Citrus Sinensis ID: 046361

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MMPSCKCILPLVSVLLLSASGTTSISILNNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPELGLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVPMESMQLMLI
cccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccEEcccccccHHHHHHHHccccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccEEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccEEEccccccccccccccccccHHHHHHHHcccccEEEEEEEEEccccEEEccccccccEEEEcccccccEEEEEEEEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccEEEEEEEEEEEccHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHEHHHHHcccEEEEEcccccccccEEEEcccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHHHHHHHHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccEEEEc
mmpsckcilPLVSVLLLSASGTTSISILNNFIKCLtansevyipfsnfytpnnpsFLSVLESSAQNLRylvpsmpkpefiftpltesHLQAAVICSRHLRIHLRarsgghdyegvsyvsQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISeksnihgfaaglcpsvgigghitgggyGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAirgggggsFGIILAWKvklvpvpatVTVFTVSKTLEQGATEILYKWQQVADNLDEHLFIRVIIKLantgpkgkrtvttSYNALFLGDAERLLQVMHKkfpelgltrndcieksWIKSVLYiagypnytepeilLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLleghdpemiwnpyggmmskiseyeipfphrkgnlfkiqyltgwkdgdnrtatKHIEGIRRIYDymapyvsmfpraayvnyrdldlgmnkkcnTSYIEAATWGVKYFKENFNRLVRVKInvdpgnlfrheqsippvpmesmqlmli
MMPSCKCILPLVSVLLLSASGTTSISILNNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKWQQVADNLDEHLFIRVIIKlantgpkgkrtvTTSYNALFLGDAERLLQVMHKKFpelgltrndcieKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQyltgwkdgdnrtaTKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINvdpgnlfrheqsippvpmesMQLMLI
MMPSCKCIlplvsvlllsASGTTSISILNNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVgigghitgggygtMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRgggggSFGIILAWKVKLvpvpatvtvftvSKTLEQGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPELGLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVPMESMQLMLI
****CKCILPLVSVLLLSASGTTSISILNNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAI*******FGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPELGLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLF*******************
****CKC*LPLVSVLLLSASGTTSISILNNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPELGLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVPME***LMLI
MMPSCKCILPLVSVLLLSASGTTSISILNNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPELGLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVPMESMQLMLI
*MPSCKCILPLVSVLLLSASGTTSISILNNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPELGLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVPMESMQLMLI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMPSCKCILPLVSVLLLSASGTTSISILNNFIKCLTANSEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPELGLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVPMESMQLMLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query539 2.2.26 [Sep-21-2011]
A6P6W0545 Cannabidiolic acid syntha N/A no 0.968 0.957 0.450 1e-128
A6P6W1545 Cannabidiolic acid syntha N/A no 0.968 0.957 0.450 1e-128
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.949 0.939 0.455 1e-127
A6P6V9544 Cannabidiolic acid syntha N/A no 0.910 0.902 0.465 1e-127
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.946 0.935 0.456 1e-126
Q9SVG4570 Reticuline oxidase-like p no no 0.940 0.889 0.463 1e-123
P93479535 Reticuline oxidase OS=Pap N/A no 0.892 0.899 0.423 6e-99
P30986538 Reticuline oxidase OS=Esc N/A no 0.901 0.903 0.423 1e-97
O06997447 Uncharacterized FAD-linke yes no 0.729 0.879 0.287 1e-23
Q796Y5451 Uncharacterized FAD-linke no no 0.743 0.889 0.268 2e-21
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/551 (45%), Positives = 359/551 (65%), Gaps = 29/551 (5%)

Query: 1   MMPSCKCILPLVSVLLLSASGTTSISILN---NFIKCLTANSEVYIP--FSN---FYTPN 52
           M  S  C   +  ++    S    ISI N   NF+KC +     YIP   +N    YT +
Sbjct: 1   MKCSTFCFWYVCKIIFFFLSFNIQISIANPQENFLKCFSQ----YIPTNVTNAKLVYTQH 56

Query: 53  NPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDY 112
           +  ++S+L S+ QNLR+   + PKP  I TPL  SH+Q  ++CS+ + + +R RSGGHD 
Sbjct: 57  DQFYMSILNSTIQNLRFTSDTTPKPLVIITPLNVSHIQGTILCSKKVGLQIRTRSGGHDA 116

