Citrus Sinensis ID: 046349

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHWKEAREE
Secondary Structure (PSIPRED)
ccccccccccccccEEEccccccccccHHHcccccccEEcccccccccccccccccccEEEccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHEEEccccccccccHHHHHHHHHHHcccHHHHHHHcccccccccEEEEccccccHHEcccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
melpeslgqlstlEELFLVknnfvripeSIMQLSKLKFLNLSYSERLQSLLKLPcslleldahhctvlDTLSGLIFSSYeidlscnfkldrneARGIVEDALQEIQLMATAHWKEAREE
Flexible Loop (DISEMBL)
melpeslgqlsTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHWKEAREE
Low Complexity Region (SEG)
MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERlqsllklpcsllelDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHWKEAREE
Disordered region (IsUnstruct)
***********TLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHW******
Disordered Region (DISOPRED)
MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEA*GIVEDALQEI**************
Disordered Region (DISEMBL)
MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHWKEAREE
Disordered Region (DISPRO)
*ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHW******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHWKEAREE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.512	0.053	0.476	5e-06

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 3   LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLEL-- 60
           LPE +G LS+L++L L +NNF  +P SI QL  L+ L+L   +RL  L +LP  L EL  
Sbjct: 850 LPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHV 909

Query: 61  DAH 63
           D H
Sbjct: 910 DCH 912

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
255544956	1403	leucine-rich repeat containing protein,	0.932	0.079	0.393	9e-13
451798988	1219	TMV resistance protein N-like protein 6	0.907	0.088	0.426	1e-12
359493487	1162	PREDICTED: TMV resistance protein N-like	0.907	0.092	0.426	1e-12
359493483	1274	PREDICTED: TMV resistance protein N-like	0.907	0.084	0.382	5e-12
451798990	1335	TMV resistance protein N-like protein 7	0.907	0.080	0.382	5e-12
224171160	307	predicted protein [Populus trichocarpa]	0.588	0.228	0.542	2e-11
147770134	1414	hypothetical protein VITISV_040107 [Viti	0.907	0.076	0.4	5e-10
359486075	1291	PREDICTED: TMV resistance protein N-like	0.907	0.083	0.4	5e-10
147787212	600	hypothetical protein VITISV_032562 [Viti	0.554	0.11	0.492	4e-09
224131066	1176	tir-nbs-lrr resistance protein [Populus	0.924	0.093	0.381	5e-09

>gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 11/122 (9%)

Query: 1    MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLEL 60
            +++P SLG LS+L+ L L  NNF+RIP +I QLS L+ L++SY +RL++L +LP  +  L
Sbjct: 1024 VKVPGSLGYLSSLQVLLLKGNNFMRIPATIRQLSWLEVLDISYCKRLKALPELPQRIRVL 1083

Query: 61   DAHHCTVLDTLSGLIF-----------SSYEIDLSCNFKLDRNEARGIVEDALQEIQLMA 109
             AH+CT L T+S  +              Y    +    L++N    IVE AL + Q +A
Sbjct: 1084 VAHNCTSLKTVSSPLIQFQESQEQSPDDKYGFTFANCVSLEKNARSNIVESALLKTQHLA 1143

Query: 110  TA 111
            TA
Sbjct: 1144 TA 1145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 7/115 (6%)

Query: 3    LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDA 62
            LP  LG + +LE L L +N+F+ IP S+  LS+L+ L L Y + LQSL +LP S+  L+A
Sbjct: 963  LPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNA 1022

Query: 63   HHCTVLDTL---SGLIFSSYEIDLSCN----FKLDRNEARGIVEDALQEIQLMAT 110
            H CT L+T    SG   S    DL  N    F+L  N+   IV   L+ IQLM++
Sbjct: 1023 HSCTSLETFSCSSGAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSS 1077

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 7/115 (6%)

Query: 3    LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDA 62
            LP  LG + +LE L L +N+F+ IP S+  LS+L+ L L Y + LQSL +LP S+  L+A
Sbjct: 906  LPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNA 965

Query: 63   HHCTVLDTL---SGLIFSSYEIDLSCN----FKLDRNEARGIVEDALQEIQLMAT 110
            H CT L+T    SG   S    DL  N    F+L  N+   IV   L+ IQLM++
Sbjct: 966  HSCTSLETFSCSSGAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSS 1020

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 7/115 (6%)

Query: 3    LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDA 62
            LP  LG + +LE L L +N+F+ IP S+  LS+L+ L L Y + LQSL +LP S+  L+A
Sbjct: 900  LPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNA 959

Query: 63   HHCTVLDTL-------SGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMAT 110
            H CT L+T        +   F     + +  F+L  N+   IV   L+ IQLM++
Sbjct: 960  HSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSS 1014

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 7/115 (6%)

Query: 3    LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDA 62
            LP  LG + +LE L L +N+F+ IP S+  LS+L+ L L Y + LQSL +LP S+  L+A
Sbjct: 971  LPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNA 1030

Query: 63   HHCTVLDTL-------SGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMAT 110
            H CT L+T        +   F     + +  F+L  N+   IV   L+ IQLM++
Sbjct: 1031 HSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSS 1085

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224171160|ref|XP_002339466.1| predicted protein [Populus trichocarpa] gi|222875162|gb|EEF12293.1| predicted protein [Populus trichocarpa]

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 50/70 (71%)

Query: 1   MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLEL 60
           +E+P+SLG L++LE L L  NNFVR+P +I +L +L++L L Y  RL SL KLP  L +L
Sbjct: 238 LEVPKSLGCLTSLEALDLSGNNFVRLPTNISELYELQYLGLRYCRRLGSLQKLPPRLAKL 297

Query: 61  DAHHCTVLDT 70
           DAH CT L T
Sbjct: 298 DAHSCTSLRT 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770134|emb|CAN76615.1| hypothetical protein VITISV_040107 [Vitis vinifera]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 7/115 (6%)

Query: 3    LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDA 62
            LP  L  LS LE L L +NNF+ +P S+ +L  L+ L + + + LQSL +LP S+ EL A
Sbjct: 938  LPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRRLIVEHCKNLQSLPELPSSIKELLA 997

Query: 63   HHCTVLDTLSG-------LIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMAT 110
            + CT L+T S          F  +  + S  F+L  NE    VE  LQEI+L+A+
Sbjct: 998  NDCTSLETFSYPSSAYPLRKFGDFNFEFSNCFRLVGNEQSDTVEAILQEIRLVAS 1052

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 7/115 (6%)

Query: 3    LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDA 62
            LP  L  LS LE L L +NNF+ +P S+ +L  L+ L + + + LQSL +LP S+ EL A
Sbjct: 965  LPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRRLIVEHCKNLQSLPELPSSIKELLA 1024

Query: 63   HHCTVLDTLSG-------LIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMAT 110
            + CT L+T S          F  +  + S  F+L  NE    VE  LQEI+L+A+
Sbjct: 1025 NDCTSLETFSYPSSAYPLRKFGDFNFEFSNCFRLVGNEQSDTVEAILQEIRLVAS 1079

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787212|emb|CAN75767.1| hypothetical protein VITISV_032562 [Vitis vinifera]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%)

Query: 3   LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDA 62
           +P     L +LE L L +NNFV +P S+ QLS+LK L L Y +RLQSL +LP S+ E+DA
Sbjct: 507 IPNDFSSLCSLEYLDLSRNNFVTLPASLNQLSQLKGLRLGYCKRLQSLPELPSSIEEIDA 566

Query: 63  HHCTVLDTL 71
             CTV + +
Sbjct: 567 PDCTVTENI 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131066|ref|XP_002328445.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838160|gb|EEE76525.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 8/118 (6%)

Query: 2    ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELD 61
            E+P S+G L +L +L L  N+F RIP +I QL  L  L+L   ERLQ L +LP SL  L 
Sbjct: 908  EIPGSIGSLVSLRDLRLSCNDFERIPANIKQLPMLIKLDLHGCERLQHLPELPSSLQVLM 967

Query: 62   AHHCTVLDTLSGLIF--------SSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATA 111
            A +C  L +L+ +          +S + + S   KLD+N    I+ED    I+ MA++
Sbjct: 968  ASYCISLRSLASIFIQGGKEYAAASQQFNFSNCLKLDQNACNRIMEDVHLRIRRMASS 1025

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.941	0.091	0.322	6.3e-07
TAIR|locus:2081790	1253	AT3G51560 [Arabidopsis thalian	0.957	0.090	0.299	0.00018
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.747	0.068	0.361	0.00019
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.840	0.081	0.321	0.00023
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.361	0.053	0.431	0.00028
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.369	0.038	0.477	0.00072
MGI|MGI:1920564	347	Lrrc69 "leucine rich repeat co	0.336	0.115	0.425	0.00088
UNIPROTKB|F1PUU4	1273	FLII "Uncharacterized protein"	0.336	0.031	0.425	0.00097
UNIPROTKB|J9P2Y3	1278	FLII "Uncharacterized protein"	0.336	0.031	0.425	0.00098

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 39/121 (32%), Positives = 60/121 (49%)

Query:     2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERXXXXXXXXXXXXXXD 61
             +LP+++G LS+L+ L L  NN   +PES  QL+ LK+ +L + +               D
Sbjct:   869 KLPDNIGGLSSLQSLCLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLD 928

Query:    62 AHHCTVLDTLS--------GLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHW 113
             AH C  L+TL+        G    S  I  +C +KL+++    +V  A  + QLMA A  
Sbjct:   929 AHECESLETLANPLTPLTVGERIHSMFIFSNC-YKLNQDAQASLVGHARIKSQLMANASA 987

Query:   114 K 114
             K
Sbjct:   988 K 988

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2081790 AT3G51560 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00018, P = 0.00018
 Identities = 35/117 (29%), Positives = 51/117 (43%)

Query:     1 MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERXXXXXXXXXXXXXX 60
             M +PE +  L ++  L L +N F +IPESI QLSKL  L L +                 
Sbjct:   933 MHIPEEICSLPSVVLLDLGRNGFSKIPESIKQLSKLHSLRLRHCRNLILLPALPQSLKLL 992

Query:    61 DAHHCTVLDTLS-GLI-FSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHWKE 115
             + H C  L+++S G   F S+     C F      AR  V   L ++  +   H +E
Sbjct:   993 NVHGCVSLESVSWGFEQFPSHYTFSDC-FNKSPKVARKRVVKGLAKVASIGNEHQQE 1048

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00019, P = 0.00019
 Identities = 34/94 (36%), Positives = 48/94 (51%)

Query:     2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERXXXXXXXX-XXXXXX 60
             E+P S+G L  L EL L  NNF  IP SI +L++L  LNL+  +R               
Sbjct:   969 EIPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRLNLNNCQRLQALPDELPRGLLYI 1028

Query:    61 DAHHCTVLDTLSGLIFSSY---EIDLSCNFKLDR 91
               H CT L ++SG  F+ Y   ++  S  +KLD+
Sbjct:  1029 YIHSCTSLVSISGC-FNQYCLRKLVASNCYKLDQ 1061

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 0.00023, P = 0.00023
 Identities = 36/112 (32%), Positives = 58/112 (51%)

Query:    10 LSTLEELFLVKNNFVR-IPESIMQLSKLKFLNLSYSERXXXXXXXXXXXXXXDAHHCTVL 68
             +S+L+ L L KN+ +  +P++I QLS+LK+L+L Y +               DAH C  L
Sbjct:   809 ISSLQCLCLSKNDHISSLPDNISQLSQLKWLDLKYCKSLTSIPKLPPNLQHLDAHGCCSL 868

Query:    69 DTLSG---------LIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATA 111
              T+S           I+S++ I  +CN KL+R+    I   A ++ QL+  A
Sbjct:   869 KTVSNPLACLTTAQQIYSTF-ILTNCN-KLERSAKEEISSFAQRKCQLLLDA 918

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00028, Sum P(2) = 0.00028
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query:     3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSE 45
             LP   G L+ LE L+L  N F+ ++P S   LS+L  L+LS++E
Sbjct:   114 LPSGFGNLNRLEVLYLSSNGFLGQVPSSFSNLSQLNILDLSHNE 157

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 99 (39.9 bits), Expect = 0.00072, P = 0.00072
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query:     3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSER 46
             LPE +G LS+L++L L +NNF  +P SI QL  L+ L+L   +R
Sbjct:   850 LPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQR 893

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1920564 Lrrc69 "leucine rich repeat containing 69" [Mus musculus (taxid:10090)]

 Score = 92 (37.4 bits), Expect = 0.00088, P = 0.00087
 Identities = 17/40 (42%), Positives = 27/40 (67%)

Query:     3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLS 42
             +PE +  L  L++LFLV+NN   +PE I  L KL+ L+++
Sbjct:   168 IPEEIKFLKNLQQLFLVRNNIEELPEEICHLEKLRVLDIA 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PUU4 FLII "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 83 (34.3 bits), Expect = 0.00097, Sum P(2) = 0.00097
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query:     3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLS 42
             LP  +G+L++LEE     NN   IPES+ + +KL+ L L+
Sbjct:   309 LPSGIGKLASLEEFMAANNNLELIPESLCRCTKLRKLVLN 348

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|J9P2Y3 FLII "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 83 (34.3 bits), Expect = 0.00098, Sum P(2) = 0.00098
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query:     3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLS 42
             LP  +G+L++LEE     NN   IPES+ + +KL+ L L+
Sbjct:   314 LPSGIGKLASLEEFMAANNNLELIPESLCRCTKLRKLVLN 353

GO:0003779 "actin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_scaffold_20023000001	hypothetical protein (307 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.01780044	hypothetical protein (331 aa)			•						0.494
	fgenesh4_pg.C_scaffold_2767000001	hypothetical protein (201 aa)			•						0.484
	eugene3.00190957	annotation not avaliable (274 aa)			•						0.477
	eugene3.29890001	hypothetical protein (424 aa)			•						0.474
	eugene3.02170026	hypothetical protein (204 aa)			•						0.468
	gw1.19161.1.1	hypothetical protein (165 aa)			•						0.467
	eugene3.00031219	hypothetical protein (230 aa)			•						0.466
	eugene3.00150435	hypothetical protein (198 aa)			•						0.463
	fgenesh4_pg.C_scaffold_10476000001	hypothetical protein (434 aa)			•						0.455
	eugene3.00181060	hypothetical protein (243 aa)			•						0.453

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLS 42
            +P SLG L  L+ LFL +N     IP SI  L KL  L+LS
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNL 41
            +P SLG +++LE L L  N+F   IPES+ QL+ L+ LNL
Sbjct: 457 NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PLN03150	623	hypothetical protein; Provisional	99.09
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.06
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.04
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.8
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.79
PLN03150	623	hypothetical protein; Provisional	98.76
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.48
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.47
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.42
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.37
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.23
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.2
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.18
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.11
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.09
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.07
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.03
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.02
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.75
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.74
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.73
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.73
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.64
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.57
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.53
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.44
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.4
PRK15386	426	type III secretion protein GogB; Provisional	97.22
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.14
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	97.01
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.82
smart00370	26	LRR Leucine-rich repeats, outliers.	96.71
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.7
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.66
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.33
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.97
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	94.76
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.26
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	92.94
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	92.9
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.64
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	91.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.47
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	89.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	85.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	82.2
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.37

>PLN03150 hypothetical protein; Provisional

Probab=99.09  E-value=1.9e-10  Score=88.48  Aligned_cols=76  Identities=22%  Similarity=0.300  Sum_probs=69.8

Q ss_pred             CcChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFS   77 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~   77 (119)
                      .+|.+++.+++|+.|++++|.+. .+|..++.+++|+.|++++|++.+.+|+.   +.+|+.|++++|.+.+.+|..++.
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            47888999999999999999998 89999999999999999999999999986   578999999999999999988764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.06  E-value=5.2e-11  Score=95.03  Aligned_cols=75  Identities=25%  Similarity=0.303  Sum_probs=47.8

Q ss_pred             cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccC
Q 046349            3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFS   77 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~   77 (119)
                      +|..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|..   +.+|+.|++++|...+.+|..++.
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            5666667777777777777665 66666677777777777776666666653   345666666666555556655543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.04  E-value=5.8e-11  Score=77.94  Aligned_cols=74  Identities=31%  Similarity=0.419  Sum_probs=54.6

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCC---CCCceeeccCCCCcc-ccCcccc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLP---CSLLELDAHHCTVLD-TLSGLIF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~---~~L~~L~l~~~~~~~-~lp~~~~   76 (119)
                      .+|+.|..+.+|+.|++++|+++.+|.+++.+++|+.|+++-|+ +..+|..+   +-|+.||+.+|+..+ .+|..|+
T Consensus        47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff  124 (264)
T KOG0617|consen   47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF  124 (264)
T ss_pred             ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchh
Confidence            47888888888888888888888888888888888888888887 66677653   446777777665432 3444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.02  E-value=3e-10  Score=90.77  Aligned_cols=79  Identities=27%  Similarity=0.341  Sum_probs=57.2

Q ss_pred             CcChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFS   77 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~   77 (119)
                      .+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..   +++|+.|++++|...+.+|..++.
T Consensus       179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  258 (968)
T PLN00113        179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN  258 (968)
T ss_pred             cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence            35777778888888888888777 67777788888888888887776677764   456777777777666677766664


Q ss_pred             cCc
Q 046349           78 SYE   80 (119)
Q Consensus        78 l~~   80 (119)
                      +..
T Consensus       259 l~~  261 (968)
T PLN00113        259 LKN  261 (968)
T ss_pred             CCC
Confidence            433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=1.6e-09  Score=59.29  Aligned_cols=55  Identities=31%  Similarity=0.329  Sum_probs=46.5

Q ss_pred             CCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCC
Q 046349           11 STLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCT   66 (119)
Q Consensus        11 ~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~   66 (119)
                      ++|++|++++|.++.+|+ .|.++++|++|++++|++ ..+|. .   +++|+.|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCc
Confidence            478999999999998885 789999999999999994 55555 3   5789999999875

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.86  E-value=7.5e-10  Score=80.53  Aligned_cols=90  Identities=22%  Similarity=0.256  Sum_probs=66.1

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhh-cCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCce
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIM-QLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEI   81 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~-~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l   81 (119)
                      +|+++..|+.|+++.|.++.+|.+.. ++.++..||+.+|+ +..+|+.   +.+|++||+++ +.+..+|.+++++ ++
T Consensus       223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL  299 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HL  299 (565)
T ss_pred             CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccC-CccccCCcccccc-ee
Confidence            45555555555555555555565544 78899999999999 8899987   47899999997 6788899999977 55


Q ss_pred             eecCccCCCcccccchHHHH
Q 046349           82 DLSCNFKLDRNEARGIVEDA  101 (119)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~  101 (119)
                      .+.   .+.+|....+....
T Consensus       300 ~~L---~leGNPlrTiRr~i  316 (565)
T KOG0472|consen  300 KFL---ALEGNPLRTIRREI  316 (565)
T ss_pred             eeh---hhcCCchHHHHHHH
Confidence            543   67888887776544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.80  E-value=6.6e-09  Score=53.32  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=33.8

Q ss_pred             CCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccC
Q 046349           11 STLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLL   51 (119)
Q Consensus        11 ~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp   51 (119)
                      ++|++|++++|+|+.+|+.+++|++|+.|++++|+ +..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            47999999999999999999999999999999998 44444

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.79  E-value=2.5e-10  Score=75.00  Aligned_cols=111  Identities=23%  Similarity=0.256  Sum_probs=61.2

Q ss_pred             cChhccCCCCCCEEeccCC-------------------------CCccCChhhhcCCCCCEEeccCcccccccCCC---C
Q 046349            3 LPESLGQLSTLEELFLVKN-------------------------NFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---P   54 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n-------------------------~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~   54 (119)
                      +|..||.++.|+.||+++|                         .|..+|+.++++++|+.|.+..|. +-.+|..   +
T Consensus        94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~l  172 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDL  172 (264)
T ss_pred             CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHH
Confidence            5666677777766666655                         445555566666666666666666 4455654   3


Q ss_pred             CCCceeeccCCCCccccCccccCcCceeecCccCCCcccccchHHHHHHHHHHHHHHHHHHhhh
Q 046349           55 CSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATAHWKEARE  118 (119)
Q Consensus        55 ~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~r~  118 (119)
                      ..|+.|++.+ +.+..+|+.++++.-+.-....++..|..-.   ....+++.....++..+|.
T Consensus       173 t~lrelhiqg-nrl~vlppel~~l~l~~~k~v~r~E~NPwv~---pIaeQf~lG~shV~~yirt  232 (264)
T KOG0617|consen  173 TRLRELHIQG-NRLTVLPPELANLDLVGNKQVMRMEENPWVN---PIAEQFLLGISHVIDYIRT  232 (264)
T ss_pred             HHHHHHhccc-ceeeecChhhhhhhhhhhHHHHhhhhCCCCC---hHHHHHHhhHHHHHHHHhh
Confidence            4566677776 4566677776643222222223344444332   2233344455566666554

>PLN03150 hypothetical protein; Provisional

Probab=98.76  E-value=1.3e-08  Score=78.51  Aligned_cols=85  Identities=21%  Similarity=0.180  Sum_probs=69.0

Q ss_pred             CCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCceeecCccC
Q 046349           13 LEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFK   88 (119)
Q Consensus        13 L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~~~~~   88 (119)
                      ++.|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|..   +.+|+.|++++|...+.+|..++++..|..+   +
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L---~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL---N  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE---E
Confidence            778999999999 89999999999999999999988999975   5789999999999999999988866554333   3


Q ss_pred             CCcccccchHHH
Q 046349           89 LDRNEARGIVED  100 (119)
Q Consensus        89 l~~~~~~~~~~~  100 (119)
                      +..|...+.++.
T Consensus       497 Ls~N~l~g~iP~  508 (623)
T PLN03150        497 LNGNSLSGRVPA  508 (623)
T ss_pred             CcCCcccccCCh
Confidence            444444444333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.72  E-value=2.9e-09  Score=81.51  Aligned_cols=76  Identities=25%  Similarity=0.309  Sum_probs=65.3

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCccccC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIFS   77 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~~   77 (119)
                      -||..|..+..|..||||+|++.++|..+...+++..|++|+|+ +.+||..    +..|-.||+++ +.+..+|+.+.+
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RR  171 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRR  171 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHH
Confidence            37899999999999999999999999999999999999999998 7888875    45677889987 678889988775


Q ss_pred             cC
Q 046349           78 SY   79 (119)
Q Consensus        78 l~   79 (119)
                      +.
T Consensus       172 L~  173 (1255)
T KOG0444|consen  172 LS  173 (1255)
T ss_pred             Hh
Confidence            43

>PLN03210 Resistant to P

Probab=98.63  E-value=9.5e-08  Score=78.16  Aligned_cols=82  Identities=27%  Similarity=0.329  Sum_probs=38.2

Q ss_pred             hhccCCCCCCEEeccCCC-CccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccc--cCc
Q 046349            5 ESLGQLSTLEELFLVKNN-FVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLI--FSS   78 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~-l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~--~~l   78 (119)
                      .++..+++|++++++++. +..+|. +..+++|+.|++++|..+..+|..   +.+|+.|++++|+.++.+|..+  .++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL  706 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL  706 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence            334444444444444432 223432 444445555555554444444443   2445555555555555555432  244


Q ss_pred             CceeecCcc
Q 046349           79 YEIDLSCNF   87 (119)
Q Consensus        79 ~~l~~~~~~   87 (119)
                      ..|.+.+|.
T Consensus       707 ~~L~Lsgc~  715 (1153)
T PLN03210        707 YRLNLSGCS  715 (1153)
T ss_pred             CEEeCCCCC
Confidence            445555553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.54  E-value=2.5e-07  Score=75.73  Aligned_cols=60  Identities=30%  Similarity=0.466  Sum_probs=37.3

Q ss_pred             CcChhccCCCCCCEEeccCCC-CccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeec
Q 046349            2 ELPESLGQLSTLEELFLVKNN-FVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDA   62 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~-l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l   62 (119)
                      ++|.+++++++|+.|++++|. +..+|..+ .+++|+.|++++|..+..+|..+.+++.|++
T Consensus       793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~L  853 (1153)
T PLN03210        793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNL  853 (1153)
T ss_pred             ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeEC
Confidence            367777778888888887653 55777655 5667777777776555555543333333333

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.48  E-value=1.3e-08  Score=77.27  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=13.0

Q ss_pred             cCCCcccccchHHHHHHHHHHHHH
Q 046349           87 FKLDRNEARGIVEDALQEIQLMAT  110 (119)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~l~~  110 (119)
                      +++..|...++...+|..+ ++.+
T Consensus       421 LdL~~NaiaSIq~nAFe~m-~Lk~  443 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFEPM-ELKE  443 (873)
T ss_pred             ecCCCCcceeecccccccc-hhhh
Confidence            3555666666666666655 4433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.47  E-value=1.9e-09  Score=78.48  Aligned_cols=90  Identities=33%  Similarity=0.416  Sum_probs=55.9

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      ++|++++.+..|+.++..+|+++++|+.++.+.+|..+++.+|+ +..+|+.   +..|+.+++.. +.++++|+.++.+
T Consensus       128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l  205 (565)
T KOG0472|consen  128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGL  205 (565)
T ss_pred             ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcch
Confidence            45566666666666666666666666666666666666666666 4444443   45677787776 5788899988866


Q ss_pred             CceeecCccCCCcccccc
Q 046349           79 YEIDLSCNFKLDRNEARG   96 (119)
Q Consensus        79 ~~l~~~~~~~l~~~~~~~   96 (119)
                      ..+   .|+.+.+|....
T Consensus       206 ~~L---~~LyL~~Nki~~  220 (565)
T KOG0472|consen  206 ESL---ELLYLRRNKIRF  220 (565)
T ss_pred             hhh---HHHHhhhccccc
Confidence            554   334555554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.42  E-value=1.3e-07  Score=51.57  Aligned_cols=44  Identities=39%  Similarity=0.653  Sum_probs=38.9

Q ss_pred             CcCh-hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcc
Q 046349            2 ELPE-SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         2 ~lP~-~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~   45 (119)
                      ++|. .|.++++|++|++++|.++.+|+ .|.++++|++|++++|+
T Consensus        15 ~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   15 EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3554 67899999999999999997775 78999999999999997

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.37  E-value=3.1e-08  Score=76.03  Aligned_cols=77  Identities=27%  Similarity=0.324  Sum_probs=56.0

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      -+|.++..+.+|..+|+|.|.+..+|+++..+.+|+.|++|+|++ ..+-..   ..+++.|+++.| -+..+|..++++
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL  290 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRN-QLTVLPDAVCKL  290 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccc-hhccchHHHhhh
Confidence            378888889999999999999988999888888999998888873 333322   345666777663 455566666654


Q ss_pred             Cc
Q 046349           79 YE   80 (119)
Q Consensus        79 ~~   80 (119)
                      ..
T Consensus       291 ~k  292 (1255)
T KOG0444|consen  291 TK  292 (1255)
T ss_pred             HH
Confidence            43

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.24  E-value=3.3e-07  Score=69.79  Aligned_cols=104  Identities=20%  Similarity=0.232  Sum_probs=65.6

Q ss_pred             ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc-cccCcCce
Q 046349            7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG-LIFSSYEI   81 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~-~~~~l~~l   81 (119)
                      |-.|.++++|+|..|+++.+-+ ++.+|++|+.|++|+|.+...-++.   ..+|+.|+++.| .+..+++ .|.   .|
T Consensus       265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~---~L  340 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFR---VL  340 (873)
T ss_pred             eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHH---HH
Confidence            4567777777777777775554 6777788888888888744444443   356788888874 4445544 333   23


Q ss_pred             eecCccCCCcccccchHHHHHHHHHHHHHHHHH
Q 046349           82 DLSCNFKLDRNEARGIVEDALQEIQLMATAHWK  114 (119)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~  114 (119)
                      ..+.-+++..|+.+.+...++.++..+....+.
T Consensus       341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             HHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence            333334666777777777777777766654443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.24  E-value=1.1e-07  Score=71.94  Aligned_cols=90  Identities=28%  Similarity=0.432  Sum_probs=61.3

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCC--CCceeeccCCCCccccCccccCcC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPC--SLLELDAHHCTVLDTLSGLIFSSY   79 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~--~L~~L~l~~~~~~~~lp~~~~~l~   79 (119)
                      .+|..++.+..|..||.+.|.+..+|..++++.+|+.|.+..|. +..+|+.+.  .|..||++ ||.+..+|-.|.+++
T Consensus       157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~  234 (722)
T KOG0532|consen  157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMR  234 (722)
T ss_pred             cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecc-cCceeecchhhhhhh
Confidence            46666776677777777777777777777777777777777776 445555543  36778888 477888999888776


