1 11223333  34567899999999999998877542       345778887555543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=1.9  Score=32.76  Aligned_cols=68  Identities=12%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC--C-CC---CCcEEE
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A-IS---PADAVV  207 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~--~-~p---~~D~~~  207 (209)
                      .....+|||+.+|+|.-+..++.. .+..+++..|. +.-++..++     ...++.+...|+..  + .|   .+|.|+
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL  171 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  171 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence            345678999999999999998876 45678899998 344443332     24678889999865  2 12   378887


Q ss_pred             e
Q 046346          208 L  208 (209)
Q Consensus       208 l  208 (209)
                      +
T Consensus       172 ~  172 (293)
T d2b9ea1         172 L  172 (293)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.70  E-value=1.8  Score=32.83  Aligned_cols=68  Identities=13%  Similarity=0.180  Sum_probs=46.2

Q ss_pred             ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHH----hhcccCC-CCeEEEEccCCC---CCCC-CcEEEe
Q 046346          141 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVV----NGLESDL-VNLKYVGGDMFK---AISP-ADAVVL  208 (209)
Q Consensus       141 ~~~~~~vlDvGgG~G~~~~~l~~~~P~l~~~~~Dl-p~v~----~~a~~~~-~ri~~~~gD~~~---~~p~-~D~~~l  208 (209)
                      -....+|||+..++|.=+..+++..++.+++..|. +.-+    +..+... ..+.....|...   ..+. +|.|++
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~  177 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL  177 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEE
Confidence            34568999999999999999999999888999997 2222    2222232 334444455543   1233 898875

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.34  E-value=0.46  Score=27.78  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             HHHHHcCchhHhhhCCCCCCHHHHHH---------------HHhCCC-CCCCCCceecCH
Q 046346           33 KCSIQLGIPDIINKHGKPMTLNELQK---------------LVSSGN-NNDEEQGYVLTN   76 (209)
Q Consensus        33 ~~a~~lglfd~L~~~g~~~t~~eLA~---------------L~~~g~-~e~~~~~y~~t~   76 (209)
                      +.--...|.+.|....+++|+++||+               |...|+ ++...+.|.+.+
T Consensus         5 k~eR~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G~~I~~~~gGY~L~~   64 (65)
T d1j5ya1           5 RQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAG   64 (65)
T ss_dssp             HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEECCT
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEEeCCCEEeCC
Confidence            33445567788866446899999999               566776 554556787753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.11  E-value=1.7  Score=30.92  Aligned_cols=44  Identities=23%  Similarity=0.209  Sum_probs=36.6

Q ss_pred             ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 046346          141 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES  184 (209)
Q Consensus       141 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~  184 (209)
                      .....+|+.+|+|. |.++..+++.....++++.|. ++-++.|++
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence            56678999999998 778889999988889999998 666776664

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.45  E-value=1.6  Score=33.66  Aligned_cols=67  Identities=12%  Similarity=0.186  Sum_probs=47.1

Q ss_pred             cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEEccCCC--CCCC-CcEEEe
Q 046346          142 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--AISP-ADAVVL  208 (209)
Q Consensus       142 ~~~~~vlDvGgG~G~~~~~l~~~~P-~l~~~~~Dl-p~v~~~a~~-----~~~ri~~~~gD~~~--~~p~-~D~~~l  208 (209)
                      ....+|+|+.+|+|.=+..++.... +...+..|. +.-+...++     ...++.....|...  ..+. +|.|++
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILv  191 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  191 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEE
Confidence            4567999999999999999998866 457888888 333333221     24667777777765  2333 898875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=80.44  E-value=6.4  Score=26.52  Aligned_cols=48  Identities=17%  Similarity=0.216  Sum_probs=35.1

Q ss_pred             ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCe
Q 046346          141 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNL  189 (209)
Q Consensus       141 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~l~~~~~Dl-p~v~~~a~~~~~ri  189 (209)
                      .....+|+-+|+| .|.++..+++.+. .++++.|. ++-.+.+++.....
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~~   73 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADV   73 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCcE
Confidence            4556788889977 6888888888765 69999998 56677777544333