Query: 113 EGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAG 172
           EG+SY+SQ+  PF ++DL  + S+++D++++TAWV+AGAT+GE+YY I+E +    F AG
Sbjct: 117 EGMSYISQV--PFVIVDLRNMHSVKIDVHSQTAWVEAGATLGEVYYWINENNENLSFPAG 174

Query: 173 LCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGG 232
            CP+VG GGH +GGGYG +MR YGLAADN++DA +V+  G++LDR++MGEDLFWAIRGGG
Sbjct: 175 YCPTVGAGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGG 234

Query: 233 GGSFGIILAWKVKLVPVPATVTVFTVSKTLE-QGATEILYKWQQVADNLDEH--LFIRVI 289
           G +FGII AWK++LV VP+  T+F+V K +E     +++ KWQ +A   ++   LF   I
Sbjct: 235 GENFGIIAAWKIRLVAVPSMSTIFSVKKNMEIHELVKLVNKWQNIAYMYEKELLLFTHFI 294

Query: 290 IK-LANTGPKGKRTVTTSYNALFLGDAERLLQVMHKKFPELGLTRNDCIEKSWIKSVLYI 348
            + + +   K K T+ + ++++F G  + L+ +M+K FPELG+ + DC + SWI ++++ 
Sbjct: 295 TRNITDNQGKNKTTIHSYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKQLSWIDTIIFY 354

Query: 349 AGYPNYT----EPEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEGH--DPEM 402
           +G  NY     + EILL+     K+ F  K D+VK+PI ET +  + E L E        
Sbjct: 355 SGVVNYNTTYFKKEILLDRSGGRKAAFSIKLDYVKKPIPETAMVTILEKLYEEDVGVGMF 414

Query: 403 IWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGW-KDGDNRTATKHIEGIRRIYDYMAP 461
           ++ PYGG+M +ISE  IPFPHR G +++I Y+  W K  DN    KHI  IR +Y++  P
Sbjct: 415 VFYPYGGIMDEISESAIPFPHRAGIMYEIWYIASWEKQEDNE---KHINWIRNVYNFTTP 471

Query: 462 YVSMFPRAAYVNYRDLDLG-MNKKCNTSYIEAATWGVKYFKENFNRLVRVKINVDPGNLF 520
           YVS  PR AY+NYRDLDLG  N +   +Y +A  WG KYF +NFNRLV+VK  VDP N F
Sbjct: 472 YVSQNPRMAYLNYRDLDLGKTNFESPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPDNFF 531

Query: 521 RHEQSIPPVPM 531
           R+EQSIPP+P+
Sbjct: 532 RNEQSIPPLPL 542
Has no cannabidiolic acid synthase activity.
Cannabis sativa (taxid: 3483)
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
356533127543 PREDICTED: reticuline oxidase-like prote 0.968 0.961 0.702 0.0
356533129540 PREDICTED: reticuline oxidase-like prote 0.961 0.959 0.701 0.0
255564335548 Reticuline oxidase precursor, putative [ 0.938 0.923 0.730 0.0
147846530539 hypothetical protein VITISV_003756 [Viti 0.977 0.977 0.696 0.0
225444135539 PREDICTED: reticuline oxidase-like prote 0.977 0.977 0.693 0.0
356555926543 PREDICTED: reticuline oxidase-like prote 0.968 0.961 0.690 0.0
224056801507 predicted protein [Populus trichocarpa] 0.938 0.998 0.720 0.0
224115654545 predicted protein [Populus trichocarpa] 0.990 0.979 0.697 0.0
255564331548 Reticuline oxidase precursor, putative [ 0.942 0.927 0.729 0.0
449433537549 PREDICTED: reticuline oxidase-like prote 0.923 0.907 0.720 0.0
>gi|356533127|ref|XP_003535119.1| PREDICTED: reticuline oxidase-like protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/524 (70%), Positives = 440/524 (83%), Gaps = 2/524 (0%)

Query: 14  VLLLSASGTTSISILNNFIKCLTANSEVYIPF-SNFYTPNNPSFLSVLESSAQNLRYLVP 72
           +LLLS S   S S+  NF++CL+  S+   PF ++ YTP N SF  +LESSAQNLRYLVP
Sbjct: 12  ILLLSVSLAASASLEENFVQCLSFYSDKAAPFYASIYTPQNASFNKILESSAQNLRYLVP 71