Q ss_pred             ceeecCccCCCcccccc
Q 046349           80 EIDLSCNFKLDRNEARG   96 (119)
Q Consensus        80 ~l~~~~~~~l~~~~~~~   96 (119)
                      .|..+   .++.|...+
T Consensus       235 ~Lq~l---~LenNPLqS  248 (722)
T KOG0532|consen  235 HLQVL---QLENNPLQS  248 (722)
T ss_pred             hheee---eeccCCCCC
Confidence            65443   566666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.23  E-value=2.9e-07  Score=67.08  Aligned_cols=105  Identities=23%  Similarity=0.211  Sum_probs=74.5

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcc-cc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGL-IF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~-~~   76 (119)
                      +||..+.  ..-..++|..|+|+.||+ +|+.+++|+.|||+.|.+...-|+.   +.++..|.+.+++.+..+|.. |+
T Consensus        60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            4555543  335778899999999987 7999999999999999854444444   456666777777888888874 45


Q ss_pred             CcCceeecCccCCCcccccchHHHHHHHHHHHHHH
Q 046349           77 SSYEIDLSCNFKLDRNEARGIVEDALQEIQLMATA  111 (119)
Q Consensus        77 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  111 (119)
                      .+..+..+   .+..+....+...+++.++.+...
T Consensus       138 gL~slqrL---llNan~i~Cir~~al~dL~~l~lL  169 (498)
T KOG4237|consen  138 GLSSLQRL---LLNANHINCIRQDALRDLPSLSLL  169 (498)
T ss_pred             hHHHHHHH---hcChhhhcchhHHHHHHhhhcchh
Confidence            55444332   455666778888888888877443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.20  E-value=2.1e-06  Score=67.79  Aligned_cols=62  Identities=29%  Similarity=0.247  Sum_probs=27.2

Q ss_pred             CCEEeccCcccccccCCCCCCCceeeccCCCCccccCccccCcCceeecCccCCCcccccchHHHHH
Q 046349           36 LKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGIVEDAL  102 (119)
Q Consensus        36 L~~L~l~~n~~~~~lp~~~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~  102 (119)
                      |+.|++++|+ +..+|..+.+|+.|++++| .+..+|..++++..+.   .+.+..|.+.+.....+
T Consensus       404 L~~LdLS~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~---~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        404 LKELMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSET---TVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCEEEccCCc-CCCCCcchhhhhhhhhccC-cccccChHHhhccCCC---eEECCCCCCCchHHHHH
Confidence            4444444444 2334443344444555443 2335555555433322   23455555554443333

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.19  E-value=3.5e-06  Score=66.54  Aligned_cols=57  Identities=33%  Similarity=0.497  Sum_probs=31.6

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeeccC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHH   64 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l~~   64 (119)
                      ++|..+.  .+|+.|++++|+++.+|..   +++|++|++++|+ +..+|..+.+|+.|++++
T Consensus       215 sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~lp~sL~~L~Ls~  271 (788)
T PRK15387        215 TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVLPPGLLELSIFS  271 (788)
T ss_pred             cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCcccccceeeccC
Confidence            3565554  3566666666666666642   3566666666665 334554444454444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.18  E-value=2e-06  Score=56.66  Aligned_cols=60  Identities=30%  Similarity=0.378  Sum_probs=23.8

Q ss_pred             hcc-CCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCC----CCCCCceeeccCCCC
Q 046349            6 SLG-QLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLK----LPCSLLELDAHHCTV   67 (119)
Q Consensus         6 ~~~-~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~----~~~~L~~L~l~~~~~   67 (119)
                      .++ .+.+|+.|++++|.++.++ .+..++.|+.|++++|+ +..+++    .+++|+.|++++|..
T Consensus        36 ~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~I  100 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNKI  100 (175)
T ss_dssp             S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS--
T ss_pred             chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCcC
Confidence            344 4678888888888888775 57778888888888888 445543    257888888887643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.13  E-value=7.5e-06  Score=64.61  Aligned_cols=69  Identities=19%  Similarity=0.319  Sum_probs=28.1

Q ss_pred             CCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCccccCcccc-CcCceeec
Q 046349           12 TLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLDTLSGLIF-SSYEIDLS   84 (119)
Q Consensus        12 ~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~~lp~~~~-~l~~l~~~   84 (119)
                      +|++|++++|.++.+|..+.  .+|+.|++++|. +..+|.. ..+|+.|++++| .+..+|..+. +++.|++.
T Consensus       221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECC
Confidence            34444444444444443322  134444444444 2233332 234555555543 2334554332 33344443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.11  E-value=4.8e-06  Score=54.84  Aligned_cols=86  Identities=23%  Similarity=0.257  Sum_probs=38.6

Q ss_pred             hccCCCCCCEEeccCCCCccCChhh-hcCCCCCEEeccCcccccccCCC-----CCCCceeeccCCCCccccCc----cc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESI-MQLSKLKFLNLSYSERLQSLLKL-----PCSLLELDAHHCTVLDTLSG----LI   75 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~-~~l~~L~~L~l~~n~~~~~lp~~-----~~~L~~L~l~~~~~~~~lp~----~~   75 (119)
                      .+..++.|+.|++++|.++.+++.+ ..+++|+.|++++|+ +..+-+.     +++|+.|++.+|..... +.    -+
T Consensus        59 ~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi  136 (175)
T PF14580_consen   59 GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVI  136 (175)
T ss_dssp             T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHH
T ss_pred             CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHH
Confidence            5678899999999999999998766 479999999999998 4444432     57899999999765432 21    12


Q ss_pred             cCcCceeecCccCCCccc
Q 046349           76 FSSYEIDLSCNFKLDRNE   93 (119)
Q Consensus        76 ~~l~~l~~~~~~~l~~~~   93 (119)
                      ..++.|..++-..+....
T Consensus       137 ~~lP~Lk~LD~~~V~~~E  154 (175)
T PF14580_consen  137 YKLPSLKVLDGQDVTEEE  154 (175)
T ss_dssp             HH-TT-SEETTEETTS-B
T ss_pred             HHcChhheeCCEEccHHH
Confidence            344455555544444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.09  E-value=1.2e-06  Score=63.87  Aligned_cols=87  Identities=18%  Similarity=0.179  Sum_probs=67.7

Q ss_pred             hccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCccccCcCc
Q 046349            6 SLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIFSSYE   80 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~~l~~   80 (119)
                      .|..+++|+.|++++|.++.+ +.+|.++.+++.|.+..|+ +..+...    +.+|+.|++++|+.....|..|..+. 
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-  346 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-  346 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccc-
Confidence            378899999999999999955 4589999999999999998 5555443    67899999999887777777777433 


Q ss_pred             eeecCccCCCcccccc
Q 046349           81 IDLSCNFKLDRNEARG   96 (119)
Q Consensus        81 l~~~~~~~l~~~~~~~   96 (119)
                        .+..+++..|++..
T Consensus       347 --~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  347 --SLSTLNLLSNPFNC  360 (498)
T ss_pred             --eeeeeehccCcccC
Confidence              33444666666653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.07  E-value=9.9e-06  Score=63.96  Aligned_cols=77  Identities=19%  Similarity=0.329  Sum_probs=58.9

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCccccCcccc-CcC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLDTLSGLIF-SSY   79 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~~lp~~~~-~l~   79 (119)
                      ++|..+.  ++|+.|++++|.++.+|..+.  .+|+.|++++|+ +..+|.. +.+|+.|++++|+ +..+|..+. +++
T Consensus       192 sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~-L~~LP~~l~s~L~  265 (754)
T PRK15370        192 TIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLPDTIQEMELSINR-ITELPERLPSALQ  265 (754)
T ss_pred             cCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhhccccEEECcCCc-cCcCChhHhCCCC
Confidence            4565553  579999999999999998765  589999999998 5678875 4679999999976 447787654 455


Q ss_pred             ceeec
Q 046349           80 EIDLS   84 (119)
Q Consensus        80 ~l~~~   84 (119)
                      .|++.
T Consensus       266 ~L~Ls  270 (754)
T PRK15370        266 SLDLF  270 (754)
T ss_pred             EEECc
Confidence            55554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.03  E-value=6.3e-07  Score=70.89  Aligned_cols=45  Identities=31%  Similarity=0.392  Sum_probs=32.5

Q ss_pred             ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCC
Q 046349            7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLK   52 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~   52 (119)
                      +-+.++|+.|+|++|.+..+|+ .+.++..|++|++|+|+ +..+|.
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~  424 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPD  424 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhH
Confidence            4566777788888887777776 46777777777777777 556554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.02  E-value=2.4e-06  Score=68.35  Aligned_cols=63  Identities=33%  Similarity=0.458  Sum_probs=38.9

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHH   64 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~   64 (119)
                      ++|++|+++-+|++|++++..+..+|..++++++|.+|++.++..+..+|..   +.+|++|.+..
T Consensus       586 ~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  586 KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            3566666666666666666666666666666666666666666544445443   45566665543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.93  E-value=1.8e-06  Score=68.40  Aligned_cols=84  Identities=31%  Similarity=0.353  Sum_probs=59.9

Q ss_pred             cChh-ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCc-cccCccc--c
Q 046349            3 LPES-LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVL-DTLSGLI--F   76 (119)
Q Consensus         3 lP~~-~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~-~~lp~~~--~   76 (119)
                      +|.+ +.++..|+.|++|||+++.+|..+..+..|++|..-+|+ +..+|+.  ++.|+.+|++.|++. ..+|...  .
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p  476 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSP  476 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence            5654 678888999999999999899888888888888888887 6677765  467888888876553 2333332  2


Q ss_pred             CcCceeecCcc
Q 046349           77 SSYEIDLSCNF   87 (119)
Q Consensus        77 ~l~~l~~~~~~   87 (119)
                      +++.|+++++.
T Consensus       477 ~LkyLdlSGN~  487 (1081)
T KOG0618|consen  477 NLKYLDLSGNT  487 (1081)
T ss_pred             ccceeeccCCc
Confidence            45556665543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.75  E-value=1.3e-05  Score=58.41  Aligned_cols=69  Identities=32%  Similarity=0.468  Sum_probs=38.3

Q ss_pred             cChhccCCC-CCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCC---CCCCCceeeccCCCCccccCc
Q 046349            3 LPESLGQLS-TLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLK---LPCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus         3 lP~~~~~l~-~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~---~~~~L~~L~l~~~~~~~~lp~   73 (119)
                      +|+..+.+. +|+.|++++|.+..+|..++.+++|+.|++++|+ +..+|.   ....|+.|++++ +.+..+|.
T Consensus       131 i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~  203 (394)
T COG4886         131 IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG-NKISDLPP  203 (394)
T ss_pred             CccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccC-CccccCch
Confidence            444444453 5666666666666665556666666666666665 444444   234555666665 33444544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.74  E-value=1.5e-05  Score=63.87  Aligned_cols=69  Identities=26%  Similarity=0.397  Sum_probs=54.7

Q ss_pred             ccCCCCCCEEeccCCC-CccCChhhhcCCCCCEEeccCcccccccCCCC---CCCceeeccCCCCccccCcccc
Q 046349            7 LGQLSTLEELFLVKNN-FVRIPESIMQLSKLKFLNLSYSERLQSLLKLP---CSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~-l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~---~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      |..++.|+.||+++|. +..+|..|+.|-+|++|++++.. ...+|..+   ..|.+|++..+.....+|....
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~  639 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL  639 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhh
Confidence            6779999999999775 56999999999999999999998 67888874   5677888887665555554433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.73  E-value=8.9e-06  Score=57.99  Aligned_cols=58  Identities=29%  Similarity=0.242  Sum_probs=45.2

Q ss_pred             cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349            8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT   66 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~   66 (119)
                      .-++.|+.+|+|+|.|+.+.++.+-+++++.|++|+|. +..+...  +++|+.||+++|.
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~  340 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNL  340 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccch
Confidence            34577888999999999888888888999999999987 3344332  5788888888754

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.73  E-value=8.1e-06  Score=35.50  Aligned_cols=21  Identities=43%  Similarity=0.485  Sum_probs=15.7

Q ss_pred             CCCEEeccCCCCccCChhhhc
Q 046349           12 TLEELFLVKNNFVRIPESIMQ   32 (119)
Q Consensus        12 ~L~~L~ls~n~l~~lP~~~~~   32 (119)
                      +|++||+++|.++.+|++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467888888888878776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.70  E-value=4.1e-06  Score=63.62  Aligned_cols=77  Identities=35%  Similarity=0.402  Sum_probs=62.1

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCC--CCceeeccCCCCccccCccccCcC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPC--SLLELDAHHCTVLDTLSGLIFSSY   79 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~--~L~~L~l~~~~~~~~lp~~~~~l~   79 (119)
                      ++|..+..+..|+.+.+..|.+..+|+.+..+..|.++|++.|+ +..+|..+.  -|+.|.+++ +.++.+|..++.+.
T Consensus        89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~  166 (722)
T KOG0532|consen   89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLP  166 (722)
T ss_pred             cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCcceeEEEec-CccccCCcccccch
Confidence            57778888888888888999998999999999999999999998 777887643  478888875 67888888888444


Q ss_pred             c
Q 046349           80 E   80 (119)
Q Consensus        80 ~   80 (119)
                      .
T Consensus       167 t  167 (722)
T KOG0532|consen  167 T  167 (722)
T ss_pred             h
Confidence            3

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.64  E-value=7e-05  Score=55.40  Aligned_cols=67  Identities=16%  Similarity=0.285  Sum_probs=48.9

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCccccCcccc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      +..+.++..|++++|.++.+|.   -..+|+.|.+++|..+..+|+. +.+|+.|++.+|..+..+|..+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccccc
Confidence            3456888999999988888882   2346888888887767777764 46788888888766666766554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.57  E-value=2.3e-05  Score=55.94  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=34.2

Q ss_pred             cChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCccc
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSER   46 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~   46 (119)
                      +..+..-.+.++.|++|+|.+..+-. +..+.+|+.||+|+|.+
T Consensus       299 iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  299 IDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLL  341 (490)
T ss_pred             hhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchh
Confidence            44556667888999999999887654 88889999999999873

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.53  E-value=4.1e-05  Score=55.89  Aligned_cols=74  Identities=28%  Similarity=0.350  Sum_probs=57.6

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFS   77 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~   77 (119)
                      ++|..++.+++|+.|++++|.+..+|...+.++.|+.|++++|+ +..+|..   +..|+.+.+++|. ....+..+.+
T Consensus       154 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~  230 (394)
T COG4886         154 SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSN  230 (394)
T ss_pred             hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhh
Confidence            35567899999999999999999999888899999999999998 7778774   3458888888753 3334443443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.50  E-value=5.8e-05  Score=53.14  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=16.0

Q ss_pred             CCCCEEeccCCCCc-----cCChhhhcCCCCCEEeccCcc
Q 046349           11 STLEELFLVKNNFV-----RIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus        11 ~~L~~L~ls~n~l~-----~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      ++|+.|++++|.++     .++..+..+.+|+.|++++|.
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            44555555555444     122233444445555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.45  E-value=6.4e-05  Score=52.94  Aligned_cols=42  Identities=24%  Similarity=0.155  Sum_probs=24.9

Q ss_pred             hhccCCCCCCEEeccCCCCc-cCChhhhcCCC---CCEEeccCccc
Q 046349            5 ESLGQLSTLEELFLVKNNFV-RIPESIMQLSK---LKFLNLSYSER   46 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~---L~~L~l~~n~~   46 (119)
                      ..++.+++|+.|++++|.+. ..+..+..+..   |+.|++++|.+
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~  120 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL  120 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence            34555666777777766665 44444544444   66666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.44  E-value=0.00013  Score=37.17  Aligned_cols=27  Identities=37%  Similarity=0.528  Sum_probs=24.0

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCCh
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPE   28 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~   28 (119)
                      .+|+.+++|++|++|++++|.++.+|+
T Consensus        15 ~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen   15 DLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            578889999999999999999997764

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.40  E-value=1.5e-05  Score=50.82  Aligned_cols=75  Identities=19%  Similarity=0.237  Sum_probs=53.4

Q ss_pred             cCCCCCCEEeccCCCCccCChhhhcC-CCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCceee
Q 046349            8 GQLSTLEELFLVKNNFVRIPESIMQL-SKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEIDL   83 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~~~~~l-~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~   83 (119)
                      .....|...++++|.|+.+|+.+... +-++.+++++|+ +..+|..   ++.|+.+++.. +.+...|.-+..+.+++.
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDM  127 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHH
Confidence            44556777788888888888877554 478888888888 7778875   46788888886 445566766665555544


Q ss_pred             c
Q 046349           84 S   84 (119)
Q Consensus        84 ~   84 (119)
                      +
T Consensus       128 L  128 (177)
T KOG4579|consen  128 L  128 (177)
T ss_pred             h
Confidence            4

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.22  E-value=0.00065  Score=50.41  Aligned_cols=55  Identities=25%  Similarity=0.302  Sum_probs=28.0

Q ss_pred             CCCEEeccCcccccccCC-CCCCCceeeccCCC------CccccCccccCcCceeecCccCCCcccc
Q 046349           35 KLKFLNLSYSERLQSLLK-LPCSLLELDAHHCT------VLDTLSGLIFSSYEIDLSCNFKLDRNEA   94 (119)
Q Consensus        35 ~L~~L~l~~n~~~~~lp~-~~~~L~~L~l~~~~------~~~~lp~~~~~l~~l~~~~~~~l~~~~~   94 (119)
                      +|++|++++|... .+|+ .+.+|+.|+++.+.      ....+|+.+    .+.+.+|+.++.+.+
T Consensus       157 SLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP~nl----~L~f~n~lkL~~~~f  218 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKLPESLQSITLHIEQKTTWNISFEGFPDGL----DIDLQNSVLLSPDVF  218 (426)
T ss_pred             cccEEEecCCCcc-cCcccccccCcEEEecccccccccCccccccccc----EechhhhcccCHHHh
Confidence            4566666666533 2333 34566666665432      122344333    466666666655443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.18  E-value=0.00034  Score=51.74  Aligned_cols=59  Identities=31%  Similarity=0.392  Sum_probs=46.0

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT   66 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~   66 (119)
                      ++.+++|+.+++.+|.|..+...+..+.+|++|++++|. ++.+...  +..|+.|++.+|.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNL  151 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCc
Confidence            677888899999999988777668888899999999998 4455443  5668888888854

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.14  E-value=5.4e-05  Score=48.32  Aligned_cols=71  Identities=21%  Similarity=0.335  Sum_probs=52.1

Q ss_pred             CcChhcc-CCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCC---CCCceeeccCCCCccccCcc
Q 046349            2 ELPESLG-QLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLP---CSLLELDAHHCTVLDTLSGL   74 (119)
Q Consensus         2 ~lP~~~~-~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~---~~L~~L~l~~~~~~~~lp~~   74 (119)
                      .+|+.|. ..+.++.+++++|.+..+|.++..++.|+.++++.|. +...|..+   .++-.|+..+ +....+|-.
T Consensus        67 ~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~-na~~eid~d  141 (177)
T KOG4579|consen   67 KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPE-NARAEIDVD  141 (177)
T ss_pred             hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence            4666664 3457899999999999999999999999999999998 55666653   3444555555 344555543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=97.01  E-value=0.00042  Score=28.06  Aligned_cols=16  Identities=31%  Similarity=0.509  Sum_probs=7.8

Q ss_pred             CCCEEeccCCCCccCC
Q 046349           12 TLEELFLVKNNFVRIP   27 (119)
Q Consensus        12 ~L~~L~ls~n~l~~lP   27 (119)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666666666666554

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.82  E-value=0.00027  Score=55.71  Aligned_cols=64  Identities=41%  Similarity=0.585  Sum_probs=50.4

Q ss_pred             hhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-C--CCCceeeccCCCCcccc
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-P--CSLLELDAHHCTVLDTL   71 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-~--~~L~~L~l~~~~~~~~l   71 (119)
                      .++.-++.|+.|||++|+++.+- .+..+.+|++||+++|. +..+|.. +  ..|..|.+.+| .+.++
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN-~l~tL  247 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNN-ALTTL  247 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeeccc-HHHhh
Confidence            44566788999999999999765 79999999999999998 7788875 2  34888888874 44444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.71  E-value=0.0019  Score=28.82  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=16.9

Q ss_pred             CCCCCEEeccCCCCccCChhh
Q 046349           10 LSTLEELFLVKNNFVRIPESI   30 (119)
Q Consensus        10 l~~L~~L~ls~n~l~~lP~~~   30 (119)
                      +++|++|++++|.++.+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467889999999988888753

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.71  E-value=0.0019  Score=28.82  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=16.9

Q ss_pred             CCCCCEEeccCCCCccCChhh
Q 046349           10 LSTLEELFLVKNNFVRIPESI   30 (119)
Q Consensus        10 l~~L~~L~ls~n~l~~lP~~~   30 (119)
                      +++|++|++++|.++.+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467889999999988888753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.71  E-value=0.0013  Score=45.67  Aligned_cols=37  Identities=30%  Similarity=0.313  Sum_probs=17.6

Q ss_pred             CCCCCCEEeccCC--CCc-cCChhhhcCCCCCEEeccCcc
Q 046349            9 QLSTLEELFLVKN--NFV-RIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         9 ~l~~L~~L~ls~n--~l~-~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      .+++|+.|.++.|  .+. .++.....+++|+++++++|+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence            3445555555555  333 333333444555555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.60  E-value=0.00075  Score=49.92  Aligned_cols=60  Identities=30%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVL   68 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~   68 (119)
                      +..+++|++|++++|.|+.+. .+..++.|+.|++++|. +..+...  +..|+.+++++|...
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             hhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccCCccchhhhcccCCcchhh
Confidence            667999999999999999775 47888889999999998 6677665  678999999986543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.99  E-value=0.0015  Score=51.75  Aligned_cols=58  Identities=31%  Similarity=0.380  Sum_probs=44.2

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHC   65 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~   65 (119)
                      .+..+++|++||++.|++..+|. ....+. |+.|.+++|. +..+-+.  +.+|+.||+++|
T Consensus       204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhhhHHhhhhhhccchhHh
Confidence            46678999999999999998886 344454 8888888887 5555543  677888888874

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.99  E-value=0.0045  Score=48.93  Aligned_cols=56  Identities=23%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCccccc--ccCCC--CCCCceeeccC
Q 046349            8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQ--SLLKL--PCSLLELDAHH   64 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~--~lp~~--~~~L~~L~l~~   64 (119)
                      .++++|..||+|+.+++.+ .++++|++|+.|.+.+=.+..  .+-+.  +.+|+.||++.
T Consensus       170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence            4678888888888888866 678888888887776654321  11111  57788888885

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.70  E-value=0.0046  Score=46.13  Aligned_cols=62  Identities=26%  Similarity=0.219  Sum_probs=42.8

Q ss_pred             hccCCCCCCEEeccCCCCccCC---hhhhcCCCCCEEeccCcccccccCC----CCCCCceeeccCCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIP---ESIMQLSKLKFLNLSYSERLQSLLK----LPCSLLELDAHHCTV   67 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP---~~~~~l~~L~~L~l~~n~~~~~lp~----~~~~L~~L~l~~~~~   67 (119)
                      ....|++++.|||++|-|..+-   .-...+++|+.|+++.|++......    .++.++.|.++.|.+
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl  209 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL  209 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC
Confidence            3567888999999999877322   3457889999999999985433222    145677777777655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.66  E-value=0.017  Score=39.22  Aligned_cols=58  Identities=29%  Similarity=0.278  Sum_probs=30.7

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcC-CCCCEEeccCcccccccCCC-----CCCCceeeccCC
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQL-SKLKFLNLSYSERLQSLLKL-----PCSLLELDAHHC   65 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l-~~L~~L~l~~n~~~~~lp~~-----~~~L~~L~l~~~   65 (119)
                      +..+..|.+|.+++|.|+.|-+.+..+ ++|..|.+.+|. +..+-+.     ++.|++|.+-+|
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGN  123 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCC
Confidence            445556666666666666555444443 346666666665 2232221     345666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.35  E-value=0.035  Score=37.71  Aligned_cols=57  Identities=18%  Similarity=0.205  Sum_probs=44.1

Q ss_pred             CCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCC
Q 046349           10 LSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTV   67 (119)
Q Consensus        10 l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~   67 (119)
                      +.+...+|+++|.+..++ .+.++..|.+|.+.+|++...=|..   +++|..|.+.+|+.
T Consensus        41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            346788999999988665 4788999999999999954443443   57799999998654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.33  E-value=0.021  Score=39.78  Aligned_cols=79  Identities=24%  Similarity=0.181  Sum_probs=50.1

Q ss_pred             cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc--cccccCCC---CCCCceeeccCCCC--ccccCc--cccCc
Q 046349            8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE--RLQSLLKL---PCSLLELDAHHCTV--LDTLSG--LIFSS   78 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~--~~~~lp~~---~~~L~~L~l~~~~~--~~~lp~--~~~~l   78 (119)
                      ..+..|+.+.+.+..++++- .+-.|++|+.|.++.|.  ..+.++..   .++|+++++++|..  +.++++  .+.++
T Consensus        40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            34566777777777766432 35568899999999994  33444332   48899999999754  233332  23344


Q ss_pred             CceeecCcc
Q 046349           79 YEIDLSCNF   87 (119)
Q Consensus        79 ~~l~~~~~~   87 (119)
                      ..|.+.+|-
T Consensus       119 ~~Ldl~n~~  127 (260)
T KOG2739|consen  119 KSLDLFNCS  127 (260)
T ss_pred             hhhhcccCC
Confidence            456555553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.97  E-value=0.0015  Score=46.38  Aligned_cols=65  Identities=23%  Similarity=0.161  Sum_probs=44.0

Q ss_pred             cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-----CCCCceeeccCCCCccccCcc
Q 046349            8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-----PCSLLELDAHHCTVLDTLSGL   74 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-----~~~L~~L~l~~~~~~~~lp~~   74 (119)
                      ..|+.|+.|.||-|+|+.+- .+..+++|++|.|..|. +..+.+.     +++|+.|.+..|...+.-+..
T Consensus        38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~n  107 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQN  107 (388)
T ss_pred             HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchh
Confidence            45777888888888887664 47777888888887776 3344332     467777777776666655543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=94.76  E-value=0.02  Score=25.70  Aligned_cols=18  Identities=33%  Similarity=0.621  Sum_probs=13.6

Q ss_pred             CCCCEEeccCCCCccCCh
Q 046349           11 STLEELFLVKNNFVRIPE   28 (119)
Q Consensus        11 ~~L~~L~ls~n~l~~lP~   28 (119)
                      .+|++|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            357788888888887775

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.42  E-value=0.018  Score=41.91  Aligned_cols=62  Identities=24%  Similarity=0.210  Sum_probs=36.8

Q ss_pred             hccCCCCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCccccc--------ccCCCCCCCceeeccCCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSERLQ--------SLLKLPCSLLELDAHHCTV   67 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~~~~--------~lp~~~~~L~~L~l~~~~~   67 (119)
                      .+..+++|+.||+.+|.|+.     +-..+..+++|+.+++++|.+..        .+-...++|+.+.+.+|..
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            35567777777777777661     23345666677777777775311        1122245677777777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.26  E-value=0.0031  Score=44.83  Aligned_cols=52  Identities=23%  Similarity=0.206  Sum_probs=25.0

Q ss_pred             CCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccC
Q 046349           11 STLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHH   64 (119)
Q Consensus        11 ~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~   64 (119)
                      .+.+.|+..|+.+..|. .+.+|+.|+.|.|+-|+ +..+-..  ...|+.|++-.
T Consensus        19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRk   72 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRK   72 (388)
T ss_pred             HHhhhhcccCCCccHHH-HHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHh
Confidence            34445555555555332 24455566666666655 2233222  34455555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.53  E-value=0.035  Score=40.03  Aligned_cols=57  Identities=26%  Similarity=0.155  Sum_probs=40.6