Query: 73  SMPKPEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAK 132
           S PKPE IFTPLT+SH+Q AV CS+ L IHLR RSGGHDYEG+SYVS++E+PF ++DL+K
Sbjct: 72  SAPKPELIFTPLTDSHVQVAVTCSKKLGIHLRIRSGGHDYEGLSYVSEVESPFIIVDLSK 131

Query: 133 LRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMM 192
           LR+I+VDI + TAW+QAGATIGE+YYRI EKS++HGF AGLC S+G+GGHITGG YG+MM
Sbjct: 132 LRAIDVDIEDNTAWIQAGATIGEVYYRIYEKSSVHGFPAGLCTSLGVGGHITGGAYGSMM 191

Query: 193 RKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPAT 252
           RKYGL ADNVVDARIVDA G+ILDREAMGEDLFWAIRGGGG SFGI+L WK+KLVPVP T
Sbjct: 192 RKYGLGADNVVDARIVDANGQILDREAMGEDLFWAIRGGGGASFGILLWWKIKLVPVPET 251

Query: 253 VTVFTVSKTLEQGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGKRTVTTSYNALFL 312
           VTVFTV+++LEQ AT+IL++WQ+VA  +DE LFIRVII+ A  G K +RT+TTSYNA FL
Sbjct: 252 VTVFTVTRSLEQDATKILHRWQEVAPYIDEDLFIRVIIQPATVGNKTERTITTSYNAQFL 311

Query: 313 GDAERLLQVMHKKFPELGLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFK 372
           G A+RLLQVM + FPELGLT+ DC+E SWIKSVLYIAGYPN T PE+LL+ +S FK+YFK
Sbjct: 312 GGADRLLQVMKESFPELGLTKKDCLETSWIKSVLYIAGYPNDTPPEVLLQGKSTFKNYFK 371

Query: 373 AKSDFVKEPIAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQ 432
           AKSDFV++PI ET LEGLW+ LLE   P MIWNPYGGMMSK SE +IPFPHR G L+KIQ
Sbjct: 372 AKSDFVRDPIPETGLEGLWQRLLEEDSPLMIWNPYGGMMSKFSESDIPFPHRNGTLYKIQ 431

Query: 433 YLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEA 492
           YLT W+DGD + A+KH + IR++Y+YM PYVS FPR AYVNYRDLDLGMNKK +TSYI+A
Sbjct: 432 YLTLWQDGD-KNASKHEDWIRKLYNYMTPYVSKFPREAYVNYRDLDLGMNKKNSTSYIQA 490

Query: 493 ATWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVPMESMQL 536
             WG  YFK+NFNRLV++K  VDP N+FRHEQSIPP+P+ SM+L
Sbjct: 491 TAWGNMYFKDNFNRLVKIKTKVDPDNVFRHEQSIPPLPVSSMRL 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356533129|ref|XP_003535120.1| PREDICTED: reticuline oxidase-like protein-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|255564335|ref|XP_002523164.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537571|gb|EEF39195.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147846530|emb|CAN81654.1| hypothetical protein VITISV_003756 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444135|ref|XP_002268361.1| PREDICTED: reticuline oxidase-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555926|ref|XP_003546280.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224056801|ref|XP_002299030.1| predicted protein [Populus trichocarpa] gi|222846288|gb|EEE83835.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115654|ref|XP_002317089.1| predicted protein [Populus trichocarpa] gi|222860154|gb|EEE97701.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564331|ref|XP_002523162.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537569|gb|EEF39193.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449433537|ref|XP_004134554.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.922 0.930 0.602 4.6e-160
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.927 0.939 0.587 2e-159
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.936 0.940 0.580 2.6e-157
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.977 0.972 0.543 4.8e-149
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.975 0.972 0.532 1.2e-145
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.920 0.941 0.464 9.2e-123
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.903 0.915 0.476 1.3e-121
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.931 0.943 0.470 2.2e-121
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.884 0.9 0.466 6.9e-118
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.905 0.925 0.444 1.3e-116
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1559 (553.9 bits), Expect = 4.6e-160, P = 4.6e-160
 Identities = 305/506 (60%), Positives = 369/506 (72%)

Query:    26 SILNNFIKCLTANSEVYIPF-SNFYTP--NNPSFLSVLESSAQNLRYLVPSMPKPEFIFT 82
             +I  +F+ CL  NS+   P  S+F+T   N  SF   LE+SAQNLRYL+PS PKPEFIF 
Sbjct:    30 TIQQDFVMCLVDNSDASFPMDSSFFTHDLNASSFKLALETSAQNLRYLMPSNPKPEFIFE 89