Q ss_pred             CCCCCCEEeccCCCCcc---CChhhhcCCCCCEEeccCcccccc---cCCCCCCCceeeccCC
Q 046349            9 QLSTLEELFLVKNNFVR---IPESIMQLSKLKFLNLSYSERLQS---LLKLPCSLLELDAHHC   65 (119)
Q Consensus         9 ~l~~L~~L~ls~n~l~~---lP~~~~~l~~L~~L~l~~n~~~~~---lp~~~~~L~~L~l~~~   65 (119)
                      .++.++.+||.+|.|+.   +-.-+.+|+.|+.|+++.|.+...   +|.-..+|+.+.+.+-
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT  131 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT  131 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence            35678889999999884   334567899999999999986443   4422356777777653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.05  E-value=0.006  Score=43.80  Aligned_cols=79  Identities=22%  Similarity=0.206  Sum_probs=54.9

Q ss_pred             CCCEEeccCCCCc--cCChhhhcCCCCCEEeccCcccccccCCCC---CCCceeeccCCCCccccC-----ccccCcCce
Q 046349           12 TLEELFLVKNNFV--RIPESIMQLSKLKFLNLSYSERLQSLLKLP---CSLLELDAHHCTVLDTLS-----GLIFSSYEI   81 (119)
Q Consensus        12 ~L~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~---~~L~~L~l~~~~~~~~lp-----~~~~~l~~l   81 (119)
                      .|+++|||+..++  .+-.-++++++|+.|.+.++++...+-..+   .+|+.++++.|+......     .+..++..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4889999998887  566677889999999999998654443332   568899998887654432     222345567


Q ss_pred             eecCccCCC
Q 046349           82 DLSCNFKLD   90 (119)
Q Consensus        82 ~~~~~~~l~   90 (119)
                      ++..|....
T Consensus       266 NlsWc~l~~  274 (419)
T KOG2120|consen  266 NLSWCFLFT  274 (419)
T ss_pred             CchHhhccc
Confidence            777775443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=92.94  E-value=0.033  Score=41.73  Aligned_cols=79  Identities=18%  Similarity=0.075  Sum_probs=56.2

Q ss_pred             cCCCCCCEEeccCCCCccCC--hhhhcCCCCCEEeccCcccccccC-----CCCCCCceeeccCCCCcccc----Ccccc
Q 046349            8 GQLSTLEELFLVKNNFVRIP--ESIMQLSKLKFLNLSYSERLQSLL-----KLPCSLLELDAHHCTVLDTL----SGLIF   76 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP--~~~~~l~~L~~L~l~~n~~~~~lp-----~~~~~L~~L~l~~~~~~~~l----p~~~~   76 (119)
                      .++++|+...|.+..+...+  .....+++.+.||++.|-+..--|     +-+++|+.|+++.|...--.    -..+.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            35788999999988887666  367889999999999996533222     22678999999987543221    22445


Q ss_pred             CcCceeecCc
Q 046349           77 SSYEIDLSCN   86 (119)
Q Consensus        77 ~l~~l~~~~~   86 (119)
                      .++.|.+..|
T Consensus       198 ~lK~L~l~~C  207 (505)
T KOG3207|consen  198 HLKQLVLNSC  207 (505)
T ss_pred             hhheEEeccC
Confidence            6677777776

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=92.90  E-value=0.098  Score=23.46  Aligned_cols=16  Identities=44%  Similarity=0.580  Sum_probs=10.1

Q ss_pred             CCCCCEEeccCCCCcc
Q 046349           10 LSTLEELFLVKNNFVR   25 (119)
Q Consensus        10 l~~L~~L~ls~n~l~~   25 (119)
                      +++|+.|+++.|.|+.
T Consensus         1 L~~L~~L~L~~NkI~~   16 (26)
T smart00365        1 LTNLEELDLSQNKIKK   16 (26)
T ss_pred             CCccCEEECCCCccce
Confidence            3566677777776653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.64  E-value=0.06  Score=38.86  Aligned_cols=56  Identities=21%  Similarity=0.228  Sum_probs=40.4

Q ss_pred             cCCCCCCEEeccCCC-Cc-cCChhhhcCCCCCEEeccCcccccccCCC------CCCCceeeccCC
Q 046349            8 GQLSTLEELFLVKNN-FV-RIPESIMQLSKLKFLNLSYSERLQSLLKL------PCSLLELDAHHC   65 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~-l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~------~~~L~~L~l~~~   65 (119)
                      ..+++|..||||+|. ++ .+-..|.++..|++|.++.|.  +.+|..      .++|.+|++.+|
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence            357788888888764 44 444567888888888888885  344542      467888888876

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.14  E-value=0.042  Score=23.82  Aligned_cols=14  Identities=36%  Similarity=0.411  Sum_probs=7.6

Q ss_pred             CCCCEEeccCCCCc
Q 046349           11 STLEELFLVKNNFV   24 (119)
Q Consensus        11 ~~L~~L~ls~n~l~   24 (119)
                      ++|++|++++|.|.
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45666666666655

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=91.23  E-value=0.088  Score=41.86  Aligned_cols=53  Identities=19%  Similarity=0.281  Sum_probs=29.2

Q ss_pred             CCCCCEEeccCCCCc--cCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeecc
Q 046349           10 LSTLEELFLVKNNFV--RIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAH   63 (119)
Q Consensus        10 l~~L~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~   63 (119)
                      +++|+.|.+++-.+.  .+-.-..++++|..||+|+.+ +..+-+.  +.+|+.|.+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMR  203 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhcc
Confidence            566677766665554  333445566777777777766 3333221  3445544444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.47  E-value=0.38  Score=34.46  Aligned_cols=46  Identities=26%  Similarity=0.333  Sum_probs=37.6

Q ss_pred             hccCCCCCCEEeccCCCCc-cCChh----hhcCCCCCEEeccCcccccccCC
Q 046349            6 SLGQLSTLEELFLVKNNFV-RIPES----IMQLSKLKFLNLSYSERLQSLLK   52 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~-~lP~~----~~~l~~L~~L~l~~n~~~~~lp~   52 (119)
                      .+-+|++|+..++|.|.|. ..|+.    |++-+.|.+|.+++|. +|.+..
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG  137 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAG  137 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccch
Confidence            4567899999999999998 77764    5677899999999998 666654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=89.10  E-value=0.38  Score=21.68  Aligned_cols=14  Identities=36%  Similarity=0.394  Sum_probs=9.9

Q ss_pred             CCCCEEeccCCCCc
Q 046349           11 STLEELFLVKNNFV   24 (119)
Q Consensus        11 ~~L~~L~ls~n~l~   24 (119)
                      ++|++|||++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            45777777777765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.93  E-value=0.34  Score=35.15  Aligned_cols=38  Identities=32%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             ccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCc
Q 046349            7 LGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYS   44 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n   44 (119)
                      +.+|+.|+.|+++.|.+. .|-..-..+.+|+.|-+.+.
T Consensus        93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT  131 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT  131 (418)
T ss_pred             HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence            467899999999999876 22111133445555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=82.20  E-value=2.4  Score=31.26  Aligned_cols=16  Identities=19%  Similarity=0.310  Sum_probs=7.7

Q ss_pred             hhcCCCCCEEeccCcc
Q 046349           30 IMQLSKLKFLNLSYSE   45 (119)
Q Consensus        30 ~~~l~~L~~L~l~~n~   45 (119)
                      +..+++|+.||+.+|-
T Consensus       209 l~~~~~LevLdl~DNt  224 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNT  224 (382)
T ss_pred             HHhCCcceeeecccch
Confidence            3444455555555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.37  E-value=0.042  Score=38.35  Aligned_cols=73  Identities=16%  Similarity=0.146  Sum_probs=49.2

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCC---CceeeccCCCCccccCccccCcCc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCS---LLELDAHHCTVLDTLSGLIFSSYE   80 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~---L~~L~l~~~~~~~~lp~~~~~l~~   80 (119)
                      ++.....-..||++.|.+..+-..+..++.+..|+++.|. ...+|.....   +..++... +.....|.+++....
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCC
Confidence            3455666777888888777777777777888888888777 6667766433   44455544 556777777775544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 1   MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSL 50
           MELP+++ Q + LE L L +N    +P SI  L++L+ L++     L  L
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCS----- 56
           + P+   +LS L+ + +     + +P+++ Q + L+ L L+ +     L  LP S     
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN----PLRALPASIASLN 150

Query: 57  -LLELDAHHCTVLDTL 71
            L EL    C  L  L
Sbjct: 151 RLRELSIRACPELTEL 166

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSL---LKLPCSLL 58
            LP S+  L  L+ L +  +    +  +I  L KL+ L+L     L++          L 
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 59  ELDAHHCTVLDTL 71
            L    C+ L TL
Sbjct: 257 RLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2   ELPESLGQLSTLEELFLV-KNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLEL 60
             P   G  + L+ L L   +N + +P  I +L++L+ L+L     L  L  L   L   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 2   ELPESLGQLSTLEELFLVKN-NFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSL 57
            LP  + +L+ LE+L L    N  R+P  I QL     + +    + Q     P + 
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 21/77 (27%), Positives = 25/77 (32%), Gaps = 10/77 (12%)

Query: 1   MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLP------ 54
            +       L  L+ L L       +P SI  L  LK L +  S     L  L       
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS----PLSALGPAIHHL 228

Query: 55  CSLLELDAHHCTVLDTL 71
             L ELD   CT L   
Sbjct: 229 PKLEELDLRGCTALRNY 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 12/72 (16%)

Query: 2   ELPESLGQLS--TLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLP----- 54
              + L   +      L L      + P+   +LS L+ + +  +     L++LP     
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA----GLMELPDTMQQ 125

Query: 55  -CSLLELDAHHC 65
              L  L     
Sbjct: 126 FAGLETLTLARN 137

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY 43
            +P+ L Q+ TL  L    N     +P SI  L  L  +    
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY 43
            +P ++ +L+ L  L++   N    IP+ + Q+  L  L+ SY
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 6   SLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY 43
            +G    L  L L  N     +P+ + QL  L  LN+S+
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 3   LPESLGQLSTLEELFLVKNNFV--RIPESIMQLSKLKFLNLSY 43
           +P SL  L  L  L++   N +   IP +I +L++L +L +++
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY 43
           +     G     +++ L KN+    +   +     L  L+L  
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN 253

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIP-ESIMQLSKLKFLNLSYSERLQ-----SLLKLP 54
            +P   G  S LE L L  NNF   +P ++++++  LK L+LS++         SL  L 
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLS 367

Query: 55  CSLLELDAHHCTVLDTLSGLIFSS 78
            SLL LD          SG I  +
Sbjct: 368 ASLLTLDLSSN----NFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLS 42
           ++P +L   S L  L L  N     IP S+  LSKL+ L L 
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY 43
            +P SLG LS L +L L  N     IP+ +M +  L+ L L +
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY 43
               +     ++  L +  N     IP+ I  +  L  LNL +
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLS 42
           E+P  L   + L  + L  N     IP+ I +L  L  L LS
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 6   SLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY--------SERLQSLLKL 53
            LG  S L+ L +  N        +I   ++LK LN+S            L+SL  L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY 43
           E+P+ +G+L  L  L L  N+F   IP  +     L +L+L+ 
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 2   ELPESLGQ--LSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY 43
            +  +L Q   +TL+EL+L  N F  +IP ++   S+L  L+LS+
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY 43
           +   ++   + L+ L +  N FV  IP     L  L++L+L+ 
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAE 278

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSY 43
              E L +LST     +    +      +      + FL++SY
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE------RLQSLLKLPC 55
            +  SL  L+ LE LFL  ++           + L  L+LS +        L SL     
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS- 126

Query: 56  SLLELDAHHCTVLDTLSGLIFSSYEIDLS 84
            L  L+        TL      S  + L+
Sbjct: 127 GLKFLNVSSN----TLDFPGKVSGGLKLN 151

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSY---SERLQSLLKLPCSLL 58
            +  SL ++  L  L  + N       +     KL  LNL+Y   +E   +       + 
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 59  ELDAHHC 65
            L   H 
Sbjct: 381 NLSFAHN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 7/42 (16%), Positives = 20/42 (47%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSY 43
            + +S        ++  + NN   + +++M+L+KL+   +  
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGN 215

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 3   LPESLGQLSTLEELFLVKNNFVRIPESIM--QLSKLKFLNLSY 43
             E+      L  + L  N   ++ +      L  L  ++LSY
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 2   ELPESL--GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERL----------QS 49
           +L +      L  L  + L  N+F + P   +  S LK   +                + 
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 50  LLKLPCSLLELDAHHCTVLDTLSGLIFSS-YEIDLSCN 86
           +   P SL +L       +  ++  I  +   +D+  N
Sbjct: 562 ITLCP-SLTQLQIGSND-IRKVNEKITPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKLPCSLLEL 60
            L  +  +   +  + L  N   + P E     S L  +NL  +  L  + K        
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENE 482

Query: 61  DAHHCTVLDTL 71
           +  +  +L ++
Sbjct: 483 NFKNTYLLTSI 493

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 11/88 (12%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELD 61
            + +++ +L+ L+ ++   + F     ++            Y     S   L   L +++
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVE 497

Query: 62  AHHCTVLDTLSGLIFSSY---EIDLSCN 86
            ++C  +  L   ++       ++++CN
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACN 525

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 7e-05
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 2   ELPESL--GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQ----------S 49
            L +      L  L  + +  N F   P   +  S+LK   + +    +           
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 50  LLKLPCSLLELDAHHCTVLDTLSGLIFSS-YEIDLSCN 86
           +   P SL++L       +  +   +    Y +D++ N
Sbjct: 802 ITTCP-SLIQLQIGSND-IRKVDEKLTPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 10/52 (19%)

Query: 2   ELPESLGQLSTLEELFLVKNNFV----------RIPESIMQLSKLKFLNLSY 43
           +LP+ L  L  L+ L +  N  +          R+ +      K++   + Y
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELD 61
            LP    +L TLE   +  N    +P     L +L   +      L  L  LP  L +L 
Sbjct: 75  SLPALPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNP----LTHLPALPSGLCKLW 127

Query: 62  AHHCTVLDTLSGLIFSSYEIDLSCN 86
                 L +L  L     E+ +S N
Sbjct: 128 IFGNQ-LTSLPVLPPGLQELSVSDN 151

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELD 61
            LP     L   +EL +  N    +P    +L KL   N     RL SL  LP  L EL 
Sbjct: 175 SLPMLPSGL---QELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLPALPSGLKELI 227

Query: 62  AHHCTVLDTLSGLIFSSYEIDLSCNF 87
                 L +L  L     E+ +S N 
Sbjct: 228 VSGNR-LTSLPVLPSELKELMVSGNR 252

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 36.4 bits (84), Expect = 9e-04
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELD 61
            LP     L   +EL +  N    +P    +L KL   N     +L SL  LP  L EL 
Sbjct: 135 SLPVLPPGL---QELSVSDNQLASLPALPSELCKLWAYNN----QLTSLPMLPSGLQELS 187

Query: 62  AHHCTVLDTLSGLIFSSYEIDLSCN 86
                 L +L  L    Y++    N
Sbjct: 188 VSDNQ-LASLPTLPSELYKLWAYNN 211

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSL-LKLPCSLLEL 60
           +  E L  L  L  L + +N F  +P+S     K++FLNLS +  ++ +   +P +L  L
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVL 436

Query: 61  DAHHCTVLDTLSGLIFSSYEIDLSCN 86
           D  +   LD+ S  +    E+ +S N
Sbjct: 437 DVSNNN-LDSFSLFLPRLQELYISRN 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 14/97 (14%)

Query: 4   PESLGQLSTLEELFLVKNNFVR-IPESIMQLSKLKFLNLSY-----SERLQSLLKLPCSL 57
             +   LS+L++L  V+ N        I  L  LK LN+++      +  +    L  +L
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NL 151

Query: 58  LELDAHHC-------TVLDTLSGLIFSSYEIDLSCNF 87
             LD           T L  L  +   +  +DLS N 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 4   PESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPC----SLLE 59
             +    S L+EL L   +   +P  ++ LS LK L LS + + ++L ++      SL  
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTH 329

Query: 60  LDAHHCTVLDTLSGLIFSS----YEIDLSCN 86
           L     T    L      +     E+DLS +
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHD 360

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 6/42 (14%), Positives = 15/42 (35%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSY 43
            +       + +  + L  N  V I +++     L+  +L  
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 5   ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYS--ERLQSLLKLPCSLLELDA 62
             L QL  +  L L  N    +P ++  L  L+ L  S +  E +  +  LP  L EL  
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLP-RLQELLL 515

Query: 63  HH 64
            +
Sbjct: 516 CN 517

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYS--ERLQSLLKLPCSLLE 59
           ++  +L  L   + L L  NN  +I  S+  +  L+ L+L  +  +++++L  +  +L E
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEE 97

Query: 60  LDAHH 64
           L   +
Sbjct: 98  LWISY 102

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 14/97 (14%)

Query: 4   PESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSY-----SERLQSLLKLPCSL 57
           P S   L++LE L  V+     +    I QL  LK LN+++      +       L  +L
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-NL 155

Query: 58  LELDAHHC-------TVLDTLSGLIFSSYEIDLSCNF 87
           + +D  +          L  L      +  +D+S N 
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 5/86 (5%)

Query: 1  MELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLEL 60
          M +       + L+E     +N   +P     +        ++SE  ++         E+
Sbjct: 1  MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 61 DAHHCTVLDTLSGLIFSSYEIDLSCN 86
                V      L   ++E++L+  
Sbjct: 61 -----AVSRLRDCLDRQAHELELNNL 81

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELD 61
           E    L  L  L  ++   N    +P+    L  L   +      L  L +LP SL  LD
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLD 283

Query: 62  AHHCTVLDTLSGLIFSSYEIDLSCN 86
                    LS L  + Y ++ S N
Sbjct: 284 VSENI-FSGLSELPPNLYYLNASSN 307

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 10/87 (11%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELD 61
            LPE    L   E L    N+   +PE    L  L   N +    L++L  LP  L  L 
Sbjct: 85  SLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNN----LKALSDLPPLLEYLG 137

Query: 62  AHHC--TVLDTLSGLIFSSYEIDLSCN 86
             +     L  L         ID+  N
Sbjct: 138 VSNNQLEKLPELQNSS-FLKIIDVDNN 163

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 4   PESLGQLSTLEELFLVKNNFVRIPESIMQ-LSKLKFLNLSYSERLQSLLKLPCSLLELDA 62
             +   L  +  + L KN+   I +   + L KL+ L+L  +  L ++  +P S+ ++  
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHFIP-SIPDIFL 388

Query: 63  HHCTVLDTLSGLIFSSYEIDLSCN 86
                L TL  +  ++  I LS N
Sbjct: 389 SGNK-LVTLPKINLTANLIHLSEN 411

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 6/42 (14%), Positives = 15/42 (35%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSY 43
            +       + +  + L  N  V I +++     L+  +L  
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELD 61
            LP++L     +  L + +N  + +PE    L  L   +     RL +L +LP SL  LD
Sbjct: 73  SLPDNLPPQ--ITVLEITQNALISLPELPASLEYLDACDN----RLSTLPELPASLKHLD 126

Query: 62  AHHCTVLDTLSGLIFSSYEIDLSCN 86
             +   L  L  L      I+   N
Sbjct: 127 VDNNQ-LTMLPELPALLEYINADNN 150

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 4   PESLGQLSTLEELFLVKNNFVRIPESIMQ-LSKLKFLNLSYSERLQSL-----LKLPCSL 57
             +   LS L EL+L  N    IP      +  L  L+L   ++L+ +       L  +L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NL 198

Query: 58  LELDAHHC--TVLDTLSGLIFSSYEIDLSCN 86
             L+   C    +  L+ L+    E+++S N
Sbjct: 199 KYLNLGMCNIKDMPNLTPLV-GLEELEMSGN 228

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 36.3 bits (84), Expect = 9e-04
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 4   PESLGQLSTLEELFLVKNNFVRIPESI-MQLSKLKFLNLSYSERLQSL-----LKLPCSL 57
             +   LS L+EL+L  N    IP     ++  L+ L+L   +RL  +       L  +L
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NL 187

Query: 58  LELDAHHC--TVLDTLSGLIFSSYEIDLSCN 86
             L+   C    +  L+ LI    E+DLS N
Sbjct: 188 RYLNLAMCNLREIPNLTPLI-KLDELDLSGN 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.29
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.18
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.17
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.17
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.08
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.08
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.04
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.03
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.02
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.01
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.0
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.99
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.99
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.98
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.98
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.96
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.96
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.95
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.93
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.9
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.9
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.89
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.89
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.87
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.86
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.85
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.85
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.84
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.83
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.76
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.7
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.7
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.7
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.69
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.65
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.58
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.47
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.42
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.03
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.93
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.84
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.4
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.03
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.54
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.88
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.32
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	93.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.71
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.85
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	90.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.53
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	88.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	88.61

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.38  E-value=3.2e-12  Score=89.98  Aligned_cols=86  Identities=26%  Similarity=0.298  Sum_probs=63.3

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      .+|.+++++++|++|++++|.++.+|+.++.+++|+.|++++|.+.+.+|..   +++|+.|++++|+..+.+|..++.+
T Consensus       197 ~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l  276 (328)
T 4fcg_A          197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL  276 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred             cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence            4677788888888888888888878877888888888888888777777765   4567778888777777777766543


Q ss_pred             ---CceeecCcc
Q 046349           79 ---YEIDLSCNF   87 (119)
Q Consensus        79 ---~~l~~~~~~   87 (119)
                         +.|++.+|.
T Consensus       277 ~~L~~L~L~~n~  288 (328)
T 4fcg_A          277 TQLEKLDLRGCV  288 (328)
T ss_dssp             TTCCEEECTTCT
T ss_pred             CCCCEEeCCCCC
Confidence               345555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.32  E-value=6.1e-12  Score=88.55  Aligned_cols=83  Identities=27%  Similarity=0.190  Sum_probs=74.8

Q ss_pred             CcChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFS   77 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~   77 (119)
                      .+|..++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..   +++|+.|++++|+..+.+|..+++
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~  299 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ  299 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred             cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence            47888999999999999999887 89999999999999999999999999976   578999999999999999999998


Q ss_pred             cCceeec
Q 046349           78 SYEIDLS   84 (119)
Q Consensus        78 l~~l~~~   84 (119)
                      +..+...
T Consensus       300 L~~L~~l  306 (328)
T 4fcg_A          300 LPANCII  306 (328)
T ss_dssp             SCTTCEE
T ss_pred             ccCceEE
Confidence            7765443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.31  E-value=3.9e-12  Score=98.16  Aligned_cols=71  Identities=23%  Similarity=0.321  Sum_probs=38.7

Q ss_pred             cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc
Q 046349            3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~   73 (119)
                      +|.+++++++|+.|++++|.++ .+|+.++.+++|+.||+++|++.|.+|..   +++|++|++++|+..|.+|.
T Consensus       648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            4555555555555555555555 55555555555555555555555555543   23455555555555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=1.6e-11  Score=94.67  Aligned_cols=99  Identities=20%  Similarity=0.206  Sum_probs=78.7

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      .+|..++++++|++|+|++|.|+.+|..|+.+++|++|+|++|.+ ..+|..   +.+|++|++++|. ++.+|..++.+
T Consensus       238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l  315 (727)
T 4b8c_D          238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNL  315 (727)
T ss_dssp             CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSC
T ss_pred             CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCCEEECCCCC-CCccChhhhcC
Confidence            478888899999999999999999999999999999999999984 488876   4679999999864 56889888866


Q ss_pred             CceeecCccCCCcccccchHHHHHHHH
Q 046349           79 YEIDLSCNFKLDRNEARGIVEDALQEI  105 (119)
Q Consensus        79 ~~l~~~~~~~l~~~~~~~~~~~~~~~~  105 (119)
                      ..|..   +.+..|.+.+.....+...
T Consensus       316 ~~L~~---L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          316 CNLQF---LGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             TTCCC---EECTTSCCCSHHHHHHHHH
T ss_pred             CCccE---EeCCCCccCCCChHHHhhc
Confidence            65533   4677777777766665543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.29  E-value=4.6e-12  Score=97.80  Aligned_cols=78  Identities=17%  Similarity=0.074  Sum_probs=71.6

Q ss_pred             cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      +|..++.+++|++||+++|.++ .+|.+++.+++|+.|++++|.+.|.+|..   +.+|+.|++++|+..+.+|..+..+
T Consensus       624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l  703 (768)
T 3rgz_A          624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL  703 (768)
T ss_dssp             CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence            5778999999999999999999 99999999999999999999999999986   5789999999999999999988855


Q ss_pred             Cc
Q 046349           79 YE   80 (119)
Q Consensus        79 ~~   80 (119)
                      ..
T Consensus       704 ~~  705 (768)
T 3rgz_A          704 TM  705 (768)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.24  E-value=3.8e-11  Score=78.50  Aligned_cols=87  Identities=20%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             ccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCcee
Q 046349            7 LGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEID   82 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l~   82 (119)
                      ++.+++|++|++++|.++.+ |..+..+++|++|++++|++.+..|..   +.+|+.|++++|...+..|..+..+..|.
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            78899999999999999955 678999999999999999966555543   57899999999887777787777554443


Q ss_pred             ecCccCCCcccccc
Q 046349           83 LSCNFKLDRNEARG   96 (119)
Q Consensus        83 ~~~~~~l~~~~~~~   96 (119)
                      .   +.+..|...+
T Consensus       130 ~---L~L~~N~l~c  140 (192)
T 1w8a_A          130 S---LNLASNPFNC  140 (192)
T ss_dssp             E---EECTTCCBCC
T ss_pred             E---EEeCCCCccC
Confidence            2   2445555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.22  E-value=1.8e-11  Score=85.55  Aligned_cols=74  Identities=19%  Similarity=0.300  Sum_probs=39.1

Q ss_pred             cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      +|..++++++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..   +++|++|++++|...+.+|..++
T Consensus        93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  170 (313)
T 1ogq_A           93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG  170 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence            4455555555555555555555 55555555555555555555544444443   34455555555554445555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=4.7e-11  Score=89.83  Aligned_cols=91  Identities=21%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCcccc-CccccCc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTL-SGLIFSS   78 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~l-p~~~~~l   78 (119)
                      .+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|.+. .+|..  +++|+.|++++|...+.. |..++.+
T Consensus       455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l  532 (567)
T 1dce_A          455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSC  532 (567)
T ss_dssp             SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred             CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCcccCCCCCCcEEECCCCCCCCCCCcHHHhcC
Confidence            4676 99999999999999999999999999999999999999954 58843  578999999997766654 8888766


Q ss_pred             CceeecCccCCCcccccch
Q 046349           79 YEIDLSCNFKLDRNEARGI   97 (119)
Q Consensus        79 ~~l~~~~~~~l~~~~~~~~   97 (119)
                      +.|..   +.+..|...+.
T Consensus       533 ~~L~~---L~L~~N~l~~~  548 (567)
T 1dce_A          533 PRLVL---LNLQGNSLCQE  548 (567)
T ss_dssp             TTCCE---EECTTSGGGGS
T ss_pred             CCCCE---EEecCCcCCCC
Confidence            55433   24455555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.18  E-value=2.1e-11  Score=85.13  Aligned_cols=79  Identities=28%  Similarity=0.369  Sum_probs=69.7

Q ss_pred             CcChhccCCCCCCEEeccC-CCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            2 ELPESLGQLSTLEELFLVK-NNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~-n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      .+|..++++++|++|++++ |.+. .+|..++.+++|++|++++|.+.+.+|..   +.+|++|++++|...+.+|..+.
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence            4789999999999999995 8888 89999999999999999999987788875   57899999999888888998887


Q ss_pred             CcCc
Q 046349           77 SSYE   80 (119)
Q Consensus        77 ~l~~   80 (119)
                      .+..
T Consensus       147 ~l~~  150 (313)
T 1ogq_A          147 SLPN  150 (313)
T ss_dssp             GCTT
T ss_pred             cCCC
Confidence            5544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.18  E-value=1.8e-11  Score=76.68  Aligned_cols=92  Identities=21%  Similarity=0.150  Sum_probs=66.6

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccc-cCccccC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDT-LSGLIFS   77 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~-lp~~~~~   77 (119)
                      .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.+.+|..   +++|+.|++++|...+. .|..++.
T Consensus        33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~  111 (149)
T 2je0_A           33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK  111 (149)
T ss_dssp             BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG
T ss_pred             HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh
Confidence            4777788999999999999999877 77899999999999999966657764   67899999998765441 2355654