Query:    83 PLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINN 142
             PL E+H+QAAV+C++ L++HLR RSGGHDYEG+SYVS++ET F ++DL+KLR I VDI +
Sbjct:    90 PLYETHVQAAVLCAKKLKLHLRLRSGGHDYEGLSYVSEMETAFVIVDLSKLRQISVDIES 149

Query:   143 KTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNV 202
              +AWV AGA+IGE+YYRI EKS IHGF AGLC S+             MMRK+GL ADNV
Sbjct:   150 NSAWVHAGASIGEVYYRIQEKSKIHGFPAGLCTSLGIGGHIIGGAYGSMMRKFGLGADNV 209

Query:   203 VDARIVDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTL 262
             +DARIVDA G+IL+R AMGED+FWAIR     SFG+ILAWK+KL            ++TL
Sbjct:   210 LDARIVDADGKILNRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPEIVTVFTVTRTL 269

Query:   263 EQGATEILYKWQQVADNLDEHLFIRVIIKLANTGPKGK-RTVTTSYNALFLGDAERLLQV 321
             EQ  T++LYKWQQVAD LDE LFIRVII+  +  PK K RT++TSY   FLGDA RLLQV
Sbjct:   270 EQDGTKLLYKWQQVADKLDEDLFIRVIIQPTSKTPKSKERTISTSYQGQFLGDANRLLQV 329

Query:   322 MHKKFPELGLTRNDCIEKSWIKSVLYIAGYPNYTEPEILLEERSLFKSYFKAKSDFVKEP 381
             M + FP+LGLT+ DC+E SWIKSV+YIAG+P+    E LL+ +SLFK+YFKAKSD+V+EP
Sbjct:   330 MQRSFPQLGLTKKDCLETSWIKSVMYIAGFPSTAPSEALLDGKSLFKNYFKAKSDYVEEP 389

Query:   382 IAETVLEGLWEMLLEGHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTGWKDGD 441
             I    LEGLWE LLE   P  IWNPYGGMM+KI E E PFPHR G LFKIQ+LT W+DG 
Sbjct:   390 IPVEGLEGLWEKLLEEDSPLTIWNPYGGMMAKIPETETPFPHRSGTLFKIQWLTLWQDGK 449

Query:   442 NRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLGMNKKCNTSYIEAATWGVKYFK 501
                A KH+  +R +Y YM  YVS  PR+AYVNYRDLDLGMN K +    +A  WG +YFK
Sbjct:   450 TSEA-KHMGWMREMYSYMEQYVSKSPRSAYVNYRDLDLGMNGKGS----DAREWGNRYFK 504

Query:   502 ENFNRLVRVKINVDPGNLFRHEQSIP 527
              NF RLV +K   DP N FRHEQSIP
Sbjct:   505 GNFERLVEIKAKFDPENFFRHEQSIP 530
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029820001
SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (539 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 4e-29
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 3e-28
pfam0803145 pfam08031, BBE, Berberine and berberine like 1e-17
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 2e-07
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 7e-07
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 3e-04
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 0.003
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  111 bits (280), Expect = 4e-29
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 77  PEFIFTPLTESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKL-RS 135
           P  +  P +E  + A V  +    + +  R GG    G + +    T   +LDL++L   
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVL----TGGVVLDLSRLNGI 56

Query: 136 IEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKY 195
           +E+D  + TA V+AG T+G+L   ++ K  + G   G      +GG I   G G    +Y
Sbjct: 57  LEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERY 116

Query: 196 GLAADNVVDARIVDARGRILD 216
           GL  DNV+   +V A G ++ 
Sbjct: 117 GLTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 539
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.98
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK11183564 D-lactate dehydrogenase; Provisional 99.92
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.9
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.9
KOG1232511 consensus Proteins containing the FAD binding doma 99.89
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.86
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.83
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.83
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.83
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.83
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.82
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.77
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.67
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.66
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.61
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.58
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.56
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.51
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.48
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.31
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.97
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.24
PRK09799258 putative oxidoreductase; Provisional 94.84
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 94.21
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.65
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 92.21
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 91.46
PLN00107257 FAD-dependent oxidoreductase; Provisional 91.41
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 89.61
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 87.82
PLN02906 1319 xanthine dehydrogenase 84.34
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 81.97
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 81.84
PLN00192 1344 aldehyde oxidase 81.34
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=8e-39  Score=341.25  Aligned_cols=193  Identities=20%  Similarity=0.262  Sum_probs=172.4