Q ss_pred             cCceeecCccCCCcccccch
Q 046349           78 SYEIDLSCNFKLDRNEARGI   97 (119)
Q Consensus        78 l~~l~~~~~~~l~~~~~~~~   97 (119)
                      ++.|..   +.+..+...++
T Consensus       112 l~~L~~---L~l~~N~l~~~  128 (149)
T 2je0_A          112 LENLKS---LDLFNCEVTNL  128 (149)
T ss_dssp             CTTCCE---EECTTCGGGGS
T ss_pred             CCCCCE---EeCcCCcccch
Confidence            443322   23444444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.17  E-value=5.9e-11  Score=90.04  Aligned_cols=55  Identities=18%  Similarity=0.282  Sum_probs=31.8

Q ss_pred             CChhhhcCCCCCEEeccCcccccc-----------------cCCCC-----CCCceeeccCCCCccccCccccCcCc
Q 046349           26 IPESIMQLSKLKFLNLSYSERLQS-----------------LLKLP-----CSLLELDAHHCTVLDTLSGLIFSSYE   80 (119)
Q Consensus        26 lP~~~~~l~~L~~L~l~~n~~~~~-----------------lp~~~-----~~L~~L~l~~~~~~~~lp~~~~~l~~   80 (119)
                      +|++++++++|++|++++|.+.+.                 +|..+     .+|++|++++|...+.+|..+++++.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  274 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE  274 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence            556666666666666666665443                 55542     34566666666666666665554433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.17  E-value=1.8e-10  Score=75.53  Aligned_cols=90  Identities=18%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc-ccc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG-LIF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~-~~~   76 (119)
                      .+|..+.++++|++|++++|.++.+++ .|..+++|+.|++++|++.+..|..   +.+|+.|++++|.. ..+|. .+.
T Consensus        45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~  123 (193)
T 2wfh_A           45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFN  123 (193)
T ss_dssp             SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTT
T ss_pred             hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhh
Confidence            467778888888888888888886654 6888888888888888854444433   46788888888654 45554 354


Q ss_pred             CcCceeecCccCCCccccc
Q 046349           77 SSYEIDLSCNFKLDRNEAR   95 (119)
Q Consensus        77 ~l~~l~~~~~~~l~~~~~~   95 (119)
                      .+..|..   +.+..|...
T Consensus       124 ~l~~L~~---L~L~~N~~~  139 (193)
T 2wfh_A          124 DLSALSH---LAIGANPLY  139 (193)
T ss_dssp             TCTTCCE---EECCSSCEE
T ss_pred             cCccccE---EEeCCCCee
Confidence            4433322   244455443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.17  E-value=1.7e-10  Score=76.98  Aligned_cols=87  Identities=16%  Similarity=0.086  Sum_probs=48.9

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCce
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEI   81 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l   81 (119)
                      .|+++++|++|++++|.++.+|+ .+..+++|++|++++|++.+..|..   +.+|+.|++++|...+..|..+..+..|
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  155 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL  155 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred             HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence            45666666666666666664443 3666666666666666644444443   3556677777655555445555544333


Q ss_pred             eecCccCCCccccc
Q 046349           82 DLSCNFKLDRNEAR   95 (119)
Q Consensus        82 ~~~~~~~l~~~~~~   95 (119)
                      ..   +.+..|...
T Consensus       156 ~~---L~L~~N~l~  166 (220)
T 2v70_A          156 ST---LNLLANPFN  166 (220)
T ss_dssp             CE---EECCSCCEE
T ss_pred             CE---EEecCcCCc
Confidence            22   244445444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.15  E-value=2.2e-10  Score=75.07  Aligned_cols=78  Identities=18%  Similarity=0.185  Sum_probs=61.0

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      ++|..+.  ++|++|++++|.++.+|..+..+++|+.|++++|.+.+..|..   +.+|+.|++++|...+..|..+..+
T Consensus        24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l  101 (193)
T 2wfh_A           24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL  101 (193)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence            4676553  6899999999999999999999999999999999955444443   5789999999976655555566654


Q ss_pred             Cce
Q 046349           79 YEI   81 (119)
Q Consensus        79 ~~l   81 (119)
                      ..|
T Consensus       102 ~~L  104 (193)
T 2wfh_A          102 KSL  104 (193)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.15  E-value=2.1e-10  Score=73.73  Aligned_cols=87  Identities=17%  Similarity=0.206  Sum_probs=63.1

Q ss_pred             CcChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCc-cc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG-LI   75 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~-~~   75 (119)
                      ++|..+.  ++|++|++++|.++.+ |..+..+++|++|++++|++. .+|..    +.+|+.|++++|... .+|. .+
T Consensus        23 ~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~   98 (170)
T 3g39_A           23 SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAF   98 (170)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCCccC-EeCHHHh
Confidence            4676663  8899999999999966 567999999999999999954 55542    578999999997554 4554 46


Q ss_pred             cCcCceeecCccCCCccccc
Q 046349           76 FSSYEIDLSCNFKLDRNEAR   95 (119)
Q Consensus        76 ~~l~~l~~~~~~~l~~~~~~   95 (119)
                      ..+..|..   +.+..|...
T Consensus        99 ~~l~~L~~---L~L~~N~~~  115 (170)
T 3g39_A           99 DNLKSLTH---IWLLNNPWD  115 (170)
T ss_dssp             TTCTTCCE---EECCSSCBC
T ss_pred             cCCCCCCE---EEeCCCCCC
Confidence            65544432   244555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.14  E-value=4.7e-11  Score=90.57  Aligned_cols=75  Identities=13%  Similarity=0.192  Sum_probs=62.6

Q ss_pred             cChhccCCCCCCEEeccCCCCcc------------------CChhhh--cCCCCCEEeccCcccccccCCC---CCCCce
Q 046349            3 LPESLGQLSTLEELFLVKNNFVR------------------IPESIM--QLSKLKFLNLSYSERLQSLLKL---PCSLLE   59 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~------------------lP~~~~--~l~~L~~L~l~~n~~~~~lp~~---~~~L~~   59 (119)
                      +|.+++++++|++|++++|.++.                  +|+.++  ++++|++|++++|.+.+.+|..   +++|+.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            78888999999999999999886                  898888  9999999999999888888875   467888


Q ss_pred             eeccCCC-Ccc-ccCccccC
Q 046349           60 LDAHHCT-VLD-TLSGLIFS   77 (119)
Q Consensus        60 L~l~~~~-~~~-~lp~~~~~   77 (119)
                      |++++|. ..+ .+|..++.
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~  297 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQA  297 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHH
T ss_pred             EECcCCCCCccccchHHHHh
Confidence            9999887 666 78876643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.13  E-value=1.9e-11  Score=81.57  Aligned_cols=75  Identities=15%  Similarity=0.059  Sum_probs=58.5

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYE   80 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~   80 (119)
                      .++.+++|++|++++|.++.+++ .+..+++|++|++++|.+.+..|..   +.+|++|++++|...+..|..+..+..
T Consensus        52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  130 (220)
T 2v70_A           52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS  130 (220)
T ss_dssp             CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred             hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence            37889999999999999996665 7899999999999999865444443   578999999997776666777765444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.13  E-value=2.2e-10  Score=76.42  Aligned_cols=39  Identities=21%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             ccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcc
Q 046349            7 LGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~   45 (119)
                      +..+++|++|++++|.++.+ |..|.++++|++|++++|+
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            44455555555555555522 4445555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=2.9e-10  Score=73.39  Aligned_cols=76  Identities=16%  Similarity=0.261  Sum_probs=58.9

Q ss_pred             CcChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCcc-c
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGL-I   75 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~-~   75 (119)
                      ++|..+.  ++|++|++++|.++.+ |..+..+++|++|++++|+ +..+|..    +.+|+.|++++|.. ..+|.. +
T Consensus        26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~  101 (174)
T 2r9u_A           26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAF  101 (174)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTT
T ss_pred             ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCcc-ceeCHHHh
Confidence            5777664  8899999999999966 5689999999999999999 4556653    57899999998654 456654 6


Q ss_pred             cCcCce
Q 046349           76 FSSYEI   81 (119)
Q Consensus        76 ~~l~~l   81 (119)
                      ..+..|
T Consensus       102 ~~l~~L  107 (174)
T 2r9u_A          102 DNLKSL  107 (174)
T ss_dssp             TTCTTC
T ss_pred             ccccCC
Confidence            544443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.13  E-value=2.8e-10  Score=75.89  Aligned_cols=89  Identities=20%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             ChhccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcC
Q 046349            4 PESLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSY   79 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~   79 (119)
                      |..|.++++|++|++++|.++.+|+. +..+++|+.|++++|++.+..|..   +++|+.|++++|...+..+..+..+.
T Consensus        73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  152 (220)
T 2v9t_B           73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR  152 (220)
T ss_dssp             TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence            67899999999999999999988875 689999999999999966555554   47899999999765554444566444


Q ss_pred             ceeecCccCCCccccc
Q 046349           80 EIDLSCNFKLDRNEAR   95 (119)
Q Consensus        80 ~l~~~~~~~l~~~~~~   95 (119)
                      .|..   +.+..|...
T Consensus       153 ~L~~---L~L~~N~~~  165 (220)
T 2v9t_B          153 AIQT---MHLAQNPFI  165 (220)
T ss_dssp             TCCE---EECCSSCEE
T ss_pred             CCCE---EEeCCCCcC
Confidence            4322   244455544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.11  E-value=3.2e-10  Score=74.11  Aligned_cols=77  Identities=18%  Similarity=0.215  Sum_probs=61.3

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChh--hhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPES--IMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~--~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      ++|..+..  ++++|++++|.+..+|+.  ++.+++|++|++++|.+.+..|..   +.+|+.|++++|...+..|..+.
T Consensus        22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   99 (192)
T 1w8a_A           22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL   99 (192)
T ss_dssp             SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred             cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc
Confidence            56766544  899999999999987763  999999999999999977666765   47899999999876666665565


Q ss_pred             CcCc
Q 046349           77 SSYE   80 (119)
Q Consensus        77 ~l~~   80 (119)
                      .+..
T Consensus       100 ~l~~  103 (192)
T 1w8a_A          100 GLHQ  103 (192)
T ss_dssp             TCTT
T ss_pred             CCCC
Confidence            4444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=3.1e-10  Score=79.87  Aligned_cols=73  Identities=19%  Similarity=0.194  Sum_probs=60.5

Q ss_pred             CcChhccCCCCCCEEeccC-CCCccCC-hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            2 ELPESLGQLSTLEELFLVK-NNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~-n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      .+|. ++.+++|+.|+|++ |.++.+| ..|+.+++|+.|+|++|++.+..|..   +++|+.|++++|. +..+|..+.
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~  100 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV  100 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTT
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHc
Confidence            5888 99999999999996 9999777 57999999999999999966666654   6789999999965 456666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.08  E-value=5.1e-10  Score=74.96  Aligned_cols=71  Identities=27%  Similarity=0.283  Sum_probs=39.6

Q ss_pred             ChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCCccccCcccc
Q 046349            4 PESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      |..++++++|++|++++|.+..+|. .+..+++|+.|++++|++. .+|. .   +.+|+.|++++|. +..+|..+.
T Consensus        57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~  132 (229)
T 3e6j_A           57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNK-LTELPRGIE  132 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCSCCTTGG
T ss_pred             HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCc-ccccCcccc
Confidence            4445666666666666666665554 3466666666666666633 3332 1   3456666666543 335554443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.08  E-value=1.9e-10  Score=86.04  Aligned_cols=78  Identities=18%  Similarity=0.137  Sum_probs=44.4

Q ss_pred             ChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCcc-ccCccccCc
Q 046349            4 PESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLD-TLSGLIFSS   78 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~-~lp~~~~~l   78 (119)
                      |..|+++++|++|++++|.++.+ |.+|+++++|++|++++|.+.+..|..   +.+|++|++++|...+ .+|..++++
T Consensus        73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l  152 (606)
T 3vq2_A           73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL  152 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC
T ss_pred             HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhc
Confidence            34456666666666666666643 555666666666666666633222222   3556777777665543 567666654


Q ss_pred             Cce
Q 046349           79 YEI   81 (119)
Q Consensus        79 ~~l   81 (119)
                      +.|
T Consensus       153 ~~L  155 (606)
T 3vq2_A          153 TNL  155 (606)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.08  E-value=2.8e-10  Score=84.87  Aligned_cols=61  Identities=28%  Similarity=0.208  Sum_probs=37.9

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTV   67 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~   67 (119)
                      +|+++++|++|++++|.|+.+|+ +|.++++|++|++++|+ +..+|..    +.+|++|++++|+.
T Consensus        71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~l  136 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNL  136 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSCC
T ss_pred             HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCcC
Confidence            46667777777777777765544 56667777777777776 3344432    35566666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.07  E-value=1e-10  Score=90.11  Aligned_cols=74  Identities=22%  Similarity=0.281  Sum_probs=66.4

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      .+|.+|+++++|++|+|++|.|+.+|..++.+++|++|++++|. ++.+|..   +.+|+.|++++|.+.+.+|..+.
T Consensus       261 ~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          261 ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            58999999999999999999999999999999999999999998 6788886   46899999999888877776664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=1.3e-10  Score=91.19  Aligned_cols=74  Identities=15%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             cChhccCCCCCCEEeccCCCCcc------------------CChhhh--cCCCCCEEeccCcccccccCCC---CCCCce
Q 046349            3 LPESLGQLSTLEELFLVKNNFVR------------------IPESIM--QLSKLKFLNLSYSERLQSLLKL---PCSLLE   59 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~------------------lP~~~~--~l~~L~~L~l~~n~~~~~lp~~---~~~L~~   59 (119)
                      +|.+++++++|++|++++|.++.                  +|+.++  ++++|++|++++|.+.+.+|..   +++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            78888888888888888888886                  888776  8888888888888878888865   467888


Q ss_pred             eeccCCC-Ccc-ccCcccc
Q 046349           60 LDAHHCT-VLD-TLSGLIF   76 (119)
Q Consensus        60 L~l~~~~-~~~-~lp~~~~   76 (119)
                      |++++|. ..+ .+|..++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~  538 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWT  538 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHH
T ss_pred             EECcCCCCcccccchHHHH
Confidence            8888876 555 6776555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.05  E-value=3.4e-09  Score=68.00  Aligned_cols=92  Identities=20%  Similarity=0.192  Sum_probs=61.7

Q ss_pred             cCh-hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcc-cc
Q 046349            3 LPE-SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGL-IF   76 (119)
Q Consensus         3 lP~-~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~-~~   76 (119)
                      +|. .++.+++|++|++++|.++.+|+ .+..+++|+.|++++|.+.+..+..   +.+|+.|++++|.. ..+|.. +.
T Consensus        43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~  121 (177)
T 2o6r_A           43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFD  121 (177)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTT
T ss_pred             eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhc
Confidence            344 46788999999999999987775 4688999999999999855443332   46789999998654 456654 34


Q ss_pred             CcCceeecCccCCCcccccchH
Q 046349           77 SSYEIDLSCNFKLDRNEARGIV   98 (119)
Q Consensus        77 ~l~~l~~~~~~~l~~~~~~~~~   98 (119)
                      .+..|..   +.+..|...+..
T Consensus       122 ~l~~L~~---L~l~~N~~~~~~  140 (177)
T 2o6r_A          122 RLTSLQK---IWLHTNPWDCSC  140 (177)
T ss_dssp             TCTTCCE---EECCSSCBCCCH
T ss_pred             CCcccCE---EEecCCCeeccC
Confidence            3433322   245555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.04  E-value=6.3e-11  Score=75.55  Aligned_cols=65  Identities=23%  Similarity=0.257  Sum_probs=44.3

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTV   67 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~   67 (119)
                      .+|..++.+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..   +++|+.|++++|..
T Consensus        40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  107 (168)
T 2ell_A           40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL  107 (168)
T ss_dssp             BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC
T ss_pred             hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc
Confidence            3566667777777777777777755 56777777777777777755545553   46677777777543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.03  E-value=7.3e-10  Score=82.62  Aligned_cols=76  Identities=22%  Similarity=0.196  Sum_probs=62.2

Q ss_pred             cChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      +|..++.+++|++|++++|.++.+ |..|+++++|+.|++++|++.+..|..   +++|+.|++++|...+..|..+..+
T Consensus       486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  565 (635)
T 4g8a_A          486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  565 (635)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred             CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence            467789999999999999999954 668999999999999999955444443   5789999999988777777777644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.02  E-value=4.1e-10  Score=77.24  Aligned_cols=70  Identities=23%  Similarity=0.220  Sum_probs=32.1

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCcccc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      .++++++|++|++++|.++.+|. .++.+++|+.|++++|++ ..+|..    +.+|+.|++++|...+..|..+.
T Consensus       124 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  198 (285)
T 1ozn_A          124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence            34445555555555555554433 244555555555555542 223221    23455555555444333344443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.01  E-value=1.6e-09  Score=72.56  Aligned_cols=78  Identities=21%  Similarity=0.215  Sum_probs=61.0

Q ss_pred             CcChh-ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc-cc
Q 046349            2 ELPES-LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG-LI   75 (119)
Q Consensus         2 ~lP~~-~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~-~~   75 (119)
                      .+|.. ++++++|++|++++|.++.+|+ .+..+++|+.|++++|+ +..+|..   +.+|+.|++++|... .+|. .+
T Consensus        78 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~  155 (229)
T 3e6j_A           78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLK-SIPHGAF  155 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTT
T ss_pred             CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCC-ccCHHHH
Confidence            35544 6899999999999999998776 47899999999999999 5588875   578999999997554 5553 45


Q ss_pred             cCcCce
Q 046349           76 FSSYEI   81 (119)
Q Consensus        76 ~~l~~l   81 (119)
                      ..+..|
T Consensus       156 ~~l~~L  161 (229)
T 3e6j_A          156 DRLSSL  161 (229)
T ss_dssp             TTCTTC
T ss_pred             hCCCCC
Confidence            544443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.00  E-value=2.4e-10  Score=77.35  Aligned_cols=40  Identities=23%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~   45 (119)
                      .++++++|++|++++|.++.+++ .+..+++|++|++++|+
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            34555555555555555553332 34555555555555555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.00  E-value=9.2e-10  Score=71.98  Aligned_cols=67  Identities=19%  Similarity=0.234  Sum_probs=35.4

Q ss_pred             hccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccC
Q 046349            6 SLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLS   72 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp   72 (119)
                      .++.+++|++|++++|.++ ..|..++.+++|++|++++|.+.+..|..   +++|+.|++++|..++.+|
T Consensus        83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence            4555555555555555555 34555555555556666555544333332   3455566666554344444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.00  E-value=1.6e-10  Score=83.70  Aligned_cols=61  Identities=26%  Similarity=0.187  Sum_probs=28.1

Q ss_pred             hccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCT   66 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~   66 (119)
                      .++++++|++|++++|.+..+ |..++.+++|+.|++++|++.+..|..   +++|++|++++|.
T Consensus       318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            344444555555555544422 334444555555555555433333332   2445555555543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=2.1e-09  Score=84.42  Aligned_cols=84  Identities=19%  Similarity=0.242  Sum_probs=64.1

Q ss_pred             CcChhcc--CCCCCCEEeccCCCCccCChhhhcCCCCCEEeccC------cccccccCCC---CCCCceeeccCCCCccc
Q 046349            2 ELPESLG--QLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSY------SERLQSLLKL---PCSLLELDAHHCTVLDT   70 (119)
Q Consensus         2 ~lP~~~~--~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~------n~~~~~lp~~---~~~L~~L~l~~~~~~~~   70 (119)
                      .+|..+.  .+++|+.|++++|.++.+|..+..+++|+.|++++      |.+.+.+|..   +++|+.|++++|.. +.
T Consensus       742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~  820 (876)
T 4ecn_A          742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK  820 (876)
T ss_dssp             CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred             cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Cc
Confidence            4677776  88888888888888888888888888888888866      6667777765   46788888888765 78


Q ss_pred             cCcccc-CcCceeecCc
Q 046349           71 LSGLIF-SSYEIDLSCN   86 (119)
Q Consensus        71 lp~~~~-~l~~l~~~~~   86 (119)
                      +|..+. +++.|++.+|
T Consensus       821 Ip~~l~~~L~~LdLs~N  837 (876)
T 4ecn_A          821 VDEKLTPQLYILDIADN  837 (876)
T ss_dssp             CCSCCCSSSCEEECCSC
T ss_pred             cCHhhcCCCCEEECCCC
Confidence            887654 4555666555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.99  E-value=1.4e-09  Score=81.87  Aligned_cols=71  Identities=24%  Similarity=0.282  Sum_probs=60.6

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCccccccc-CCC---CCCCceeeccCCCCccccCcc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSL-LKL---PCSLLELDAHHCTVLDTLSGL   74 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~l-p~~---~~~L~~L~l~~~~~~~~lp~~   74 (119)
                      ++|..++++++|+.|++++|.++.+| .++.+++|+.|++++|++.+.. |..   +++|+.|++++|...+ +|+.
T Consensus       477 ~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~  551 (567)
T 1dce_A          477 ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGI  551 (567)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-SSSC
T ss_pred             ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-CccH
Confidence            58999999999999999999999998 8999999999999999966554 765   5789999999976544 4443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.98  E-value=3.3e-10  Score=76.63  Aligned_cols=60  Identities=25%  Similarity=0.351  Sum_probs=27.9

Q ss_pred             ccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCC
Q 046349            7 LGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTV   67 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~   67 (119)
                      ++.+++|++|++++|.++.+|+. +..+++|+.|++++|++. .+|. .   +.+|+.|++++|..
T Consensus       103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A          103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcC
Confidence            34445555555555555544432 344555555555555422 2222 1   24455555555433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.98  E-value=2.4e-09  Score=74.14  Aligned_cols=63  Identities=24%  Similarity=0.172  Sum_probs=36.3

Q ss_pred             cChhccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCC
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCT   66 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~   66 (119)
                      +|..+.++++|++|++++|.++.+| ..+..+++|+.|++++|++. .+|..    +++|+.|++++|.
T Consensus        92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred             CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCc
Confidence            4555566666666666666666554 34666666666666666633 33331    3456666666543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.96  E-value=2.5e-09  Score=69.92  Aligned_cols=69  Identities=22%  Similarity=0.236  Sum_probs=59.0

Q ss_pred             cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccC
Q 046349            3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLS   72 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp   72 (119)
                      .|..++.+++|++|++++|.++ ..|..++.+++|++|++++|...+.+|..  +++|+.|++++|... .++
T Consensus       104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~-~~~  175 (197)
T 4ezg_A          104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH-DYR  175 (197)
T ss_dssp             GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC-CCT
T ss_pred             cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc-ChH
Confidence            4778899999999999999999 57889999999999999999867777753  678999999997644 454

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.96  E-value=4.3e-10  Score=76.93  Aligned_cols=38  Identities=32%  Similarity=0.515  Sum_probs=15.4

Q ss_pred             cCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcc
Q 046349            8 GQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~   45 (119)
                      +++++|++|++++|.++.+|+ .++.+++|+.|++++|+
T Consensus       130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  168 (272)
T 3rfs_A          130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ  168 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence            334444444444444443332 23344444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.95  E-value=4.2e-09  Score=69.16  Aligned_cols=39  Identities=31%  Similarity=0.600  Sum_probs=19.2

Q ss_pred             ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~   45 (119)
                      ++++++|++|++++|.++.+|. .+..+++|++|++++|+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            3445555555555555554443 23445555555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.95  E-value=1.2e-09  Score=80.48  Aligned_cols=75  Identities=17%  Similarity=0.143  Sum_probs=58.8

Q ss_pred             hhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCcc-ccCccccCcCc
Q 046349            5 ESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLD-TLSGLIFSSYE   80 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~-~lp~~~~~l~~   80 (119)
                      ..++++++|++|++++|.++.+ |..++++++|++|++++|+ +..+|.. +.+|++|++++|...+ .+|..++.++.
T Consensus        39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~  116 (520)
T 2z7x_B           39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ  116 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred             hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCccccCCccEEeccCCccccccchhhhccCCc
Confidence            5688899999999999998854 6788999999999999998 4467764 6788999999877665 56777764443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.95  E-value=4.4e-09  Score=69.05  Aligned_cols=83  Identities=22%  Similarity=0.210  Sum_probs=56.5

Q ss_pred             cChh-ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc-ccc
Q 046349            3 LPES-LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG-LIF   76 (119)
Q Consensus         3 lP~~-~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~-~~~   76 (119)
                      +|.. +..+++|++|++++|.++.+|+ .+..+++|++|++++|++.+..+..   +++|+.|++++|... .+|. .+.
T Consensus        67 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~  145 (208)
T 2o6s_A           67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD  145 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTT
T ss_pred             cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhc
Confidence            4443 5788899999999999887775 4688899999999999854433332   467889999886554 4444 344


Q ss_pred             Cc---CceeecCc
Q 046349           77 SS---YEIDLSCN   86 (119)
Q Consensus        77 ~l---~~l~~~~~   86 (119)
                      .+   +.+++.++
T Consensus       146 ~l~~L~~L~l~~N  158 (208)
T 2o6s_A          146 RLTSLQYIWLHDN  158 (208)
T ss_dssp             TCTTCCEEECCSC
T ss_pred             cCCCccEEEecCC
Confidence            33   34444433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.94  E-value=1.8e-09  Score=73.67  Aligned_cols=72  Identities=21%  Similarity=0.120  Sum_probs=31.7

Q ss_pred             ccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCcc-ccCccccCc
Q 046349            7 LGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLD-TLSGLIFSS   78 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~-~lp~~~~~l   78 (119)
                      ++++++|++|++++|.++.++ ..+.++++|++|++++|.+.+..+..   +.+|+.|++++|...+ .+|..+..+
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l  148 (276)
T 2z62_A           72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL  148 (276)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred             ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence            444444444444444444222 33444444444444444422211111   3456666666654433 245555533

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.93  E-value=2.6e-09  Score=78.67  Aligned_cols=49  Identities=29%  Similarity=0.323  Sum_probs=25.2

Q ss_pred             cChhccCCCCCCEEeccCCCCcc---CChhhhcCCCCCEEeccCcccccccC
Q 046349            3 LPESLGQLSTLEELFLVKNNFVR---IPESIMQLSKLKFLNLSYSERLQSLL   51 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~---lP~~~~~l~~L~~L~l~~n~~~~~lp   51 (119)
                      +|..++++++|++|++++|.++.   +|..++.+++|++|++++|.+.+.+|
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~  391 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK  391 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence            34455555555555555555552   33345555555555555555433344

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.92  E-value=3.5e-09  Score=68.25  Aligned_cols=64  Identities=22%  Similarity=0.285  Sum_probs=54.4

Q ss_pred             ChhccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCc
Q 046349            4 PESLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVL   68 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~   68 (119)
                      |..|+++++|++|++++|.++.+|+. +..+++|+.|++++|++ ..+|..    +.+|+.|++++|...
T Consensus        50 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEEEeCCCCcc
Confidence            56789999999999999999988875 68999999999999994 456553    578999999997543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.92  E-value=1.2e-09  Score=77.08  Aligned_cols=74  Identities=26%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             ChhccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCC--C---CCCCceeeccCCCCccccC-cccc
Q 046349            4 PESLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLK--L---PCSLLELDAHHCTVLDTLS-GLIF   76 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~--~---~~~L~~L~l~~~~~~~~lp-~~~~   76 (119)
                      |..++++++|++|++++|.++.+|.. ++++++|++|++++|+ +..+|.  .   +++|+.|++++|+..+.++ ..+.
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  171 (353)
T 2z80_A           93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA  171 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred             HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence            45578888888888888888877765 7888888888888887 445665  2   4678888888775555553 3444


Q ss_pred             Cc
Q 046349           77 SS   78 (119)
Q Consensus        77 ~l   78 (119)
                      .+
T Consensus       172 ~l  173 (353)
T 2z80_A          172 GL  173 (353)
T ss_dssp             TC
T ss_pred             CC
Confidence            33

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.92  E-value=1.8e-09  Score=79.96  Aligned_cols=74  Identities=24%  Similarity=0.237  Sum_probs=39.3

Q ss_pred             hccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCcc-ccCccccCcC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLD-TLSGLIFSSY   79 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~-~lp~~~~~l~   79 (119)
                      .|+++++|++|++++|.++.+| ..|+++++|++|++++|. +..+|..    +.+|++|++++|...+ .+|..+++++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  149 (570)
T 2z63_A           71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  149 (570)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             cccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccC
Confidence            3455555555555555555333 345555555555555555 3333321    3566777777655444 4566665443