Q ss_pred             cccCCCCCCCceEEEecCCHHHHHHHHHHHH--hcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCc------E-E
Q 046361           67 LRYLVPSMPKPEFIFTPLTESHLQAAVICSR--HLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRS------I-E  137 (539)
Q Consensus        67 ~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~--~~~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~------v-~  137 (539)
                      ..|.......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|++...    ++++|||++||+      + +
T Consensus        55 ~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~----~GivIdms~Ln~i~~~~~ii~  130 (525)
T PLN02441         55 KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAP----GGVVVDMRSLRGGVRGPPVIV  130 (525)
T ss_pred             cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCC----CeEEEECCCCCCcCccCceEE
Confidence            3587777789999999999999999999997  6699999999999999988765    589999999999      4 7


Q ss_pred             EeCCCCEEEEeCCCCHHHHHHHHHhcCCceEee-cCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCceec
Q 046361          138 VDINNKTAWVQAGATIGELYYRISEKSNIHGFA-AGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRILD  216 (539)
Q Consensus       138 vd~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~  216 (539)
                      +|.+..+|+|++|++|.++.+++.++|+  +.+ .+.+..++|||.++++|.|..+.+||..+|+|+++|||+++|++++
T Consensus       131 vd~~~~~VtV~aG~~~~dv~~~l~~~Gl--aP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~  208 (525)
T PLN02441        131 VSGDGPYVDVSGGELWIDVLKATLKHGL--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVT  208 (525)
T ss_pred             EcCCCCEEEEcCCCCHHHHHHHHHHCCC--ccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEE
Confidence            8889999999999999999999999974  332 3666789999999999999999999999999999999999999997


Q ss_pred             -ccCCCcchhhhhhcccCCCceEEEEEEEEEEeeCCeEEEEEEEecchhhH
Q 046361          217 -REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLEQGA  266 (539)
Q Consensus       217 -~~~~~~dLf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~  266 (539)
                       ++.+|+|||||++||+ |+|||||++++|++|+|+...++.+.+...+.+
T Consensus       209 ~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~  258 (525)
T PLN02441        209 CSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSDFSTF  258 (525)
T ss_pred             eCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCCHHHH
Confidence             6678999999999998 899999999999999999877777777654433

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-119
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-113
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-108
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 5e-93
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-93
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-93
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-92
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 8e-92
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-91
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-91
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 8e-17
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 4e-16
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 6e-16
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 4e-14
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 1e-11
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 4e-09
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 5e-09
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 7e-08
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  426 bits (1095), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/516 (42%), Positives = 322/516 (62%), Gaps = 22/516 (4%)
Query: 30  NFIKCLTAN--SEVYIPFSNFYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTES 87
           NF+KC + +  + V  P    YT ++  ++S+L S+ QNLR++  + PKP  I TP   S
Sbjct: 6   NFLKCFSKHIPNNVANP-KLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 88  HLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWV 147
           H+QA ++CS+ + + +R RSGGHD EG+SY+SQ+  PF ++DL  + SI++D++++TAWV
Sbjct: 65  HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQTAWV 122
Query: 148 QAGATIGELYYRISEKSNIHGFAAGLCPSVXXXXXXXXXXXXXMMRKYGLAADNVVDARI 207
           +AGAT+GE+YY I+EK+    F  G CP+V             +MR YGLAADN++DA +
Sbjct: 123 EAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHL 182
Query: 208 VDARGRILDREAMGEDLFWAIRXXXXXSFGIILAWKVKLXXXXXXXXXXXXSKTLE-QGA 266
           V+  G++LDR++MGEDLFWAIR     +FGII AWK+KL             K +E  G 
Sbjct: 183 VNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGL 242
Query: 267 TEILYKWQQVADNLDEHLFIR---VIIKLANTGPKGKRTVTTSYNALFLGDAERLLQVMH 323
            ++  KWQ +A   D+ L +    +   + +   K K TV   ++++F G  + L+ +M+
Sbjct: 243 VKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMN 302
Query: 324 KKFPELGLTRNDCIEKSWIKSVLYIAGYPNYT----EPEILLEERSLFKSYFKAKSDFVK 379
           K FPELG+ + DC E SWI + ++ +G  N+     + EILL+  +  K+ F  K D+VK
Sbjct: 303 KSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVK 362
Query: 380 EPIAETVLEGLWEMLLE---GHDPEMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYLTG 436
           +PI ET +  + E L E   G    +++ PYGG+M +ISE  IPFPHR G ++++ Y   
Sbjct: 363 KPIPETAMVKILEKLYEEDVGAGMYVLY-PYGGIMEEISESAIPFPHRAGIMYELWYTAS 421
Query: 437 W-KDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG-MNKKCNTSYIEAAT 494
           W K  DN    KHI  +R +Y++  PYVS  PR AY+NYRDLDLG  N     +Y +A  
Sbjct: 422 WEKQEDNE---KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI 478
Query: 495 WGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVP 530
           WG KYF +NFNRLV+VK  VDP N FR+EQSIPP+P
Sbjct: 479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-173
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-173
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-172
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-171
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-169
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-163
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-116
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 8e-47
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-35
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 3e-22
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 3e-21
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 2e-17
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 9e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 2e-10
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 7e-10
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 2e-09
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 2e-07
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 9e-05
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  582 bits (1502), Expect = 0.0
 Identities = 233/517 (45%), Positives = 340/517 (65%), Gaps = 16/517 (3%)

Query: 26  SILNNFIKCLTANSEVYIPFSNF-YTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPL 84
           +   NF+KC + +    +      YT ++  ++S+L S+ QNLR++  + PKP  I TP 
Sbjct: 2   NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61

Query: 85  TESHLQAAVICSRHLRIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKT 144
             SH+QA ++CS+ + + +R RSGGHD EG+SY+S  + PF ++DL  + SI++D++++T
Sbjct: 62  NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYIS--QVPFVVVDLRNMHSIKIDVHSQT 119

Query: 145 AWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVD 204
           AWV+AGAT+GE+YY I+EK+    F  G CP+VG+GGH +GGGYG +MR YGLAADN++D
Sbjct: 120 AWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179

Query: 205 ARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLE- 263
           A +V+  G++LDR++MGEDLFWAIRGGGG +FGII AWK+KLV VP+  T+F+V K +E 
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239

Query: 264 QGATEILYKWQQVADNLDEHLFIRVIIK---LANTGPKGKRTVTTSYNALFLGDAERLLQ 320
            G  ++  KWQ +A   D+ L +        + +   K K TV   ++++F G  + L+ 
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299

Query: 321 VMHKKFPELGLTRNDCIEKSWIKSVLYIAGYPNY----TEPEILLEERSLFKSYFKAKSD 376
           +M+K FPELG+ + DC E SWI + ++ +G  N+     + EILL+  +  K+ F  K D
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLD 359

Query: 377 FVKEPIAETVLEGLWEMLLEGHDP--EMIWNPYGGMMSKISEYEIPFPHRKGNLFKIQYL 434
           +VK+PI ET +  + E L E        +  PYGG+M +ISE  IPFPHR G ++++ Y 
Sbjct: 360 YVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYT 419

Query: 435 TGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG-MNKKCNTSYIEAA 493
             W+  ++    KHI  +R +Y++  PYVS  PR AY+NYRDLDLG  N     +Y +A 
Sbjct: 420 ASWEKQED--NEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQAR 477

Query: 494 TWGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVP 530
            WG KYF +NFNRLV+VK  VDP N FR+EQSIPP+P
Sbjct: 478 IWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.95
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.9
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.88
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.84
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.77
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.13
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.38
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.09
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 93.67
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 93.67
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 92.86
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 91.88
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 88.95
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 85.07
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=1.3e-88  Score=731.49  Aligned_cols=503  Identities=47%  Similarity=0.902  Sum_probs=429.3

Q ss_pred             ccccHHHHhhhcCCCCCCCce-eecCCCcChHHHHhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHhcCCeEEE
Q 046361           27 ILNNFIKCLTANSEVYIPFSN-FYTPNNPSFLSVLESSAQNLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHLRIHLRA  105 (539)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~-v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v  105 (539)
                      ++++|.+||+..+..+.++++ |++|+|+.|+.++.++.+|.||+.+....|.+||+|+|++||+++|++|+++++||++
T Consensus         3 ~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v   82 (518)
T 3vte_A            3 PRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT   82 (518)
T ss_dssp             HHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEE
Confidence            457899999988777778888 9999999999998888999999998999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEeCCCCHHHHHHHHHhcCCceEeecCCCCcceeccccCC
Q 046361          106 RSGGHDYEGVSYVSQIETPFFLLDLAKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITG  185 (539)
Q Consensus       106 ~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v~vd~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~~  185 (539)
                      ||||||+.|.+...  ..++++|||++||+|++|+++++|+||||+++.+|+++|.++|+++.+++|.|+++||||++++
T Consensus        83 rggGh~~~g~~~~~--~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~g  160 (518)
T 3vte_A           83 RSGGHDAEGMSYIS--QVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSG  160 (518)
T ss_dssp             ESSCCCTTCTTTCC--SSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHT
T ss_pred             ECCCcCCCCCccCC--CCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCC
Confidence            99999998877432  1268999999999999999999999999999999999999998789999999999999999999