Q ss_pred             c
Q 046349           80 E   80 (119)
Q Consensus        80 ~   80 (119)
                      .
T Consensus       150 ~  150 (570)
T 2z63_A          150 N  150 (570)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.91  E-value=1e-09  Score=80.17  Aligned_cols=72  Identities=22%  Similarity=0.251  Sum_probs=43.1

Q ss_pred             ChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCcccc
Q 046349            4 PESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      |..|.++++|++|++++|.++.+ |..+.++++|++|++++|+ +..+|..    +++|+.|++++|...+..|..+.
T Consensus        49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  125 (477)
T 2id5_A           49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ  125 (477)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHcc
Confidence            34566677777777777776633 5567777777777777776 3344432    35566666666554444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.91  E-value=3.3e-09  Score=79.03  Aligned_cols=74  Identities=20%  Similarity=0.134  Sum_probs=55.9

Q ss_pred             hhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCcc-ccCccccCcC
Q 046349            5 ESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLD-TLSGLIFSSY   79 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~-~lp~~~~~l~   79 (119)
                      ..++++++|++|++++|.++.+ |..+.++++|++|++++|+ +..+|.. +.+|++|++++|...+ .+|..++.+.
T Consensus        70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~  146 (562)
T 3a79_B           70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT  146 (562)
T ss_dssp             GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred             hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEECCCCCccccCchHhhcccC
Confidence            5788888899999998888855 6678888899999999888 4567764 6778889998876544 3456665443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.91  E-value=2.2e-09  Score=74.72  Aligned_cols=68  Identities=21%  Similarity=0.165  Sum_probs=45.4

Q ss_pred             cChhc--cCCCCCCEEeccCCCCccCChhhhcC-----CCCCEEeccCcccccccCCC---CCCCceeeccCCCCccc
Q 046349            3 LPESL--GQLSTLEELFLVKNNFVRIPESIMQL-----SKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDT   70 (119)
Q Consensus         3 lP~~~--~~l~~L~~L~ls~n~l~~lP~~~~~l-----~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~   70 (119)
                      +|..+  +.+++|++|++++|.++.+|..++.+     ++|++|++++|++.+..|..   +++|+.|++++|...+.
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence            45554  67777777777777777667666666     77777777777744444343   45677777777665544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.91  E-value=5.3e-09  Score=75.68  Aligned_cols=77  Identities=21%  Similarity=0.130  Sum_probs=62.6

Q ss_pred             cChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      +|..++.+++|++|++++|.+..+ |..++.+++|+.|++++|.+.+..|..   +++|+.|++++|...+..|..+..+
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  370 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL  370 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence            467789999999999999999954 668999999999999999965554554   5789999999987766667666644


Q ss_pred             C
Q 046349           79 Y   79 (119)
Q Consensus        79 ~   79 (119)
                      .
T Consensus       371 ~  371 (455)
T 3v47_A          371 P  371 (455)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.91  E-value=3.3e-09  Score=80.37  Aligned_cols=70  Identities=20%  Similarity=0.165  Sum_probs=32.0

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLI   75 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~   75 (119)
                      .++++++|++|++++|.++.+|+ .|+++++|++|++++|++.+..|..   +.+|++|++++|...+..|..+
T Consensus        68 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  141 (680)
T 1ziw_A           68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ  141 (680)
T ss_dssp             HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS
T ss_pred             HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh
Confidence            34445555555555555554443 3455555555555555432222222   2445555555544444444433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.91  E-value=4.2e-09  Score=72.89  Aligned_cols=65  Identities=26%  Similarity=0.232  Sum_probs=43.6

Q ss_pred             cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc
Q 046349            8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~   73 (119)
                      +.+++|++|++++|.++.+|..+..+++|++|++++|++.+..|..   +.+|+.|++++|... .+|.
T Consensus        74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~  141 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP  141 (290)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCT
T ss_pred             CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccCh
Confidence            4566677777777777777777777888888888888744333332   457888888876544 4443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.90  E-value=5.1e-09  Score=72.36  Aligned_cols=76  Identities=22%  Similarity=0.196  Sum_probs=54.8

Q ss_pred             cChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      +|..++.+++|++|++++|.++.+ |..+..+++|+.|++++|++.+..+..   +++|+.|++++|...+..|..+..+
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            566778888888888888888854 567888888888888888744333322   4678888888887777677666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.90  E-value=4.6e-09  Score=78.55  Aligned_cols=66  Identities=15%  Similarity=0.083  Sum_probs=43.4

Q ss_pred             ChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCcc
Q 046349            4 PESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLD   69 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~   69 (119)
                      |..|+++++|++|++++|.+. ..|.+|+++++|++|++++|++.+..|..   +.+|++|++++|...+
T Consensus        50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS  119 (606)
T ss_dssp             TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred             hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence            456777777777777777777 34566777777777777777755554543   3556667766654433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.90  E-value=2.3e-09  Score=68.85  Aligned_cols=59  Identities=17%  Similarity=0.147  Sum_probs=32.8

Q ss_pred             CCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCc
Q 046349           12 TLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus        12 ~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~   73 (119)
                      +|++|++++|.++.+ +.+..+++|++|++++|.+ ..+|..    +++|+.|++++|. ++.+|.
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~  105 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELILTNNS-LVELGD  105 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEECCSCC-CCCGGG
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCCEEECCCCc-CCcchh
Confidence            566666666666654 3556666666666666663 334432    3556666666543 344554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.90  E-value=1.7e-09  Score=67.56  Aligned_cols=75  Identities=24%  Similarity=0.240  Sum_probs=58.3

Q ss_pred             hhccCCCCCCEEeccCCCCcc-CChhhhcCCCCCEEeccCcccccccC--CC---CCCCceeeccCCCCccccCc----c
Q 046349            5 ESLGQLSTLEELFLVKNNFVR-IPESIMQLSKLKFLNLSYSERLQSLL--KL---PCSLLELDAHHCTVLDTLSG----L   74 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~-lP~~~~~l~~L~~L~l~~n~~~~~lp--~~---~~~L~~L~l~~~~~~~~lp~----~   74 (119)
                      ..++.+++|++|++++|.++. +|..++.+++|++|++++|++. .+|  ..   +++|+.|++++|... .+|.    .
T Consensus        58 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~  135 (149)
T 2je0_A           58 ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENV  135 (149)
T ss_dssp             TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC-SHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHH
T ss_pred             hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC-ChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHH
Confidence            467889999999999999996 8888889999999999999954 443  33   578999999997554 4443    4


Q ss_pred             ccCcCce
Q 046349           75 IFSSYEI   81 (119)
Q Consensus        75 ~~~l~~l   81 (119)
                      +..++.|
T Consensus       136 ~~~l~~L  142 (149)
T 2je0_A          136 FKLLPQL  142 (149)
T ss_dssp             HHHCTTC
T ss_pred             HHHCCCc
Confidence            5444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.90  E-value=2.4e-09  Score=80.15  Aligned_cols=72  Identities=22%  Similarity=0.165  Sum_probs=37.4

Q ss_pred             ChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            4 PESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      |..++.+++|++|++++|.++ ..|..++.+++|+.|++++|++.+..|..   +++|+.|++++|. +..+|..+.
T Consensus       466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~  541 (606)
T 3vq2_A          466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQ  541 (606)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGG
T ss_pred             HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHh
Confidence            444555555555555555555 33344555555555555555544444443   2445556665543 334555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.89  E-value=8.5e-09  Score=70.47  Aligned_cols=81  Identities=23%  Similarity=0.314  Sum_probs=58.6

Q ss_pred             hhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc---C
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF---S   77 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~---~   77 (119)
                      ..++++++|++|++++|.++.+|+ .++.+++|++|++++|.+.+..|..   +++|+.|++++|...+..|..+.   +
T Consensus       103 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  182 (272)
T 3rfs_A          103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ  182 (272)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence            347899999999999999997765 5799999999999999855444432   46789999998765543333333   3


Q ss_pred             cCceeecC
Q 046349           78 SYEIDLSC   85 (119)
Q Consensus        78 l~~l~~~~   85 (119)
                      ++.|++.+
T Consensus       183 L~~L~L~~  190 (272)
T 3rfs_A          183 LKDLRLYQ  190 (272)
T ss_dssp             CCEEECCS
T ss_pred             CCEEECCC
Confidence            34444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.89  E-value=5.9e-09  Score=66.88  Aligned_cols=65  Identities=22%  Similarity=0.196  Sum_probs=54.5

Q ss_pred             ChhccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCCcc
Q 046349            4 PESLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTVLD   69 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~~~   69 (119)
                      |..|+++++|++|++++|.++.+|+. +..+++|++|++++|++. .+|. .   +.+|+.|++++|....
T Consensus        47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            56789999999999999999988874 689999999999999954 5554 3   5789999999976543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.89  E-value=4.1e-09  Score=74.83  Aligned_cols=66  Identities=17%  Similarity=0.104  Sum_probs=31.7

Q ss_pred             ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~   73 (119)
                      |.++++|++|++++|.++.+|+ .+..+++|+.|++++|++.+..|..   +.+|+.|++++|. +..+|.
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~  153 (361)
T 2xot_A           84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPV  153 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCG
T ss_pred             ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCH
Confidence            4555555555555555554333 3455555555555555533222322   3455556665532 333443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.88  E-value=4.9e-09  Score=66.68  Aligned_cols=75  Identities=25%  Similarity=0.309  Sum_probs=58.7

Q ss_pred             hhccCCCCCCEEeccCCCCcc-CChhhhcCCCCCEEeccCcccccccC--CC---CCCCceeeccCCCCccccCc----c
Q 046349            5 ESLGQLSTLEELFLVKNNFVR-IPESIMQLSKLKFLNLSYSERLQSLL--KL---PCSLLELDAHHCTVLDTLSG----L   74 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~-lP~~~~~l~~L~~L~l~~n~~~~~lp--~~---~~~L~~L~l~~~~~~~~lp~----~   74 (119)
                      ..++.+++|++|++++|.+.. +|..+..+++|++|++++|. +..+|  ..   +++|+.|++++|... .+|.    .
T Consensus        65 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~  142 (168)
T 2ell_A           65 SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESV  142 (168)
T ss_dssp             SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHH
T ss_pred             hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHH
Confidence            467889999999999999995 88888889999999999998 45554  22   578999999997554 4554    5


Q ss_pred             ccCcCce
Q 046349           75 IFSSYEI   81 (119)
Q Consensus        75 ~~~l~~l   81 (119)
                      +..++.|
T Consensus       143 ~~~l~~L  149 (168)
T 2ell_A          143 FKLLPQL  149 (168)
T ss_dssp             HTTCSSC
T ss_pred             HHhCccC
Confidence            5544443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.87  E-value=9.8e-09  Score=70.35  Aligned_cols=16  Identities=25%  Similarity=0.322  Sum_probs=6.1

Q ss_pred             hhcCCCCCEEeccCcc
Q 046349           30 IMQLSKLKFLNLSYSE   45 (119)
Q Consensus        30 ~~~l~~L~~L~l~~n~   45 (119)
                      +..+++|++|++++|.
T Consensus       101 ~~~l~~L~~L~l~~n~  116 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCG  116 (285)
T ss_dssp             TTTCTTCCEEECTTSC
T ss_pred             hcCCcCCCEEECCCCc
Confidence            3333333333333333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.87  E-value=1e-08  Score=69.93  Aligned_cols=61  Identities=23%  Similarity=0.336  Sum_probs=34.6

Q ss_pred             hccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTV   67 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~   67 (119)
                      .++++++|++|++++|.++.+|.. +..+++|++|++++|.+ ..+|. .   +.+|+.|++++|..
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l  121 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQL  121 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSCC
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCcc
Confidence            456666666666666666655543 35566666666666663 33332 1   34556666655443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.86  E-value=1.5e-08  Score=64.95  Aligned_cols=82  Identities=24%  Similarity=0.272  Sum_probs=59.2

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCCccccCcccc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      ++|..+  .++|+.|++++|.++.+|+ .+..+++|++|++++|.+. .+|. .   +.+|+.|++++|...+..+..+.
T Consensus        21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~   97 (177)
T 2o6r_A           21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFD   97 (177)
T ss_dssp             SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCCccccCHHHhh
Confidence            456444  3789999999999997776 5799999999999999954 5554 2   57899999999765544343444


Q ss_pred             ---CcCceeecCc
Q 046349           77 ---SSYEIDLSCN   86 (119)
Q Consensus        77 ---~l~~l~~~~~   86 (119)
                         +++.+++.++
T Consensus        98 ~l~~L~~L~l~~N  110 (177)
T 2o6r_A           98 KLTQLKELALDTN  110 (177)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             CCcccCEEECcCC
Confidence               4444555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.86  E-value=9.8e-09  Score=75.89  Aligned_cols=61  Identities=18%  Similarity=0.144  Sum_probs=26.1

Q ss_pred             CCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCccccCcCceeecCccCCCcccccch
Q 046349           33 LSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLDRNEARGI   97 (119)
Q Consensus        33 l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~~~~~l~~~~~~~~   97 (119)
                      +++|++|++++|+ +..+|..  +++|+.|++++|...+..|..+..+..|.   .+++..|...+.
T Consensus       450 l~~L~~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---~L~l~~N~~~~~  512 (549)
T 2z81_A          450 LPRLQELYISRNK-LKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ---KIWLHTNPWDCS  512 (549)
T ss_dssp             CTTCCEEECCSSC-CSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC---EEECCSSCBCCC
T ss_pred             CChhcEEECCCCc-cCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccC---EEEecCCCccCC
Confidence            3444444444444 2244432  34455555555444443333344332221   234445554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.86  E-value=1.4e-08  Score=69.32  Aligned_cols=60  Identities=22%  Similarity=0.230  Sum_probs=33.1

Q ss_pred             ccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCC
Q 046349            7 LGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTV   67 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~   67 (119)
                      ++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+. .+|. .   +++|+.|++++|..
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcC
Confidence            45556666666666666555542 556666666666666532 3332 1   34566666666533

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.86  E-value=9.1e-09  Score=77.41  Aligned_cols=71  Identities=15%  Similarity=0.161  Sum_probs=41.5

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCccccC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIFS   77 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~~   77 (119)
                      .|+++++|++|++++|.++.+|+ .++.+++|++|++++|.+ ..+|..    +++|+.|++++|...+..|..++.
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  169 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA  169 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence            56666666666666666664443 456666666666666663 344432    355666677666555444444543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.85  E-value=8.7e-09  Score=73.15  Aligned_cols=71  Identities=21%  Similarity=0.231  Sum_probs=55.6

Q ss_pred             cc-CCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCCccccCccccCc
Q 046349            7 LG-QLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         7 ~~-~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      +. ++++|++|++++|.++.+| ..+..+++|++|++++|++ ..+|. .   +.+|+.|++++|...+..|..+..+
T Consensus        59 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  135 (361)
T 2xot_A           59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM  135 (361)
T ss_dssp             SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc
Confidence            44 8899999999999999766 4699999999999999984 45544 2   5789999999977665556666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.85  E-value=5.7e-09  Score=78.07  Aligned_cols=74  Identities=20%  Similarity=0.209  Sum_probs=33.9

Q ss_pred             hccCCCCCCEEeccCCCCcc--CC--hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            6 SLGQLSTLEELFLVKNNFVR--IP--ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~--lP--~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      .++++++|++|++++|.+..  +|  ..+..+++|+.|++++|++.+..|..   +++|+.|++++|...+..|..+..+
T Consensus       444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  523 (606)
T 3t6q_A          444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL  523 (606)
T ss_dssp             TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred             HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence            34444445555555444431  11  23444555555555555433333332   2445555555555444444444443


Q ss_pred             C
Q 046349           79 Y   79 (119)
Q Consensus        79 ~   79 (119)
                      +
T Consensus       524 ~  524 (606)
T 3t6q_A          524 K  524 (606)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.85  E-value=1.3e-08  Score=75.78  Aligned_cols=49  Identities=18%  Similarity=0.194  Sum_probs=25.4

Q ss_pred             cChhccCCCCCCEEeccCCCCccCC---hhhhcCCCCCEEeccCcccccccC
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRIP---ESIMQLSKLKFLNLSYSERLQSLL   51 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~lP---~~~~~l~~L~~L~l~~n~~~~~lp   51 (119)
                      +|..++++++|++|++++|.++.+|   ..++.+++|+.|++++|++.+.+|
T Consensus       369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  420 (562)
T 3a79_B          369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY  420 (562)
T ss_dssp             TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred             hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence            3445555555555555555555433   234555555555555555433233

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.85  E-value=3.7e-09  Score=67.93  Aligned_cols=77  Identities=23%  Similarity=0.230  Sum_probs=61.0

Q ss_pred             hhccCCCCCCEEeccCCCCccCChhh-hcCCCCCEEeccCcccccccCC--C---CCCCceeeccCCCCccccCcc----
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIPESI-MQLSKLKFLNLSYSERLQSLLK--L---PCSLLELDAHHCTVLDTLSGL----   74 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP~~~-~~l~~L~~L~l~~n~~~~~lp~--~---~~~L~~L~l~~~~~~~~lp~~----   74 (119)
                      ..++.+++|++|++++|.++.+|+.+ ..+++|++|++++|+ ++.+|.  .   +++|+.|++++|.. ..+|..    
T Consensus        58 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~  135 (176)
T 1a9n_A           58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYV  135 (176)
T ss_dssp             CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHH
T ss_pred             cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHH
Confidence            46788999999999999999888654 999999999999998 577776  2   57899999999754 466764    


Q ss_pred             ccCcCceee
Q 046349           75 IFSSYEIDL   83 (119)
Q Consensus        75 ~~~l~~l~~   83 (119)
                      +..++.|..
T Consensus       136 ~~~l~~L~~  144 (176)
T 1a9n_A          136 IYKVPQVRV  144 (176)
T ss_dssp             HHHCTTCSE
T ss_pred             HHHCCccce
Confidence            554444433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.85  E-value=6.9e-09  Score=75.71  Aligned_cols=75  Identities=21%  Similarity=0.172  Sum_probs=50.7

Q ss_pred             ChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCc
Q 046349            4 PESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSS   78 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l   78 (119)
                      |..|+++++|++|++++|.++.+|. .+.++++|++|++++|++.+..|..   +.+|+.|++++|...+..|..+..+
T Consensus        73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  151 (477)
T 2id5_A           73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL  151 (477)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC
T ss_pred             hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC
Confidence            5567777788888888887776665 4677778888888887755544543   4567777777765555445555533

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.85  E-value=7.6e-09  Score=72.26  Aligned_cols=62  Identities=32%  Similarity=0.483  Sum_probs=42.9

Q ss_pred             hccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCc
Q 046349            6 SLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVL   68 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~   68 (119)
                      .++++++|++|++++|.++.+ |..++.+++|++|++++|. +..+|.. ..+|+.|++++|...
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n~l~  134 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEIT  134 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSCCC
T ss_pred             hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEECCCCccc
Confidence            567777788888877777744 6677777778888887777 4456654 356777777765443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.85  E-value=1.9e-10  Score=77.11  Aligned_cols=60  Identities=13%  Similarity=0.205  Sum_probs=33.6

Q ss_pred             hccCCCCCCEEeccCCC-CccCCh-hhhcCCCCCEEeccC-cccccccCC-C---CCCCceeeccCCC
Q 046349            6 SLGQLSTLEELFLVKNN-FVRIPE-SIMQLSKLKFLNLSY-SERLQSLLK-L---PCSLLELDAHHCT   66 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~-l~~lP~-~~~~l~~L~~L~l~~-n~~~~~lp~-~---~~~L~~L~l~~~~   66 (119)
                      .++++++|++|++++|. ++.+|+ .+.++++|++|++++ |+ +..+|. .   +++|+.|++++|.
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~  116 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTG  116 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEEC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCC
Confidence            45566666666666665 555554 556666666666665 54 334432 1   3455666665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.84  E-value=1.3e-08  Score=72.59  Aligned_cols=70  Identities=17%  Similarity=0.192  Sum_probs=37.5

Q ss_pred             hccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCcccc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      .++++++|++|++++|.+..+| ..++.+++|++|++++|. +..+|..    +++|++|++++|...+..|..+.
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  162 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ  162 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred             hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence            4555666666666666666443 345666666666666665 3344432    34566666666544433333343

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.83  E-value=3.7e-11  Score=78.73  Aligned_cols=68  Identities=25%  Similarity=0.341  Sum_probs=54.5

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLS   72 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp   72 (119)
                      ++|..++.+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..   +++|+.|++++|.. ..+|
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l-~~l~  109 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQI-ASLS  109 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEEC-CCHH
T ss_pred             hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcC-CcCC
Confidence            35568899999999999999999888 89999999999999998 4577765   36788888887644 3355

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.83  E-value=3.4e-09  Score=82.62  Aligned_cols=76  Identities=20%  Similarity=0.109  Sum_probs=49.8

Q ss_pred             ChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC-----CCCCceeeccCCCCccccC-cccc
Q 046349            4 PESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL-----PCSLLELDAHHCTVLDTLS-GLIF   76 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-----~~~L~~L~l~~~~~~~~lp-~~~~   76 (119)
                      |..|+++++|++|++++|.+. ..|.+++++++|++|++++|.+.+.+|..     +++|+.|++++|...+..| ..++
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  145 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG  145 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence            556777777777777777777 34667777777777777777765555442     4567777777766554433 3444


Q ss_pred             CcC
Q 046349           77 SSY   79 (119)
Q Consensus        77 ~l~   79 (119)
                      +++
T Consensus       146 ~L~  148 (844)
T 3j0a_A          146 KLN  148 (844)
T ss_dssp             TCS
T ss_pred             hCC
Confidence            433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.83  E-value=1.2e-08  Score=74.19  Aligned_cols=61  Identities=23%  Similarity=0.161  Sum_probs=32.5

Q ss_pred             ChhccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCC
Q 046349            4 PESLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHC   65 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~   65 (119)
                      |..|+++++|++|++++|.+..++ ..+.++++|++|++++|++ ..+|..    +++|+.|++++|
T Consensus        92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCEEECCSC
T ss_pred             HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC-CccChhhhcccCCCCEEECCCC
Confidence            344556666666666666666333 4556666666666666653 233321    344555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.83  E-value=1.3e-08  Score=69.41  Aligned_cols=71  Identities=23%  Similarity=0.076  Sum_probs=46.4

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      .++++++|++|++++|.++.+++ .+..+++|++|++++|.+.+..|..   +.+|+.|++++|...+..+..+.
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  121 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG  121 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcc
Confidence            56777778888888887775554 6777778888888887744444333   45677888877654443333344

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.83  E-value=8.4e-09  Score=71.28  Aligned_cols=66  Identities=29%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             ChhccCCCCCCEEeccCCCCcc--CChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCcc
Q 046349            4 PESLGQLSTLEELFLVKNNFVR--IPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLD   69 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~--lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~   69 (119)
                      |..++++++|++|++++|.+..  +|..+..+++|+.|++++|.+.+..|..   +++|+.|++++|...+
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence            3345556666666666666552  5556666666666666666644433433   3456677776654433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.82  E-value=8.2e-09  Score=73.61  Aligned_cols=69  Identities=22%  Similarity=0.134  Sum_probs=45.7

Q ss_pred             hhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccc
Q 046349            5 ESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLI   75 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~   75 (119)
                      ..++.+++|++|++++|.+. ..|..+..+++|+.|++++|+ +..+|..   +++|+.|++++|. +..+|..+
T Consensus       242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~  314 (390)
T 3o6n_A          242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ  314 (390)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGH
T ss_pred             HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccc
Confidence            35667777788888877777 446677777777777777777 3444543   4567777777754 33555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.82  E-value=1.8e-08  Score=75.80  Aligned_cols=80  Identities=20%  Similarity=0.231  Sum_probs=59.6

Q ss_pred             ChhccCCCCCCEEeccCCCCccCChh-hhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcC
Q 046349            4 PESLGQLSTLEELFLVKNNFVRIPES-IMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSY   79 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~lP~~-~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~   79 (119)
                      |..|+++++|++|++++|.++.+|+. ++.+++|++|++++|.+.+..|..   +++|+.|++++|...+.-+..+.++.
T Consensus       116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  195 (597)
T 3oja_B          116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF  195 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCS
T ss_pred             HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhh
Confidence            34578999999999999999988876 589999999999999976666654   46799999998765443223344444


Q ss_pred             ceee
Q 046349           80 EIDL   83 (119)
Q Consensus        80 ~l~~   83 (119)
                      .+++
T Consensus       196 ~L~l  199 (597)
T 3oja_B          196 HANV  199 (597)
T ss_dssp             EEEC
T ss_pred             hhhc
Confidence            4433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.82  E-value=1.5e-08  Score=70.87  Aligned_cols=68  Identities=28%  Similarity=0.378  Sum_probs=49.8

Q ss_pred             ChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCccccCc
Q 046349            4 PESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~~lp~   73 (119)
                      |..++++++|++|++++|.++.+ |..++.+++|++|++++|+ +..+|.. ..+|++|++++|... .+|.
T Consensus        71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l~~n~i~-~~~~  140 (332)
T 2ft3_A           71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRIHDNRIR-KVPK  140 (332)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEECCSSCCC-CCCS
T ss_pred             HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEECCCCccC-ccCH
Confidence            34678888888888888888844 6678888888888888887 4466654 467888888876543 4443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.81  E-value=1.3e-08  Score=71.81  Aligned_cols=59  Identities=29%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             hccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHC   65 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~   65 (119)
                      .++++++|++|++++|.++.+ |..++++++|++|++++|++ ..+|..    +++|++|++++|
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n  134 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGN  134 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEECTTC
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEECCCC
Confidence            355555555555555555533 33455555555555555552 233321    345555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.81  E-value=7.9e-09  Score=76.56  Aligned_cols=73  Identities=26%  Similarity=0.276  Sum_probs=36.7

Q ss_pred             ChhccCCCCCCEEeccCCCCc--cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            4 PESLGQLSTLEELFLVKNNFV--RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      |..++++++|++|++++|.+.  .+|..+..+++|+.|++++|++.+..|..   +++|+.|++++|...+..|..+.
T Consensus       438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  515 (570)
T 2z63_A          438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD  515 (570)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence            334455555555555555554  35555555555555555555544433433   24556666665544433333343

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.81  E-value=6.9e-09  Score=76.71  Aligned_cols=67  Identities=24%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCccccc-ccCCC---CCCCceeeccCCCCccccC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQ-SLLKL---PCSLLELDAHHCTVLDTLS   72 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~-~lp~~---~~~L~~L~l~~~~~~~~lp   72 (119)
                      .|+++++|++|++++|.++.+|+ .++++++|++|++++|.+.+ .+|..   +++|+.|++++|...+.+|
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence            34455555555555555554333 25555555555555554322 12222   3445555555544444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.80  E-value=1.8e-08  Score=73.08  Aligned_cols=40  Identities=30%  Similarity=0.321  Sum_probs=20.4

Q ss_pred             hccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~   45 (119)
                      .|+++++|++|++++|.++.++ ..+.++++|++|++++|+
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            4455555555555555555333 345555555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.78  E-value=3.2e-08  Score=67.52  Aligned_cols=59  Identities=22%  Similarity=0.321  Sum_probs=40.5

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCT   66 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~   66 (119)
                      .++.+++|++|++++|.++.+|+ +..+++|+.|++++|+ +..+|.. ..+|+.|++++|.
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~  117 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNE  117 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSC
T ss_pred             HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEEEccCCc
Confidence            56777778888888887777766 7777778888887777 3344433 2556667776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.78  E-value=9.4e-09  Score=71.41  Aligned_cols=79  Identities=14%  Similarity=0.049  Sum_probs=52.8

Q ss_pred             ccCCCCCCEEeccCCCCccCChh----hhcCCCCCEEeccCcccccccCCC---C---CCCceeeccCCCCccccCcccc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPES----IMQLSKLKFLNLSYSERLQSLLKL---P---CSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~----~~~l~~L~~L~l~~n~~~~~lp~~---~---~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      ++.+++|++|++++|.++.+|..    ++.+++|++|++++|.+.+..|..   +   ++|+.|++++|... .+|..+.
T Consensus       193 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~  271 (310)
T 4glp_A          193 PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP  271 (310)
T ss_dssp             TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred             hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc
Confidence            35778888888888888766552    467788888888888866555643   2   47888888876544 6676554