Q ss_pred             CccCCCcccccccccceeEEEEEccCCceecccCCCcchhhhhhcccCCCceEEEEEEEEEEeeCCeEEEEEEEecch-h
Q 046361          186 GGYGTMMRKYGLAADNVVDARIVDARGRILDREAMGEDLFWAIRGGGGGSFGIILAWKVKLVPVPATVTVFTVSKTLE-Q  264 (539)
Q Consensus       186 gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~-~  264 (539)
                      ||+|+++++||+++|+|+++|||++||++++.+.+|+|||||+|||++|+|||||+++||++|.|+....|.+.+... +
T Consensus       161 Gg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~  240 (518)
T 3vte_A          161 GGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH  240 (518)
T ss_dssp             CCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHH
T ss_pred             CCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHH
Confidence            999999999999999999999999999999755568999999999855899999999999999999888888877654 5


Q ss_pred             hHHHHHHHHHHHhhcCCccceEEEEEEeccCC---CCCCceeEEEEEEEEeCCHHHHHHHhhccCccCCCCcccccccch
Q 046361          265 GATEILYKWQQVADNLDEHLFIRVIIKLANTG---PKGKRTVTTSYNALFLGDAERLLQVMHKKFPELGLTRNDCIEKSW  341 (539)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~~  341 (539)
                      .+.+++..|+++++.+|+++++.+.+...++.   ..+...+.+.+.++|+|+.+++.+.|.+.|++++....++.+++|
T Consensus       241 ~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w  320 (518)
T 3vte_A          241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSW  320 (518)
T ss_dssp             HHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecch
Confidence            67889999999999999999998887652211   111123467788999999999998888878888766677889999


Q ss_pred             HHHHHHHhcCCCC-CC---chhhhccccccccccccccccccCCCCHHHHHHHHHHHHcC--CCceEEEeecCCCCCCCC
Q 046361          342 IKSVLYIAGYPNY-TE---PEILLEERSLFKSYFKAKSDFVKEPIAETVLEGLWEMLLEG--HDPEMIWNPYGGMMSKIS  415 (539)
Q Consensus       342 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~i~~~~~~~~~~--~~~~i~~~~~GG~v~~v~  415 (539)
                      ++.+.+++.++.+ .+   ++.+.++....+.+||.||+|+.+++++++|+.+++++.+.  +.+.++++++||++++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~  400 (518)
T 3vte_A          321 IDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEIS  400 (518)
T ss_dssp             HHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSC
T ss_pred             hhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCC
Confidence            9988887765433 23   34444443334457889999998899999999999988763  357899999999999999


Q ss_pred             CCCCCCcccCCCeEEEEEEcccCCCCChhhHHHHHHHHHHHHhhcCcccCCCCcccccccCcccc-CCCCCCchhhhhhh
Q 046361          416 EYEIPFPHRKGNLFKIQYLTGWKDGDNRTATKHIEGIRRIYDYMAPYVSMFPRAAYVNYRDLDLG-MNKKCNTSYIEAAT  494 (539)
Q Consensus       416 ~~~tAfp~R~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Y~Ny~d~~~~-~~~~~~~~~~~~~~  494 (539)
                      .++||||||++.+|.+++.+.|.++  +.++++.+|++++++.|.|+.+..+.|+|+||+|.+++ .+..++.++..+..
T Consensus       401 ~~~TAf~hR~~~~~~~~~~~~w~~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~  478 (518)
T 3vte_A          401 ESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI  478 (518)
T ss_dssp             TTSSSCCCCTTCCEEEEEEEEECCT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHH
T ss_pred             CCCCcccccCcceEEEEEEEecCCc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhh
Confidence            9999999998558999999999765  34577889999999999998765668999999999876 32234456666778