Q ss_pred             -CcCceeecCc
Q 046349           77 -SSYEIDLSCN   86 (119)
Q Consensus        77 -~l~~l~~~~~   86 (119)
                       +++.|++.+|
T Consensus       272 ~~L~~L~Ls~N  282 (310)
T 4glp_A          272 AKLRVLDLSSN  282 (310)
T ss_dssp             SCCSCEECCSC
T ss_pred             CCCCEEECCCC
Confidence             4445555433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.78  E-value=2.2e-08  Score=69.75  Aligned_cols=40  Identities=25%  Similarity=0.227  Sum_probs=20.9

Q ss_pred             hccCCCCCCEEeccCCCCccC-Chhh-hcCCCCCEEeccCcc
Q 046349            6 SLGQLSTLEELFLVKNNFVRI-PESI-MQLSKLKFLNLSYSE   45 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~l-P~~~-~~l~~L~~L~l~~n~   45 (119)
                      .++.+++|++|++++|.+..+ |..+ ..+++|++|++++|.
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence            445555666666666665532 2333 245555555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.77  E-value=1.3e-08  Score=68.08  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=48.5

Q ss_pred             cChhccCCCCCC---EEeccCC-CCccCCh-hhhcCCCCC-EEeccCcccccccCCC---CCCCceeeccCCCCccccCc
Q 046349            3 LPESLGQLSTLE---ELFLVKN-NFVRIPE-SIMQLSKLK-FLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus         3 lP~~~~~l~~L~---~L~ls~n-~l~~lP~-~~~~l~~L~-~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~   73 (119)
                      +|. ++.+++|+   +|++++| .++.+|+ .+..+++|+ .|++++|++ ..+|..   ..+|+.|++++|..+..+|.
T Consensus       120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~~~L~~L~L~~n~~l~~i~~  197 (239)
T 2xwt_C          120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDK  197 (239)
T ss_dssp             CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTTCEEEEEECTTCTTCCEECT
T ss_pred             ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCCCCCCEEEcCCCCCcccCCH
Confidence            555 67777777   8888888 7886665 478888888 888888874 466654   24678888887643445543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.77  E-value=4.9e-10  Score=82.11  Aligned_cols=80  Identities=21%  Similarity=0.210  Sum_probs=35.4

Q ss_pred             CcChhccCCCCCCEEeccCCCCc-cCChhhhcCCCC-------------CEEeccCcccccccCCCCCCCceeeccCCCC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKL-------------KFLNLSYSERLQSLLKLPCSLLELDAHHCTV   67 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L-------------~~L~l~~n~~~~~lp~~~~~L~~L~l~~~~~   67 (119)
                      ++|.+++++++|++|++++|.+. .+|.+++.+++|             ++|++++|. +..+|..+++|+.|++++|..
T Consensus        25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~~~~L~~L~l~~n~l  103 (454)
T 1jl5_A           25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPELPPHLESLVASCNSL  103 (454)
T ss_dssp             ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSCCTTCSEEECCSSCC
T ss_pred             hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCCcCCCCEEEccCCcC
Confidence            35666666666666666666655 566555555432             555555555 334444444555555554333


Q ss_pred             ccccCccccCcCceee
Q 046349           68 LDTLSGLIFSSYEIDL   83 (119)
Q Consensus        68 ~~~lp~~~~~l~~l~~   83 (119)
                      .+ +|..+.+++.+++
T Consensus       104 ~~-lp~~~~~L~~L~l  118 (454)
T 1jl5_A          104 TE-LPELPQSLKSLLV  118 (454)
T ss_dssp             SS-CCCCCTTCCEEEC
T ss_pred             Cc-cccccCCCcEEEC
Confidence            22 4444334443333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.77  E-value=1.9e-08  Score=72.98  Aligned_cols=38  Identities=37%  Similarity=0.394  Sum_probs=16.5

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      +.++++|++|++++|.++.+|. +..+++|+.|++++|+
T Consensus       181 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          181 FEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNH  218 (440)
T ss_dssp             TTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSC
T ss_pred             hhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCc
Confidence            3444444444444444444432 3344444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.77  E-value=3.9e-08  Score=71.51  Aligned_cols=68  Identities=29%  Similarity=0.334  Sum_probs=37.4

Q ss_pred             hhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCc
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~   73 (119)
                      ..|.++++|++|++++|.++.+|+ .+..+++|++|++++|+ +..+|..    +++|+.|++++|+.++.+|.
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence            345556666666666666665444 35556666666666665 3334331    34566666665555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.77  E-value=4e-08  Score=74.72  Aligned_cols=88  Identities=30%  Similarity=0.327  Sum_probs=62.3

Q ss_pred             CCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeeccCCCCccccCccccCcCceeecCccCCC
Q 046349           11 STLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLSCNFKLD   90 (119)
Q Consensus        11 ~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~~~~~l~   90 (119)
                      ++|++|++++|.++.+|   ..+++|+.|++++|+ +..+|..+.+|+.|++++|.. ..+|..+..++.|.   .+++.
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L-~~lp~~l~~l~~L~---~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQL-TRLPESLIHLSSET---TVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCC-CSCCGGGGGSCTTC---EEECC
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCC-CcCCHHHhhccccC---EEEec
Confidence            67888888888888777   456788888888887 557777778899999988654 47888777555443   23566


Q ss_pred             cccccchHHHHHHHHH
Q 046349           91 RNEARGIVEDALQEIQ  106 (119)
Q Consensus        91 ~~~~~~~~~~~~~~~~  106 (119)
                      .|...+.....+..+.
T Consensus       293 ~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          293 GNPLSERTLQALREIT  308 (622)
T ss_dssp             SCCCCHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHhcc
Confidence            6666665555554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.76  E-value=1.2e-08  Score=79.59  Aligned_cols=83  Identities=25%  Similarity=0.207  Sum_probs=61.1

Q ss_pred             ChhccCCCCCCEEeccCCCCc-cC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcc--cc
Q 046349            4 PESLGQLSTLEELFLVKNNFV-RI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGL--IF   76 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~-~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~--~~   76 (119)
                      |..|+++++|++|++++|.+. .+ |..|.++++|++|++++|.+.+..|..   +.+|++|++++|...+.+|..  +.
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  120 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR  120 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence            567888888999999888544 66 667899999999999999866666765   467889999988777766654  44


Q ss_pred             ---CcCceeecCc
Q 046349           77 ---SSYEIDLSCN   86 (119)
Q Consensus        77 ---~l~~l~~~~~   86 (119)
                         +++.|++.+|
T Consensus       121 ~L~~L~~L~Ls~N  133 (844)
T 3j0a_A          121 NLKALTRLDLSKN  133 (844)
T ss_dssp             SCSSCCEEEEESC
T ss_pred             ccCCCCEEECCCC
Confidence               3444555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.76  E-value=7.5e-09  Score=72.03  Aligned_cols=71  Identities=18%  Similarity=0.087  Sum_probs=58.4

Q ss_pred             CCCCCCEEeccCCCCc-cCChhh--hcCCCCCEEeccCcccccccCCC---C-----CCCceeeccCCCCccccCccccC
Q 046349            9 QLSTLEELFLVKNNFV-RIPESI--MQLSKLKFLNLSYSERLQSLLKL---P-----CSLLELDAHHCTVLDTLSGLIFS   77 (119)
Q Consensus         9 ~l~~L~~L~ls~n~l~-~lP~~~--~~l~~L~~L~l~~n~~~~~lp~~---~-----~~L~~L~l~~~~~~~~lp~~~~~   77 (119)
                      ++++|++|++++|.++ .+|..+  +.+++|++|++++|++.+. |..   +     ++|++|++++|...+..|..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            7999999999999999 799876  8999999999999996554 653   3     78999999998766655567765


Q ss_pred             cCc
Q 046349           78 SYE   80 (119)
Q Consensus        78 l~~   80 (119)
                      ++.
T Consensus       172 l~~  174 (312)
T 1wwl_A          172 FPA  174 (312)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.76  E-value=9.1e-09  Score=75.91  Aligned_cols=40  Identities=28%  Similarity=0.331  Sum_probs=24.6

Q ss_pred             hhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      ..|+++++|++|++++|.++.+++ ++.+++|++|++++|.
T Consensus        52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~   91 (487)
T 3oja_A           52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY   91 (487)
T ss_dssp             GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE
T ss_pred             HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc
Confidence            456666666666666666664333 6666666666666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.75  E-value=1.7e-09  Score=75.66  Aligned_cols=63  Identities=25%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             hhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCc
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVL   68 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~   68 (119)
                      ..+..+++|++|++++|.+..+++ .+..+++|+.|++++|+ +..+|..   +++|+.|++++|...
T Consensus       211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred             HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCC
Confidence            567788888888888888885554 78888888888888887 4577765   467888888876543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.74  E-value=3e-08  Score=75.13  Aligned_cols=81  Identities=27%  Similarity=0.275  Sum_probs=59.2

Q ss_pred             hhccCCCCCCEEeccCCCCcc-CChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCccccCc-
Q 046349            5 ESLGQLSTLEELFLVKNNFVR-IPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLIFSS-   78 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~-lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~~~l-   78 (119)
                      ..|+++++|++|++++|.+.. .|..++++++|++|++++|. +..+|..    +.+|++|++++|...+..|..++.+ 
T Consensus        43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  121 (680)
T 1ziw_A           43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK  121 (680)
T ss_dssp             GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred             HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence            358888999999999999884 46678999999999999998 4556652    5789999999876654444556543 


Q ss_pred             --CceeecCc
Q 046349           79 --YEIDLSCN   86 (119)
Q Consensus        79 --~~l~~~~~   86 (119)
                        +.|++.+|
T Consensus       122 ~L~~L~Ls~n  131 (680)
T 1ziw_A          122 NLITLDLSHN  131 (680)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence              44555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.73  E-value=5.1e-08  Score=73.50  Aligned_cols=91  Identities=20%  Similarity=0.231  Sum_probs=53.4

Q ss_pred             CCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCC-------ceeeccCCCCccccCccccCcCce
Q 046349            9 QLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSL-------LELDAHHCTVLDTLSGLIFSSYEI   81 (119)
Q Consensus         9 ~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L-------~~L~l~~~~~~~~lp~~~~~l~~l   81 (119)
                      .+++|++|++++|.++.+|. +.  ++|+.|++++|+ +..+|....+|       +.|++++| .+..+|..++.++.|
T Consensus       158 ~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L  232 (571)
T 3cvr_A          158 LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPT  232 (571)
T ss_dssp             CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCCCC--------CCEEEECCSS-CCCCCCGGGGGSCTT
T ss_pred             cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhhHHHhhhcccccceEEecCCC-cceecCHHHhcCCCC
Confidence            34566666666666666665 44  667777777776 34666533356       77777775 344677776655444


Q ss_pred             eecCccCCCcccccchHHHHHHHHHH
Q 046349           82 DLSCNFKLDRNEARGIVEDALQEIQL  107 (119)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~  107 (119)
                      ..   +++..|...+.....+..+..
T Consensus       233 ~~---L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          233 CT---IILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             EE---EECCSSSCCHHHHHHHHHHHH
T ss_pred             CE---EEeeCCcCCCcCHHHHHHhhc
Confidence            33   356667776666666555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.72  E-value=9.8e-09  Score=71.58  Aligned_cols=40  Identities=28%  Similarity=0.331  Sum_probs=24.4

Q ss_pred             hhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      ..++++++|++|++++|.++.+++ +..+++|++|++++|.
T Consensus        52 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             HHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE
T ss_pred             HHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc
Confidence            355666666666666666664443 6666666666666665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.70  E-value=5.5e-08  Score=67.67  Aligned_cols=59  Identities=24%  Similarity=0.264  Sum_probs=35.7

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT   66 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~   66 (119)
                      .+..+++|++|++++|.+..+|+ +..+++|++|++++|+ +..+|..  +.+|+.|++++|.
T Consensus        58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~  118 (308)
T 1h6u_A           58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ  118 (308)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC
T ss_pred             hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC
Confidence            45666666777777666666655 6666666666666666 3334432  3456666666544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.70  E-value=6.3e-08  Score=66.92  Aligned_cols=37  Identities=27%  Similarity=0.407  Sum_probs=14.9

Q ss_pred             cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349            8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      +.+++|++|++++|.++.+++ +..+++|++|++++|.
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK  101 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence            334444444444444443333 3334444444444433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.70  E-value=2.3e-08  Score=69.40  Aligned_cols=72  Identities=15%  Similarity=0.083  Sum_probs=44.2

Q ss_pred             ChhccCCCCCCEEeccCCCCcc---CCh--hhhcCCCCCEEeccCcccccccCC-------CCCCCceeeccCCCCcccc
Q 046349            4 PESLGQLSTLEELFLVKNNFVR---IPE--SIMQLSKLKFLNLSYSERLQSLLK-------LPCSLLELDAHHCTVLDTL   71 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~---lP~--~~~~l~~L~~L~l~~n~~~~~lp~-------~~~~L~~L~l~~~~~~~~l   71 (119)
                      |..++++++|++|++++|.+..   ++.  .++.+++|++|++++|++ ..+|.       .+.+|++|++++|...+..
T Consensus       162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  240 (310)
T 4glp_A          162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATV  240 (310)
T ss_dssp             TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred             HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence            3456677777777777777642   322  235677777777777763 33333       1366777777776655555


Q ss_pred             Ccccc
Q 046349           72 SGLIF   76 (119)
Q Consensus        72 p~~~~   76 (119)
                      |..++
T Consensus       241 p~~~~  245 (310)
T 4glp_A          241 NPSAP  245 (310)
T ss_dssp             CSCCS
T ss_pred             hhhHH
Confidence            65544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.70  E-value=2.2e-08  Score=70.71  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=51.4

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccC-ccc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLS-GLI   75 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp-~~~   75 (119)
                      +||..+  .+++++|++++|.|+.+|+ +|.++++|++|++++|++.+.+|..    +.++..+...+++.+..+| ..+
T Consensus        23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f  100 (350)
T 4ay9_X           23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF  100 (350)
T ss_dssp             SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred             ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence            577766  3678999999999998886 5899999999999999877777753    2344443333334444443 344


Q ss_pred             cC
Q 046349           76 FS   77 (119)
Q Consensus        76 ~~   77 (119)
                      ..
T Consensus       101 ~~  102 (350)
T 4ay9_X          101 QN  102 (350)
T ss_dssp             CC
T ss_pred             hh
Confidence            43

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.70  E-value=1.1e-07  Score=66.33  Aligned_cols=63  Identities=21%  Similarity=0.184  Sum_probs=41.3

Q ss_pred             ChhccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCC
Q 046349            4 PESLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTV   67 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~   67 (119)
                      |..++.+++|++|++++|.++.++ ..+..+++|+.|++++|+ +..+|..   +++|+.|++++|..
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCC
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcC
Confidence            455667777777777777777444 367777777777777776 4466654   35677777776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.69  E-value=5.5e-08  Score=68.29  Aligned_cols=65  Identities=28%  Similarity=0.267  Sum_probs=52.9

Q ss_pred             cC-hhccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC-C--CCCceeeccCCCCc
Q 046349            3 LP-ESLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL-P--CSLLELDAHHCTVL   68 (119)
Q Consensus         3 lP-~~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~-~--~~L~~L~l~~~~~~   68 (119)
                      +| ..|+++++|++|+|++|.|+.+| ..|.++++|+.|+|++|++ ..+|.. +  ..|+.|++.+|...
T Consensus        47 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           47 LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc-ceeCHHHcccCCceEEEeeCCCcc
Confidence            44 56899999999999999999655 5789999999999999995 556653 2  23999999987653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.69  E-value=2.4e-08  Score=73.69  Aligned_cols=62  Identities=21%  Similarity=0.082  Sum_probs=37.6

Q ss_pred             ChhccCCCCCCEEeccCCCCc-cCChhhh-cCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349            4 PESLGQLSTLEELFLVKNNFV-RIPESIM-QLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT   66 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~-~lP~~~~-~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~   66 (119)
                      |..++++++|++|++++|.++ ..|..+. .+++|+.|++++|.+. .+|..  +++|+.|++++|.
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~Ls~N~  202 (487)
T 3oja_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK  202 (487)
T ss_dssp             GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSC
T ss_pred             chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-cccccccCCCCCEEECCCCC
Confidence            445667777777777777777 3555554 5667777777776633 33332  4556666666543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.68  E-value=5.9e-08  Score=73.81  Aligned_cols=56  Identities=34%  Similarity=0.509  Sum_probs=29.2

Q ss_pred             cChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeeccC
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHH   64 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l~~   64 (119)
                      +|..+.  ++|++|++++|.++.+|.   .+++|++|++++|+ +..+|..+++|++|++++
T Consensus        55 lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~  110 (622)
T 3g06_A           55 LPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFS  110 (622)
T ss_dssp             CCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCCCCTTCCEEEECS
T ss_pred             cChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCCCCCCCCEEECcC
Confidence            444443  455666666665555554   34555555555555 334444444455555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.67  E-value=7.3e-08  Score=67.48  Aligned_cols=69  Identities=25%  Similarity=0.237  Sum_probs=48.3

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCccccC
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSGLIFS   77 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~~~~~   77 (119)
                      +..+++|++|++++|.++.++ .+..+++|+.|++++|+ +..+|..  +++|+.|++++|...+..|..+..
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  309 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG  309 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred             hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence            677788888888888877663 57778888888888887 3444542  567788888877666555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.66  E-value=9.9e-08  Score=66.38  Aligned_cols=57  Identities=25%  Similarity=0.276  Sum_probs=31.9

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCC
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHC   65 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~   65 (119)
                      ++.+++|++|++++|.++.+| .+..+++|+.|++++|.+ ..+|..  +++|+.|++++|
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n  139 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLN  139 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECCSS
T ss_pred             HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCC-CCchhhcCCCCCCEEECCCC
Confidence            566666666666666666554 456666666666666653 333332  344555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.65  E-value=9.8e-08  Score=71.98  Aligned_cols=9  Identities=33%  Similarity=0.294  Sum_probs=3.4

Q ss_pred             CCceeeccC
Q 046349           56 SLLELDAHH   64 (119)
Q Consensus        56 ~L~~L~l~~   64 (119)
                      +|+.|++++
T Consensus       161 ~L~~L~Ls~  169 (571)
T 3cvr_A          161 SLEVLSVRN  169 (571)
T ss_dssp             TCCEEECCS
T ss_pred             CcCEEECCC
Confidence            333333333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.65  E-value=1.3e-07  Score=65.31  Aligned_cols=38  Identities=34%  Similarity=0.432  Sum_probs=17.4

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      ++++++|++|++++|.++.+|. +..+++|++|++++|+
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~  123 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNG  123 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSC
T ss_pred             cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCc
Confidence            4444444444444444444332 4444444444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.63  E-value=8.5e-08  Score=67.13  Aligned_cols=77  Identities=16%  Similarity=0.239  Sum_probs=52.5

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCc--cccCcCcee
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSG--LIFSSYEID   82 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~--~~~~l~~l~   82 (119)
                      ++.+++|++|++++|.++.+|. +..+++|+.|++++|. +..++..  +++|+.|++++|... .+|.  .+.+++.|+
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~  293 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQIS-DISVLNNLSQLNSLF  293 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEE
T ss_pred             hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCccC-CChhhcCCCCCCEEE
Confidence            6778888888888888887776 8888888888888887 4445543  577888888886543 3432  122444454


Q ss_pred             ecCc
Q 046349           83 LSCN   86 (119)
Q Consensus        83 ~~~~   86 (119)
                      +.+|
T Consensus       294 L~~n  297 (347)
T 4fmz_A          294 LNNN  297 (347)
T ss_dssp             CCSS
T ss_pred             CcCC
Confidence            4443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.63  E-value=8e-08  Score=65.55  Aligned_cols=77  Identities=22%  Similarity=0.201  Sum_probs=58.1

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCccc-cCcCcee
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSGLI-FSSYEID   82 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~~~-~~l~~l~   82 (119)
                      .+..+++|++|++++|.++.+| .+..+++|+.|++++|++ ..+|..  +++|+.|++++|... .+|... .+++.|+
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~l~-~l~~~~~~~L~~L~  112 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNRLK-NLNGIPSACLSRLF  112 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSCCS-CCTTCCCSSCCEEE
T ss_pred             chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCccC-CcCccccCcccEEE
Confidence            4677899999999999999998 799999999999999984 455543  578999999997543 354322 3444444


Q ss_pred             ecC
Q 046349           83 LSC   85 (119)
Q Consensus        83 ~~~   85 (119)
                      +.+
T Consensus       113 L~~  115 (263)
T 1xeu_A          113 LDN  115 (263)
T ss_dssp             CCS
T ss_pred             ccC
Confidence            443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.58  E-value=9.9e-08  Score=69.90  Aligned_cols=40  Identities=23%  Similarity=0.257  Sum_probs=27.0

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCccccc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQ   48 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~   48 (119)
                      ++.+++|++|++++|.++.+|  ++.+++|+.|++++|++.+
T Consensus       208 l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred             cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence            566677777777777777666  6666777777777766433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.58  E-value=2.2e-07  Score=68.02  Aligned_cols=69  Identities=26%  Similarity=0.275  Sum_probs=33.5

Q ss_pred             CCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeeccCCCCccccCccccCcCceeec
Q 046349           13 LEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDLS   84 (119)
Q Consensus        13 L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~~   84 (119)
                      |++|++++|.++.+| .++.+++|++|++++|+ +..+|..+.+|+.|++++|.. ..+|....+++.+++.
T Consensus       217 L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l-~~l~~~~~~L~~L~ls  285 (454)
T 1jl5_A          217 LESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYL-TDLPELPQSLTFLDVS  285 (454)
T ss_dssp             CCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCC-SCCCCCCTTCCEEECC
T ss_pred             ccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCcc-cccCcccCcCCEEECc
Confidence            344444444444444 25555666666666665 334555455555555555432 2244444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.56  E-value=3.4e-07  Score=67.06  Aligned_cols=37  Identities=22%  Similarity=0.385  Sum_probs=17.9

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      ++.+++|++|++++|.++.+|  ++.+++|++|++++|.
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~   96 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK   96 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC
T ss_pred             hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC
Confidence            444445555555555444443  4444444445444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.56  E-value=2.2e-07  Score=70.41  Aligned_cols=60  Identities=25%  Similarity=0.296  Sum_probs=27.7

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTV   67 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~   67 (119)
                      .++.+++|+.|++++|.+..+| .+..+++|+.|++++|.+ ..++..  +++|+.|++++|..
T Consensus       104 ~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGGGGSCTTCSEEECCSSCC
T ss_pred             hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCcc-CCchhhcccCCCCEEECcCCcC
Confidence            3444455555555555544432 344555555555555542 222221  34455555555433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.55  E-value=2.1e-07  Score=70.56  Aligned_cols=59  Identities=25%  Similarity=0.357  Sum_probs=36.1

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT   66 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~   66 (119)
                      .++.+++|+.|++++|.+..+|+ +..+++|+.|++++|. +..+|..  +.+|+.|++++|.
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~  120 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG  120 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC
T ss_pred             HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC
Confidence            46667777777777777766655 6666667777666666 3334432  3455566665543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.53  E-value=5.5e-08  Score=69.27  Aligned_cols=70  Identities=20%  Similarity=0.162  Sum_probs=46.5

Q ss_pred             hccCCCCCCEEeccCCCC-----ccCChhhhcCCCCCEEeccCcccccc----cCCC-----CCCCceeeccCCCCcc--
Q 046349            6 SLGQLSTLEELFLVKNNF-----VRIPESIMQLSKLKFLNLSYSERLQS----LLKL-----PCSLLELDAHHCTVLD--   69 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l-----~~lP~~~~~l~~L~~L~l~~n~~~~~----lp~~-----~~~L~~L~l~~~~~~~--   69 (119)
                      .+..+++|++|++++|.+     ..+|..+..+++|+.|++++|.+.+.    +|..     .++|+.|++++|....  
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g  290 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  290 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence            566777777777777777     45677777777777777777775433    3332     4567777777766554  


Q ss_pred             --ccCccc
Q 046349           70 --TLSGLI   75 (119)
Q Consensus        70 --~lp~~~   75 (119)
                        .+|..+
T Consensus       291 ~~~l~~~l  298 (386)
T 2ca6_A          291 VRTLKTVI  298 (386)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence              366554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.52  E-value=2.5e-09  Score=69.91  Aligned_cols=64  Identities=23%  Similarity=0.224  Sum_probs=52.3

Q ss_pred             cChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCc
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVL   68 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~   68 (119)
                      +| .++++++|++|++++|.++.+|..+..+++|+.|++++|+ +..+|..  +++|+.|++++|...
T Consensus        63 l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~l~~N~i~  128 (198)
T 1ds9_A           63 IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHSSEEEESEEECC
T ss_pred             cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCCccccCCCCCEEECCCCcCC
Confidence            56 7788899999999999999999888888999999999998 4456643  467899999886543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.47  E-value=5.9e-07  Score=65.52  Aligned_cols=38  Identities=32%  Similarity=0.379  Sum_probs=17.3

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      ++.+++|+.|++++|.+..+|+ +..+++|+.|++++|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ  298 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC
T ss_pred             hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc
Confidence            3444444444444444444333 4444444444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.43  E-value=2.1e-07  Score=64.81  Aligned_cols=38  Identities=32%  Similarity=0.370  Sum_probs=16.4

Q ss_pred             ccCCCCCCEEeccCC-CCc--cCChhhhcCC-CCCEEeccCc
Q 046349            7 LGQLSTLEELFLVKN-NFV--RIPESIMQLS-KLKFLNLSYS   44 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n-~l~--~lP~~~~~l~-~L~~L~l~~n   44 (119)
                      +.++++|++|++++| .++  .+|..+..++ +|++|++++|
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            333444444444444 443  1333444444 4444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.42  E-value=9.6e-08  Score=66.53  Aligned_cols=59  Identities=17%  Similarity=0.152  Sum_probs=27.9

Q ss_pred             ccCCCCCCEEeccCCCCc-c-CChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCC
Q 046349            7 LGQLSTLEELFLVKNNFV-R-IPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHC   65 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~-~-lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~   65 (119)
                      +..+++|++|++++|.+. . +|..+..+++|++|++++|.+.+..|..   +++|+.|++++|
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            334455555555555544 2 4444555555555555555433333322   334555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.42  E-value=1.4e-06  Score=63.61  Aligned_cols=58  Identities=24%  Similarity=0.217  Sum_probs=28.0

Q ss_pred             ccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCC-CCCCCceeeccCC
Q 046349            7 LGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLK-LPCSLLELDAHHC   65 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~-~~~~L~~L~l~~~   65 (119)
                      ++.+++|+.|++++|.+..+++ ++.+++|+.|++++|++.+..|- .+++|+.|++++|
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN  341 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred             ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence            4445555555555555554443 45555555555555553333321 1344555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.40  E-value=3.9e-07  Score=64.29  Aligned_cols=69  Identities=26%  Similarity=0.262  Sum_probs=33.8

Q ss_pred             cChhccCCCCCCEEeccC-CCCccCCh-hhhcCCCCCEEeccCcccccccCCC-CCCCceeeccCCCCccccC
Q 046349            3 LPESLGQLSTLEELFLVK-NNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL-PCSLLELDAHHCTVLDTLS   72 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~-n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~-~~~L~~L~l~~~~~~~~lp   72 (119)
                      +|..+....+|+.+++++ |.++.+|+ .|..+++|+.|++++|+ +..+|.. +.+|+.|.+.+++.++.+|
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred             CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCC
Confidence            344444444455555542 34445553 34555555555555555 3344432 4455555555555555555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=8e-07  Score=61.18  Aligned_cols=64  Identities=30%  Similarity=0.262  Sum_probs=50.5

Q ss_pred             cCCCCCCEEeccCCCCccC---ChhhhcCCCCCEEeccCcccccccCCC--CC--CCceeeccCCCCccccC
Q 046349            8 GQLSTLEELFLVKNNFVRI---PESIMQLSKLKFLNLSYSERLQSLLKL--PC--SLLELDAHHCTVLDTLS   72 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~l---P~~~~~l~~L~~L~l~~n~~~~~lp~~--~~--~L~~L~l~~~~~~~~lp   72 (119)
                      .++++|+.|+|++|.++.+   |..+..+++|+.|+|++|++. .+.+.  +.  +|+.|++.+|...+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-CchhhhhcccCCcceEEccCCcCccccC
Confidence            4578999999999999854   467789999999999999854 33322  33  89999999988777666

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.25  E-value=3.3e-07  Score=65.23  Aligned_cols=74  Identities=14%  Similarity=0.063  Sum_probs=47.5

Q ss_pred             cChhccCCCCCCEEeccCCCCc-c----CChhhhcCCCCCEEeccCcc---cccccCCC----------CCCCceeeccC
Q 046349            3 LPESLGQLSTLEELFLVKNNFV-R----IPESIMQLSKLKFLNLSYSE---RLQSLLKL----------PCSLLELDAHH   64 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~-~----lP~~~~~l~~L~~L~l~~n~---~~~~lp~~----------~~~L~~L~l~~   64 (119)
                      ++..+..+++|++|++++|.+. .    ++..+..+++|+.|++++|.   +.+.+|..          .++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            5566677778888888888776 3    23345677888888888763   22344432          36678888887


Q ss_pred             CCCcc----ccCcccc
Q 046349           65 CTVLD----TLSGLIF   76 (119)
Q Consensus        65 ~~~~~----~lp~~~~   76 (119)
                      |....    .+|..+.
T Consensus       104 n~l~~~~~~~l~~~l~  119 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLS  119 (386)
T ss_dssp             CCCCTTTHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHH
Confidence            66554    3555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.23  E-value=7.9e-07  Score=62.94  Aligned_cols=61  Identities=18%  Similarity=0.091  Sum_probs=30.8

Q ss_pred             ccCCCCCCEEeccCCCCccCC-----hhhhcCC-CCCEEeccCcccccccCCC--------CCCCceeeccCCCC
Q 046349            7 LGQLSTLEELFLVKNNFVRIP-----ESIMQLS-KLKFLNLSYSERLQSLLKL--------PCSLLELDAHHCTV   67 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP-----~~~~~l~-~L~~L~l~~n~~~~~lp~~--------~~~L~~L~l~~~~~   67 (119)
                      +...++|++|++++|.+...+     ..+..++ +|++|++++|.+.+..+..        ..+|+.|++++|..
T Consensus        18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            334444666666666665444     3455555 5666666666533222221        14555555555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.05  E-value=1.6e-06  Score=62.72  Aligned_cols=65  Identities=22%  Similarity=0.221  Sum_probs=36.1

Q ss_pred             CCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCcccccccCCC--------CCCCceeeccCCCCcc----ccCc
Q 046349           11 STLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSERLQSLLKL--------PCSLLELDAHHCTVLD----TLSG   73 (119)
Q Consensus        11 ~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~~~~~lp~~--------~~~L~~L~l~~~~~~~----~lp~   73 (119)
                      ++|++|++++|.++.     +|..+..+++|+.|++++|.+....+..        .++|+.|++++|...+    .+|.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            466777777776652     4555666667777777766543221111        2356666666655443    4554


Q ss_pred             cc
Q 046349           74 LI   75 (119)
Q Consensus        74 ~~   75 (119)
                      .+
T Consensus       393 ~l  394 (461)
T 1z7x_W          393 TL  394 (461)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.03  E-value=3.1e-06  Score=59.90  Aligned_cols=62  Identities=16%  Similarity=0.094  Sum_probs=34.1

Q ss_pred             hccCCC-CCCEEeccCCCCcc-CChhhhcC-----CCCCEEeccCcccccccCCC-------C-CCCceeeccCCCC
Q 046349            6 SLGQLS-TLEELFLVKNNFVR-IPESIMQL-----SKLKFLNLSYSERLQSLLKL-------P-CSLLELDAHHCTV   67 (119)
Q Consensus         6 ~~~~l~-~L~~L~ls~n~l~~-lP~~~~~l-----~~L~~L~l~~n~~~~~lp~~-------~-~~L~~L~l~~~~~   67 (119)
                      .+.+++ +|++|++++|.+.. .+..+..+     ++|++|++++|.+.+..+..       . ++|+.|++++|..
T Consensus        45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  121 (362)
T 3goz_A           45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF  121 (362)
T ss_dssp             HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence            445555 67777777776663 34445543     66666666666643332221       1 4566666666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.93  E-value=2.7e-06  Score=61.44  Aligned_cols=38  Identities=21%  Similarity=0.142  Sum_probs=18.8

Q ss_pred             cCCCCCCEEeccCCCCc-----cCChhhhcCCCCCEEeccCcc
Q 046349            8 GQLSTLEELFLVKNNFV-----RIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~-----~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      ..+++|++|++++|.+.     .+|..+..+++|++|++++|.
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~   67 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE   67 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc
Confidence            33445555555555544     234444455555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.84  E-value=1.9e-05  Score=54.27  Aligned_cols=59  Identities=20%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             cChhccCCCCCCEEeccCCCCccCChhhhcCC--CCCEEeccCcccccccCCC----------CCCCceeec
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLS--KLKFLNLSYSERLQSLLKL----------PCSLLELDA   62 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~--~L~~L~l~~n~~~~~lp~~----------~~~L~~L~l   62 (119)
                      +|..++.+++|+.|+|++|.|+.+ ..+..++  +|++|++++|.+.+.+|..          +++|+.||-
T Consensus       188 l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          188 MSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             chhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            456667899999999999999976 3455555  9999999999987777631          466777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.76  E-value=2.4e-05  Score=50.68  Aligned_cols=89  Identities=15%  Similarity=0.106  Sum_probs=62.0

Q ss_pred             cChhccCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCcccccc-----cCCC---CCCCceeeccCCCCccc---
Q 046349            3 LPESLGQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYSERLQS-----LLKL---PCSLLELDAHHCTVLDT---   70 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~-----lp~~---~~~L~~L~l~~~~~~~~---   70 (119)
                      +|.....-.+|+.||++++.++ .=-..+.++++|+.|++++|..+..     +...   ..+|+.|++++|..++.   
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            5554433457999999999987 2224578999999999999963321     2221   13699999999975432   


Q ss_pred             --cCccccCcCceeecCccCCCcc
Q 046349           71 --LSGLIFSSYEIDLSCNFKLDRN   92 (119)
Q Consensus        71 --lp~~~~~l~~l~~~~~~~l~~~   92 (119)
                        +. ...+++.|++.+|..+...
T Consensus       133 ~~L~-~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          133 IALH-HFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HHGG-GCTTCCEEEEESCTTCCCH
T ss_pred             HHHh-cCCCCCEEECCCCCCCCch
Confidence              32 3467788999999877653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.66  E-value=1.1e-05  Score=56.31  Aligned_cols=68  Identities=19%  Similarity=0.256  Sum_probs=53.2

Q ss_pred             CCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCc-eeeccCCCCccccC-ccccCcCce
Q 046349           10 LSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLL-ELDAHHCTVLDTLS-GLIFSSYEI   81 (119)
Q Consensus        10 l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~-~L~l~~~~~~~~lp-~~~~~l~~l   81 (119)
                      +++|+.+++++|.++.+|+ +|.++++|+.+++++|  +..++..    ..+|+ .+++.+  .+..++ ..|..+..|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence            7899999999999998887 6999999999999998  6677774    46688 888886  455565 455544443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.51  E-value=0.00016  Score=44.34  Aligned_cols=43  Identities=26%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCccc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSER   46 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~   46 (119)
                      ++|..+.  .+|++|+|++|.|+.+|. .|..+++|+.|+|++|.+
T Consensus        24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4554332  357888888888887776 467788888888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.47  E-value=0.00025  Score=49.37  Aligned_cols=72  Identities=19%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             cCh-hccCCCCCCEEeccCCCCccCCh-hhhcCCCCC-EEeccCcccccccCCC----CCCCceeeccCCCCccccCc-c
Q 046349            3 LPE-SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLK-FLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG-L   74 (119)
Q Consensus         3 lP~-~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~-~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~-~   74 (119)
                      ||. .|.++++|+.+++.+| ++.+++ +|.++++|+ .+++.+ . +..++..    +.+|+.+++.++ .+..++. .
T Consensus       241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~a  316 (329)
T 3sb4_A          241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGD-KITTLGDEL  316 (329)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSS-CCCEECTTT
T ss_pred             ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCC-ccCccchhh
Confidence            454 4889999999999998 887776 799999999 999998 3 6677754    467999999774 4556655 4


Q ss_pred             ccCc
Q 046349           75 IFSS   78 (119)
Q Consensus        75 ~~~l   78 (119)
                      |..+
T Consensus       317 F~~~  320 (329)
T 3sb4_A          317 FGNG  320 (329)
T ss_dssp             TCTT
T ss_pred             hcCC
Confidence            4433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.40  E-value=0.00012  Score=52.40  Aligned_cols=36  Identities=17%  Similarity=0.198  Sum_probs=19.1

Q ss_pred             CCCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCcc
Q 046349           10 LSTLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus        10 l~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~   45 (119)
                      .++|++|++++|.++.     ++..+...++|++|++++|.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG  194 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence            3455566666655542     33344555556666666555

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.40  E-value=5.4e-05  Score=54.13  Aligned_cols=66  Identities=18%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             ChhccCCCCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCccccc----ccCCC---CCCCceeeccCCCCcc
Q 046349            4 PESLGQLSTLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSERLQ----SLLKL---PCSLLELDAHHCTVLD   69 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~~~~----~lp~~---~~~L~~L~l~~~~~~~   69 (119)
                      +..+...++|++|++++|.+..     ++..+...++|+.|++++|.+..    .++..   .++|+.|++++|....
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            4456778999999999999873     35677888999999999998532    22222   3679999999986543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.37  E-value=6.5e-05  Score=55.80  Aligned_cols=58  Identities=28%  Similarity=0.246  Sum_probs=29.8

Q ss_pred             CCCCCCEEeccCCCCc-cCChhhh-cCCCCCEEeccCcccccc--cCC---CCCCCceeeccCCC
Q 046349            9 QLSTLEELFLVKNNFV-RIPESIM-QLSKLKFLNLSYSERLQS--LLK---LPCSLLELDAHHCT   66 (119)
Q Consensus         9 ~l~~L~~L~ls~n~l~-~lP~~~~-~l~~L~~L~l~~n~~~~~--lp~---~~~~L~~L~l~~~~   66 (119)
                      .+++|++|++++|.++ ..+..+. .+++|+.|++++|...+.  ++.   .+++|++|++++|.
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            4556666666666655 3333443 456666666666532222  222   13455566655554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.36  E-value=5.2e-05  Score=56.30  Aligned_cols=80  Identities=16%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             ccCCCCCCEEeccCCCCc-cCChhhhc-CCCCCEEeccCcccccccCC----CCCCCceeeccCCCCccccC----cccc
Q 046349            7 LGQLSTLEELFLVKNNFV-RIPESIMQ-LSKLKFLNLSYSERLQSLLK----LPCSLLELDAHHCTVLDTLS----GLIF   76 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~-~lP~~~~~-l~~L~~L~l~~n~~~~~lp~----~~~~L~~L~l~~~~~~~~lp----~~~~   76 (119)
                      +.++++|+.|++++ .++ ..+..+.. +++|+.|++++|.+.+..+.    .+++|+.|++++|...+..+    ..+.
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            45567777777766 555 33344544 77888888888875333221    25678888888877633222    2234


Q ss_pred             CcCceeecCcc
Q 046349           77 SSYEIDLSCNF   87 (119)
Q Consensus        77 ~l~~l~~~~~~   87 (119)
                      +++.|++.+|.
T Consensus       507 ~L~~L~l~~~~  517 (594)
T 2p1m_B          507 TMRSLWMSSCS  517 (594)
T ss_dssp             GSSEEEEESSC
T ss_pred             CCCEEeeeCCC
Confidence            56667777663

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.31  E-value=0.00013  Score=54.28  Aligned_cols=36  Identities=11%  Similarity=-0.075  Sum_probs=17.2

Q ss_pred             CCCCCEEeccCCCCc--cCChhhhcCCCCCEEeccCcc
Q 046349           10 LSTLEELFLVKNNFV--RIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus        10 l~~L~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      +++|++|++++|.++  .++..+..+++|+.|++++|.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence            444555555555444  233334445555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.03  E-value=0.00037  Score=44.92  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=18.6

Q ss_pred             cCCCCCCEEeccCC-CCcc-----CChhhhcCCCCCEEeccCcc
Q 046349            8 GQLSTLEELFLVKN-NFVR-----IPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         8 ~~l~~L~~L~ls~n-~l~~-----lP~~~~~l~~L~~L~l~~n~   45 (119)
                      ...+.|++|++++| .+..     +...+...++|++|++++|.
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~   76 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR   76 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence            34455555555555 4431     22334444555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.03  E-value=0.00097  Score=49.50  Aligned_cols=39  Identities=15%  Similarity=0.110  Sum_probs=22.1

Q ss_pred             ccCCCCCCEEeccCCCCc-----cCChhhhcCCCCCEEeccCcc
Q 046349            7 LGQLSTLEELFLVKNNFV-----RIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~-----~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      +.++++|++|++++|.+.     .++..+..+++|+.|++++|.
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            344566666666666654     233344556666666666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.77  E-value=0.0031  Score=38.46  Aligned_cols=51  Identities=12%  Similarity=-0.030  Sum_probs=40.1

Q ss_pred             CEEeccCCCCc--cCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCC
Q 046349           14 EELFLVKNNFV--RIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTV   67 (119)
Q Consensus        14 ~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~   67 (119)
                      ..++-+++.++  .+|..+.  .+|+.|+|++|+ +..+|..    +.+|+.|++.+|..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence            47888999998  8986532  469999999999 6677764    46799999998743

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.54  E-value=0.0016  Score=42.05  Aligned_cols=64  Identities=16%  Similarity=0.076  Sum_probs=45.6

Q ss_pred             hccCCCCCCEEeccCCC-Cc-cCChhhhcC----CCCCEEeccCcccccc-----cCCCCCCCceeeccCCCCccc
Q 046349            6 SLGQLSTLEELFLVKNN-FV-RIPESIMQL----SKLKFLNLSYSERLQS-----LLKLPCSLLELDAHHCTVLDT   70 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~-l~-~lP~~~~~l----~~L~~L~l~~n~~~~~-----lp~~~~~L~~L~l~~~~~~~~   70 (119)
                      .+.++++|+.|+|++|. ++ .-=..+..+    ++|++|++++|..+..     +. .+++|+.|++++|..++.
T Consensus        80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCC
T ss_pred             HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCc
Confidence            36789999999999995 66 222345554    3799999999963211     22 257899999999976543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.31  E-value=0.0018  Score=41.61  Aligned_cols=64  Identities=22%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             hhccCCCCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCcccccc----cCCC---CCCCceeec--cCCCCc
Q 046349            5 ESLGQLSTLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSERLQS----LLKL---PCSLLELDA--HHCTVL   68 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~~~~~----lp~~---~~~L~~L~l--~~~~~~   68 (119)
                      ..+...++|++|++++|.+..     +...+...+.|++|++++|.+...    +...   ..+|+.|++  ++|...
T Consensus        59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            446677899999999999872     455677778999999999985321    2222   357999999  766543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.70  E-value=0.0052  Score=43.77  Aligned_cols=78  Identities=21%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             CCCCCCEEeccC--CC------CccCChhh--hcCCCCCEEeccCcccccccCC------CCCCCceeeccCCCCccc--
Q 046349            9 QLSTLEELFLVK--NN------FVRIPESI--MQLSKLKFLNLSYSERLQSLLK------LPCSLLELDAHHCTVLDT--   70 (119)
Q Consensus         9 ~l~~L~~L~ls~--n~------l~~lP~~~--~~l~~L~~L~l~~n~~~~~lp~------~~~~L~~L~l~~~~~~~~--   70 (119)
                      .+++|+.|+|+.  |.      +..+-+.+  ..+++|+.|++.+|.+....+.      .+++|+.|+++.|.....  
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            688899998853  11      21222222  3578999999998875322211      256799999988654332  


Q ss_pred             --cCcc---ccCcCceeecCc
Q 046349           71 --LSGL---IFSSYEIDLSCN   86 (119)
Q Consensus        71 --lp~~---~~~l~~l~~~~~   86 (119)
                        ++..   +.+++.|++..|
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHhhcccCCcceEEECCCC
Confidence              3333   335555665544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.06  E-value=0.072  Score=38.28  Aligned_cols=57  Identities=16%  Similarity=0.087  Sum_probs=37.7

Q ss_pred             hccCCCCCCEEeccCCCCc-----cCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccC
Q 046349            6 SLGQLSTLEELFLVKNNFV-----RIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHH   64 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~-----~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~   64 (119)
                      .|.++++|+.+++.+|.+.     .++. +|.++++|+.+++..+  +..++..    ..+|+.+.+..
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECT
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECc
Confidence            4677888888888777654     3543 6777888888887743  4555553    35566666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.88  E-value=0.058  Score=38.76  Aligned_cols=56  Identities=14%  Similarity=0.167  Sum_probs=34.8

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeecc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAH   63 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~   63 (119)
                      .|.++.+|+.+++++|.++.+|......++|+.+.+..+  +..++..    ..+|+.+++.
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence            466788888888888877777764333567777777644  4444442    2345555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.32  E-value=0.24  Score=35.06  Aligned_cols=55  Identities=22%  Similarity=0.201  Sum_probs=37.3

Q ss_pred             ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccC
Q 046349            7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHH   64 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~   64 (119)
                      +.++.+|+.+.+..+ ++.+++ +|.++++|+.+++..+  +..++..    ..+|+.+.+..
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence            567788888888654 666654 6788888888888654  4556543    35677777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=93.31  E-value=0.077  Score=37.71  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=17.2

Q ss_pred             cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcc
Q 046349            8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSE   45 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~   45 (119)
                      ..+++|+.|++++|.-..+|. + .+++|+.|++..|.
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~  204 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG  204 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB
T ss_pred             hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC
Confidence            344555555555542113333 2 25555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.71  E-value=0.19  Score=35.23  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=15.6

Q ss_pred             cCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEecc
Q 046349            8 GQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLS   42 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~   42 (119)
                      .++.+|+.+.+.++.++.+++ +|.++.+|+.+++.
T Consensus       283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            334444444444444444332 34444444444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.85  E-value=0.35  Score=34.18  Aligned_cols=62  Identities=11%  Similarity=0.194  Sum_probs=42.5

Q ss_pred             ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~   73 (119)
                      +.++.+|+.+.+. +.++.+++ +|.++.+|+.+++..+  +..+...    ..+|+.+.+..+  +..+..
T Consensus       284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~  350 (394)
T 4gt6_A          284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKIPE  350 (394)
T ss_dssp             TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBCCG
T ss_pred             cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEEhH
Confidence            5678889998886 55666775 6888899999988765  4556553    356777777542  444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=90.46  E-value=1  Score=31.76  Aligned_cols=37  Identities=19%  Similarity=0.143  Sum_probs=19.2

Q ss_pred             ccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCc
Q 046349            7 LGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYS   44 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n   44 (119)
                      |.++.+|+.+++..+ ++.+++ +|.++++|+.+++..+
T Consensus       316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            445555555555432 444443 4555555665555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.53  E-value=2.1  Score=30.18  Aligned_cols=88  Identities=16%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccC------------CCCcc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHH------------CTVLD   69 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~------------~~~~~   69 (119)
                      .|.++..|+.+.+..+....-..++.++++|+.+.+..+  ...++..    ..+|+.+.+..            |..+.
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence            356788899998876544322346888999999988754  5566664    35677777653            32222


Q ss_pred             --ccCccccCcCceeecCccCCCccccc
Q 046349           70 --TLSGLIFSSYEIDLSCNFKLDRNEAR   95 (119)
Q Consensus        70 --~lp~~~~~l~~l~~~~~~~l~~~~~~   95 (119)
                        .+|..+.....-.|.+|-+|......
T Consensus       338 ~i~ip~sv~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          338 RIAIPSSVTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             EEEECTTCCBCCGGGGTTCTTCCEEEES
T ss_pred             EEEECcccCEEhHhHhhCCCCCCEEEEC
Confidence              23444433333455566666555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=88.92  E-value=1.2  Score=30.98  Aligned_cols=54  Identities=15%  Similarity=0.108  Sum_probs=30.2

Q ss_pred             cCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeecc
Q 046349            8 GQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAH   63 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~   63 (119)
                      .++.+|+.+.+..+ ++.++. .|.++++|+.+.+.++. +..+++.    ..+|+.+.+.
T Consensus       260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred             ceeehhcccccccc-ceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcC
Confidence            34555555555432 444443 56677777777776665 4455543    2456666664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=88.61  E-value=0.49  Score=30.87  Aligned_cols=16  Identities=6%  Similarity=0.135  Sum_probs=7.7

Q ss_pred             hhcCCCCCEEeccCcc
Q 046349           30 IMQLSKLKFLNLSYSE   45 (119)
Q Consensus        30 ~~~l~~L~~L~l~~n~   45 (119)
                      +..=+.|+.|+|++|.
T Consensus        66 L~~N~~L~~L~L~~n~   81 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTA   81 (197)
T ss_dssp             HTTCSCCCEEECTTSC
T ss_pred             HhhCCCcCEEEccCCC
Confidence            3334445555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 2   ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCS 56
            LP+ L QL  L  L +  NN          L +      + ++ L       C+
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 3e-04
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 4   PESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLS 42
              L  L  L+ L L +N+   IP+       L F  L 
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 5e-04
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 5   ESLGQLSTLEELFLVKNNFVRIPESIMQ-LSKLKFLNLSYSERLQSL 50
           +     S    L + +     +P   ++ L KL+  +    ++L +L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 5e-04
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 9   QLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHC 65
              +LEEL +  N  + +P       +L+ L  S++  L  + +LP +L +L   + 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPP---RLERLIASFN-HLAEVPELPQNLKQLHVEYN 334

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 4   PESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYS--ERLQSLLKLPCSLLELD 61
              +  L+ L+ LF   NN V    S+  L+ + +L+  ++    L  L  L   + +L 
Sbjct: 322 ISPVSSLTKLQRLFF-ANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT-RITQLG 379

Query: 62  AHH 64
            + 
Sbjct: 380 LND 382

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.25
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.25
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.11
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.06
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.02
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.01
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.97
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.74
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.56
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.51
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.5
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.47
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.45
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.31
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.92
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.18
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.83
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	85.99

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.25  E-value=2.6e-12  Score=87.82  Aligned_cols=79  Identities=28%  Similarity=0.369  Sum_probs=66.1

Q ss_pred             CcChhccCCCCCCEEeccC-CCCc-cCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            2 ELPESLGQLSTLEELFLVK-NNFV-RIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~-n~l~-~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      ++|++++++++|++|++++ |.+. .+|++|+++++|++|++++|++.+..|..   ...|+.+++++|...+.+|..+.
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            4799999999999999986 7888 89999999999999999999976666654   45688888888777778887777


Q ss_pred             CcCc
Q 046349           77 SSYE   80 (119)
Q Consensus        77 ~l~~   80 (119)
                      ++..
T Consensus       147 ~l~~  150 (313)
T d1ogqa_         147 SLPN  150 (313)
T ss_dssp             GCTT
T ss_pred             cCcc
Confidence            6554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.8e-11  Score=73.80  Aligned_cols=73  Identities=23%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccC--ccccCcCc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLS--GLIFSSYE   80 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp--~~~~~l~~   80 (119)
                      .++++++|++|++++|.++.+|+.++.+++|+.|++++|. +..+|..  +++|+.|++++|. +..+|  ..+..++.
T Consensus        15 ~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPR   91 (124)
T ss_dssp             CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTT
T ss_pred             ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCccccccccCeEECCCCc-cCCCCCchhhcCCCC
Confidence            5889999999999999999999999999999999999998 5667764  6789999999864 44444  23444333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=1.7e-11  Score=78.72  Aligned_cols=73  Identities=19%  Similarity=0.232  Sum_probs=42.4

Q ss_pred             hccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCCccccCccccCcC
Q 046349            6 SLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTVLDTLSGLIFSSY   79 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~~~~lp~~~~~l~   79 (119)
                      .|+++++|+.|++++|.+..+ +..+..+++|++|++++|++ ..+|. .   +++|++|++++|...+--|..|..+.
T Consensus        49 ~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l-~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~  126 (192)
T d1w8aa_          49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN  126 (192)
T ss_dssp             SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC-CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred             ccCCCceEeeeeccccccccccccccccccccceeeeccccc-cccCHHHHhCCCcccccccCCccccccCHHHhcCCc
Confidence            356667777777777776633 34566677777777777763 34433 2   45677777777543332233344333

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.06  E-value=7.1e-11  Score=80.48  Aligned_cols=78  Identities=13%  Similarity=0.014  Sum_probs=61.0

Q ss_pred             cChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcC
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSY   79 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~   79 (119)
                      +|..++.+++++.+++++|.+...++.++.+++|+.|++++|++.+.+|..   +++|++|++++|++.+.+|. +++++
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~  291 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQ  291 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCC
Confidence            567778888888998888888855667888888899999998888888876   46788889988887788885 34444


Q ss_pred             ce
Q 046349           80 EI   81 (119)
Q Consensus        80 ~l   81 (119)
                      .|
T Consensus       292 ~L  293 (313)
T d1ogqa_         292 RF  293 (313)
T ss_dssp             GS
T ss_pred             CC
Confidence            43

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=4.9e-10  Score=67.34  Aligned_cols=64  Identities=25%  Similarity=0.301  Sum_probs=55.4

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC-----CCCCceeeccCCCC
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL-----PCSLLELDAHHCTV   67 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~-----~~~L~~L~l~~~~~   67 (119)
                      ++|++++.+++|+.|++++|.++.+| .+..+++|+.+++++|+ +..+|..     +++|+.+++++|..
T Consensus        34 ~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          34 ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             cchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-cCCCCCchhhcCCCCCCEEECCCCcC
Confidence            68889999999999999999999887 59999999999999998 5555542     46899999999754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.01  E-value=5.1e-10  Score=71.58  Aligned_cols=77  Identities=16%  Similarity=0.142  Sum_probs=57.7

Q ss_pred             CcChhccCCCCCCEEeccCCCCc-cCC-hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFV-RIP-ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~-~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      +||..+.  +++++|++++|.|+ .++ ..|.++++|+.|++++|.+....+..   +.+|+.|++++|.....-|..|.
T Consensus        22 ~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~   99 (192)
T d1w8aa_          22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL   99 (192)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred             ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHh
Confidence            5787664  68999999999997 454 46899999999999999966555554   56899999999754443344565


Q ss_pred             CcCc
Q 046349           77 SSYE   80 (119)
Q Consensus        77 ~l~~   80 (119)
                      .+..
T Consensus       100 ~l~~  103 (192)
T d1w8aa_         100 GLHQ  103 (192)
T ss_dssp             TCTT
T ss_pred             CCCc
Confidence            4443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.2e-10  Score=70.09  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=25.5

Q ss_pred             cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCC
Q 046349            8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHC   65 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~   65 (119)
                      ..+++|+.|++++|.++.++ .+..+++|++|++++|+ +..+|..    +++|+.|++++|
T Consensus        38 ~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~N   97 (162)
T d1a9na_          38 ATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN   97 (162)
T ss_dssp             GGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC
T ss_pred             cccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccccceeccc
Confidence            34444555555555444442 24444455555555554 2233321    344555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.4e-09  Score=67.67  Aligned_cols=89  Identities=18%  Similarity=0.201  Sum_probs=65.8

Q ss_pred             CcChhccCCCCCCEEeccCC-CCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccCccc
Q 046349            2 ELPESLGQLSTLEELFLVKN-NFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSGLI   75 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n-~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~~~   75 (119)
                      ++|..+..+++|+.|++++| .++.++. +|.++++|+.|++++|+ +..++..    +++|++|++++|. +..+|...
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~   99 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKT   99 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTT
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccCCC-CcccChhh
Confidence            56888899999999999876 4887775 69999999999999999 5666543    5789999999854 56777765


Q ss_pred             cCcCceeecCccCCCccccc
Q 046349           76 FSSYEIDLSCNFKLDRNEAR   95 (119)
Q Consensus        76 ~~l~~l~~~~~~~l~~~~~~   95 (119)
                      .....+   ..+.+.+|.+.
T Consensus       100 ~~~~~l---~~L~L~~Np~~  116 (156)
T d2ifga3         100 VQGLSL---QELVLSGNPLH  116 (156)
T ss_dssp             TCSCCC---CEEECCSSCCC
T ss_pred             hccccc---cccccCCCccc
Confidence            432222   22345555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=9.3e-10  Score=68.93  Aligned_cols=78  Identities=15%  Similarity=0.048  Sum_probs=59.9

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCccc----cCcC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSGLI----FSSY   79 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~~~----~~l~   79 (119)
                      ++.++.+++.|++++|+|+.+|..+..+++|+.|++++|. +..++..  +++|+.|++++|. +..+|..+    .+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCC-CCccCCcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            4678889999999999999998877889999999999998 5667653  5789999999975 44555432    2444


Q ss_pred             ceeecC
Q 046349           80 EIDLSC   85 (119)
Q Consensus        80 ~l~~~~   85 (119)
                      .|.+.+
T Consensus        91 ~L~L~~   96 (162)
T d1a9na_          91 ELILTN   96 (162)
T ss_dssp             EEECCS
T ss_pred             cceecc
Confidence            454443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.90  E-value=2.7e-09  Score=72.51  Aligned_cols=71  Identities=23%  Similarity=0.330  Sum_probs=58.0

Q ss_pred             cCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeeccCCCCccccCccccCcCceee
Q 046349            8 GQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSGLIFSSYEIDL   83 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l~~~~~~~~lp~~~~~l~~l~~   83 (119)
                      ..+++|++|++++|.++.+|..   +++|+.|++++|+ +..+|+.+.+|+.|++++|. +..+|.....++.|.+
T Consensus       281 ~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~  351 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNH-LAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRM  351 (353)
T ss_dssp             CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEEC
T ss_pred             ccCCCCCEEECCCCccCccccc---cCCCCEEECCCCc-CCccccccCCCCEEECcCCc-CCCCCccccccCeeEC
Confidence            4467899999999999999864   5788899999998 67899888899999999976 6688876666666644

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.8e-09  Score=72.04  Aligned_cols=71  Identities=28%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCcccc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      +||+.+.  +++++|+|++|.|+.+|+ .|.++++|++|++++|+ +..+|..  +++|+.|++++|.. ...|..+.
T Consensus        24 ~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~l-~~~~~~~~   97 (266)
T d1p9ag_          24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQL-QSLPLLGQ   97 (266)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSCC-SSCCCCTT
T ss_pred             eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-ccccccccccccccccccccccc-cccccccc
Confidence            5676664  578999999999987774 68899999999999998 5566653  67888899888653 34454444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.6e-09  Score=64.86  Aligned_cols=62  Identities=29%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             hhccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCC
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTV   67 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~   67 (119)
                      ..|.++++|+.|++++|.++.++ .+|..+++|++|++++|+ +..+|..   ..+++.|++++|..
T Consensus        50 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             hhhccccccCcceeeccccCCcccccccccccccceeccCCC-CcccChhhhccccccccccCCCcc
Confidence            45899999999999999999775 579999999999999999 6677775   24689999998754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.78  E-value=1.8e-08  Score=67.99  Aligned_cols=79  Identities=19%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc-
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF-   76 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~-   76 (119)
                      ++|..+.  +++++|++++|.++.+|+ +|.++++|++|++++|.+....|..   +..|+.|++++|+ +..+|..+. 
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~~~  100 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPK  100 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCT
T ss_pred             ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccchhh
Confidence            5777764  689999999999999986 6899999999999999966555654   4678999999864 556776543 


Q ss_pred             CcCceee
Q 046349           77 SSYEIDL   83 (119)
Q Consensus        77 ~l~~l~~   83 (119)
                      .+..+..
T Consensus       101 ~l~~L~~  107 (305)
T d1xkua_         101 TLQELRV  107 (305)
T ss_dssp             TCCEEEC
T ss_pred             hhhhhhc
Confidence            3344443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=7.3e-09  Score=69.50  Aligned_cols=70  Identities=19%  Similarity=0.169  Sum_probs=35.4

Q ss_pred             ccCCCCCCEEeccCCCCccCC-hhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCcccc
Q 046349            7 LGQLSTLEELFLVKNNFVRIP-ESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIF   76 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~lP-~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~   76 (119)
                      +..+++|+.|++++|.++.+| .++.++++|+.+++++|++.+..|..   +++++.|++++|...+..|..++
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~  222 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA  222 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccc
Confidence            445555555555555555433 34555555555555555544433433   24555666655444333333443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=2.9e-08  Score=66.90  Aligned_cols=69  Identities=19%  Similarity=0.169  Sum_probs=54.1

Q ss_pred             cChhccCCCCCCEEeccCCCCccC-ChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCc
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRI-PESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~l-P~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~   73 (119)
                      .|..+.+++.++.|++++|.+..+ |..+.++++|++|++++|+ +..+|..   +++|++|++++|. ++.++.
T Consensus       187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~  259 (305)
T d1xkua_         187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGS  259 (305)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCT
T ss_pred             ChhHhhccccccccccccccccccccccccccccceeeeccccc-ccccccccccccCCCEEECCCCc-cCccCh
Confidence            356788888999999999998855 4578889999999999997 5677765   4678999999864 556654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.2e-08  Score=66.28  Aligned_cols=75  Identities=21%  Similarity=0.184  Sum_probs=61.0

Q ss_pred             hhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCC-C---CCCCceeeccCCCCccccCccccCcC
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLK-L---PCSLLELDAHHCTVLDTLSGLIFSSY   79 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~-~---~~~L~~L~l~~~~~~~~lp~~~~~l~   79 (119)
                      ..++.+.+|+.+++++|.++.+|+ .+..+++|+.|++++|.+ ..+|. .   +++|+.+++++|+..+..|..|..+.
T Consensus       123 ~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             cccchhcccchhhhccccccccChhHhccccchhhcccccCcc-cccchhhhccccccchhhhhhccccccChhHhhhhh
Confidence            356788999999999999998764 688999999999999984 45544 3   57899999999888777788887554


Q ss_pred             c
Q 046349           80 E   80 (119)
Q Consensus        80 ~   80 (119)
                      .
T Consensus       202 ~  202 (284)
T d1ozna_         202 R  202 (284)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.5e-08  Score=64.00  Aligned_cols=86  Identities=24%  Similarity=0.210  Sum_probs=58.8

Q ss_pred             hccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCCCccccCccccCcCce
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCTVLDTLSGLIFSSYEI   81 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~~~~~lp~~~~~l~~l   81 (119)
                      .+..+.++++|++++|.+..+|+ .+..+++++.+++++|++.+..+..   +++|+.|++++|. +..+|..+..+..|
T Consensus       119 ~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L  197 (266)
T d1p9ag_         119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLL  197 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCC
T ss_pred             ccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCC-CcccChhHCCCCCC
Confidence            34566777777777777776665 4567888999999999854444433   5779999999865 55899888755544


Q ss_pred             eecCccCCCccccc
Q 046349           82 DLSCNFKLDRNEAR   95 (119)
Q Consensus        82 ~~~~~~~l~~~~~~   95 (119)
                      ..   +.+.+|...
T Consensus       198 ~~---L~L~~Np~~  208 (266)
T d1p9ag_         198 PF---AFLHGNPWL  208 (266)
T ss_dssp             SE---EECCSCCBC
T ss_pred             CE---EEecCCCCC
Confidence            32   345555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.61  E-value=9.8e-10  Score=70.87  Aligned_cols=62  Identities=24%  Similarity=0.311  Sum_probs=50.7

Q ss_pred             cChhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC---CCCCceeeccCCC
Q 046349            3 LPESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL---PCSLLELDAHHCT   66 (119)
Q Consensus         3 lP~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~---~~~L~~L~l~~~~   66 (119)
                      +|.+++.+++|++|++++|.|+.++ .+..+++|+.|++++|. +..+|..   +.+|+.|++++|.
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccc-ccccccccccccccccccccccc
Confidence            5677889999999999999999886 58999999999999998 5667654   3467888887754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.60  E-value=1.1e-07  Score=60.70  Aligned_cols=59  Identities=17%  Similarity=0.258  Sum_probs=38.2

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT   66 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~   66 (119)
                      .+..+++|++|++++|.++.+++ ++++++|++|++++|. ...+|..  +..|+.+++++|.
T Consensus        57 ~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~~~  117 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQ  117 (199)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECCSSC
T ss_pred             ccccCCCcCcCccccccccCccc-ccCCcccccccccccc-cccccccccccccccccccccc
Confidence            45667777888888777776654 7777777777777776 3344432  3455555555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=1.3e-07  Score=64.94  Aligned_cols=61  Identities=25%  Similarity=0.280  Sum_probs=40.4

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVL   68 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~   68 (119)
                      .+..+++++.|++++|.++.+++ +..+++|+.|++++|+ +..+|..  +++|++|++++|...
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~-l~~l~~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNK-VSDVSSLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCC-CCCChhHcCCCCCCEEECCCCcCC
Confidence            45666777777777777776653 6777777777777776 4445432  456777777765443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=8.6e-08  Score=62.46  Aligned_cols=82  Identities=17%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             CcChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCccccC-ccc
Q 046349            2 ELPESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTLS-GLI   75 (119)
Q Consensus         2 ~lP~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp-~~~   75 (119)
                      ++|.++.  +++++|++++|.++.+|. .|.++++|++|++++|.+...+|..    +..++.+.+..++.+..++ ..+
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            5676553  578999999999998886 5899999999999999876666653    4567777776554444444 333


Q ss_pred             c---CcCceeecC
Q 046349           76 F---SSYEIDLSC   85 (119)
Q Consensus        76 ~---~l~~l~~~~   85 (119)
                      .   +++.+.+.+
T Consensus       100 ~~l~~L~~l~l~~  112 (242)
T d1xwdc1         100 QNLPNLQYLLISN  112 (242)
T ss_dssp             ECCTTCCEEEEES
T ss_pred             cccccccccccch
Confidence            3   344444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=2.1e-07  Score=60.26  Aligned_cols=65  Identities=20%  Similarity=0.277  Sum_probs=49.8

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~   73 (119)
                      .+.++++|++|++++|.+..++. ++++++|+.|++++|+ +..+|..  +++|++|++++|+ +..+|+
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~Ls~N~-lt~i~~  212 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQ-ISDVSP  212 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSC-CCBCGG
T ss_pred             hhccccccccccccccccccchh-hcccccceecccCCCc-cCCChhhcCCCCCCEEECcCCc-CCCCcc
Confidence            46778889999999988875553 8889999999999997 4556653  6789999999875 555653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.50  E-value=2.1e-07  Score=62.90  Aligned_cols=59  Identities=29%  Similarity=0.325  Sum_probs=37.9

Q ss_pred             CCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCCCCCCceeeccCCCCccccCc
Q 046349           10 LSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKLPCSLLELDAHHCTVLDTLSG   73 (119)
Q Consensus        10 l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~~~~L~~L~l~~~~~~~~lp~   73 (119)
                      +++|++|++++|+|+.+|+.+   .+|+.|++++|. ...++..++.|++|++++|. +..+|.
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~-l~~l~~lp~~L~~L~L~~n~-l~~lp~  115 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPELP---QSLKSLLVDNNN-LKALSDLPPLLEYLGVSNNQ-LEKLPE  115 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSCCCSCCTTCCEEECCSSC-CSSCCC
T ss_pred             CCCCCEEECCCCCCcccccch---hhhhhhhhhhcc-cchhhhhccccccccccccc-cccccc
Confidence            356677777777777776543   456677777776 55666656667777777653 445654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=1.5e-07  Score=60.97  Aligned_cols=58  Identities=19%  Similarity=0.233  Sum_probs=49.0

Q ss_pred             hhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCC--CCCCCceeeccC
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLK--LPCSLLELDAHH   64 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~--~~~~L~~L~l~~   64 (119)
                      ..++++++|+.|++++|.++.+|+ ++++++|++|++++|+ +..+|.  .+.+|+.|++++
T Consensus       167 ~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred             hhhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEeeC
Confidence            358899999999999999998875 8999999999999998 556664  367888888864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.46  E-value=1.6e-07  Score=64.47  Aligned_cols=59  Identities=15%  Similarity=0.263  Sum_probs=49.5

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCC-CCCCCceeeccCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLK-LPCSLLELDAHHC   65 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~-~~~~L~~L~l~~~   65 (119)
                      .+..+++|++|++++|.++.+| .++++++|++|++++|++.+..|- .+++|+.|++++|
T Consensus       324 ~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         324 PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            3788999999999999999877 699999999999999995544332 2678999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.45  E-value=2.9e-07  Score=59.19  Aligned_cols=59  Identities=25%  Similarity=0.351  Sum_probs=43.7

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCC
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCT   66 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~   66 (119)
                      .+..+++|++|++++|.++.+++ ++.+++|++|++++|+ +..+|..  +++|+.|++++|.
T Consensus        63 ~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC
T ss_pred             hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccc-cccccccccccccccccccccc
Confidence            46778888888888888887764 6788888888888887 4455543  4667777777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=4.9e-07  Score=57.55  Aligned_cols=78  Identities=27%  Similarity=0.344  Sum_probs=55.2

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCc--cccCcCce
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSG--LIFSSYEI   81 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~--~~~~l~~l   81 (119)
                      .++++++|+.+++++|.+..++ .+..+++|+.+++++|+ +..+|..  ..+++.|++.+|.. ..++.  .+.+++.|
T Consensus       101 ~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l-~~l~~l~~l~~L~~L  177 (199)
T d2omxa2         101 PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFSSNQV-TDLKPLANLTTLERL  177 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCC-CCCGGGTTCTTCCEE
T ss_pred             cccccccccccccccccccccc-ccchhhhhHHhhhhhhh-hcccccccccccccccccccccc-cCCccccCCCCCCEE
Confidence            4788899999999988887654 47888999999999987 4455543  57788999988654 34442  23345556


Q ss_pred             eecCc
Q 046349           82 DLSCN   86 (119)
Q Consensus        82 ~~~~~   86 (119)
                      ++.+|
T Consensus       178 ~ls~N  182 (199)
T d2omxa2         178 DISSN  182 (199)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            66554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.34  E-value=4.1e-07  Score=58.46  Aligned_cols=72  Identities=24%  Similarity=0.304  Sum_probs=56.0

Q ss_pred             hhccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCccccCcCc
Q 046349            5 ESLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSGLIFSSYE   80 (119)
Q Consensus         5 ~~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~~~~~l~~   80 (119)
                      ..+.++++++.+++++|.++..+ .+..+++|+.+++++|++. .++..  +++|+.|++++|. +..+|. +..+++
T Consensus       128 ~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~-~i~~l~~l~~L~~L~Ls~N~-i~~l~~-l~~l~~  201 (210)
T d1h6ta2         128 NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNH-ISDLRA-LAGLKN  201 (210)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCGGGTTCTTCCEEECCSSC-CCBCGG-GTTCTT
T ss_pred             ccccccccccccccccccccccc-ccccccccccccccccccc-ccccccCCCCCCEEECCCCC-CCCChh-hcCCCC
Confidence            45788999999999999998654 5788999999999999854 55542  6889999999875 556763 554443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.31  E-value=1.1e-08  Score=65.77  Aligned_cols=78  Identities=21%  Similarity=0.165  Sum_probs=57.3

Q ss_pred             hccCCCCCCEEeccCCCCccCChhhhcCCCCCEEeccCcccccccCCC--CCCCceeeccCCCCccccCc--ccc---Cc
Q 046349            6 SLGQLSTLEELFLVKNNFVRIPESIMQLSKLKFLNLSYSERLQSLLKL--PCSLLELDAHHCTVLDTLSG--LIF---SS   78 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~l~~n~~~~~lp~~--~~~L~~L~l~~~~~~~~lp~--~~~---~l   78 (119)
                      .+.++++|++|++++|.++.+|..+..+.+|+.|++++|+ +..++..  +.+|+.|++++|. +..++.  .+.   ++
T Consensus        65 ~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L  142 (198)
T d1m9la_          65 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKL  142 (198)
T ss_dssp             CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHHHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTC
T ss_pred             cccCCccccChhhccccccccccccccccccccccccccc-ccccccccccccccccccccch-hccccccccccCCCcc
Confidence            5788999999999999999998777777789999999998 5556543  5789999999864 334432  233   44


Q ss_pred             CceeecC
Q 046349           79 YEIDLSC   85 (119)
Q Consensus        79 ~~l~~~~   85 (119)
                      +.|.+.+
T Consensus       143 ~~L~L~~  149 (198)
T d1m9la_         143 EDLLLAG  149 (198)
T ss_dssp             SEEEECS
T ss_pred             ceeecCC
Confidence            4455543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.2e-07  Score=58.95  Aligned_cols=63  Identities=32%  Similarity=0.322  Sum_probs=48.5

Q ss_pred             cCCCCCCEEeccCCCCccCC---hhhhcCCCCCEEeccCcccccccCCC----CCCCceeeccCCCCcccc
Q 046349            8 GQLSTLEELFLVKNNFVRIP---ESIMQLSKLKFLNLSYSERLQSLLKL----PCSLLELDAHHCTVLDTL   71 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~~lP---~~~~~l~~L~~L~l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~l   71 (119)
                      ..+++|++|++++|.++.++   ..+..+++|+.|++++|. +..+++.    ...++.+++.+|......
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCc
Confidence            46888999999999998654   457789999999999998 5666653    346888999987665443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.6e-06  Score=57.02  Aligned_cols=37  Identities=32%  Similarity=0.249  Sum_probs=16.8

Q ss_pred             cCCCCCCEEeccCCCCc-cCChhhhcCCCCCEEeccCc
Q 046349            8 GQLSTLEELFLVKNNFV-RIPESIMQLSKLKFLNLSYS   44 (119)
Q Consensus         8 ~~l~~L~~L~ls~n~l~-~lP~~~~~l~~L~~L~l~~n   44 (119)
                      .++++|++|+++++.+. ..+..+..+++|+.|++++|
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             HhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            34444444444444444 33344444444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.2e-05  Score=51.96  Aligned_cols=81  Identities=19%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             ccCC-CCCCEEeccCCCCccCChhhhcCCCCCEEe-ccCcccccccCCC----CCCCceeeccCCCCccccCc-cccCcC
Q 046349            7 LGQL-STLEELFLVKNNFVRIPESIMQLSKLKFLN-LSYSERLQSLLKL----PCSLLELDAHHCTVLDTLSG-LIFSSY   79 (119)
Q Consensus         7 ~~~l-~~L~~L~ls~n~l~~lP~~~~~l~~L~~L~-l~~n~~~~~lp~~----~~~L~~L~l~~~~~~~~lp~-~~~~l~   79 (119)
                      +.++ ..++.+++++|.++.++.......++..+. +++|. +..+|..    +++|+.|++++|. +..+|. .+.++.
T Consensus       148 ~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~-l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~  225 (242)
T d1xwdc1         148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN-LEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLK  225 (242)
T ss_dssp             STTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT-CCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCC
T ss_pred             cccccccceeeecccccccccccccccchhhhccccccccc-cccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCc
Confidence            3444 368889999999998887766777776665 45555 6777763    5789999999865 556765 466766


Q ss_pred             ceeecCccCC
Q 046349           80 EIDLSCNFKL   89 (119)
Q Consensus        80 ~l~~~~~~~l   89 (119)
                      .|...+..++
T Consensus       226 ~L~~l~~~~l  235 (242)
T d1xwdc1         226 KLRARSTYNL  235 (242)
T ss_dssp             EEESSSEESS
T ss_pred             ccccCcCCCC
Confidence            6665554444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2e-05  Score=48.53  Aligned_cols=58  Identities=22%  Similarity=0.116  Sum_probs=43.7

Q ss_pred             ChhccCCCCCCEEeccCCCCccCCh-hhhcCCCCCEEeccCcccccccCC----------CCCCCceee
Q 046349            4 PESLGQLSTLEELFLVKNNFVRIPE-SIMQLSKLKFLNLSYSERLQSLLK----------LPCSLLELD   61 (119)
Q Consensus         4 P~~~~~l~~L~~L~ls~n~l~~lP~-~~~~l~~L~~L~l~~n~~~~~lp~----------~~~~L~~L~   61 (119)
                      +..+..+++|+.|++++|.++.+++ ......+|+.+++++|++......          .+++|+.||
T Consensus        84 ~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          84 SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             GTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            4456779999999999999998886 444556899999999986544332          256777775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=6.6e-05  Score=51.71  Aligned_cols=61  Identities=21%  Similarity=0.276  Sum_probs=41.0

Q ss_pred             ccCCCCCCEEeccCCCCc-----cCChhhhcCCCCCEEeccCccccc----ccCCC----CCCCceeeccCCCC
Q 046349            7 LGQLSTLEELFLVKNNFV-----RIPESIMQLSKLKFLNLSYSERLQ----SLLKL----PCSLLELDAHHCTV   67 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~-----~lP~~~~~l~~L~~L~l~~n~~~~----~lp~~----~~~L~~L~l~~~~~   67 (119)
                      ++.+++++.|+|++|.++     .+...+..+++|++||+++|++..    .+...    ..+|+.|++++|..
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i   96 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL   96 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCc
Confidence            345677888888888876     234556788888888888887421    12221    24688888888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0002  Score=47.46  Aligned_cols=83  Identities=18%  Similarity=0.064  Sum_probs=54.6

Q ss_pred             ccCCCCCCEEeccCCC-Cc-cCChhhhcCCCCCEEeccCccccc-ccCC---CCCCCceeeccCCCCccccCccccCcCc
Q 046349            7 LGQLSTLEELFLVKNN-FV-RIPESIMQLSKLKFLNLSYSERLQ-SLLK---LPCSLLELDAHHCTVLDTLSGLIFSSYE   80 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~-l~-~lP~~~~~l~~L~~L~l~~n~~~~-~lp~---~~~~L~~L~l~~~~~~~~lp~~~~~l~~   80 (119)
                      ..++++|++|++++|. ++ ..+..+.++++|++|++++|..+. .-..   ..++|+.|++.+|-.-+.++.-...++.
T Consensus       171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~  250 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH  250 (284)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTT
T ss_pred             ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcc
Confidence            3568999999999864 66 667789999999999999975321 1111   1468999999987333333332234445


Q ss_pred             eeecCccCCC
Q 046349           81 IDLSCNFKLD   90 (119)
Q Consensus        81 l~~~~~~~l~   90 (119)
                      +.+ +|..+.
T Consensus       251 L~i-~~~~ls  259 (284)
T d2astb2         251 LQI-NCSHFT  259 (284)
T ss_dssp             SEE-SCCCSC
T ss_pred             ccc-cCccCC
Confidence            554 344444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00022  Score=49.02  Aligned_cols=75  Identities=13%  Similarity=0.116  Sum_probs=52.1

Q ss_pred             CCCEEeccCCCCc--cCChhhhcCCCCCEEeccCcccc----cccCC---CCCCCceeeccCCCCcc----ccCccc---
Q 046349           12 TLEELFLVKNNFV--RIPESIMQLSKLKFLNLSYSERL----QSLLK---LPCSLLELDAHHCTVLD----TLSGLI---   75 (119)
Q Consensus        12 ~L~~L~ls~n~l~--~lP~~~~~l~~L~~L~l~~n~~~----~~lp~---~~~~L~~L~l~~~~~~~----~lp~~~---   75 (119)
                      +|+.||+++|+++  .+.+.+..+++++.|++++|.+.    ..++.   ..++|+.|++++|....    .+...+   
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5899999999998  45566788999999999999753    12332   24689999999876421    122222   


Q ss_pred             -cCcCceeecCc
Q 046349           76 -FSSYEIDLSCN   86 (119)
Q Consensus        76 -~~l~~l~~~~~   86 (119)
                       .+++.|++.+|
T Consensus        83 ~~~L~~L~L~~n   94 (460)
T d1z7xw1          83 SCKIQKLSLQNC   94 (460)
T ss_dssp             TCCCCEEECTTS
T ss_pred             CCCCCEEECCCC
Confidence             24566766655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.21  E-value=0.0011  Score=44.67  Aligned_cols=61  Identities=21%  Similarity=0.194  Sum_probs=33.3

Q ss_pred             ccCCCCCCEEeccCCCCcc-----CChhhhcCCCCCEEeccCcccccc--------cCCC-CCCCceeeccCCCC
Q 046349            7 LGQLSTLEELFLVKNNFVR-----IPESIMQLSKLKFLNLSYSERLQS--------LLKL-PCSLLELDAHHCTV   67 (119)
Q Consensus         7 ~~~l~~L~~L~ls~n~l~~-----lP~~~~~l~~L~~L~l~~n~~~~~--------lp~~-~~~L~~L~l~~~~~   67 (119)
                      +..+++|+.|++++|.+..     +...+...++|++|++++|.+...        +... ...|+.|++++|..
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcC
Confidence            4455666777777666641     334455666677777776663211        1110 13466777776543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.60  E-value=0.0033  Score=42.11  Aligned_cols=63  Identities=21%  Similarity=0.205  Sum_probs=41.7

Q ss_pred             hccCCCCCCEEeccCCCCcc------CChhhhcCCCCCEEeccCcccccc----cCC---CCCCCceeeccCCCCc
Q 046349            6 SLGQLSTLEELFLVKNNFVR------IPESIMQLSKLKFLNLSYSERLQS----LLK---LPCSLLELDAHHCTVL   68 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~~------lP~~~~~l~~L~~L~l~~n~~~~~----lp~---~~~~L~~L~l~~~~~~   68 (119)
                      .+...+.|+.|++++|.+..      +...+...++|+.|++++|.+...    +..   ..++|+.|++++|...
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            34556788888888888762      233466778888888888874211    221   1356888888887653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.09  E-value=0.0095  Score=36.09  Aligned_cols=16  Identities=6%  Similarity=0.135  Sum_probs=7.8

Q ss_pred             hhcCCCCCEEeccCcc
Q 046349           30 IMQLSKLKFLNLSYSE   45 (119)
Q Consensus        30 ~~~l~~L~~L~l~~n~   45 (119)
                      +...+.|+.|++++|.
T Consensus        40 L~~n~~L~~L~Ls~n~   55 (167)
T d1pgva_          40 ACNSKHIEKFSLANTA   55 (167)
T ss_dssp             HTTCSCCCEEECTTSC
T ss_pred             HhhCCccceeeccccc
Confidence            3344445555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.90  E-value=0.015  Score=35.17  Aligned_cols=61  Identities=18%  Similarity=0.186  Sum_probs=44.0

Q ss_pred             hccCCCCCCEEeccCCCCc-c----CChhhhcCCCCCEEeccCcccccc-cC---CC---CCCCceeeccCCC
Q 046349            6 SLGQLSTLEELFLVKNNFV-R----IPESIMQLSKLKFLNLSYSERLQS-LL---KL---PCSLLELDAHHCT   66 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~-~----lP~~~~~l~~L~~L~l~~n~~~~~-lp---~~---~~~L~~L~l~~~~   66 (119)
                      .+...++|+.|++++|.+. .    +-..+...+.|+.|++++|.+... +.   ..   -.+|+.|++++|.
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            4567788999999999987 2    223567789999999999985321 11   11   2569999998753

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.55  E-value=0.14  Score=30.39  Aligned_cols=60  Identities=15%  Similarity=0.140  Sum_probs=32.2

Q ss_pred             cCCCCCCEEeccC-CCCc--c---CChhhhcCCCCCEEeccCcccccccC----C---CCCCCceeeccCCCC
Q 046349            8 GQLSTLEELFLVK-NNFV--R---IPESIMQLSKLKFLNLSYSERLQSLL----K---LPCSLLELDAHHCTV   67 (119)
Q Consensus         8 ~~l~~L~~L~ls~-n~l~--~---lP~~~~~l~~L~~L~l~~n~~~~~lp----~---~~~~L~~L~l~~~~~   67 (119)
                      .+.++|++|++++ +.++  .   +-..+...++|+.|++++|.+...--    .   ...+++.+++.+|..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            3556777777776 3454  1   22234566777777777775321100    0   124566666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.99  E-value=0.32  Score=28.69  Aligned_cols=59  Identities=22%  Similarity=0.198  Sum_probs=40.6

Q ss_pred             hccCCCCCCEEeccCCCCc-c----CChhhhcCCCCCEEeccCcccccc----cCCC---CCCCceeeccC
Q 046349            6 SLGQLSTLEELFLVKNNFV-R----IPESIMQLSKLKFLNLSYSERLQS----LLKL---PCSLLELDAHH   64 (119)
Q Consensus         6 ~~~~l~~L~~L~ls~n~l~-~----lP~~~~~l~~L~~L~l~~n~~~~~----lp~~---~~~L~~L~l~~   64 (119)
                      .+...++|+.|++++|.+. .    +-..+...++++.+++++|.+...    +-..   .++++.+++..
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCC
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeecc
Confidence            4567889999999999987 2    223567789999999999974211    1111   35677766653