Q ss_pred             hHHhhhhhcHHHHHHHHhhcCCCCCCccCCCCCCCcccc
Q 046361          495 WGVKYFKENFNRLVRVKINVDPGNLFRHEQSIPPVPMES  533 (539)
Q Consensus       495 ~~~~yyg~n~~RL~~IK~kyDP~~vF~~~qsi~~~~~~~  533 (539)
                      |++.|||+||+||++||+||||+|+|+++|||+|.+.+.
T Consensus       479 w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~~~  517 (518)
T 3vte_A          479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPHH  517 (518)
T ss_dssp             HHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCTTC
T ss_pred             HHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCCCC
Confidence            999999999999999999999999999999999987653
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 539
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 8e-17
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 1e-16
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 5e-05
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 3e-04
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 8e-04
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 76.9 bits (188), Expect = 8e-17
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 8/179 (4%)

Query: 76  KPEFIFTPLTESHLQAAV-ICSRH--LRIHLRARSGGHDYEGVSYV--SQIETPFFLLDL 130
            P  +  P +   L A +   +        +  R  GH   G ++     +     L D 
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 131 AKLRSIEVDINNKTAWVQAGATIGELYYRISEKSNIHGFAAGLCPSVGIGGHITGGGYGT 190
           A    I V  + +           ++      +             + +GG ++  G   
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISG 147

Query: 191 MMRKYGLAADNVVDARIVDARGRILD-REAMGEDLFWAIRGGGGGSFGIILAWKVKLVP 248
              ++G    NV++  ++   G ++   + +  DLF A+ GG G  FG+I   ++ + P
Sbjct: 148 QAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.98
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.83
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.83
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.8
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 95.12
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 94.03
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.77
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.58
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 93.35
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.09
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 84.02
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 81.86
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=4.8e-37  Score=291.79  Aligned_cols=177  Identities=16%  Similarity=0.265  Sum_probs=159.7

Q ss_pred             ccccCCCCCCCceEEEecCCHHHHHHHHHHHHhc---CCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCcE------
Q 046361           66 NLRYLVPSMPKPEFIFTPLTESHLQAAVICSRHL---RIHLRARSGGHDYEGVSYVSQIETPFFLLDLAKLRSI------  136 (539)
Q Consensus        66 n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~---~~~v~v~ggGh~~~g~s~~~~~~~~~ivIdl~~l~~v------  136 (539)
                      ...|....+..|.+|++|+|++||+++|++|+++   ++||++||+|||+.|.+...    ++++|||++||++      
T Consensus        19 ~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~----~~ividl~~l~~i~~~~~~   94 (206)
T d1w1oa2          19 STDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAP----GGVVVNMASLGDAAAPPRI   94 (206)
T ss_dssp             SCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCT----TSEEEEGGGGGCSSSSCSE
T ss_pred             EECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccC----CCEeeeccccceeeeceeE
Confidence            4456665677999999999999999999999997   68999999999999887655    6799999999985      


Q ss_pred             EEeCCCCEEEEeCCCCHHHHHHHHHhcCCceEee-cCCCCcceeccccCCCccCCCcccccccccceeEEEEEccCCcee
Q 046361          137 EVDINNKTAWVQAGATIGELYYRISEKSNIHGFA-AGLCPSVGIGGHITGGGYGTMMRKYGLAADNVVDARIVDARGRIL  215 (539)
Q Consensus       137 ~vd~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~~gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~  215 (539)
                      ++|++..+|+||||+++.||.++|.++|  +.++ .+....++|||++++||+|..+++||..+|+|+++|+|++||+++
T Consensus        95 ~id~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~  172 (206)
T d1w1oa2          95 NVSADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMV  172 (206)
T ss_dssp             EECTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEE
T ss_pred             EEecCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEE
Confidence            6899999999999999999999999997  4444 355677899999999999999999999999999999999999999


Q ss_pred             c-ccCCCcchhhhhhcccCCCceEEEEEEEEEEee
Q 046361          216 D-REAMGEDLFWAIRGGGGGSFGIILAWKVKLVPV  249 (539)
Q Consensus       216 ~-~~~~~~dLf~a~rG~~~g~~Givt~~~~k~~p~  249 (539)
                      + ++.+|+||||++||++ |+|||||+++||++|+
T Consensus       173 ~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         173 TCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             EECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            7 6677899999999998 8999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure