Citrus Sinensis ID: 046376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MQEVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRKGHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFFSP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHccccHHHHHHHHHHHHHHHccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHEEEEHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mqevqklqpnslddwlpltasrngntfSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHlaepvpgtrysRYMQVAKAAFGpklakslcvfpvwylsggTCIMLIITAGADLETLYKIMCGgiatceakslpgVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRKGHNLVLEiqgtlpsskfnpssqKMWRAVKISYMTIgmcsfplaLTGYWaygnkvtakeGLLSVFSQvhghdtsrgamGSIYLLQIINCLCQfqiyampafdslEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSvafpffpslapfmggltlpfkfsypclmynlikkpdqsgtLWWLNLGLGCFGIILSVMLVVATFWNLVTKgvhanffsp
Flexible Loop (DISEMBL)
mqevqklqpnslddwlPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRKGHNLVLEIqgtlpsskfnpssQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFFSP
Low Complexity Region (SEG)
MQEVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRKGHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFFSP
Disordered region (IsUnstruct)
*************DWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRKGHNLVLEIQGTLP********QKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFF**
Disordered Region (DISOPRED)
******************TASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRKGHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFFSP
Disordered Region (DISEMBL)
*********NSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRKGHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFFSP
Disordered Region (DISPRO)
***********LDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRKGHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFFS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQEVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRKGHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFFSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
Q9SX98	519	Lysine histidine transpor	yes	no	0.990	0.789	0.422	5e-94
Q84WE9	478	Lysine histidine transpor	no	no	0.961	0.832	0.417	5e-93
Q9FKS8	446	Lysine histidine transpor	no	no	0.961	0.892	0.291	6e-53
O22719	451	Lysine histidine transpor	no	no	0.903	0.829	0.310	9e-53
Q9SS86	455	Lysine histidine transpor	no	no	0.915	0.832	0.298	2e-52
Q9C733	453	Lysine histidine transpor	no	no	0.958	0.876	0.305	2e-50
Q9LRB5	441	Lysine histidine transpor	no	no	0.961	0.902	0.281	7e-49
Q9SR44	441	Lysine histidine transpor	no	no	0.929	0.873	0.283	5e-45
Q9C6M2	440	Lysine histidine transpor	no	no	0.949	0.893	0.278	3e-35
Q9C9J0	448	Lysine histidine transpor	no	no	0.932	0.861	0.257	3e-31

>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1

 Score =  345 bits (884), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 190/450 (42%), Positives = 264/450 (58%), Gaps = 40/450 (8%)

Query: 1   MQEVQKLQP-NSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGII 59
           ++EV  L   N  D WLP+T SRNGN     FH +++G+G QAL LPV FA LGW+WGI+
Sbjct: 72  LEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLPVAFAFLGWSWGIL 131

Query: 60  CLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTC 119
            L  A+ WQ+YT+W+LV L E VPG RY+RY+++A+AAFG +L   L +FP  YLS GT 
Sbjct: 132 SLTIAYCWQLYTLWILVQLHEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTA 191

Query: 120 IMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFS 179
             LI+  G  ++  ++I+CG +  C +  L  V W L+F  + IV+SQL PNLNS+   S
Sbjct: 192 TALILIGGETMKLFFQIVCGPL--CTSNPLTTVEWYLVFTSLCIVLSQL-PNLNSIAGLS 248

Query: 180 KTGTVTAVVYVTLLWALTIR-----------------------------------KGHNL 204
             G VTA+ Y T++W L++                                    +GHNL
Sbjct: 249 LIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAVLNALGIIAFAFRGHNL 308

Query: 205 VLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVF 264
           VLEIQ T+PS+  +P+   MWR  KISY  I +C FP+++ G+WAYGN +    G+L+  
Sbjct: 309 VLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGN-LMPSGGMLAAL 367

Query: 265 SQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYR 324
              H HD  RG + + +LL + +CL  FQIY+MPAFDS E  Y  +  + C   VR+ +R
Sbjct: 368 YAFHIHDIPRGLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNKPCSIWVRSGFR 427

Query: 325 FFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLG 384
            FF  +   + VA PF  SLA  +GGLTLP  F+YPC M+ LIKKP +    W+ + GLG
Sbjct: 428 VFFGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSFNWYFHWGLG 487

Query: 385 CFGIILSVMLVVATFWNLVTKGVHANFFSP 414
             G+  S+   +   W++VT G+   FF P
Sbjct: 488 WLGVAFSLAFSIGGIWSMVTNGLKLKFFKP 517

Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2

 Score =  341 bits (875), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 182/436 (41%), Positives = 251/436 (57%), Gaps = 38/436 (8%)

Query: 12  LDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYT 71
           +++WLP+T SR GN ++  FH++ SGIG+Q + LP  FA LGW WG I L   F W++YT
Sbjct: 48  VEEWLPITESRKGNVYTATFHLLCSGIGLQVILLPAAFAALGWVWGTIILTVGFVWKLYT 107

Query: 72  IWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLE 131
            WLLV L E VPG R SRY+++A A+FG KL K L +FPV YLSGG C +L+IT G  ++
Sbjct: 108 TWLLVQLHEAVPGIRISRYVRLAIASFGVKLGKLLGIFPVMYLSGGACTILVITGGKSIQ 167

Query: 132 TLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVT 191
            L +IM           L  V   L+F CIA+++SQ  PNLNS+   S  G    + Y T
Sbjct: 168 QLLQIMSDD----NTAPLTSVQCFLVFSCIAMIMSQF-PNLNSLFGVSLIGAFMGIAYCT 222

Query: 192 LLWALTIR---------------------------------KGHNLVLEIQGTLPSSKFN 218
           ++W L +                                  +G+NLVLEIQGTLPS   N
Sbjct: 223 VIWILPVASDSQRTQVSVSYATMDKSFVHIFNAIGLIALVYRGNNLVLEIQGTLPSDSKN 282

Query: 219 PSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMG 278
           PS + MWRAV IS+  + +C FPL    YWAYG+K+ A  G +  + +++  + S+ A  
Sbjct: 283 PSCKTMWRAVMISHALVAICMFPLTFAVYWAYGDKIPATGGPVGNYLKLYTQEHSKRAAC 342

Query: 279 SIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAF 338
            I+L  I +CLC + I  MPA D++E  YI KK++     VR   R F + +   ++V F
Sbjct: 343 FIHLTFIFSCLCSYPINLMPACDNIEMVYITKKKKPASIIVRMMLRVFLSLVCFTIAVGF 402

Query: 339 PFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVAT 398
           PF P LA  +G + L   F+YPC M+  IKKP +   +W  N+ +GC G  LSV+L+VA+
Sbjct: 403 PFLPYLAVLIGAIALLVTFTYPCFMWISIKKPQRKSPMWLFNVLVGCLGASLSVLLLVAS 462

Query: 399 FWNLVTKGVHANFFSP 414
              L  KG+HANFF P
Sbjct: 463 AMRLAQKGLHANFFRP 478

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  208 bits (530), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 217/450 (48%), Gaps = 52/450 (11%)

Query: 2   QEVQKL---QPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGI 58
           Q+ +KL   +   ++DWLP+T+SRN   + + FH V++ +G   L LP   + LGW  GI
Sbjct: 11  QDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGI 70

Query: 59  ICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGT 118
             L+ ++   +YT+W +V + E VPG R+ RY ++ + AFG KL   + V     +  G 
Sbjct: 71  AVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGV 130

Query: 119 CIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKF 178
           CI+ ++T G  L+  ++++C      + K +    + ++F  +  V+S L PN NS+   
Sbjct: 131 CIVYMVTGGKSLKKFHELVCD-----DCKPIKLTYFIMIFASVHFVLSHL-PNFNSISGV 184

Query: 179 SKTGTVTAVVYVTLLWALTIRKG----------------------------------HNL 204
           S    V ++ Y T+ WA +  KG                                  HN+
Sbjct: 185 SLAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNV 244

Query: 205 VLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVF 264
           VLEIQ T+PS+   PS   MWR V ++Y+ + +C FP+AL GY+ +GN V  ++ +L   
Sbjct: 245 VLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGV--EDNILMSL 302

Query: 265 SQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYR 324
            +          + +  +  +I+ +  +QIYAMP FD +E   + K   +    +R   R
Sbjct: 303 KK------PAWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVR 356

Query: 325 FFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWLNLGL 383
            F+      + + FPFF  L  F GG    P  +  PC+++  I KP +    WW N   
Sbjct: 357 NFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVC 416

Query: 384 GCFGIILSVMLVVATFWNLVTKGVHANFFS 413
             FG+ L V+  +     +V +     F+S
Sbjct: 417 IVFGLFLMVLSPIGGLRTIVIQAKGYKFYS 446

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score =  207 bits (528), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 134/432 (31%), Positives = 215/432 (49%), Gaps = 58/432 (13%)

Query: 2   QEVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICL 61
           Q++ + Q   L+DWLP+TASRN N + + FH V++ +G   L LP   + LGW  G++ L
Sbjct: 14  QDLVEDQSFELEDWLPITASRNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVL 73

Query: 62  LTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIM 121
           + ++   +YT W ++ + E   G R+ RY ++ +AAFG KL   + V     +    CI+
Sbjct: 74  ILSWVITLYTFWQMIEMHEMFEGKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIV 133

Query: 122 LIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT 181
            ++T G  L+ ++++  G     E + L    + L+F     V+S LL N NS+   S  
Sbjct: 134 YMVTGGESLKKIHQLSVG---DYECRKLKVRHFILIFASSQFVLS-LLKNFNSISGVSLV 189

Query: 182 GTVTAVVYVTLLWALTIRKG----------------------------------HNLVLE 207
             V ++ Y T+ W  ++ KG                                  HN+VLE
Sbjct: 190 AAVMSMSYSTIAWVASLTKGVANNVEYGYKRRNNTSVPLAFLGALGEMAFAYAGHNVVLE 249

Query: 208 IQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQV 267
           IQ T+PS+  NPS + MW+   ++Y+ +  C FP+AL G+W +GN V  +E +L      
Sbjct: 250 IQATIPSTPENPSKRPMWKGAIVAYIIVAFCYFPVALVGFWTFGNNV--EENIL------ 301

Query: 268 HGHDTSRGAMGSIYLLQ---IINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRV-RAAY 323
               T RG  G I +     II+ +  +Q+YAMP FD +E   + KK    P RV R   
Sbjct: 302 ---KTLRGPKGLIIVANIFVIIHLMGSYQVYAMPVFDMIE-SVMIKKWHFSPTRVLRFTI 357

Query: 324 RFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLW---WL 379
           R+ F      ++VA P F +L  F GG    P  +  PC+++ ++KKP +    W   W+
Sbjct: 358 RWTFVAATMGIAVALPHFSALLSFFGGFIFAPTTYFIPCIIWLILKKPKRFSLSWCINWI 417

Query: 380 NLGLGCFGIILS 391
            + LG   +I++
Sbjct: 418 CIILGVLVMIIA 429

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 214/425 (50%), Gaps = 46/425 (10%)

Query: 4   VQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLT 63
           V++ QP  L+DWLP+TASRN N + + FH V++ +G   L LP   + LGW  G++ L+ 
Sbjct: 14  VEEDQPFDLEDWLPITASRNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLIL 73

Query: 64  AFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLI 123
           ++   +YT+W ++ + E   G R+ RY ++ +AAFG KL   + V     +    CI+ +
Sbjct: 74  SWVITLYTLWQMIEMHEMFEGQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYM 133

Query: 124 ITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGT 183
           +T G  L+ ++ +  G    C    +   +  L+F     V+S LL N NS+   S    
Sbjct: 134 VTGGKSLKNVHDLALGDGDKCTKLRIQHFI--LIFASSQFVLS-LLKNFNSISGVSLVAA 190

Query: 184 VTAVVYVTLLWALTIRKG----------------------------------HNLVLEIQ 209
           V +V Y T+ W  ++RKG                                  HN+VLEIQ
Sbjct: 191 VMSVSYSTIAWVASLRKGATTGSVEYGYRKRTTSVPLAFLSALGEMAFAYAGHNVVLEIQ 250

Query: 210 GTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHG 269
            T+PS+  NPS + MW+   ++Y+ +  C FP+AL G+  +GN V  +E +L   ++   
Sbjct: 251 ATIPSTPENPSKRPMWKGAVVAYIIVAFCYFPVALVGFKTFGNSV--EESILESLTK--- 305

Query: 270 HDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTG 329
             T+   + ++++  +I+ L  +Q+YAMP FD +E   I        R +R   R+ F  
Sbjct: 306 -PTALVIVANMFV--VIHLLGSYQVYAMPVFDMIESVMIRIWHFSPTRVLRFTIRWTFVA 362

Query: 330 LISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGI 388
               ++V  P++ +L  F GG    P  +  PC+M+ ++KKP +    W +N     FG+
Sbjct: 363 ATMGIAVGLPYYSALLSFFGGFVFAPTTYFIPCIMWLILKKPKRFSLSWCMNWFCIIFGL 422

Query: 389 ILSVM 393
           +L ++
Sbjct: 423 VLMII 427

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 216/449 (48%), Gaps = 52/449 (11%)

Query: 2   QEVQKLQ-PNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIIC 60
             + +L+    +DDWLP+T+SRN   + + FH V++ +G   L LP   A LGW  GI  
Sbjct: 20  HRIDELERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAV 79

Query: 61  LLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCI 120
           L+ ++   +YT+W +V + E VPG R+ RY ++ + AFG +L   + V     +  G CI
Sbjct: 80  LILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCI 139

Query: 121 MLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSK 180
           + ++T G  L+  ++I C     C    L    + ++F     V+S L PN NS+   S 
Sbjct: 140 VYMVTGGQSLKKFHEIAC---QDCSPIRLS--FFIMIFASSHFVLSHL-PNFNSISGVSL 193

Query: 181 TGTVTAVVYVTLLWALTIRKG----------------------------------HNLVL 206
              V ++ Y T+ W  T  KG                                  HN+VL
Sbjct: 194 VAAVMSLSYSTIAWTATAAKGVQEDVQYGYKSGTTASTVLSFFTGLGGIAFAYAGHNVVL 253

Query: 207 EIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQ 266
           EIQ T+PS+  NPS   MWR V ++Y+ + +C FP+AL GY  +GN V     L+S+   
Sbjct: 254 EIQATIPSTPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVL-DNVLMSL--- 309

Query: 267 VHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRV-RAAYRF 325
               +T   A+ +  L  +++ +  +QI+AMP FD +E  ++ KK    P  V R   R 
Sbjct: 310 ----ETPVWAIATANLFVVMHVIGSYQIFAMPVFDMVE-TFLVKKLNFKPSTVLRFIVRN 364

Query: 326 FFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWLNLGLG 384
            +  L   + +  PFF  L  F GG    P  +  PC+M+ LI KP +    WW N    
Sbjct: 365 VYVALTMFIGIMIPFFGGLLAFFGGFAFAPTSYFLPCIMWLLIYKPKRFSLSWWTNWVCI 424

Query: 385 CFGIILSVMLVVATFWNLVTKGVHANFFS 413
             G++L ++  +     ++ +    +FFS
Sbjct: 425 VLGVVLMILSSIGGLRQIIIQSKDYSFFS 453

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  195 bits (495), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 126/447 (28%), Positives = 217/447 (48%), Gaps = 49/447 (10%)

Query: 2   QEVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICL 61
            EV   +  ++DDWLP+T+SRN   + + FH V++ +G   L LP   + LGW  G+  +
Sbjct: 9   SEVAAAKQKNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIM 68

Query: 62  LTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIM 121
           + ++   +YT+W +V + E VPG R  RY ++ + AFG KL   + V     +  G  I+
Sbjct: 69  VMSWIITLYTLWQMVEMHEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIV 128

Query: 122 LIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT 181
            ++T GA L+ +++++C      + K +    W ++F  +  V+S  LPN NS+   S  
Sbjct: 129 YMVTGGASLKKVHQLVCP-----DCKEIRTTFWIMIFASVHFVISH-LPNFNSISIISLA 182

Query: 182 GTVTAVVYVTLLWALTIRK----------------------------------GHNLVLE 207
             V ++ Y T+ WA ++ K                                  GHN+VLE
Sbjct: 183 AAVMSLTYSTIAWAASVHKGVHPDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLE 242

Query: 208 IQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQV 267
           IQ T+PS+   PS   MWR V ++Y+ + +C FP+A  GY+ +GN V   + +L    + 
Sbjct: 243 IQATIPSTPEMPSKVPMWRGVIVAYIVVAICYFPVAFLGYYIFGNSV--DDNILITLEK- 299

Query: 268 HGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFF 327
                   AM ++++  +I+ +  +QI+AMP FD LE   + K       ++R   R  +
Sbjct: 300 ---PIWLIAMANMFV--VIHVIGSYQIFAMPVFDMLETVLVKKMNFNPSFKLRFITRSLY 354

Query: 328 TGLISLLSVAFP-FFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCF 386
                ++++  P F   L  F G    P  +  PC+M+ ++KKP + G  W  N      
Sbjct: 355 VAFTMIVAICVPFFGGLLGFFGGFAFAPTTYYLPCIMWLVLKKPKRFGLSWTANWFCIIV 414

Query: 387 GIILSVMLVVATFWNLVTKGVHANFFS 413
           G++L+++  +     ++       FFS
Sbjct: 415 GVLLTILAPIGGLRTIIINAKTYKFFS 441

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1

 Score =  182 bits (461), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/448 (28%), Positives = 213/448 (47%), Gaps = 63/448 (14%)

Query: 8   QPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAW 67
           +  ++DDWLP+T+SRN   + + FH V++ +G   L LP   + LGW  G+  ++ ++  
Sbjct: 15  KQKNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLI 74

Query: 68  QIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAG 127
             YT+W +V + E VPG R+ RY ++ + AFG KL   + V     +  G  I+ ++T G
Sbjct: 75  TFYTLWQMVQMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGG 134

Query: 128 ADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAV 187
             L+ ++ ++C      + K++    W ++F  I  V++ L PN NS+   S    V ++
Sbjct: 135 KSLKKIHDLLC-----TDCKNIRTTYWIMIFASIHFVLAHL-PNFNSISIVSLAAAVMSL 188

Query: 188 VYVTLLWALTIRKG----------------------------------HNLVLEIQGTLP 213
            Y T+ WA +++KG                                  HN+VLEIQ T+P
Sbjct: 189 SYSTIAWATSVKKGVHPNVDYSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQATIP 248

Query: 214 SSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTS 273
           S+   PS   MW+ V ++Y+ + +C FP+A   Y+ +GN V   + +L    +       
Sbjct: 249 STPEKPSKIAMWKGVVVAYIVVAICYFPVAFVCYYIFGNSV--DDNILMTLEK------- 299

Query: 274 RGAMGSIYLLQIINCLC------QFQIYAMPAFDSLEFRYIFKKQQQCPR-RVRAAYRFF 326
                 I+L+ I N          +QIYAMP FD LE  ++ KK    P  ++R   R  
Sbjct: 300 -----PIWLIAIANAFVVVHVIGSYQIYAMPVFDMLE-TFLVKKMMFAPSFKLRFITRTL 353

Query: 327 FTGLISLLSVAFP-FFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGC 385
           +      +++  P F   L  F G    P  +  PC+M+  IKKP + G  W +N     
Sbjct: 354 YVAFTMFVAICIPFFGGLLGFFGGFAFAPTTYYLPCIMWLCIKKPKKYGLSWCINWFCIV 413

Query: 386 FGIILSVMLVVATFWNLVTKGVHANFFS 413
            G+IL+++  +     ++    +  FFS
Sbjct: 414 VGVILTILAPIGGLRTIIISAKNYEFFS 441

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 199/446 (44%), Gaps = 53/446 (11%)

Query: 5   QKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTA 64
           ++    S + W     SR    + + FH V++ IG   L LP   A LGW  G   L   
Sbjct: 11  KETDRKSGEKWTAEDPSRPAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPGTFVLAMT 70

Query: 65  FAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLII 124
           +   + T+W +V L E VPGTR+ RY+ + + AFGPKL   + +     +  G  I+ ++
Sbjct: 71  WGLTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMV 130

Query: 125 TAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTV 184
           T G  L+   +I C   +TC    +    W L F  +  ++SQL PN NSV   S    V
Sbjct: 131 TGGKCLKQFVEITC---STC--TPVRQSYWILGFGGVHFILSQL-PNFNSVAGVSLAAAV 184

Query: 185 TAVVYVTLLWALTIRKG----------------------------------HNLVLEIQG 210
            ++ Y T+ W  +I  G                                  H + LEIQ 
Sbjct: 185 MSLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVALEIQA 244

Query: 211 TLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGH 270
           T+PS+   PS   MW+ V  +Y+   +C FP+AL  YWA+G  V   + +L         
Sbjct: 245 TMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDV--DDNVL--------M 294

Query: 271 DTSRGA--MGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFT 328
           +  R A  + +  L+ +++ +  +Q++AMP FD LE   + K   +    +R   R  + 
Sbjct: 295 NLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTRTIYV 354

Query: 329 GLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFG 387
                + V+FPFF  L  F GG    P  F  P +M+ +IKKP +    W++N      G
Sbjct: 355 AFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWISIIVG 414

Query: 388 IILSVMLVVATFWNLVTKGVHANFFS 413
           + + +   +    N++      +F++
Sbjct: 415 VFIMLASTIGGLRNIIADSSTYSFYA 440

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2

 Score =  136 bits (343), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 209/438 (47%), Gaps = 52/438 (11%)

Query: 13  DDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTI 72
           +DWLP+TASR    + + FH V++ +G   L LP   + LGW  G++ ++ ++A   Y++
Sbjct: 26  NDWLPVTASREAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSL 85

Query: 73  WLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLET 132
           W +V L E VPG R  RY ++ + AFGPKL   + +     +   + I+  +T G  L+ 
Sbjct: 86  WQMVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKK 145

Query: 133 LYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTL 192
             +++   +     + +    + L F  + +V+SQ  P+ NS+   S    + + +Y  +
Sbjct: 146 FVELLFPNL-----EHIRQTYYILGFAALQLVLSQS-PDFNSIKIVSLLAALMSFLYSMI 199

Query: 193 LWALTIRKG-----------------------------------HNLVLEIQGTLPSSKF 217
               +I KG                                   H++VLEIQ T+PS+  
Sbjct: 200 ASVASIAKGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIPSTPE 259

Query: 218 NPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAM 277
            PS + MW+ V ++Y+ + +C   +A++GYWA+G  V   + L+S+       +     +
Sbjct: 260 VPSKKPMWKGVVVAYIIVIICYLFVAISGYWAFGAHVE-DDVLISL-------ERPAWLI 311

Query: 278 GSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPR-RVRAAYRFFFTGLISLLSV 336
            +   +  I+ +  +Q++AM  FD++E  Y+ K  +  P   +R   R  +  LI L++V
Sbjct: 312 AAANFMVFIHVIGSYQVFAMIVFDTIE-SYLVKTLKFTPSTTLRLVARSTYVALICLVAV 370

Query: 337 AFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLV 395
             PFF  L  F GGL      +  PC+++ ++K+P +    WW +      GI ++++  
Sbjct: 371 CIPFFGGLLGFFGGLVFSSTSYFLPCIIWLIMKRPKRFSAHWWCSWVAIVTGISIAILAP 430

Query: 396 VATFWNLVTKGVHANFFS 413
           +    +++        FS
Sbjct: 431 IGGMRHIILSARTYKLFS 448

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
224080717	442	lysine/histidine transporter [Populus tr	0.968	0.907	0.578	1e-140
297744505	530	unnamed protein product [Vitis vinifera]	0.992	0.775	0.508	1e-125
359474803	493	PREDICTED: lysine histidine transporter-	0.992	0.833	0.508	1e-125
147834017	493	hypothetical protein VITISV_027980 [Viti	0.992	0.833	0.504	1e-124
255575025	493	amino acid transporter, putative [Ricinu	0.985	0.827	0.505	1e-118
255539144	524	amino acid transporter, putative [Ricinu	0.987	0.780	0.477	1e-115
452593	518	ORF [Lilium longiflorum]	0.980	0.783	0.474	1e-115
225459826	515	PREDICTED: lysine histidine transporter-	0.980	0.788	0.463	1e-114
302141680	1030	unnamed protein product [Vitis vinifera]	0.980	0.394	0.463	1e-114
224061917	520	lysine/histidine transporter [Populus tr	0.985	0.784	0.455	1e-110

>gi|224080717|ref|XP_002306215.1| lysine/histidine transporter [Populus trichocarpa] gi|222849179|gb|EEE86726.1| lysine/histidine transporter [Populus trichocarpa]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/441 (57%), Positives = 305/441 (69%), Gaps = 40/441 (9%)

Query: 13  DDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTI 72
           + WLP+T SRNGNT ++VFH++SSGIGIQAL LPV F+ LGW WGIICL  AF WQ+YTI
Sbjct: 3   EAWLPITESRNGNTVTSVFHLLSSGIGIQALLLPVAFSILGWAWGIICLSLAFTWQLYTI 62

Query: 73  WLLVHLAEPVPG--TRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADL 130
           W+LV L E VPG  TRYSRY+Q+A AAFGPKL K L +FPV YLSG TCIMLII     +
Sbjct: 63  WVLVQLHESVPGIGTRYSRYLQLAIAAFGPKLGKLLAIFPVMYLSGSTCIMLIIKGAGVM 122

Query: 131 ETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYV 190
           E L+K+MC G ATC+AKSL G  W L+F C+AI ++Q  PNLNS+  FS  G ++A+ Y 
Sbjct: 123 ELLFKLMCEGGATCDAKSLTGAEWFLVFTCMAIALAQR-PNLNSIAGFSLVGAMSAIGYC 181

Query: 191 TLLWALTIRK-----------------------------------GHNLVLEIQGTLPSS 215
           TL+WAL I K                                   GHNLVLEIQGTLPSS
Sbjct: 182 TLIWALPISKDRPSGVSYDSRKGGSTMAGMFDVLNAIGIIVLAFRGHNLVLEIQGTLPSS 241

Query: 216 KFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRG 275
             NPS + MWR V +SY+ I MC FPLA+ G+WAYGNK+ +  G+L+ F Q HGHDTSR 
Sbjct: 242 LTNPSKRTMWRGVSVSYIIIAMCQFPLAIAGFWAYGNKIPSNGGMLTAFMQFHGHDTSRF 301

Query: 276 AMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLS 335
           A G +YLL +INCL  FQIYAMP FD+LEFRYI  K ++CP  VR  +R FF GL   ++
Sbjct: 302 AKGLVYLLVVINCLSSFQIYAMPVFDNLEFRYISMKNRRCPWWVRIGFRLFFGGLAFFIA 361

Query: 336 VAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSG--TLWWLNLGLGCFGIILSVM 393
           VA PF PSLAP +GG+TLP   +YPC M+ LIKKP Q G   LW LNLGLGC GI+LSV+
Sbjct: 362 VALPFLPSLAPLVGGITLPLTLAYPCFMWILIKKPHQKGHDALWCLNLGLGCLGIVLSVL 421

Query: 394 LVVATFWNLVTKGVHANFFSP 414
           LVVA  WNL  KG+HA+FF P
Sbjct: 422 LVVAAAWNLAIKGLHASFFKP 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744505|emb|CBI37767.3| unnamed protein product [Vitis vinifera]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/448 (50%), Positives = 291/448 (64%), Gaps = 37/448 (8%)

Query: 1   MQEVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIIC 60
           + + +K  P+  + WLP+T SR G  F++ FH+++SGIGIQA  LPV F+ LGW WGI C
Sbjct: 73  VSDSRKEVPSPQEGWLPITESRKGGAFTSAFHLLASGIGIQAFLLPVAFSKLGWFWGIAC 132

Query: 61  LLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCI 120
           LL AFAWQ+YT WLLV L EP PGTRYSRY+ ++  AFGPKL K L +FPV YLSGGTC+
Sbjct: 133 LLLAFAWQLYTKWLLVQLHEPGPGTRYSRYLHLSVVAFGPKLGKLLALFPVMYLSGGTCV 192

Query: 121 MLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSK 180
           MLI   G  +E L++ +CG  ++C A  L G  W ++F C+AI+V+QL PNLNS+   S 
Sbjct: 193 MLINYGGGSMELLFRTVCGD-SSCIANKLTGAEWFMVFTCLAIIVAQL-PNLNSMAGVSL 250

Query: 181 TGTVTAVVYVTLLWALTIRKG-----------------------------------HNLV 205
            G  TA+ Y T LW L+I KG                                   HN+V
Sbjct: 251 LGAATAISYCTFLWILSITKGRPAGVSYSPPEAESRMARIGEVLTAIGMIALAFRGHNVV 310

Query: 206 LEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFS 265
           LEIQGT+PS+  +PS + MWR V +S      C FPLA+ GYWAYGN++ A  GLLS FS
Sbjct: 311 LEIQGTMPSNPKHPSQEPMWRGVIVSCSITAACLFPLAIAGYWAYGNRIPANGGLLSAFS 370

Query: 266 QVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRF 325
           + HG +T +  M  IYLL ++N LC +QIYAMP FD+LEFRYI KK + C R VRAA R 
Sbjct: 371 EFHGQNTKKLVMRMIYLLIVVNSLCSYQIYAMPVFDNLEFRYISKKNKPCSRWVRAAIRV 430

Query: 326 FFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGC 385
           FF GL + ++VA  F  SL P +GG+ LP   +YPC M+  IKKP Q G +W+LNLGLGC
Sbjct: 431 FFGGLTTFIAVAVSFLGSLGPLIGGIALPLTLAYPCFMWIAIKKPRQYGAMWYLNLGLGC 490

Query: 386 FGIILSVMLVVATFWNLVTKGVHANFFS 413
            GIILSV+LV A  W +V KG+ A+FF+
Sbjct: 491 SGIILSVLLVAAAVWKIVDKGIDASFFN 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474803|ref|XP_003631535.1| PREDICTED: lysine histidine transporter-like 8-like [Vitis vinifera]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/448 (50%), Positives = 291/448 (64%), Gaps = 37/448 (8%)

Query: 1   MQEVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIIC 60
           + + +K  P+  + WLP+T SR G  F++ FH+++SGIGIQA  LPV F+ LGW WGI C
Sbjct: 36  VSDSRKEVPSPQEGWLPITESRKGGAFTSAFHLLASGIGIQAFLLPVAFSKLGWFWGIAC 95

Query: 61  LLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCI 120
           LL AFAWQ+YT WLLV L EP PGTRYSRY+ ++  AFGPKL K L +FPV YLSGGTC+
Sbjct: 96  LLLAFAWQLYTKWLLVQLHEPGPGTRYSRYLHLSVVAFGPKLGKLLALFPVMYLSGGTCV 155

Query: 121 MLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSK 180
           MLI   G  +E L++ +CG  ++C A  L G  W ++F C+AI+V+QL PNLNS+   S 
Sbjct: 156 MLINYGGGSMELLFRTVCGD-SSCIANKLTGAEWFMVFTCLAIIVAQL-PNLNSMAGVSL 213

Query: 181 TGTVTAVVYVTLLWALTIRKG-----------------------------------HNLV 205
            G  TA+ Y T LW L+I KG                                   HN+V
Sbjct: 214 LGAATAISYCTFLWILSITKGRPAGVSYSPPEAESRMARIGEVLTAIGMIALAFRGHNVV 273

Query: 206 LEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFS 265
           LEIQGT+PS+  +PS + MWR V +S      C FPLA+ GYWAYGN++ A  GLLS FS
Sbjct: 274 LEIQGTMPSNPKHPSQEPMWRGVIVSCSITAACLFPLAIAGYWAYGNRIPANGGLLSAFS 333

Query: 266 QVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRF 325
           + HG +T +  M  IYLL ++N LC +QIYAMP FD+LEFRYI KK + C R VRAA R 
Sbjct: 334 EFHGQNTKKLVMRMIYLLIVVNSLCSYQIYAMPVFDNLEFRYISKKNKPCSRWVRAAIRV 393

Query: 326 FFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGC 385
           FF GL + ++VA  F  SL P +GG+ LP   +YPC M+  IKKP Q G +W+LNLGLGC
Sbjct: 394 FFGGLTTFIAVAVSFLGSLGPLIGGIALPLTLAYPCFMWIAIKKPRQYGAMWYLNLGLGC 453

Query: 386 FGIILSVMLVVATFWNLVTKGVHANFFS 413
            GIILSV+LV A  W +V KG+ A+FF+
Sbjct: 454 SGIILSVLLVAAAVWKIVDKGIDASFFN 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834017|emb|CAN73165.1| hypothetical protein VITISV_027980 [Vitis vinifera]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/448 (50%), Positives = 288/448 (64%), Gaps = 37/448 (8%)

Query: 1   MQEVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIIC 60
           + + +K  P+  + WLP+T SR G   ++ FH++SSGIGIQA  LPV F+ LGW WGI C
Sbjct: 36  VSDSRKEVPSPQEGWLPITESRKGGAXTSAFHLLSSGIGIQAFLLPVAFSKLGWFWGIAC 95

Query: 61  LLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCI 120
           LL AFAWQ+YT WLLV L EP PG RYSRY+Q++  AFGPKL K L +FPV YLSGGTC+
Sbjct: 96  LLLAFAWQLYTKWLLVQLHEPGPGNRYSRYLQLSVVAFGPKLGKLLALFPVMYLSGGTCV 155

Query: 121 MLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSK 180
           MLI   G  +E L++ +CG  ++C A  L G  W ++F C+AI+V+QL PNLNS+   S 
Sbjct: 156 MLINYGGGSMELLFRTVCGD-SSCIANKLTGAEWFMVFTCLAIIVAQL-PNLNSMAGVSL 213

Query: 181 TGTVTAVVYVTLLWALTIRKG-----------------------------------HNLV 205
            G  TA+ Y   LW L+I KG                                   HN+V
Sbjct: 214 LGAATAISYCXFLWILSITKGRPAGVSYSPPEAESRMARIGEVLTAIGMIALAFRGHNVV 273

Query: 206 LEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFS 265
           LEIQGT+PS+  +PS + MWR V +S      C FPLA+ GYWAYGN++ A  GLLS  S
Sbjct: 274 LEIQGTMPSNPKHPSQEPMWRGVIVSCSITAACLFPLAIAGYWAYGNRIPANGGLLSALS 333

Query: 266 QVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRF 325
           + HG +T +  M  IYLL ++N LC +QIYAMP FD+LEFRYI KK + C R VRAA R 
Sbjct: 334 EFHGQNTKKLVMRMIYLLIVVNSLCSYQIYAMPVFDNLEFRYISKKNKPCSRWVRAAIRV 393

Query: 326 FFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGC 385
           FF GL + ++VA  F  SL P +GG+ LP   +YPC M+  IKKP Q G +W+LNLGLGC
Sbjct: 394 FFGGLTTFIAVAVSFLGSLGPLIGGIALPLTLAYPCFMWIAIKKPRQYGAMWYLNLGLGC 453

Query: 386 FGIILSVMLVVATFWNLVTKGVHANFFS 413
            GIILSV+LV A  W +V KG+ A+FF+
Sbjct: 454 SGIILSVLLVAAAVWKIVDKGIDASFFN 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575025|ref|XP_002528418.1| amino acid transporter, putative [Ricinus communis] gi|223532154|gb|EEF33960.1| amino acid transporter, putative [Ricinus communis]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/449 (50%), Positives = 292/449 (65%), Gaps = 41/449 (9%)

Query: 2   QEVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICL 61
             +   + N  D WLP+T SRNGNT +++FH++SSGIG QAL LPV F+TLGW+WGIICL
Sbjct: 50  DNISHAEANPQDAWLPVTESRNGNTCTSIFHLLSSGIGFQALLLPVAFSTLGWSWGIICL 109

Query: 62  LTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIM 121
             AF WQ+YTIWLL+HL E VPGTRYSRY+Q++  AFGPK+ K L +FPV YLSGGTC++
Sbjct: 110 SLAFGWQLYTIWLLLHLHEHVPGTRYSRYLQLSVVAFGPKIGKVLAIFPVMYLSGGTCVV 169

Query: 122 LIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT 181
           LIIT    +E L++     I   E+KSL G  W  +F C+AI+++Q  PNLNS+   S  
Sbjct: 170 LIITGSKIMELLFET----IHNSESKSLAGTGWFFVFTCLAIILAQR-PNLNSIAGISLI 224

Query: 182 GTVTAVVYVTLLWALTIRK------------------------------------GHNLV 205
             +TA  Y TL+W  T+ K                                    GHNL+
Sbjct: 225 AAITAFGYYTLIWVSTVSKDRPTGTSHSPLQAGRFDMARLSDILIALGIIMLSFRGHNLI 284

Query: 206 LEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFS 265
           LEIQGTLPSS  +PS + MWRAV ISY+ I MC FPL + G+WAYGNK+  K G +S+F 
Sbjct: 285 LEIQGTLPSSSKHPSYKPMWRAVLISYILIAMCLFPLVIVGFWAYGNKLPKKIGSMSMFL 344

Query: 266 QVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRF 325
           Q +  +  +    +++ L + NCL  FQIYA+P FD+LE RY   K ++C RR+R A R 
Sbjct: 345 QFYSQNALKSIKITLHSLVLANCLSSFQIYAVPVFDNLELRYTSIKNKRCSRRIRTALRL 404

Query: 326 FFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGC 385
           FF GL   ++VAFPF PSLA  +GG+ LP  F YPC M+  IKKPD+   +WW NLGLGC
Sbjct: 405 FFGGLAFFVAVAFPFLPSLAAIIGGMALPLTFVYPCFMWISIKKPDKVSPMWWFNLGLGC 464

Query: 386 FGIILSVMLVVATFWNLVTKGVHANFFSP 414
            G++LSV+LV+A  WNL TKG+HANFF P
Sbjct: 465 LGLVLSVLLVIAAVWNLATKGLHANFFRP 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539144|ref|XP_002510637.1| amino acid transporter, putative [Ricinus communis] gi|223551338|gb|EEF52824.1| amino acid transporter, putative [Ricinus communis]

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/452 (47%), Positives = 284/452 (62%), Gaps = 43/452 (9%)

Query: 1   MQEV---QKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWG 57
           ++EV    KL P   + WLP+T SR+GN + + FH +SSGIG+QAL LP+ F TLGWTWG
Sbjct: 77  LEEVGHFTKLDPQ--EAWLPITESRSGNAYYSAFHTLSSGIGVQALVLPLAFTTLGWTWG 134

Query: 58  IICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGG 117
           ++ L   F WQ+YT+WLL+ L E   G RYSRY++++ AAFG KL K L +FP+ YLSGG
Sbjct: 135 LVSLSLIFMWQLYTLWLLIQLHESESGMRYSRYLRLSMAAFGEKLGKLLSLFPIMYLSGG 194

Query: 118 TCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLK 177
           TC+ LI+  G  ++ L++I+CG   TC  K L    W LLF C AIV++QL PNLNS+  
Sbjct: 195 TCVTLIMIGGGTMKILFQIVCG--ETCNLKPLLTTEWYLLFTCSAIVIAQL-PNLNSIAG 251

Query: 178 FSKTGTVTAVVYVTLLWALTIR-----------------------------------KGH 202
            S  G VTAV Y TL+W ++I                                    +GH
Sbjct: 252 VSLIGAVTAVSYCTLIWVVSIIQGRPTDVSHDPPEANSDTARLCSIFNALGIIAFAFRGH 311

Query: 203 NLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLS 262
           NLVLEIQGT+PSS   PS   MWR VK +Y+ I MC FPLA+ GYWAYGN +    G+L+
Sbjct: 312 NLVLEIQGTMPSSAKQPSRLPMWRGVKFAYLIIAMCLFPLAIGGYWAYGNLIPGNGGMLN 371

Query: 263 VFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAA 322
              + HGHDTS+  +G   LL +INCL  FQIYAMP FD+LE RY  K  + CPR +R+ 
Sbjct: 372 ALYKFHGHDTSKTLLGLTSLLVVINCLSSFQIYAMPVFDNLELRYTSKMNKPCPRWLRSV 431

Query: 323 YRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLG 382
            R FF  L   ++VAFPF PSLA  +GG+ LP   +YPC M+ ++KKP + G +W LN  
Sbjct: 432 IRMFFGCLAFFIAVAFPFLPSLAGLIGGIALPVTLAYPCFMWIIMKKPHKYGAIWCLNWT 491

Query: 383 LGCFGIILSVMLVVATFWNLVTKGVHANFFSP 414
           LG FG++LS+++V A  W +VT G+  +FF P
Sbjct: 492 LGLFGMVLSILVVAAAIWTIVTMGIEIHFFKP 523

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|452593|dbj|BAA04838.1| ORF [Lilium longiflorum]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/447 (47%), Positives = 286/447 (63%), Gaps = 41/447 (9%)

Query: 3   EVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLL 62
            V +L P   D+WLP+T SRNGN++ + FH +SSGIG QAL +PV F  LGW WGI+ L 
Sbjct: 77  HVTRLDPQ--DEWLPITQSRNGNSYYSAFHTLSSGIGFQALVVPVAFTFLGWLWGIVLLS 134

Query: 63  TAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIML 122
             F WQ+YT+WLLV L E VPGTRYSRY+ +AK  FG KL K + + P+ YLS GTC  L
Sbjct: 135 VGFCWQLYTLWLLVELHESVPGTRYSRYLHLAKDTFGEKLGKFMALVPIIYLSAGTCSAL 194

Query: 123 IITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTG 182
           II  G+ ++  ++I+CG   TC    L  V W L+F+C+A+V++QL P+LNS+   S  G
Sbjct: 195 IIVGGSTMKGFFQIVCG--PTCRYMPLTTVEWYLVFVCLAVVLAQL-PHLNSIAGVSLIG 251

Query: 183 TVTAVVYVTLLWALTIRKG-----------------------------------HNLVLE 207
            VTAV Y T++W +++RKG                                   HNLVLE
Sbjct: 252 AVTAVTYCTMIWVISVRKGKIPNISYEAVDTSWDVARVLSILNAIGIIAFAFRGHNLVLE 311

Query: 208 IQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQV 267
           IQGT+PS++ +P+   MWR VK++Y+ I  C FP+AL G+W+YGN++    G+L+  +Q 
Sbjct: 312 IQGTMPSTQKHPARVPMWRGVKVAYVLIAFCLFPVALIGFWSYGNQI-PPNGVLTALNQF 370

Query: 268 HGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFF 327
           H HDTSR  +G   LL +INCL  FQIYAMP FD++E  Y  KK + CP+ +R+ +R FF
Sbjct: 371 HSHDTSRTILGLTTLLVVINCLSSFQIYAMPIFDNMEAGYTSKKNKPCPQWLRSGFRAFF 430

Query: 328 TGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFG 387
             +  L+S AFPF P LA  +G + LP  F+YPC M+ +IKKP++ G +WWLN  LGC G
Sbjct: 431 GAVAFLISSAFPFLPQLAGLIGAVALPVTFAYPCFMWIVIKKPERFGVMWWLNWCLGCLG 490

Query: 388 IILSVMLVVATFWNLVTKGVHANFFSP 414
           + LSV+LVVA  W LV  GV+ +FF P
Sbjct: 491 MGLSVVLVVAGVWRLVETGVNISFFDP 517

Source: Lilium longiflorum

Species: Lilium longiflorum

Genus: Lilium

Family: Liliaceae

Order: Liliales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459826|ref|XP_002284824.1| PREDICTED: lysine histidine transporter-like 8 [Vitis vinifera]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/447 (46%), Positives = 284/447 (63%), Gaps = 41/447 (9%)

Query: 3   EVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLL 62
            + KL P   D WLP+T SR+GN + + FH +SSGIG+QAL LP+ F TLGW WGI+CL 
Sbjct: 74  HLTKLDPQ--DAWLPITESRDGNAYYSAFHSLSSGIGVQALVLPLAFTTLGWIWGILCLS 131

Query: 63  TAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIML 122
            AF WQ+YT+WLL+ L E   GTRYSRY++++ AAFG KL K L +FP  YLSGGTC+ L
Sbjct: 132 LAFGWQLYTLWLLIQLHESASGTRYSRYLRLSMAAFGEKLGKLLALFPTMYLSGGTCVTL 191

Query: 123 IITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTG 182
           +I  G  ++  ++I+C   + C    L  + W ++F C A++++QL PNLNS+   S  G
Sbjct: 192 VIIGGGTMKIFFQIVCD--SNCNVNPLTTIEWYIVFTCSAVILAQL-PNLNSIAGISLIG 248

Query: 183 TVTAVVYVTLLWALTIRK-----------------------------------GHNLVLE 207
           +++AV Y T++W +++ K                                   GHNLVLE
Sbjct: 249 SISAVTYCTVIWVVSVTKDRPHGVSYDPVKPTSDVARLCGILNALGIIAFAFRGHNLVLE 308

Query: 208 IQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQV 267
           IQGT+PSS  +PS + MW  VK +Y+ I M  FPLA+ GYWAYGN +  ++G+ +     
Sbjct: 309 IQGTMPSSAKHPSRKPMWSGVKFAYLIIAMSLFPLAVGGYWAYGNLIK-EDGMFAALYNY 367

Query: 268 HGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFF 327
           HGHDTSR  +G   LL +IN L  FQIYAMPAFD+LEFRYI  + Q CP  +R+ +R FF
Sbjct: 368 HGHDTSRIILGLTSLLIVINSLTSFQIYAMPAFDNLEFRYISSRNQPCPWWLRSGFRAFF 427

Query: 328 TGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFG 387
             L+  ++VA PF PSLA  +GG+ LP  F+YPC M+  IK+P +   +W+LN GLGC G
Sbjct: 428 GCLVFFIAVALPFLPSLAGLIGGVALPVTFAYPCFMWIQIKQPQKYSVIWYLNWGLGCMG 487

Query: 388 IILSVMLVVATFWNLVTKGVHANFFSP 414
           ++LSV+LV    W++VT G+  +FF P
Sbjct: 488 MVLSVLLVTGAVWSIVTMGIEIHFFKP 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141680|emb|CBI18883.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/447 (46%), Positives = 284/447 (63%), Gaps = 41/447 (9%)

Query: 3    EVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLL 62
             + KL P   D WLP+T SR+GN + + FH +SSGIG+QAL LP+ F TLGW WGI+CL 
Sbjct: 573  HLTKLDPQ--DAWLPITESRDGNAYYSAFHSLSSGIGVQALVLPLAFTTLGWIWGILCLS 630

Query: 63   TAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIML 122
             AF WQ+YT+WLL+ L E   GTRYSRY++++ AAFG KL K L +FP  YLSGGTC+ L
Sbjct: 631  LAFGWQLYTLWLLIQLHESASGTRYSRYLRLSMAAFGEKLGKLLALFPTMYLSGGTCVTL 690

Query: 123  IITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTG 182
            +I  G  ++  ++I+C   + C    L  + W ++F C A++++QL PNLNS+   S  G
Sbjct: 691  VIIGGGTMKIFFQIVCD--SNCNVNPLTTIEWYIVFTCSAVILAQL-PNLNSIAGISLIG 747

Query: 183  TVTAVVYVTLLWALTIRK-----------------------------------GHNLVLE 207
            +++AV Y T++W +++ K                                   GHNLVLE
Sbjct: 748  SISAVTYCTVIWVVSVTKDRPHGVSYDPVKPTSDVARLCGILNALGIIAFAFRGHNLVLE 807

Query: 208  IQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQV 267
            IQGT+PSS  +PS + MW  VK +Y+ I M  FPLA+ GYWAYGN +  ++G+ +     
Sbjct: 808  IQGTMPSSAKHPSRKPMWSGVKFAYLIIAMSLFPLAVGGYWAYGNLIK-EDGMFAALYNY 866

Query: 268  HGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFF 327
            HGHDTSR  +G   LL +IN L  FQIYAMPAFD+LEFRYI  + Q CP  +R+ +R FF
Sbjct: 867  HGHDTSRIILGLTSLLIVINSLTSFQIYAMPAFDNLEFRYISSRNQPCPWWLRSGFRAFF 926

Query: 328  TGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFG 387
              L+  ++VA PF PSLA  +GG+ LP  F+YPC M+  IK+P +   +W+LN GLGC G
Sbjct: 927  GCLVFFIAVALPFLPSLAGLIGGVALPVTFAYPCFMWIQIKQPQKYSVIWYLNWGLGCMG 986

Query: 388  IILSVMLVVATFWNLVTKGVHANFFSP 414
            ++LSV+LV    W++VT G+  +FF P
Sbjct: 987  MVLSVLLVTGAVWSIVTMGIEIHFFKP 1013

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061917|ref|XP_002300663.1| lysine/histidine transporter [Populus trichocarpa] gi|222842389|gb|EEE79936.1| lysine/histidine transporter [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/452 (45%), Positives = 280/452 (61%), Gaps = 44/452 (9%)

Query: 1   MQEV---QKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWG 57
           ++EV    KL P   D WLP+T SRNGN + + FH +SSGIG+QAL LP+ F TL WTWG
Sbjct: 74  LEEVGHFTKLDPQ--DAWLPITESRNGNAYYSAFHTLSSGIGVQALLLPLAFTTLSWTWG 131

Query: 58  IICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGG 117
           I+CL   F WQ+YT+WLL+ L E   G RYSRY++++ AAFG KL K L +FPV YLSGG
Sbjct: 132 ILCLSLVFMWQLYTLWLLIQLHESESGMRYSRYLRLSMAAFGEKLGKLLALFPVMYLSGG 191

Query: 118 TCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLK 177
           TC+ LI+  G  ++  ++I+CG   TC  + L  + W  LF+C+AI+++QL PNLNS+  
Sbjct: 192 TCVTLIMIGGGTMKIFFQIVCGD--TCSMRPLATIEWYFLFVCLAIILAQL-PNLNSIAG 248

Query: 178 FSKTGTVTAVVYVTLLWALTIR-----------------------------------KGH 202
            S  G +TA+ Y TL+W ++I                                    +GH
Sbjct: 249 VSLIGAITAISYCTLIWVVSIIQGRPEGVSYDPPETKSDMARICDILNALGIIAFAFRGH 308

Query: 203 NLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLS 262
           NLVLEIQGT+PSS   PS + MWR VK++Y+ I MC FPLA+ GYWAYGN +    G+L+
Sbjct: 309 NLVLEIQGTMPSSAKQPSRKPMWRGVKLAYVIIAMCLFPLAIGGYWAYGN-LMPNGGMLN 367

Query: 263 VFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAA 322
              + HGH TS+  +G   L  ++NCL  FQIYAMP FD+LE R+  K ++ CP  +R  
Sbjct: 368 ALHKYHGHSTSKLLLGLTSLFVVLNCLSSFQIYAMPVFDNLELRFTSKMKKPCPWWLRIV 427

Query: 323 YRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLG 382
           +R FF  L   +SVA PF  SLA  +GG+ LP   +YPC M+ LIKKP +   +W LN  
Sbjct: 428 FRIFFGCLAFFISVALPFLMSLAGLIGGVALPVTLAYPCFMWILIKKPTKYSAIWCLNWI 487

Query: 383 LGCFGIILSVMLVVATFWNLVTKGVHANFFSP 414
           LG  G++LS++++    W +VT G+  +FF P
Sbjct: 488 LGVLGMVLSMLVIAGAIWTIVTMGIEIHFFKP 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2008154	453	AT1G48640 [Arabidopsis thalian	0.543	0.496	0.326	2.6e-59
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.473	0.444	0.33	5.4e-59
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.466	0.437	0.321	2.3e-58
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.446	0.419	0.319	1.3e-57
TAIR|locus:2154815	446	LHT1 "lysine histidine transpo	0.495	0.459	0.322	2e-57
TAIR|locus:2015383	519	AT1G47670 [Arabidopsis thalian	0.731	0.583	0.381	8.3e-51
TAIR|locus:2132816	478	LHT7 "LYS/HIS transporter 7" [	0.695	0.602	0.383	1.8e-50
TAIR|locus:2008435	451	AT1G61270 [Arabidopsis thalian	0.562	0.516	0.334	6.4e-28
TAIR|locus:2013056	448	AT1G71680 [Arabidopsis thalian	0.681	0.629	0.256	5e-21
TAIR|locus:2031215	440	AT1G25530 [Arabidopsis thalian	0.623	0.586	0.266	1.8e-19

TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 78/239 (32%), Positives = 122/239 (51%)

Query:   180 KTGTVTAVV--YVTLLWALTIR-KGHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIG 236
             K+GT  + V  + T L  +     GHN+VLEIQ T+PS+  NPS   MWR V ++Y+ + 
Sbjct:   224 KSGTTASTVLSFFTGLGGIAFAYAGHNVVLEIQATIPSTPSNPSKGPMWRGVVVAYVVVA 283

Query:   237 MCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYA 296
             +C FP+AL GY  +GN V     L+S+       +T   A+ +  L  +++ +  +QI+A
Sbjct:   284 LCYFPVALVGYGVFGNAVLDNV-LMSL-------ETPVWAIATANLFVVMHVIGSYQIFA 335

Query:   297 MPAFDSLEFRYIFKKQQQCPRRV-RAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-P 354
             MP FD +E  ++ KK    P  V R   R  +  L   + +  PFF  L  F GG    P
Sbjct:   336 MPVFDMVE-TFLVKKLNFKPSTVLRFIVRNVYVALTMFIGIMIPFFGGLLAFFGGFAFAP 394

Query:   355 FKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFFS 413
               +  PC+M+ LI KP +    WW N      G++L ++  +     ++ +    +FFS
Sbjct:   395 TSYFLPCIMWLLIYKPKRFSLSWWTNWVCIVLGVVLMILSSIGGLRQIIIQSKDYSFFS 453

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 315 (115.9 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 66/200 (33%), Positives = 111/200 (55%)

Query:     2 QEVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICL 61
             Q+ +  Q  ++DDWLP+T+SRN   + + FH V++ +G   L LP   + LGW  GI  L
Sbjct:     7 QDGRSAQEKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSELGWGPGIAVL 66

Query:    62 LTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIM 121
             + ++   +YT+W +V + E VPG R+ RY ++ + AFG KL   + V     +  G  I+
Sbjct:    67 ILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLVVEVGVNIV 126

Query:   122 LIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT 181
              ++T G  L+  + ++C G   C  K++    + ++F  +  V+SQL PN NS+   S  
Sbjct:   127 YMVTGGKSLKKFHDVLCEGHG-C--KNIKLTYFIMIFASVHFVLSQL-PNFNSISGVSLA 182

Query:   182 GTVTAVVYVTLLWALTIRKG 201
               V ++ Y T+ W  ++ KG
Sbjct:   183 AAVMSLSYSTIAWGASVDKG 202

GO:0009536 "plastid" evidence=IC

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 64/199 (32%), Positives = 110/199 (55%)

Query:     3 EVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLL 62
             EV   +  ++DDWLP+T+SRN   + + FH V++ +G   L LP   + LGW  G+  ++
Sbjct:    10 EVAAAKQKNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMV 69

Query:    63 TAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIML 122
              ++   +YT+W +V + E VPG R  RY ++ + AFG KL   + V     +  G  I+ 
Sbjct:    70 MSWIITLYTLWQMVEMHEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVY 129

Query:   123 IITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTG 182
             ++T GA L+ +++++C      + K +    W ++F  +  V+S L PN NS+   S   
Sbjct:   130 MVTGGASLKKVHQLVCP-----DCKEIRTTFWIMIFASVHFVISHL-PNFNSISIISLAA 183

Query:   183 TVTAVVYVTLLWALTIRKG 201
              V ++ Y T+ WA ++ KG
Sbjct:   184 AVMSLTYSTIAWAASVHKG 202

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 61/191 (31%), Positives = 107/191 (56%)

Query:    11 SLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIY 70
             ++DDWLP+T+SRN   + + FH V++ +G   L LP   + LGW  G+  ++ ++    Y
Sbjct:    18 NVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITFY 77

Query:    71 TIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADL 130
             T+W +V + E VPG R+ RY ++ + AFG KL   + V     +  G  I+ ++T G  L
Sbjct:    78 TLWQMVQMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSL 137

Query:   131 ETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYV 190
             + ++ ++C      + K++    W ++F  I  V++ L PN NS+   S    V ++ Y 
Sbjct:   138 KKIHDLLC-----TDCKNIRTTYWIMIFASIHFVLAHL-PNFNSISIVSLAAAVMSLSYS 191

Query:   191 TLLWALTIRKG 201
             T+ WA +++KG
Sbjct:   192 TIAWATSVKKG 202

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 69/214 (32%), Positives = 109/214 (50%)

Query:   201 GHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGL 260
             GHN+VLEIQ T+PS+   PS   MWR V ++Y+ + +C FP+AL GY+ +GN V  ++ +
Sbjct:   241 GHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGV--EDNI 298

Query:   261 LSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVR 320
             L    +         A  +I++  +I+ +  +QIYAMP FD +E   + K   +    +R
Sbjct:   299 LMSLKK----PAWLIATANIFV--VIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLR 352

Query:   321 AAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWL 379
                R F+      + + FPFF  L  F GG    P  +  PC+++  I KP +    WW 
Sbjct:   353 FFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWA 412

Query:   380 NLGLGCFGIILSVMLVVATFWNLVTKGVHANFFS 413
             N     FG+ L V+  +     +V +     F+S
Sbjct:   413 NWVCIVFGLFLMVLSPIGGLRTIVIQAKGYKFYS 446

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0016020 "membrane" evidence=ISS

GO:0043090 "amino acid import" evidence=RCA;IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 122/320 (38%), Positives = 174/320 (54%)

Query:    99 GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLF 158
             GP    +      WYL   T + ++++   +L ++  +   G  T    S   +VW L  
Sbjct:   211 GPLCTSNPLTTVEWYLVF-TSLCIVLSQLPNLNSIAGLSLIGAVTAITYST--MVWVLS- 266

Query:   159 ICIAIVVSQLLPNLNSV--LKFSKT-GTVTAVVYVTLLWALTIRKGHNLVLEIQGTLPSS 215
                   VSQ  P   S   L    T G++ AV+    + A   R GHNLVLEIQ T+PS+
Sbjct:   267 ------VSQPRPATISYEPLSMPSTSGSLFAVLNALGIIAFAFR-GHNLVLEIQSTMPST 319

Query:   216 KFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRG 275
               +P+   MWR  KISY  I +C FP+++ G+WAYGN + +  G+L+     H HD  RG
Sbjct:   320 FKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLMPSG-GMLAALYAFHIHDIPRG 378

Query:   276 AMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISL-L 334
              + + +LL + +CL  FQIY+MPAFDS E  Y  +  + C   VR+ +R FF G +S  +
Sbjct:   379 LLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNKPCSIWVRSGFRVFF-GFVSFFI 437

Query:   335 SVAFPFFPSLAPFMGGLTLPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVML 394
              VA PF  SLA  +GGLTLP  F+YPC M+ LIKKP +    W+ + GLG  G+  S+  
Sbjct:   438 GVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSFNWYFHWGLGWLGVAFSLAF 497

Query:   395 VVATFWNLVTKGVHANFFSP 414
              +   W++VT G+   FF P
Sbjct:   498 SIGGIWSMVTNGLKLKFFKP 517

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 114/297 (38%), Positives = 166/297 (55%)

Query:   118 TCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLK 177
             +CI +I++   +L +L+     G++   A    G+ +C + I I  V S       SV  
Sbjct:   191 SCIAMIMSQFPNLNSLF-----GVSLIGA--FMGIAYCTV-IWILPVASDSQRTQVSVSY 242

Query:   178 FSKTGTVTAVVYVTLLWALTIRKGHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGM 237
              +   +   +     L AL  R G+NLVLEIQGTLPS   NPS + MWRAV IS+  + +
Sbjct:   243 ATMDKSFVHIFNAIGLIALVYR-GNNLVLEIQGTLPSDSKNPSCKTMWRAVMISHALVAI 301

Query:   238 CSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAM 297
             C FPL    YWAYG+K+ A  G +  + +++  + S+ A   I+L  I +CLC + I  M
Sbjct:   302 CMFPLTFAVYWAYGDKIPATGGPVGNYLKLYTQEHSKRAACFIHLTFIFSCLCSYPINLM 361

Query:   298 PAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTLPFKF 357
             PA D++E  YI KK++     VR   R F + +   ++V FPF P LA  +G + L   F
Sbjct:   362 PACDNIEMVYITKKKKPASIIVRMMLRVFLSLVCFTIAVGFPFLPYLAVLIGAIALLVTF 421

Query:   358 SYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHANFFSP 414
             +YPC M+  IKKP +   +W  N+ +GC G  LSV+L+VA+   L  KG+HANFF P
Sbjct:   422 TYPCFMWISIKKPQRKSPMWLFNVLVGCLGASLSVLLLVASAMRLAQKGLHANFFRP 478

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 86/257 (33%), Positives = 130/257 (50%)

Query:   148 SLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAV--VYVTLLWALTIR-KGHNL 204
             SL   V  + +  IA V S      N+V    K    T+V   ++  L  +     GHN+
Sbjct:   187 SLVAAVMSMSYSTIAWVASLTKGVANNVEYGYKRRNNTSVPLAFLGALGEMAFAYAGHNV 246

Query:   205 VLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVF 264
             VLEIQ T+PS+  NPS + MW+   ++Y+ +  C FP+AL G+W +GN V  +E +L   
Sbjct:   247 VLEIQATIPSTPENPSKRPMWKGAIVAYIIVAFCYFPVALVGFWTFGNNV--EENILK-- 302

Query:   265 SQVHGHDTSRGAMGSIYLLQI---INCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRV-R 320
                    T RG  G I +  I   I+ +  +Q+YAMP FD +E   + KK    P RV R
Sbjct:   303 -------TLRGPKGLIIVANIFVIIHLMGSYQVYAMPVFDMIE-SVMIKKWHFSPTRVLR 354

Query:   321 AAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWL 379
                R+ F      ++VA P F +L  F GG    P  +  PC+++ ++KKP +    W +
Sbjct:   355 FTIRWTFVAATMGIAVALPHFSALLSFFGGFIFAPTTYFIPCIIWLILKKPKRFSLSWCI 414

Query:   380 NLGLGCFGIILSVMLVV 396
             N    C  IIL V++++
Sbjct:   415 NWI--C--IILGVLVMI 427

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 5.0e-21, P = 5.0e-21
 Identities = 79/308 (25%), Positives = 147/308 (47%)

Query:   112 WYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPN 171
             +Y+ G   + L+++   D  ++ KI+          SL   +   L+  IA V S     
Sbjct:   161 YYILGFAALQLVLSQSPDFNSI-KIV----------SLLAALMSFLYSMIASVASIAKGT 209

Query:   172 LNSVLKFSKTG-TVTAVVYVTLLWALTIR---KGHNLVLEIQGTLPSSKFNPSSQKMWRA 227
              +    +   G TV ++V+       TI     GH++VLEIQ T+PS+   PS + MW+ 
Sbjct:   210 EHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKG 269

Query:   228 VKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIIN 287
             V ++Y+ + +C   +A++GYWA+G  V   + L+S+       +     + +   +  I+
Sbjct:   270 VVVAYIIVIICYLFVAISGYWAFGAHVE-DDVLISL-------ERPAWLIAAANFMVFIH 321

Query:   288 CLCQFQIYAMPAFDSLEFRYIFKKQQQCPRR-VRAAYRFFFTGLISLLSVAFPFFPSLAP 346
              +  +Q++AM  FD++E  Y+ K  +  P   +R   R  +  LI L++V  PFF  L  
Sbjct:   322 VIGSYQVFAMIVFDTIE-SYLVKTLKFTPSTTLRLVARSTYVALICLVAVCIPFFGGLLG 380

Query:   347 FMGGLTLPF-KFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFGIILSVMLVVATFWNLVTK 405
             F GGL      +  PC+++ ++K+P +    WW +      GI ++++  +    +++  
Sbjct:   381 FFGGLVFSSTSYFLPCIIWLIMKRPKRFSAHWWCSWVAIVTGISIAILAPIGGMRHIILS 440

Query:   406 GVHANFFS 413
                   FS
Sbjct:   441 ARTYKLFS 448

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 72/270 (26%), Positives = 123/270 (45%)

Query:   148 SLPGVVWCLLFICIA---IVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRKGHNL 204
             SL   V  L +  IA    +    +P+++   K +  G  T  V+  L        GH +
Sbjct:   179 SLAAAVMSLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAV 238

Query:   205 VLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVF 264
              LEIQ T+PS+   PS   MW+ V  +Y+   +C FP+AL  YWA+G  V   + +L   
Sbjct:   239 ALEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVD--DNVLMNL 296

Query:   265 SQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYR 324
              +          + +  L+ +++ +  +Q++AMP FD LE   + K   +    +R   R
Sbjct:   297 QR------PAWLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTR 350

Query:   325 FFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWLNLGL 383
               +      + V+FPFF  L  F GG    P  F  P +M+ +IKKP +    W++N   
Sbjct:   351 TIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWIS 410

Query:   384 GCFGIILSVMLVVATFWNLVTKGVHANFFS 413
                G+ + +   +    N++      +F++
Sbjct:   411 IIVGVFIMLASTIGGLRNIIADSSTYSFYA 440

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrLHT9 lysine/histidine transporter (442 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	414
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	2e-29

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  117 bits (296), Expect = 2e-29
 Identities = 87/426 (20%), Positives = 155/426 (36%), Gaps = 63/426 (14%)

Query: 22  RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLV---HL 78
              + +  VF+++ + IG   L LP  F  LGW  G+I L+      +YT+ LLV     
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 79  AEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMC 138
            + V G R   Y  +    FGPK  K L +F +     G CI  +I AG +L  ++    
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 139 GGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTI 198
                     +  V + ++F  I I +S + PNL+++   S    V + +Y+ +L     
Sbjct: 120 DT------CHISLVYFIIIFGLIFIPLSFI-PNLSALSILSLVAAV-SSLYIVILVLSVA 171

Query: 199 RK----------------------------------GHNLVLEIQGTLPSSKFNPSSQKM 224
                                               GH ++L IQ T+ S         M
Sbjct: 172 ELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFK---AM 228

Query: 225 WRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQ 284
            + +  + + + +    + L GY A+GN V  K  +L    +    D        + +L 
Sbjct: 229 TKVLLTAIIIVTVLYILVGLVGYLAFGNNV--KGNILLNLPKS---DWLIDIANLLLVLH 283

Query: 285 IINCLCQFQIYAMPAFDSLEFRYIFKKQQQCPRRV----RAAYRFFFTGLISLLSVAFPF 340
           ++     + + A P    +E     K             R   R     +  L++++ PF
Sbjct: 284 LLL---SYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPF 340

Query: 341 FPSLAPFMGGLT-LPFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCFG-IILSVMLVVAT 398
                  +G  +  P  F  P L +  +KK  +          +     I++ ++L+   
Sbjct: 341 LGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYG 400

Query: 399 FWNLVT 404
              L+ 
Sbjct: 401 VAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	100.0
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.96
PRK10483	414	tryptophan permease; Provisional	99.86
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.85
PRK09664	415	tryptophan permease TnaB; Provisional	99.85
PRK15132	403	tyrosine transporter TyrP; Provisional	99.84
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.83
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.69
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.65
PRK10655	438	potE putrescine transporter; Provisional	99.01
PRK10644	445	arginine:agmatin antiporter; Provisional	98.88
PRK11021	410	putative transporter; Provisional	98.77
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.76
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.75
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.75
TIGR00909	429	2A0306 amino acid transporter.	98.74
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.73
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.7
PRK15049	499	L-asparagine permease; Provisional	98.67
PRK10249	458	phenylalanine transporter; Provisional	98.67
PRK11387	471	S-methylmethionine transporter; Provisional	98.66
TIGR00930	953	2a30 K-Cl cotransporter.	98.62
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.61
PRK10238	456	aromatic amino acid transporter; Provisional	98.55
KOG1287	479	consensus Amino acid transporters [Amino acid tran	98.54
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.51
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.48
PRK10836	489	lysine transporter; Provisional	98.44
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.42
TIGR00913	478	2A0310 amino acid permease (yeast).	98.41
PRK10746	461	putative transport protein YifK; Provisional	98.35
PRK10580	457	proY putative proline-specific permease; Provision	98.33
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.32
TIGR00911	501	2A0308 L-type amino acid transporter.	98.22
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.16
KOG3832	319	consensus Predicted amino acid transporter [Genera	98.13
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	97.92
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.91
COG0833	541	LysP Amino acid transporters [Amino acid transport	97.89
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.75
PF03845	320	Spore_permease: Spore germination protein; InterPr	97.74
PRK11375	484	allantoin permease; Provisional	97.35
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.24
PRK15238	496	inner membrane transporter YjeM; Provisional	97.18
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	97.05
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	97.05
PRK09442	483	panF sodium/panthothenate symporter; Provisional	97.01
COG3949	349	Uncharacterized membrane protein [Function unknown	96.97
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	96.95
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.9
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	96.79
KOG1286	554	consensus Amino acid transporters [Amino acid tran	96.73
COG1457	442	CodB Purine-cytosine permease and related proteins	96.2
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	96.15
TIGR00813	407	sss transporter, SSS family. have different number	95.94
KOG2082	1075	consensus K+/Cl- cotransporter KCC1 and related tr	95.42
PRK00701	439	manganese transport protein MntH; Reviewed	95.35
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	95.13
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	94.96
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	94.92
PRK11017	404	codB cytosine permease; Provisional	94.78
KOG1289	550	consensus Amino acid transporters [Amino acid tran	94.65
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	94.01
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	93.16
PRK12488	549	acetate permease; Provisional	92.19
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	91.75
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	88.87
PF01566	358	Nramp: Natural resistance-associated macrophage pr	88.25
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	87.29
PRK15015	701	carbon starvation protein A; Provisional	86.85
PRK09395	551	actP acetate permease; Provisional	86.37
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	85.4
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	84.96
COG1966	575	CstA Carbon starvation protein, predicted membrane	83.68

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=3.2e-60  Score=470.60  Aligned_cols=375  Identities=35%  Similarity=0.601  Sum_probs=335.2

Q ss_pred             CCCCCCCCccccccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC---CCCc
Q 046376            9 PNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP---VPGT   85 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~---~~~~   85 (414)
                      .+++|+|.+.+++|++||+++.+|.++.++|.|+|+||||++++||+.|+++++..+++++||..+|.+|.+.   .+++
T Consensus        23 ~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~  102 (437)
T KOG1303|consen   23 KSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK  102 (437)
T ss_pred             ccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence            4566888999999999999999999999999999999999999999999999999999999999999999643   3466


Q ss_pred             cccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHH
Q 046376           86 RYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVV  165 (414)
Q Consensus        86 ~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpL  165 (414)
                      |+.+|+|+++++||++. ++++..++...+||.|++|++.++|+++.+++.++.++.     ..+.+.|+++++++++|+
T Consensus       103 r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-----~l~~~~f~iif~~i~~~~  176 (437)
T KOG1303|consen  103 RRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-----SLDKQYFIIIFGLIVLPL  176 (437)
T ss_pred             cCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----cccceehhhhHHHHHHHH
Confidence            77899999999999866 655544445567999999999999999999998776531     233578999999999999


Q ss_pred             hhhccCccchhhHHHHHHHHHHHHHHHHhhhhhcc--------------------------------cceeehhhhhhCC
Q 046376          166 SQLLPNLNSVLKFSKTGTVTAVVYVTLLWALTIRK--------------------------------GHNLVLEIQGTLP  213 (414)
Q Consensus       166 s~l~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~--------------------------------g~~~~~~i~~~m~  213 (414)
                      +++ ||+++++|+|..++++++.|..+.++.++.+                                ||+++||||++| 
T Consensus       177 s~l-p~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tM-  254 (437)
T KOG1303|consen  177 SQL-PNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTM-  254 (437)
T ss_pred             HHC-CCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhc-
Confidence            999 9999999999999999988888777665432                                799999999999 


Q ss_pred             CCCCCCCcccchhHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhc
Q 046376          214 SSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQ  293 (414)
Q Consensus       214 ~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~syp  293 (414)
                         |+|++  |+|++..++.+++.+|+.+++.||++|||++++  +++.|+      +.|.|+...+|+++.+|++.+|+
T Consensus       255 ---k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~--~il~s~------~~p~~~~~~ani~i~~h~i~s~~  321 (437)
T KOG1303|consen  255 ---KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD--NILLSL------QPPTWLIALANILIVLHLIGSYQ  321 (437)
T ss_pred             ---CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch--hhhhcc------cCchhHHHHHHHHHHHHHhhhhh
Confidence               56665  889999999999999999999999999999999  999998      35789999999999999999999


Q ss_pred             ccccchHHHHHHHhhhhccC--CCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCC
Q 046376          294 IYAMPAFDSLEFRYIFKKQQ--QCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKP  370 (414)
Q Consensus       294 l~~~p~~~~le~~~~~~~~~--~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~  370 (414)
                      ++.+|+++.+|+....++++  +.....|.+.|+.+++.++++|+.+|+|+++++++||+.. ++++++|++||++++|+
T Consensus       322 i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~  401 (437)
T KOG1303|consen  322 IYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKP  401 (437)
T ss_pred             hhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999988765442  1234689999999999999999999999999999999999 99999999999999998


Q ss_pred             CCCcchHHHHHhH-HHHHHHHHHHHHHHHHHHHHh
Q 046376          371 DQSGTLWWLNLGL-GCFGIILSVMLVVATFWNLVT  404 (414)
Q Consensus       371 ~~~~~~~~~~~~l-i~~g~~~~v~g~~~s~~~ii~  404 (414)
                      ++...+|+.++.+ .++|++.++....+++++++.
T Consensus       402 ~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~  436 (437)
T KOG1303|consen  402 KRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLII  436 (437)
T ss_pred             hhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence            8888999999999 799999999999999999875

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=1.1e-52  Score=427.10  Aligned_cols=364  Identities=18%  Similarity=0.207  Sum_probs=289.5

Q ss_pred             cCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376           22 RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK  101 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~  101 (414)
                      ++|+..+++||++|+++|+|+|+||+||+++||+.|++++++++.++.||.+++.+++++   .+..+|+|++++++||+
T Consensus        58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~---~~~~sY~~la~~~~G~~  134 (467)
T PTZ00206         58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK---TNIRTYEGVARVLLGPW  134 (467)
T ss_pred             CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCHHHHHHHHhCHH
Confidence            467778999999999999999999999999999999999999999999999999999874   23569999999999994


Q ss_pred             cchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHH
Q 046376          102 LAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT  181 (414)
Q Consensus       102 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~  181 (414)
                       ++++..+.....++|+|++|+++.+|+++.+++.....+ .......++..+.+++.++++|++++ |++++|+|+|.+
T Consensus       135 -g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~-~~~~~~~~r~~~~~i~~~i~lPLs~~-r~i~~L~~~S~i  211 (467)
T PTZ00206        135 -GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPD-FLKQKSGNRLLTSLMWLCFMLPLVIP-RHIDSLRYVSTI  211 (467)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-hhhhccCcEEeeeehhhhHhhhcccc-cchHHHHHHHHH
Confidence             555554455556799999999999999998775311100 00001112233445566778999999 999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhc---------------------------c-------------cceeehhhhhhCCCCCCCCCc
Q 046376          182 GTVTAVVYVTLLWALTIR---------------------------K-------------GHNLVLEIQGTLPSSKFNPSS  221 (414)
Q Consensus       182 ~~~~~~~~~~i~~~~~~~---------------------------~-------------g~~~~~~i~~~m~~~~~~p~~  221 (414)
                      |+++.+...+.+++.+..                           +             +|..+||++++|    |||+.
T Consensus       212 ~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~  287 (467)
T PTZ00206        212 AVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSV  287 (467)
T ss_pred             HHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccch
Confidence            986544333332221110                           0             688899999999    67888


Q ss_pred             ccchhHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHH
Q 046376          222 QKMWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFD  301 (414)
Q Consensus       222 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~  301 (414)
                      +++.+++..++.++.++|..+|++||+.||+++++  +++.|+++     ..+....+++++..++++.+||++.+|+++
T Consensus       288 ~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~--~Illn~~p-----~~~~~~~v~~~~~~~~v~~sypL~~~p~r~  360 (467)
T PTZ00206        288 GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTG--SVLLMYDP-----VNEPAIMVGFVGVLVKLFVSYALLGMACRN  360 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccch--HHHHhCCC-----CCCchhhHHHHHHHHHHHHhhhhhhhhHHH
Confidence            88899999999999999999999999999999999  99999932     112244677888899999999999999999


Q ss_pred             HHHHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhc---CCCCCcchH
Q 046376          302 SLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIK---KPDQSGTLW  377 (414)
Q Consensus       302 ~le~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~---k~~~~~~~~  377 (414)
                      .+++.+..+. ++.+.+++...+..+++.++++|+++|+++.+++++||+++ .++|++|+++|++..   +++....+|
T Consensus       361 ~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~  439 (467)
T PTZ00206        361 ALYDVIGWDA-RKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYY  439 (467)
T ss_pred             HHHHHhCCCc-ccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHH
Confidence            9998764332 22234556666777777888999999999999999999999 999999999999842   112222345


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046376          378 WLNLGLGCFGIILSVMLVVATFWNLV  403 (414)
Q Consensus       378 ~~~~~li~~g~~~~v~g~~~s~~~ii  403 (414)
                      +.+++++++|++.++.|||+|+++.+
T Consensus       440 ~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        440 ISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHhheEEecchhHhhHHh
Confidence            68999999999999999999999876

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=6e-52  Score=405.11  Aligned_cols=357  Identities=18%  Similarity=0.251  Sum_probs=305.4

Q ss_pred             CceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC---CCCccccCHHHHHHHhc--
Q 046376           24 GNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP---VPGTRYSRYMQVAKAAF--   98 (414)
Q Consensus        24 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~---~~~~~~~sy~~l~~~~~--   98 (414)
                      .|..++..|+.|+++|+|+|+||+||+++||+.|.+..++.++++.||++++++|...   ..+....+|++.++.++  
T Consensus        47 ~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~  126 (449)
T KOG1304|consen   47 TSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEG  126 (449)
T ss_pred             CchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcC
Confidence            4688999999999999999999999999999999999999999999999999999521   11223478888887764  


Q ss_pred             --------CCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhcc
Q 046376           99 --------GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLP  170 (414)
Q Consensus        99 --------G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~  170 (414)
                              |+ ++|.++....+..|+|.|.+|+++++++++++.+.       +.....+.+.|+.+...++++++++ |
T Consensus       127 ~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~-------~~~~~~s~~~~i~~~~~~~lll~~I-r  197 (449)
T KOG1304|consen  127 GPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE-------HSPGVLSVRLYILIQLPPLLLLNLI-R  197 (449)
T ss_pred             CcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc-------cCCCCccHHHHHHHHHHHHHHHHHH-H
Confidence                    44 45666666667788999999999999999998862       1224456788999988999999999 9


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHhhhhhcc----------------------------cceeehhhhhhCCCCCCCCCcc
Q 046376          171 NLNSVLKFSKTGTVTAVVYVTLLWALTIRK----------------------------GHNLVLEIQGTLPSSKFNPSSQ  222 (414)
Q Consensus       171 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~----------------------------g~~~~~~i~~~m~~~~~~p~~~  222 (414)
                      |+|.|+.+|+++.+..++..++++.....+                            |.+++.+++++|    |+|+++
T Consensus       198 ~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P~~F  273 (449)
T KOG1304|consen  198 NLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKPQKF  273 (449)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cChhhc
Confidence            999999999999987766666655443322                            789999999999    788764


Q ss_pred             c-chhHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHH
Q 046376          223 K-MWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFD  301 (414)
Q Consensus       223 ~-~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~  301 (414)
                      . -.+++..+|.+++++|..+|.+||++|||++++  .|+.|+|      + +|+.+.+++.+.+.++.+||+|.+|..+
T Consensus       274 ~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~--sITLNLP------~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~e  344 (449)
T KOG1304|consen  274 PGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKG--SITLNLP------Q-EILSQTVKLLLAIAIFLTYPLQFYVPIE  344 (449)
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHhhccccccc--eEEecCC------c-cHHHHHHHHHHHHHHHHcCchhhhhhHH
Confidence            2 127999999999999999999999999999999  9999994      4 6888999999999999999999999999


Q ss_pred             HHHHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCC---CcchH
Q 046376          302 SLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQ---SGTLW  377 (414)
Q Consensus       302 ~le~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~---~~~~~  377 (414)
                      .+|+.+.+|.+.+..++....+|+.+++.+..+|.++||++.+++++||+++ ++.+++|+++|+..++++.   +.+++
T Consensus       345 Ii~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~  424 (449)
T KOG1304|consen  345 IIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKL  424 (449)
T ss_pred             HHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHH
Confidence            9999877664433345678899999999999999999999999999999999 9999999999999976553   34677


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHH
Q 046376          378 WLNLGLGCFGIILSVMLVVATFWNL  402 (414)
Q Consensus       378 ~~~~~li~~g~~~~v~g~~~s~~~i  402 (414)
                      +.|.+++++|++..+.|||+|+.++
T Consensus       425 ~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  425 IKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            8999999999999999999998753

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=2.6e-48  Score=393.59  Aligned_cols=362  Identities=18%  Similarity=0.244  Sum_probs=289.7

Q ss_pred             CCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccC----CCC--Cc--c--ccCHHH
Q 046376           23 NGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAE----PVP--GT--R--YSRYMQ   92 (414)
Q Consensus        23 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~----~~~--~~--~--~~sy~~   92 (414)
                      +++..++.+|+++..+|.|+|+||+||+++||+.|++.+++.++++.||++++.+|+.    +.+  +.  +  ..+|.|
T Consensus        45 ~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e  124 (473)
T PLN03074         45 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE  124 (473)
T ss_pred             CchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence            5677889999999999999999999999999999999999999999999999998631    111  11  1  136899


Q ss_pred             HHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCc
Q 046376           93 VAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNL  172 (414)
Q Consensus        93 l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l  172 (414)
                      +++..+||+++++....+... +++.|+.|++..++++..+-    +        ..+.+.|+++++++++|++++ |++
T Consensus       125 ~~~~~~G~~~~~~~~~~~~v~-l~~~~v~~li~~~~~~~~l~----~--------~~~~~~~~~i~~~v~~~~~~i-~sl  190 (473)
T PLN03074        125 VLDGLLGPYWKNVGLAFNCTF-LLFGSVIQLIACASNIYYIN----D--------NLDKRTWTYIFGACCATTVFI-PSF  190 (473)
T ss_pred             HHHHhcChhHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhhhC----C--------CcCCCeEEeehHHHHHHHHHc-cCH
Confidence            999999997766666655554 58999999998887765431    1        123467888899999999999 999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhhhh---------c----c----------------cceeehhhhhhCCCCCCCCCccc
Q 046376          173 NSVLKFSKTGTVTAVVYVTLLWALTI---------R----K----------------GHNLVLEIQGTLPSSKFNPSSQK  223 (414)
Q Consensus       173 ~~l~~~s~~~~~~~~~~~~i~~~~~~---------~----~----------------g~~~~~~i~~~m~~~~~~p~~~~  223 (414)
                      |+++|+|.+|..+++.+...++..++         +    +                ||+++|||+++|    |||++++
T Consensus       191 ~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~F~  266 (473)
T PLN03074        191 HNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQKFK  266 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhccc
Confidence            99999999998755432222211111         0    0                799999999999    7898754


Q ss_pred             chhHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHH
Q 046376          224 MWRAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSL  303 (414)
Q Consensus       224 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~l  303 (414)
                        ++...++..+.+.|..+|+.||++|||++.+.++.+.|+|      .+.| ..+++++..++.+.+||++.+|+.+.+
T Consensus       267 --~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp------~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~  337 (473)
T PLN03074        267 --YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP------RSGW-RDAAVILMLIHQFITFGFACTPLYFVW  337 (473)
T ss_pred             --chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC------CchH-HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence              7888888889999999999999999998764236677773      2223 478899999999999999999999999


Q ss_pred             HHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCC-----------
Q 046376          304 EFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPD-----------  371 (414)
Q Consensus       304 e~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~-----------  371 (414)
                      |+....+  +......|.++|+.+++.++++|..+|+|+++++++||+++ +++|++|+++|++.++++           
T Consensus       338 e~~~~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~  415 (473)
T PLN03074        338 EKAIGVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPP  415 (473)
T ss_pred             HHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCc
Confidence            9976543  12235678999999999999999999999999999999999 999999999999865432           


Q ss_pred             --CCcch--HHHHHhHHHHHHHH-HHHHHHHHHHHHHhccccccCCC
Q 046376          372 --QSGTL--WWLNLGLGCFGIIL-SVMLVVATFWNLVTKGVHANFFS  413 (414)
Q Consensus       372 --~~~~~--~~~~~~li~~g~~~-~v~g~~~s~~~ii~~~~~~~~~~  413 (414)
                        ..+++  .+.|+++++++.++ .+.|+|+|+++++++.++|+.|+
T Consensus       416 ~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~  462 (473)
T PLN03074        416 FFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA  462 (473)
T ss_pred             ccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence              11122  26899999876666 58999999999999999999875

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=1.6e-50  Score=406.37  Aligned_cols=358  Identities=27%  Similarity=0.422  Sum_probs=299.3

Q ss_pred             cCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCC-CccccCHHHHHHHhcCC
Q 046376           22 RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVP-GTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~-~~~~~sy~~l~~~~~G~  100 (414)
                      |++|++++++|++|+++|+|+|+||++|+++||+.|++++++++.++.||.+++.|+++..+ +++..+|+|++++++||
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~   80 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP   80 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence            57899999999999999999999999999999999999999999999999999999987532 34678999999999999


Q ss_pred             ccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHH
Q 046376          101 KLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSK  180 (414)
Q Consensus       101 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~  180 (414)
                      ++++++.....+ .++|.|++|+++.+|++..+.+...++      ...++..|.++.+++++|++++ |+++++++.|.
T Consensus        81 ~~~~~~~~~~~~-~~~g~~v~y~i~~~~~l~~~~~~~~~~------~~~~~~~~~~i~~~i~~pls~~-~~l~~l~~~s~  152 (409)
T PF01490_consen   81 KGKWFVDICIFI-YLFGSCVAYLIIIGDSLSSLIPSFFGD------LFISRYVWIIIFALIVLPLSFL-KNLKSLRYLSI  152 (409)
T ss_pred             cccccccchhee-ccccccceeEEEeeeeeeccccccccc------cccccccccccccccccccccc-chhhHHHHHhh
Confidence            766666665555 569999999999999999987654332      1234566777788889999999 99999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcc----------------------------------cceeehhhhhhCCCCCCCCCc-ccch
Q 046376          181 TGTVTAVVYVTLLWALTIRK----------------------------------GHNLVLEIQGTLPSSKFNPSS-QKMW  225 (414)
Q Consensus       181 ~~~~~~~~~~~i~~~~~~~~----------------------------------g~~~~~~i~~~m~~~~~~p~~-~~~~  225 (414)
                      +|.++.+.+..+.+......                                  +|..+||++++|    |+|++ ++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~  228 (409)
T PF01490_consen  153 LGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMK  228 (409)
T ss_pred             hhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccc
Confidence            99876543212211111100                                  789999999999    67777 6788


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHH
Q 046376          226 RAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEF  305 (414)
Q Consensus       226 ~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~  305 (414)
                      ++...++.+++++|..+|.+||++||+++++  |++.|+++      .++...++++++.++++.+||++.+|.++.+|+
T Consensus       229 ~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~--~il~n~~~------~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~  300 (409)
T PF01490_consen  229 KVLSISMIICFIIYLLFGIFGYLAFGDSVQG--NILLNLPN------DDVLIIIARILLVISLLLSYPLQLFPARNSLEN  300 (409)
T ss_pred             eeeeehhhhhhHHhhhhhhcccceeeeeecc--hhhhcCCC------cccccccccccchhhhhhccccccchhHhhhhh
Confidence            9999999999999999999999999999999  99999953      235678899999999999999999999999999


Q ss_pred             Hhhhh--------ccCCCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCCCcch
Q 046376          306 RYIFK--------KQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTL  376 (414)
Q Consensus       306 ~~~~~--------~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~~~~~  376 (414)
                      .+.++        ++++.++++|..+|++++..++++|..+|+++++++++||+++ .++|++|+++|+|.+|+++.+.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~  380 (409)
T PF01490_consen  301 LLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFG  380 (409)
T ss_pred             heeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccc
Confidence            87642        1222345778999999999999999999999999999999999 99999999999999877654433


Q ss_pred             H-----HHHHhHHHHHHHHHHHHHHHHH
Q 046376          377 W-----WLNLGLGCFGIILSVMLVVATF  399 (414)
Q Consensus       377 ~-----~~~~~li~~g~~~~v~g~~~s~  399 (414)
                      +     ..+++.+++|++.++.|++.++
T Consensus       381 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  381 WWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             eeehhhccceEEEEEeeehhHHhHHHHc
Confidence            3     3467888899999999998765

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-40  Score=329.04  Aligned_cols=370  Identities=20%  Similarity=0.260  Sum_probs=293.8

Q ss_pred             cCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376           22 RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK  101 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~  101 (414)
                      ++.+.+.+++|+.|+++|+|++++|+||++.|.+.|++++..+++++.++.+++.+|.+.. +  ..+|++++++++|+.
T Consensus         4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-~--~~ty~~l~~~~~g~~   80 (411)
T KOG1305|consen    4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-G--ERTYSSLGDLIFGKL   80 (411)
T ss_pred             CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-C--CCCHHHHHHHHcCCC
Confidence            4457889999999999999999999999999999999999999999999999999998753 2  239999999999994


Q ss_pred             cchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcch-hhHhHHHHHHHHhhhccCccchhhHHH
Q 046376          102 LAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVV-WCLLFICIAIVVSQLLPNLNSVLKFSK  180 (414)
Q Consensus       102 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~lpLs~l~~~l~~l~~~s~  180 (414)
                       ++............| |++|+++.+|.++.+......+++.- ..+.+++. +++....+.+||+.. |+++++++.|.
T Consensus        81 -g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~-~~~~~~~~~ill~~~~~i~pLsl~-k~l~~Lk~tS~  156 (411)
T KOG1305|consen   81 -GKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGG-SHYLDRNFLILLVLLFIILPLSLL-KNLDSLKYTSA  156 (411)
T ss_pred             -ceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccc-cccccceeEeehHHHHHHHHHHHH-HhhhhHHHHHH
Confidence             554433322222255 69999999999997665433221100 00223333 566777888999999 99999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhc------c--------------------------cceeehhhhhhCCCCCCCCCcccchhHH
Q 046376          181 TGTVTAVVYVTLLWALTIR------K--------------------------GHNLVLEIQGTLPSSKFNPSSQKMWRAV  228 (414)
Q Consensus       181 ~~~~~~~~~~~i~~~~~~~------~--------------------------g~~~~~~i~~~m~~~~~~p~~~~~~~~~  228 (414)
                      ++.+....+..+++.....      +                          +|....++++||    |||++++|+++.
T Consensus       157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~v~  232 (411)
T KOG1305|consen  157 LSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQRVS  232 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHHHH
Confidence            9987655544444433332      1                          455555677777    889999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHHHhh
Q 046376          229 KISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYI  308 (414)
Q Consensus       229 ~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~~~~  308 (414)
                      ..+...+.++|..+|.+||+.|||++.+  |++.+++++.+.+-..+....++.++.++.+.++|+..+|++..+++.+.
T Consensus       233 ~~~~~~~~~iy~~~g~~GYL~Fg~~v~~--n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~  310 (411)
T KOG1305|consen  233 NIAIILATLIYLLTGLFGYLTFGDLVKG--NLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLF  310 (411)
T ss_pred             HHHHHHHHHHHHHHHHhhhheecccchH--HHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence            9999999999999999999999999999  99999965433221123457889999999999999999999999988776


Q ss_pred             hhccC--CCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCCCcchHHHHHhHHH
Q 046376          309 FKKQQ--QCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGC  385 (414)
Q Consensus       309 ~~~~~--~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~~~~~~~~~~~li~  385 (414)
                      +++++  +.+..++.++...++..+.+.|+.+|+++++++++||+++ .++|++|+++|++.+|+  +.++....+...+
T Consensus       311 ~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~  388 (411)
T KOG1305|consen  311 PYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLI  388 (411)
T ss_pred             ccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHH
Confidence            55442  2345667788888889999999999999999999999999 99999999999999876  4445566778888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 046376          386 FGIILSVMLVVATFWNLVTKG  406 (414)
Q Consensus       386 ~g~~~~v~g~~~s~~~ii~~~  406 (414)
                      +++.++++|+..-+.++..+.
T Consensus       389 ~~~~~~i~~~~~~i~~~~~~~  409 (411)
T KOG1305|consen  389 LGVLLSIIGVAVMIYDLLAKN  409 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            999999999988888877653

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-39  Score=300.77  Aligned_cols=361  Identities=18%  Similarity=0.244  Sum_probs=295.2

Q ss_pred             cCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC-CC-C---ccccCHHHHHHH
Q 046376           22 RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP-VP-G---TRYSRYMQVAKA   96 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~-~~-~---~~~~sy~~l~~~   96 (414)
                      .+-+.|+|..|..|++-|-=+++||+|....||. ++..+++++.+++||+.+|++|..+ .+ |   +...||.++|+.
T Consensus       115 ~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~  193 (524)
T KOG4303|consen  115 EKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADF  193 (524)
T ss_pred             CccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHH
Confidence            3457899999999999999999999999999996 9999999999999999999999532 11 2   234689999999


Q ss_pred             hcCCccc-hhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccch
Q 046376           97 AFGPKLA-KSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSV  175 (414)
Q Consensus        97 ~~G~~~~-~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l  175 (414)
                      +++|+.| |++..++...+ ..+|+-|++..||.|..-++.          ......-|+.+.++.++|.+++ +++|..
T Consensus       194 C~~P~lGgr~V~~AQliEL-lmTCIlYvVv~gdLl~~~fP~----------~svd~~sWm~i~~a~LLpc~FL-k~Lk~V  261 (524)
T KOG4303|consen  194 CYKPGLGGRWVLAAQLIEL-LMTCILYVVVAGDLLQSCFPG----------LSVDKASWMMITSASLLPCSFL-KDLKIV  261 (524)
T ss_pred             hcCCCcchheeeHHHHHHH-HHHHHhhhheechhhhccCCC----------CCccccchhhhhhHHHhhhHHH-HHHHHH
Confidence            9999866 88888776665 899999999999988764432          1223456889999999999999 999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhcc------------------------------cceeehhhhhhCCCCCCCCCcccch
Q 046376          176 LKFSKTGTVTAVVYVTLLWALTIRK------------------------------GHNLVLEIQGTLPSSKFNPSSQKMW  225 (414)
Q Consensus       176 ~~~s~~~~~~~~~~~~i~~~~~~~~------------------------------g~~~~~~i~~~m~~~~~~p~~~~~~  225 (414)
                      +.+|....+.-++.-++++.+|...                              .|..+|+++.+|    ++|++++  
T Consensus       262 S~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn--  335 (524)
T KOG4303|consen  262 SRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN--  335 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe--
Confidence            9999988877776666666666542                              478889999888    7898876  


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhccccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHH
Q 046376          226 RAVKISYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEF  305 (414)
Q Consensus       226 ~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~  305 (414)
                      -.+.++=....++-..+|..||++|||++++  .|.+|+|+   +  +  ...++|++.++..+.|||+-.+.+.+.+|+
T Consensus       336 ~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~Tqe--vItnnLp~---q--s--fk~~VN~fLV~KALLSYPLPfyAAvelLe~  406 (524)
T KOG4303|consen  336 VMLKWSHIAAAVFKVVFGMLGFLTFGELTQE--VITNNLPN---Q--S--FKILVNLFLVVKALLSYPLPFYAAVELLEN  406 (524)
T ss_pred             eeeehHHHHHHHHHHHHHHheeeeechhhHH--HHhcCCCc---c--c--hhhhhhHHHHHHHHHcCCchHHHHHHHHHH
Confidence            3455555567788899999999999999998  89999842   1  1  456789999999999999998888999988


Q ss_pred             HhhhhccC-CCc---------hhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCCCc
Q 046376          306 RYIFKKQQ-QCP---------RRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSG  374 (414)
Q Consensus       306 ~~~~~~~~-~~~---------~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~~~  374 (414)
                      -+....++ +++         +...+.+|.++++++.++|+.+|+|..+|+++|++++ .++|+.|++||+++..+....
T Consensus       407 nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~  486 (524)
T KOG4303|consen  407 NLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNN  486 (524)
T ss_pred             hhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhh
Confidence            76543222 111         1234678999999999999999999999999999999 999999999999996544444


Q ss_pred             chHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 046376          375 TLWWLNLGLGCFGIILSVMLVVATFWNLVTKGVHAN  410 (414)
Q Consensus       375 ~~~~~~~~li~~g~~~~v~g~~~s~~~ii~~~~~~~  410 (414)
                      .++..+..+++.|..++|.|.|-|..++++......
T Consensus       487 ~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~  522 (524)
T KOG4303|consen  487 FEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSAD  522 (524)
T ss_pred             HHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence            566789999999999999999999999998765554

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.96  E-value=2.9e-27  Score=236.64  Aligned_cols=362  Identities=17%  Similarity=0.169  Sum_probs=258.0

Q ss_pred             cCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376           22 RNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK  101 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~  101 (414)
                      .+.+..++++++.++.+|+|+|++|++++..|++++++++++.+.+++++.+++.|+.++.+. ++.+|.+++++.+||+
T Consensus         7 ~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-~~~~~~~~~~~~~G~~   85 (415)
T COG0814           7 KTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-GKASITSLVEDYLGKK   85 (415)
T ss_pred             CCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccHHHHHHHHhCcc
Confidence            345678899999999999999999999999999999999999999999999999999875432 2259999999999996


Q ss_pred             cchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHH
Q 046376          102 LAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKT  181 (414)
Q Consensus       102 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~  181 (414)
                      ++...+. .+...+|+.+.+|.+..++.+++.++.....      +...+..+.+++..++.++++. ++...++..+.+
T Consensus        86 ~~~li~~-s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~------~~~~r~~~~lif~~~~~~l~~~-~~~~~lk~ts~l  157 (415)
T COG0814          86 GGILIGL-SYFFALYGLLVAYIVGIGNLLASFLGNQFGL------NPLPRKLGSLIFALVLAFLSWL-GTLAVLKITSLL  157 (415)
T ss_pred             hHHHHHH-HHHHHHHHHHHHHHhcchhHHHHHHHhhccc------CCcchHHHHHHHHHHHHHHHHh-chhHHHHHHHHH
Confidence            5555554 4555679999999999999999988753332      1134566777788888889999 999999999988


Q ss_pred             HHHHHHHHHHHHhhhhh---------------cc----------------cceeehhhhhhCCCCCCCCCcccchhHHHH
Q 046376          182 GTVTAVVYVTLLWALTI---------------RK----------------GHNLVLEIQGTLPSSKFNPSSQKMWRAVKI  230 (414)
Q Consensus       182 ~~~~~~~~~~i~~~~~~---------------~~----------------g~~~~~~i~~~m~~~~~~p~~~~~~~~~~~  230 (414)
                      .........+.......               .+                +|..+|+++++|+    ++++++.+|+...
T Consensus       158 ~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~----~~~~~~~~k~~~~  233 (415)
T COG0814         158 VFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMR----KNSKKAVRKAILI  233 (415)
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhc----cchhHHHHHHHHH
Confidence            86554333222221100               11                7999999999994    4555468899999


Q ss_pred             HHHHHHHHHhhhhhhhccccCcccCCccccccccccccC-------CCCcchHHHHHHHHHHHHHhhhhcccccchHHHH
Q 046376          231 SYMTIGMCSFPLALTGYWAYGNKVTAKEGLLSVFSQVHG-------HDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSL  303 (414)
Q Consensus       231 ~~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~g-------~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~l  303 (414)
                      +..+..++|...+.++|..+|+.+.+  +++++.+++.+       .....+.....+++..+.+..||--.....++.+
T Consensus       234 ~~~~~~vlyi~~~~~~~~~~~~~~~~--~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~  311 (415)
T COG0814         234 GSLIALVLYILVGFFVFGCFGSLVFG--NILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGL  311 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcccHH--HHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhh
Confidence            99999999999999999999999998  99999843211       0011112233344444544444433333444555


Q ss_pred             HHHhhh--hccCCCc-hhhH-HHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCCCcchHH
Q 046376          304 EFRYIF--KKQQQCP-RRVR-AAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWW  378 (414)
Q Consensus       304 e~~~~~--~~~~~~~-~~~r-~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~~~~~~~  378 (414)
                      ++.+.+  .++++.. ..+. .......+.....++...|..+.+++.+|+... .+.++.|...+.+....+..+.++.
T Consensus       312 ~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~  391 (415)
T COG0814         312 ADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFL  391 (415)
T ss_pred             hHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCch
Confidence            544432  1111111 1122 222223445667778889999999999999999 9999999999887754443332224


Q ss_pred             HHHhHHHHHHHHHHHHHHHH
Q 046376          379 LNLGLGCFGIILSVMLVVAT  398 (414)
Q Consensus       379 ~~~~li~~g~~~~v~g~~~s  398 (414)
                      ...+++++|+..+....++.
T Consensus       392 ~~~~v~~~Gi~~~~~~~~~~  411 (415)
T COG0814         392 LLLLVLLFGILVILSPFLAT  411 (415)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            67777777777766655543

>PRK10483 tryptophan permease; Provisional

Probab=99.86  E-value=7.1e-20  Score=181.12  Aligned_cols=326  Identities=14%  Similarity=0.090  Sum_probs=222.0

Q ss_pred             ccccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376           19 TASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        19 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      .++++++.+++++-+..+.+|+|+|+||.+-+..|+.+++++++++.+...||..+++|.+.+.  ++..++..++|+.+
T Consensus         6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~--~~g~~~~tma~~~L   83 (414)
T PRK10483          6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY--RIGSSFDTITKDLL   83 (414)
T ss_pred             cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHc
Confidence            3556788999999999999999999999999999999999999999999999999999997643  23578999999999


Q ss_pred             CCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhh-ccCccchhh
Q 046376           99 GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQL-LPNLNSVLK  177 (414)
Q Consensus        99 G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l-~~~l~~l~~  177 (414)
                      || .++++..+.++.+.|+.+++|+--.|+.+++.++. .+.       ..+.+.-.++++++.-...+. .|..++...
T Consensus        84 G~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~~-------~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~  154 (414)
T PRK10483         84 GK-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MSL-------NVPARAAGFGFALLVAFVVWLSTKAVSRMTA  154 (414)
T ss_pred             Ch-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cCC-------CCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99 46677777777788999999999999999887754 111       112222223334333333332 011222222


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhc-----------------------------ccceeehhhhhhCCCCCCCCCcccchhHH
Q 046376          178 FSKTGTVTAVVYVTLLWALTIR-----------------------------KGHNLVLEIQGTLPSSKFNPSSQKMWRAV  228 (414)
Q Consensus       178 ~s~~~~~~~~~~~~i~~~~~~~-----------------------------~g~~~~~~i~~~m~~~~~~p~~~~~~~~~  228 (414)
                      .-..+.+..++..+......+.                             ..|+++|++.+.++   +|+  ++.+|++
T Consensus       155 ~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~--~kir~~I  229 (414)
T PRK10483        155 IVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDP--KTIVKCL  229 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCH--HHHHHHH
Confidence            2122211111111111100000                             07899999998884   233  3678999


Q ss_pred             HHHHHHHHHHHhh--hhhhhccc---------cCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhccccc
Q 046376          229 KISYMTIGMCSFP--LALTGYWA---------YGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAM  297 (414)
Q Consensus       229 ~~~~~~~~~~Y~~--~g~~gy~~---------fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~  297 (414)
                      ..+..+..++|+.  ..+.|-..         -|++++   ..++.+.   +..+..+...+...+..+.+.+||--...
T Consensus       230 ~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~---~L~~~l~---~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~L  303 (414)
T PRK10483        230 VYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID---VLVQALS---GVLNSRSLDLLLVVFSNFAVASSFLGVTL  303 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH---HHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987  33333222         122221   2223332   11233355567788888899999988888


Q ss_pred             chHHHHHHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCC-chhhhhhhccccccchhhhhhhhhhhhcCC
Q 046376          298 PAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPF-FPSLAPFMGGLTLPFKFSYPCLMYNLIKKP  370 (414)
Q Consensus       298 p~~~~le~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~-~~~v~~l~Ga~~~~l~filP~l~~l~~~k~  370 (414)
                      .++|.+++.++.+++.+    .|...-.+..+.+.++|.+.|+ |=..+++.|..+..+..++|+++.+|.||+
T Consensus       304 GL~d~l~D~~k~~~~~~----~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        304 GLFDYLADLFGFDDSAM----GRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKR  373 (414)
T ss_pred             HHHHHHHHHhCCCCccc----cceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999988776543211    2333334566889999999998 778999999774477889999999999875

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.85  E-value=1.4e-19  Score=180.14  Aligned_cols=324  Identities=19%  Similarity=0.181  Sum_probs=214.2

Q ss_pred             CCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCcc
Q 046376           23 NGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKL  102 (414)
Q Consensus        23 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~  102 (414)
                      +.+.+++++-+..+.+|+|+|+||.+.+..|..+++++++++...++++..++.|...+.  ++..+|.+++++.+||+ 
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~--~~~~~~~~~a~~~lG~~-   78 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT--PEGSSLTSMAEKYLGKK-   78 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHhChH-
Confidence            456788999999999999999999999999999999999999999999999999997543  23579999999999995 


Q ss_pred             chhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhc-cCccchhhHHHH
Q 046376          103 AKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLL-PNLNSVLKFSKT  181 (414)
Q Consensus       103 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~-~~l~~l~~~s~~  181 (414)
                      ++++..+.++...|+.+++|....++.+++.++...+.       ..+.+.-.+++.++.-.+.... |-.++....-..
T Consensus        79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~-------~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~  151 (394)
T PF03222_consen   79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT-------DLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVF  151 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            55555556666779999999999999998877653211       1112222222322222222220 111221111111


Q ss_pred             HHHHHHHHHHHHhhhhh------------cc----------------cceeehhhhhhCCCCCCCCCcccchhHHHHHHH
Q 046376          182 GTVTAVVYVTLLWALTI------------RK----------------GHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYM  233 (414)
Q Consensus       182 ~~~~~~~~~~i~~~~~~------------~~----------------g~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~  233 (414)
                      +.+..+....+......            .+                .|+++|++.+.++   +|  .++.+|++..+..
T Consensus       152 ~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~---~d--~~k~~~ai~~Gs~  226 (394)
T PF03222_consen  152 GMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLG---GD--PKKIRKAIIIGSL  226 (394)
T ss_pred             HHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhC---cc--HHHHHHHHHHHHH
Confidence            11111111111111000            00                6899999999884   23  3456799999988


Q ss_pred             HHHHHHhhh--hhhhcc---------ccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHH
Q 046376          234 TIGMCSFPL--ALTGYW---------AYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDS  302 (414)
Q Consensus       234 ~~~~~Y~~~--g~~gy~---------~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~  302 (414)
                      +..++|++.  .++|-.         .-+++.+   .+...+.   ...++.+...+..++..+.+.+||--...-++|.
T Consensus       227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~---~~~~~~~---~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~  300 (394)
T PF03222_consen  227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVS---ALVSALA---NVSGSPWISILGSIFAFFAIATSFLGVYLGLFDF  300 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChH---HHHHHHH---hhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888764  333311         1122222   2222221   1123345566778899999999998888888999


Q ss_pred             HHHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCC-chhhhhhhccccc-cchhhhhhhhhhhhcCCCC
Q 046376          303 LEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPF-FPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQ  372 (414)
Q Consensus       303 le~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~-~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~  372 (414)
                      +++.++.+ ++.   ..|...-....+.+.++|...|+ |-..+++.| ... .+..++|+++.+|.||+++
T Consensus       301 l~d~~k~~-~~~---~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~  367 (394)
T PF03222_consen  301 LADLFKLK-NNS---SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP  367 (394)
T ss_pred             HHHHHcCC-ccc---cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence            98877542 222   22333344456778888999997 788999999 777 9999999999999976554

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.85  E-value=1.6e-19  Score=178.48  Aligned_cols=325  Identities=14%  Similarity=0.078  Sum_probs=218.0

Q ss_pred             cccccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHh
Q 046376           18 LTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAA   97 (414)
Q Consensus        18 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~   97 (414)
                      +.|++ .+.+.+++-+..+.+|+|+|+||.+-+..|+.+++++++++.+...||..+++|.+.+.  ++..++..++|+.
T Consensus         4 ~~~~~-~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~--~~g~~l~tma~~~   80 (415)
T PRK09664          4 QAEKK-HSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY--PVGSSFNTITKDL   80 (415)
T ss_pred             chhhc-cchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHH
Confidence            33444 47778999999999999999999999999999999999999999999999999997644  2457899999999


Q ss_pred             cCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhcc--Cccch
Q 046376           98 FGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLP--NLNSV  175 (414)
Q Consensus        98 ~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~--~l~~l  175 (414)
                      +|| .++++..+.++.+.|+.+++|+--.|+.+++.++...+.       ..+.+.-.++++++.-...+. .  ..++.
T Consensus        81 LG~-~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~-------~i~~~~~~llF~~~~~~~v~~-gt~~vd~~  151 (415)
T PRK09664         81 IGN-TWNIISGITVAFVLYILTYAYISANGAIISETISMNLGY-------HANPRIVGICTAIFVASVLWI-SSLAASRI  151 (415)
T ss_pred             cCh-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccC-------CCcHHHHHHHHHHHHHHHHHh-chhHHHHH
Confidence            999 577777777777789999999999999998877532111       111122223333333333332 1  11111


Q ss_pred             hhHHHHHHHHHHHHHHHHh--------------------------------hhhhcccceeehhhhhhCCCCCCCCCccc
Q 046376          176 LKFSKTGTVTAVVYVTLLW--------------------------------ALTIRKGHNLVLEIQGTLPSSKFNPSSQK  223 (414)
Q Consensus       176 ~~~s~~~~~~~~~~~~i~~--------------------------------~~~~~~g~~~~~~i~~~m~~~~~~p~~~~  223 (414)
                      ...-..+.+..++..+...                                ..+.. .|+++|++.+.++   +|+  ++
T Consensus       152 nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFg-fh~iIPsl~~y~~---~d~--~~  225 (415)
T PRK09664        152 TSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFG-FHGNIPSLIICYG---KRK--DK  225 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhh-CCCcchHHHHHhC---ccH--HH
Confidence            1111111111111111100                                00111 6899999998874   333  34


Q ss_pred             chhHHHHHHHHHHHHHhh--hhhhhcc---------ccCcccCCccccccccccccCCCCcchHHHHHHHHHHHHHhhhh
Q 046376          224 MWRAVKISYMTIGMCSFP--LALTGYW---------AYGNKVTAKEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQF  292 (414)
Q Consensus       224 ~~~~~~~~~~~~~~~Y~~--~g~~gy~---------~fG~~~~~~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sy  292 (414)
                      .+|++.....+..++|+.  ..++|-.         .-|++++   .++..+.+   .....+...+...+..+.+.+||
T Consensus       226 ~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~---~l~~s~~~---~~~~~~i~~~~~~Fa~~Ai~TSF  299 (415)
T PRK09664        226 LIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVD---SLVKSFLG---TKQHGIIEFCLLVFSNLAVASSF  299 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCch---HHHHHHHh---hccChHHHHHHHHHHHHHHHHHH
Confidence            568888888888888855  2233311         2233333   23333321   12334666778888889999999


Q ss_pred             cccccchHHHHHHHhhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCC-chhhhhhhccccccchhhhhhhhhhhhcCC
Q 046376          293 QIYAMPAFDSLEFRYIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPF-FPSLAPFMGGLTLPFKFSYPCLMYNLIKKP  370 (414)
Q Consensus       293 pl~~~p~~~~le~~~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~-~~~v~~l~Ga~~~~l~filP~l~~l~~~k~  370 (414)
                      --....++|.+++.++.+++++    .|...-.+..+.+.++|.+.|+ |=..++..|..+..+.-++|+++-+|.||+
T Consensus       300 lGv~LGL~D~l~D~~~~~~~~~----~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        300 FGVTLGLFDYLADLFKIDNSHG----GRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             HHHHHHHHHHHHHHhCCCCccc----cceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8888889999988776543221    2333334566889999999998 778999999964488889999999999875

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.84  E-value=6.4e-19  Score=174.89  Aligned_cols=345  Identities=19%  Similarity=0.146  Sum_probs=226.2

Q ss_pred             CceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccc
Q 046376           24 GNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLA  103 (414)
Q Consensus        24 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~  103 (414)
                      ++.+.+++.+..+.+|+|+|+||.+.+..|+++++++++++..+..|++.++.|++.+.  ++..++.+++|+.+||+ +
T Consensus         3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~--~~~~~~~~~a~~~LG~~-g   79 (403)
T PRK15132          3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV--PADTGLGTLAKRYLGRY-G   79 (403)
T ss_pred             ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCHHHHHHHHhChH-H
Confidence            35678999999999999999999999999999999999999998999999999986543  23468999999999995 5


Q ss_pred             hhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHH---H
Q 046376          104 KSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFS---K  180 (414)
Q Consensus       104 ~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s---~  180 (414)
                      .++..+.++...|..+.+|....|+.+.+..+...+++       .+.+...+++.++.-...+.  ..|...+.+   .
T Consensus        80 ~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~-------i~~~~~~l~F~~~~~~iv~~--g~~~v~~~n~~L~  150 (403)
T PRK15132         80 QWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS-------MSPTAGVLLFTLVAGGVVCV--GTSSVDLFNRFLF  150 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC-------CChHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence            55666666777799999999999999888776533321       11222333333332222222  112221111   1


Q ss_pred             HHHHHHHHHHHHHhhh--------------------------hhcccceeehhhhhhCCCCCCCCCcccchhHHHHHHHH
Q 046376          181 TGTVTAVVYVTLLWAL--------------------------TIRKGHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMT  234 (414)
Q Consensus       181 ~~~~~~~~~~~i~~~~--------------------------~~~~g~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~  234 (414)
                      .+.+..++........                          +.. .|+++|++.+.++     .+.++.+|++..+..+
T Consensus       151 ~~~ii~~~~~~~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFg-fh~iIpsl~~y~~-----~~~~~~~k~i~~Gs~i  224 (403)
T PRK15132        151 SAKIIFLVVMLALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFG-FHGSVPSIVSYMG-----GNIRKLRWVFIIGSAI  224 (403)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhh-CCcccHHHHHHhC-----cCHHHHHHHHHHHHHH
Confidence            1111111111111100                          000 7899999999883     2335678999999999


Q ss_pred             HHHHHhhhhhhhccccCcc-----cCC---ccccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHHH
Q 046376          235 IGMCSFPLALTGYWAYGNK-----VTA---KEGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFR  306 (414)
Q Consensus       235 ~~~~Y~~~g~~gy~~fG~~-----~~~---~~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~~  306 (414)
                      ..++|+..=......-+.+     .++   .+++++.+...   .+..|...+...+..+.+.+||--....++|.+++.
T Consensus       225 ~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~  301 (403)
T PRK15132        225 PLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREV---VASPHVELAVHLFADLALATSFLGVALGLFDYLADL  301 (403)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHH---ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998876333322222211     111   01344444321   233466677888888899999988888899999887


Q ss_pred             hhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCC-chhhhhhhccccccchhhhhhhhhhhhcCCC-CCcc----hHHHH
Q 046376          307 YIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPF-FPSLAPFMGGLTLPFKFSYPCLMYNLIKKPD-QSGT----LWWLN  380 (414)
Q Consensus       307 ~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~-~~~v~~l~Ga~~~~l~filP~l~~l~~~k~~-~~~~----~~~~~  380 (414)
                      +.+++++    ..|...-.+..+.+.++|...|+ |...+++.|.....+.+++|+++.+|.||++ +.+.    .+..+
T Consensus       302 ~~~~~~~----~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~  377 (403)
T PRK15132        302 FQRRNTV----GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPAL  377 (403)
T ss_pred             HccCccc----cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHH
Confidence            7543221    12444445567888999999998 8888999887533999999999999998654 2121    24456


Q ss_pred             HhHHHHHHHHHHH
Q 046376          381 LGLGCFGIILSVM  393 (414)
Q Consensus       381 ~~li~~g~~~~v~  393 (414)
                      ++..++|++.-+.
T Consensus       378 ~~v~~~G~~~i~~  390 (403)
T PRK15132        378 ALVFLCGIAVIGI  390 (403)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666554443

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.83  E-value=2.5e-19  Score=178.68  Aligned_cols=317  Identities=14%  Similarity=0.096  Sum_probs=214.8

Q ss_pred             hhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhh
Q 046376           29 TVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCV  108 (414)
Q Consensus        29 a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~  108 (414)
                      +++.++++++|+|++++|.+++..|+..+.+++++.+..+.++...+.|+..+.|  +..+|.+.+++++||+.+....+
T Consensus         2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p--~~~~~~~~~~~~~G~~~g~~~~~   79 (381)
T TIGR00837         2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP--GGASFNTIAKDLLGKTGNIIAGL   79 (381)
T ss_pred             ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHHhCHHHHHHHHH
Confidence            3456788999999999999999999999999999999999999999999976543  34689999999999965555544


Q ss_pred             HhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHHHHHHHHH
Q 046376          109 FPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVV  188 (414)
Q Consensus       109 ~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~~~~~~~~  188 (414)
                      .. ...++..+.+|.+..++.+..+++.....       ..+.+...+++.+++.++..  +..+...+++.+.+...+.
T Consensus        80 ~~-~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~v~~~l~~--~G~~~~~~v~~i~~~~~l~  149 (381)
T TIGR00837        80 SL-LFVLYILTYAYISGGGSILSRLIGEYFGF-------PWSARAIVLIFTVLFGSFVW--LSTSAVDRITRVLIFGKII  149 (381)
T ss_pred             HH-HHHHHHHHHHHHHccHHHHHHHHHHhcCC-------CccHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHH
Confidence            44 44569999999999999988877642221       11222333334444444433  3566666666555443332


Q ss_pred             HHHHHhhhhhcc-------------------------------cceeehhhhhhCCCCCCCCCcccchhHHHHHHHHHHH
Q 046376          189 YVTLLWALTIRK-------------------------------GHNLVLEIQGTLPSSKFNPSSQKMWRAVKISYMTIGM  237 (414)
Q Consensus       189 ~~~i~~~~~~~~-------------------------------g~~~~~~i~~~m~~~~~~p~~~~~~~~~~~~~~~~~~  237 (414)
                      ...+....+..+                               .|.++|++.+++    +|+ +|+++|++..+..++++
T Consensus       150 ~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~  224 (381)
T TIGR00837       150 AFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALV  224 (381)
T ss_pred             HHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHH
Confidence            222111111110                               345677777777    445 56789999999999999


Q ss_pred             HHhhhhhhhccccCcccCC-----c---cccccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHHHhhh
Q 046376          238 CSFPLALTGYWAYGNKVTA-----K---EGLLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIF  309 (414)
Q Consensus       238 ~Y~~~g~~gy~~fG~~~~~-----~---~~il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~~~~~  309 (414)
                      +|...........+.+.-.     .   ++.++.+..   ..+..|...+...+..+.+..|+.-.....++.+++.+.+
T Consensus       225 lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~  301 (381)
T TIGR00837       225 LYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQG---VLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKF  301 (381)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHH---hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9998765554444322110     0   011112210   0123355567788888899999998888889888877665


Q ss_pred             hccCCCchhhHHHHHHHHHHHHHHHHHHcCCch-hhhhhhccccc-cchhhhhhhhhhhhcCC
Q 046376          310 KKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFP-SLAPFMGGLTL-PFKFSYPCLMYNLIKKP  370 (414)
Q Consensus       310 ~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~-~v~~l~Ga~~~-~l~filP~l~~l~~~k~  370 (414)
                      +++++    +|.....+..+...++|.+.|+.. ..++..| +.. .+.+++|+++++|.||+
T Consensus       302 ~~~~~----~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       302 DDSKK----GRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             CcccC----CCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            32221    234444555677888899999865 8899999 667 99999999999998765

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.69  E-value=1e-14  Score=144.60  Aligned_cols=352  Identities=11%  Similarity=0.091  Sum_probs=209.9

Q ss_pred             hHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhH
Q 046376           30 VFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVF  109 (414)
Q Consensus        30 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~  109 (414)
                      ...+..+.+|+|+|+||-.....|..+.+++++++..+++|+...+.|.....+ ++..+|.+++|+.+|++++.+....
T Consensus        25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~-~~~~~i~~v~~~~lG~~g~~i~~il  103 (443)
T PRK13629         25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS-NPSGNITETVEEHFGKTGGVVITFL  103 (443)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCCHHHHHHHHcChhHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999864321 2456899999999999766655544


Q ss_pred             hHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhcc-CccchhhHHHHHHHHHH-
Q 046376          110 PVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLP-NLNSVLKFSKTGTVTAV-  187 (414)
Q Consensus       110 ~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~-~l~~l~~~s~~~~~~~~-  187 (414)
                       ++...|..+.+|.....+.++.......+.      ...+++...+++.+++.......+ -+.+..-.-....+.++ 
T Consensus       104 -Yff~ly~ll~aY~~~itn~l~sfl~~ql~~------~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~  176 (443)
T PRK13629        104 -YFFAICPLLWIYGVTITNTFMTFWENQLGF------APLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLV  176 (443)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhhcCc------CCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence             445569999999977777666533221110      011222222222222222211100 01111100001100000 


Q ss_pred             -----------------------------------HHHHHHhhhhhcccceeehhhhhhCCCCCC---CCC--cccchhH
Q 046376          188 -----------------------------------VYVTLLWALTIRKGHNLVLEIQGTLPSSKF---NPS--SQKMWRA  227 (414)
Q Consensus       188 -----------------------------------~~~~i~~~~~~~~g~~~~~~i~~~m~~~~~---~p~--~~~~~~~  227 (414)
                                                         ....-++..++. .|+.+|++....+++++   +++  .++.+|+
T Consensus       177 ~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~-f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ri  255 (443)
T PRK13629        177 LISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFN-FSPIVSSFVVSKREEYEKDFGRDFTERKCSQI  255 (443)
T ss_pred             HHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHhccccccchHHHHHHHH
Confidence                                               001111111111 67888888777544332   234  5677899


Q ss_pred             HHHHHHHHHHHHhhhhhhhccccCccc-----CCccccccccccccCCC-Cc-----chHHHHHHHHHHHHHhhhhcccc
Q 046376          228 VKISYMTIGMCSFPLALTGYWAYGNKV-----TAKEGLLSVFSQVHGHD-TS-----RGAMGSIYLLQIINCLCQFQIYA  296 (414)
Q Consensus       228 ~~~~~~~~~~~Y~~~g~~gy~~fG~~~-----~~~~~il~~~~~~~g~~-~~-----~~~~~i~~~~~~i~~~~sypl~~  296 (414)
                      +..+..+..++|++.-..+-..-+++.     ++-.++++.+.+..+.. +.     .+...+..++..+.+..||--..
T Consensus       256 i~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~  335 (443)
T PRK13629        256 ISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHY  335 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888876655544444322     11013344432211110 11     23455566777778888998888


Q ss_pred             cchHHHHHHHhhh---hc-cCCCc-hhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCC
Q 046376          297 MPAFDSLEFRYIF---KK-QQQCP-RRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKP  370 (414)
Q Consensus       297 ~p~~~~le~~~~~---~~-~~~~~-~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~  370 (414)
                      ..++|.++....+   +. +++.+ +..+.....+.++.++.+|..=|++=++++-+|+--. .+.|++|...-.|...-
T Consensus       336 LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l  415 (443)
T PRK13629        336 LGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSL  415 (443)
T ss_pred             HHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHH
Confidence            8889888877632   11 11122 2223333445556677777887887777776666555 88899999888777433


Q ss_pred             CCCcchHHHHHhHHHHHHHHH
Q 046376          371 DQSGTLWWLNLGLGCFGIILS  391 (414)
Q Consensus       371 ~~~~~~~~~~~~li~~g~~~~  391 (414)
                      ++++- +..|+++.+.|++.-
T Consensus       416 ~~yr~-~~~n~fv~~~Gl~~i  435 (443)
T PRK13629        416 AKYRG-RLDNVFVTVIGLLTI  435 (443)
T ss_pred             HHhCC-CchhHHHHHHHHHHH
Confidence            33322 225777777776643

>TIGR00814 stp serine transporter

Probab=99.65  E-value=5.2e-15  Score=147.27  Aligned_cols=345  Identities=13%  Similarity=0.105  Sum_probs=204.6

Q ss_pred             hHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhH
Q 046376           30 VFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVF  109 (414)
Q Consensus        30 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~  109 (414)
                      .+.+..+.+|+|+|++|...++.||+..++..++...+++++..++.|.....+. +..++.|++++.|||++|+.....
T Consensus         9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G~ii~~l   87 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWGILITLL   87 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHHHHHHHH
Confidence            7889999999999999999999999988888888888888998888887432211 246899999999999888877766


Q ss_pred             hHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHHHHHHHHHHH
Q 046376          110 PVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSKTGTVTAVVY  189 (414)
Q Consensus       110 ~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~~~~~~~~~~  189 (414)
                      -.+.. +..+.+|....++.+..........      +. +.+....+..+..+-.... ...+.+...+-+-....+..
T Consensus        88 Y~~~~-~~i~~aY~~~~~~~~~~fl~~~~~~------~~-p~~~i~~lilv~il~~iv~-~G~~~i~r~~~il~~~~ii~  158 (397)
T TIGR00814        88 YFFAI-YPILLIYSVAITNDSASFLVNQLGT------AP-PLRGLLSLALILILVAIMS-FGEKLLFKIMGPLVFPLVLI  158 (397)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC------CC-cHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHH
Confidence            55544 8888899988888877765532211      01 1121111111111111112 23344333332221111111


Q ss_pred             HHHHhhhhhcc-------------------------------cceeehhhhhhCCCCCCCCC--cccchhHHHHHHHHHH
Q 046376          190 VTLLWALTIRK-------------------------------GHNLVLEIQGTLPSSKFNPS--SQKMWRAVKISYMTIG  236 (414)
Q Consensus       190 ~~i~~~~~~~~-------------------------------g~~~~~~i~~~m~~~~~~p~--~~~~~~~~~~~~~~~~  236 (414)
                      ..+.....+++                               +|.++|+...+.++++++|+  +++.+|++..+..+..
T Consensus       159 l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~  238 (397)
T TIGR00814       159 LVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILV  238 (397)
T ss_pred             HHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence            11111000000                               78888888633332234343  5667899999999988


Q ss_pred             HHHhhhhhhhccccCccc-CC--ccc--cccccccccCCCCcchHHHHHHHHHHHHHhhhhcccccchHHHHHHHhhh-h
Q 046376          237 MCSFPLALTGYWAYGNKV-TA--KEG--LLSVFSQVHGHDTSRGAMGSIYLLQIINCLCQFQIYAMPAFDSLEFRYIF-K  310 (414)
Q Consensus       237 ~~Y~~~g~~gy~~fG~~~-~~--~~~--il~~~~~~~g~~~~~~~~~i~~~~~~i~~~~sypl~~~p~~~~le~~~~~-~  310 (414)
                      ++|+..-.......+.+. .+  .+|  .+..+.+   ..+..+...+...+..+.+..||--....+++.+++.+.+ +
T Consensus       239 ~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~---~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~  315 (397)
T TIGR00814       239 ATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLAN---HFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSL  315 (397)
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHh---hcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            888876665555554332 11  012  2222211   1122244455667777788888888888889988887632 1


Q ss_pred             cc--CCCc-hhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCCCCCcchHHHHHhHHHH
Q 046376          311 KQ--QQCP-RRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKPDQSGTLWWLNLGLGCF  386 (414)
Q Consensus       311 ~~--~~~~-~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~~~~~~~~~~~~~li~~  386 (414)
                      ++  ++.+ +..+.....+.++.++.+|..=|++=++++-+|+--. .+.|++|...-.|...-++++-+ +.|+++.+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~-~~~~fv~~~  394 (397)
T TIGR00814       316 KMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRGR-ISNVFVTVI  394 (397)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCC-cchheeEee
Confidence            11  1122 2222333334456677777777887777775555555 88899999887777433333222 246666655


Q ss_pred             HH
Q 046376          387 GI  388 (414)
Q Consensus       387 g~  388 (414)
                      |+
T Consensus       395 g~  396 (397)
T TIGR00814       395 GL  396 (397)
T ss_pred             ec
Confidence            53

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10655 potE putrescine transporter; Provisional

Probab=99.01  E-value=1.2e-07  Score=96.36  Aligned_cols=89  Identities=13%  Similarity=0.030  Sum_probs=63.2

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG   99 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G   99 (414)
                      ++|+-+.++++...+++++|+|++.+|..+++.|- .+++..++.+++.........|...+.|.  .-..-.-+++.+|
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~--~GG~y~y~~~~~G   80 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK--SGGMGGYAEYAFG   80 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC--CCchHHHHHHHcC
Confidence            35667889999999999999999999999998886 46666666666666666666776533322  1223445668899


Q ss_pred             CccchhhhhHhH
Q 046376          100 PKLAKSLCVFPV  111 (414)
Q Consensus       100 ~~~~~~~~~~~~  111 (414)
                      |..+....+...
T Consensus        81 ~~~gf~~gw~~~   92 (438)
T PRK10655         81 KSGNFMANYTYG   92 (438)
T ss_pred             cchHHHHHHHHH
Confidence            977766666543

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.88  E-value=8.4e-07  Score=90.47  Aligned_cols=88  Identities=17%  Similarity=0.227  Sum_probs=58.3

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCc-cccCHHHHHHHhc
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGT-RYSRYMQVAKAAF   98 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~-~~~sy~~l~~~~~   98 (414)
                      ++|+-+.++++...+++++|+|++.+|...++.|.. .+...++.++...-......|.....|.. ....|   +++.+
T Consensus         6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~---~~~~~   81 (445)
T PRK10644          6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAY---ARRCF   81 (445)
T ss_pred             cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHH---HHHHc
Confidence            456678889999999999999999999998887742 33344444444444455556664433321 12334   77889


Q ss_pred             CCccchhhhhHhH
Q 046376           99 GPKLAKSLCVFPV  111 (414)
Q Consensus        99 G~~~~~~~~~~~~  111 (414)
                      ||..+....+...
T Consensus        82 g~~~gf~~gw~~~   94 (445)
T PRK10644         82 GPFLGYQTNVLYW   94 (445)
T ss_pred             CchHHHHHHHHHH
Confidence            9977776655444

>PRK11021 putative transporter; Provisional

Probab=98.77  E-value=6.2e-06  Score=83.15  Aligned_cols=85  Identities=14%  Similarity=0.134  Sum_probs=57.4

Q ss_pred             ceehhhHHHHhhhhhhhhchhHHHHHhh-ChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccc
Q 046376           25 NTFSTVFHIVSSGIGIQALFLPVGFATL-GWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLA  103 (414)
Q Consensus        25 s~~~a~~~l~~~~iG~GiL~LP~af~~~-G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~  103 (414)
                      ++|+++.-.+++++|+|++.+|....+. |- ..++..++.++..........|...+.|+.  -..-.-+++.+||+++
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~a--GG~y~y~~~~~G~~~g   78 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHA--GGPAHFVGMAFGPRLG   78 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHhHHHHhCchhH
Confidence            4578888999999999999999875554 53 355556666666666666666665443321  2334566788999888


Q ss_pred             hhhhhHhHH
Q 046376          104 KSLCVFPVW  112 (414)
Q Consensus       104 ~~~~~~~~~  112 (414)
                      ....+....
T Consensus        79 f~~gw~~~~   87 (410)
T PRK11021         79 RVTGWLFLS   87 (410)
T ss_pred             HHHHHHHHH
Confidence            777665543

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.76  E-value=2.2e-06  Score=88.02  Aligned_cols=87  Identities=21%  Similarity=0.083  Sum_probs=57.0

Q ss_pred             CCceehhhHHHHhhhhhhhhchhHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--cccCHHHHHHHhcC
Q 046376           23 NGNTFSTVFHIVSSGIGIQALFLPVGFAT-LGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGT--RYSRYMQVAKAAFG   99 (414)
Q Consensus        23 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~--~~~sy~~l~~~~~G   99 (414)
                      +-+.++.+...+++++|+|++.+|....+ .|....++..++.++..........|...+.|+.  ....|   +++.||
T Consensus         2 ~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y---~~~~fG   78 (468)
T TIGR03810         2 KLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSY---AKAGFG   78 (468)
T ss_pred             CCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhh---HHhHcC
Confidence            45677888999999999999999988554 4533233445555555555666666665443321  23344   788999


Q ss_pred             CccchhhhhHhHH
Q 046376          100 PKLAKSLCVFPVW  112 (414)
Q Consensus       100 ~~~~~~~~~~~~~  112 (414)
                      |..+....+...+
T Consensus        79 ~~~gf~~gw~~w~   91 (468)
T TIGR03810        79 PFMGFISAWGYWL   91 (468)
T ss_pred             cHHHHHHHHHHHH
Confidence            9777766665443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.75  E-value=4.3e-06  Score=85.05  Aligned_cols=109  Identities=17%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG   99 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G   99 (414)
                      ++|+-+.++.+.-.+++++|+|++.+|...++.|-. .+...++.++..........|...+.|..  -..-+-+++ +|
T Consensus         3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~--GG~y~y~~~-~g   78 (435)
T PRK10435          3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQ--GGPIAYAGE-IS   78 (435)
T ss_pred             CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CChhHHHHH-HC
Confidence            456678889999999999999999999999988853 44455555555555555566665443322  122233456 68


Q ss_pred             CccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHH
Q 046376          100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLETL  133 (414)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~  133 (414)
                      |.++....+.-.... +....++.+...+.+...
T Consensus        79 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~y~~~~  111 (435)
T PRK10435         79 PAFGFQTGVLYYHAN-WIGNLAIGITAVSYLSTF  111 (435)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            877766655433222 233344444444555443

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.75  E-value=2.2e-06  Score=88.08  Aligned_cols=113  Identities=16%  Similarity=0.074  Sum_probs=68.8

Q ss_pred             ccCCceehhhHHHHhhhhhhhhchhHHHHHhhChh-HHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376           21 SRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWT-WGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG   99 (414)
Q Consensus        21 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~-~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G   99 (414)
                      +|+-+.+++++..+++++|+|++.+|....+.|=. ..++..++.++..........|...+.|++ .-..-+-+++.+|
T Consensus         6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~-sGG~y~y~~~~~G   84 (473)
T TIGR00905         6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL-DGGIYAYAREGFG   84 (473)
T ss_pred             CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCChhhhHHhHcc
Confidence            45678899999999999999999999998765422 123334444555555555556665433320 1123335588899


Q ss_pred             CccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHH
Q 046376          100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYK  135 (414)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~  135 (414)
                      |..+....+...... .....++.....+.+..+++
T Consensus        85 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~~p  119 (473)
T TIGR00905        85 PYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGYFFP  119 (473)
T ss_pred             cccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence            987877776554332 23344454444455555443

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00909 2A0306 amino acid transporter

Probab=98.74  E-value=1.7e-06  Score=87.75  Aligned_cols=111  Identities=17%  Similarity=0.070  Sum_probs=70.4

Q ss_pred             ccCCceehhhHHHHhhhhhhhhchhHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376           21 SRNGNTFSTVFHIVSSGIGIQALFLPVGFAT-LGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG   99 (414)
Q Consensus        21 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G   99 (414)
                      +|+-+.++.++-.+++++|+|++.+|..... .|. .+.+..++.++..........|...+.|+.  -..-+-.++.+|
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~--Gg~y~~~~~~~G   78 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVA--GSPYTYAYEAMG   78 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CcceeeHHHHhC
Confidence            3556788899999999999999999976553 444 244445555666666666666665443321  122345567899


Q ss_pred             CccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHH
Q 046376          100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYK  135 (414)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~  135 (414)
                      |+.+....+...+.. ...+..+....++.+..+++
T Consensus        79 ~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~~~  113 (429)
T TIGR00909        79 ELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEFLP  113 (429)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            987877776654432 33444556666666666554

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.73  E-value=4.1e-06  Score=86.02  Aligned_cols=90  Identities=12%  Similarity=0.040  Sum_probs=63.5

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPV-GFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      .+|+-+.++...-.+++++|+|++-.|. +++++|. ..+...++.+++......-+.|....  +....++.+.+++.+
T Consensus        18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~--~~~~~~~~~ya~~~~   94 (469)
T PRK11049         18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS--NLEYKSFSDFASDLL   94 (469)
T ss_pred             hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcHHHHHHHHh
Confidence            4566788889999999999999999766 7788887 34555555566665555556666432  122335678899999


Q ss_pred             CCccchhhhhHhHH
Q 046376           99 GPKLAKSLCVFPVW  112 (414)
Q Consensus        99 G~~~~~~~~~~~~~  112 (414)
                      |+..+....+...+
T Consensus        95 g~~~gf~~gW~~~~  108 (469)
T PRK11049         95 GPWAGYFTGWTYWF  108 (469)
T ss_pred             CcHHHHHHHHHHHH
Confidence            99777777766544

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.70  E-value=4.1e-06  Score=85.59  Aligned_cols=108  Identities=16%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLP-VGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      .+|+-+.++..+..+++++|+|++.+| .+.+.+|-. +.+..++.+++....+..+.|...+.|.  .-.+-+.+++.+
T Consensus        10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~--~Gg~~~~~~~~~   86 (452)
T TIGR01773        10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPD--TGSFSTYADDAI   86 (452)
T ss_pred             HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHh
Confidence            456677888999999999999999999 667788863 6666666777777677777777544332  234567788999


Q ss_pred             CCccchhhhhHhHHHhhhhhhHHHHHHHHhhHH
Q 046376           99 GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLE  131 (414)
Q Consensus        99 G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~  131 (414)
                      ||..+....+...... ...+.+.....++.++
T Consensus        87 g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~  118 (452)
T TIGR01773        87 GRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQ  118 (452)
T ss_pred             CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9977776666544332 2333334444444443

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK15049 L-asparagine permease; Provisional

Probab=98.67  E-value=5.9e-06  Score=85.45  Aligned_cols=88  Identities=13%  Similarity=0.073  Sum_probs=62.7

Q ss_pred             cCCceehhhHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376           22 RNGNTFSTVFHIVSSGIGIQALFLPV-GFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~  100 (414)
                      |+-+.++..+--+.+++|+|++..|. +.+.+|- .+++..++.+++....+.-+.|.....|.  .-..-+-+++.+|+
T Consensus        28 r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~--aGg~y~y~~~~~G~  104 (499)
T PRK15049         28 KAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS--SGSFVSYAREFLGE  104 (499)
T ss_pred             ccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhCc
Confidence            34567888899999999999998887 6777785 45666666677777777777777544332  23556677888999


Q ss_pred             ccchhhhhHhHH
Q 046376          101 KLAKSLCVFPVW  112 (414)
Q Consensus       101 ~~~~~~~~~~~~  112 (414)
                      +.+..+.+...+
T Consensus       105 ~~gf~~GW~~~l  116 (499)
T PRK15049        105 KAAYVAGWMYFI  116 (499)
T ss_pred             HhHHHHHHHHHH
Confidence            777766665443

>PRK10249 phenylalanine transporter; Provisional

Probab=98.67  E-value=6.5e-06  Score=84.26  Aligned_cols=101  Identities=12%  Similarity=-0.084  Sum_probs=68.9

Q ss_pred             CCCCCCCCCccc--cccCCceehhhHHHHhhhhhhhhchhHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 046376            8 QPNSLDDWLPLT--ASRNGNTFSTVFHIVSSGIGIQALFLPVGF-ATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPG   84 (414)
Q Consensus         8 ~~~~~~~~~~~~--~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~   84 (414)
                      ..++.|+-.++.  -+|+-+.++..+-.+.+++|+|++..|... +++|- ..++..++.+++....+.-+.|...+.|.
T Consensus         5 ~~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~   83 (458)
T PRK10249          5 STVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV   83 (458)
T ss_pred             cccchhhccCCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            334444444443  335567788899999999999999988664 45575 36666666777777777777777654432


Q ss_pred             ccccCHHHHHHHhcCCccchhhhhHhH
Q 046376           85 TRYSRYMQVAKAAFGPKLAKSLCVFPV  111 (414)
Q Consensus        85 ~~~~sy~~l~~~~~G~~~~~~~~~~~~  111 (414)
                        .-.+-+.+++.+|+.++....+...
T Consensus        84 --~Gg~~~y~~~~~g~~~gf~~gw~~~  108 (458)
T PRK10249         84 --SGSFAHFAYKYWGPFAGFLSGWNYW  108 (458)
T ss_pred             --CCCHHHHHHHHhChHHHHHHHHHHH
Confidence              2356667889999987777776543

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.66  E-value=4.6e-06  Score=85.70  Aligned_cols=90  Identities=16%  Similarity=0.100  Sum_probs=59.8

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHHH-HhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGF-ATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      -+|+-+.++.+.-.+++++|+|++..|... +.+|-...++..++.+++......-+.|.....|.  +-.+-.-+++.+
T Consensus        12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~--aGG~y~y~~~~~   89 (471)
T PRK11387         12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE--TGAFHVYAARYL   89 (471)
T ss_pred             hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHhc
Confidence            345578899999999999999999877764 66674333445555566666666666666543332  223456777889


Q ss_pred             CCccchhhhhHhH
Q 046376           99 GPKLAKSLCVFPV  111 (414)
Q Consensus        99 G~~~~~~~~~~~~  111 (414)
                      |+..+....+...
T Consensus        90 g~~~gf~~gw~~~  102 (471)
T PRK11387         90 GPATGYTVAWLYW  102 (471)
T ss_pred             ChHHHHHHHHHHH
Confidence            9977766655543

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.62  E-value=1.5e-05  Score=87.95  Aligned_cols=111  Identities=13%  Similarity=0.106  Sum_probs=79.6

Q ss_pred             cCCceehhhHHH-Hhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC-CCCccccCHHHHHHHhc
Q 046376           22 RNGNTFSTVFHI-VSSGIGIQALF-LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP-VPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        22 ~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~-~~~~~~~sy~~l~~~~~   98 (414)
                      ++-+++++++.- +.+++|+|+.- +++...++|...++++.++.++++..+..-+.+.... .+.. --.|. ..++++
T Consensus        76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~a-GG~Y~-yisral  153 (953)
T TIGR00930        76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKG-GGAYY-LISRSL  153 (953)
T ss_pred             cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-cHHHH-HHHHHh
Confidence            345678888766 88999999987 7788889998778888888888888888877776542 2111 11333 446779


Q ss_pred             CCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHH
Q 046376           99 GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYK  135 (414)
Q Consensus        99 G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~  135 (414)
                      |+.+|..+.+...+.. ..++..|.+..++.+..+++
T Consensus       154 Gp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~lf~  189 (953)
T TIGR00930       154 GPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDLLR  189 (953)
T ss_pred             CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence            9988777777666554 45566688888888777654

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.61  E-value=4.3e-06  Score=87.52  Aligned_cols=106  Identities=14%  Similarity=0.031  Sum_probs=63.9

Q ss_pred             hhhccCCCCCCCCCccccccCCceehhhHHHHhhhhhhhhchhHHHH--HhhChhHHHHHHHHHHHHHHHHHHHHHhccC
Q 046376            3 EVQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGF--ATLGWTWGIICLLTAFAWQIYTIWLLVHLAE   80 (414)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~   80 (414)
                      ++-+++|-++|+..+..-+|+-+.++.+..-+.+++|+|+..+|...  ...|-. ..+..++.++.+........|...
T Consensus         9 ~~~r~k~~~~~~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas   87 (557)
T TIGR00906         9 CLIRRKIVDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGA   87 (557)
T ss_pred             HHhccCCcccccccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444433233333456778999999999999999999999754  346753 344455555555555555666543


Q ss_pred             CCCCc-cccCHHHHHHHhcCCccchhhhhHhHH
Q 046376           81 PVPGT-RYSRYMQVAKAAFGPKLAKSLCVFPVW  112 (414)
Q Consensus        81 ~~~~~-~~~sy~~l~~~~~G~~~~~~~~~~~~~  112 (414)
                      +.|.. ....|.   ++.+|+..+.+..+...+
T Consensus        88 ~~P~sGg~Y~y~---~~~~G~~~gfi~GW~~~l  117 (557)
T TIGR00906        88 RVPKAGSAYLYS---YVTVGELWAFITGWNLIL  117 (557)
T ss_pred             hCCCCCcceeeH---HHHhCcHHHHHHHHHHHH
Confidence            33321 234444   355888777666665544

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.55  E-value=1.3e-05  Score=82.09  Aligned_cols=108  Identities=10%  Similarity=-0.035  Sum_probs=68.6

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFA-TLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      .+|+-+.++..+--+++++|+|++-.|.... ++|- ..++..++.++..+..+.-+.|...+.|.  .-++-+-+++.+
T Consensus        10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~--aGg~y~~~~~~~   86 (456)
T PRK10238         10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV--AGSFSHFAYKYW   86 (456)
T ss_pred             hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHc
Confidence            4566788899999999999999988887655 4553 34455555666666666666676543332  234555677889


Q ss_pred             CCccchhhhhHhHHHhhhhhhHHHHHHHHhhHH
Q 046376           99 GPKLAKSLCVFPVWYLSGGTCIMLIITAGADLE  131 (414)
Q Consensus        99 G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~  131 (414)
                      ||..+..+.+...+.. ...+.+.....++.++
T Consensus        87 g~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~  118 (456)
T PRK10238         87 GSFAGFASGWNYWVLY-VLVAMAELTAVGKYIQ  118 (456)
T ss_pred             CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9977777766654433 3333444444454443

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=98.54  E-value=5.5e-06  Score=83.14  Aligned_cols=328  Identities=16%  Similarity=0.154  Sum_probs=168.8

Q ss_pred             CccccccCCceehhhHHHHhhhhhhhhchhHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHhccCC--CCCccccCHH
Q 046376           16 LPLTASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLG--WTWGIICLLTAFAWQIYTIWLLVHLAEP--VPGTRYSRYM   91 (414)
Q Consensus        16 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~~~g~ill~~~~~~~~~t~~ll~~~~~~--~~~~~~~sy~   91 (414)
                      ....++|+-+.+++++.++..++|+|+...|....+-+  ...++++-+++++++......-.|.-..  ++|.   +|.
T Consensus         6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~a   82 (479)
T KOG1287|consen    6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYA   82 (479)
T ss_pred             ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chh
Confidence            34456677889999999999999999999999866554  2234666677788888877776666432  2332   344


Q ss_pred             HHHHHhcCCccchhhhhHhHHHhhhhhh-HHHHHHHHhh-HHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhc
Q 046376           92 QVAKAAFGPKLAKSLCVFPVWYLSGGTC-IMLIITAGAD-LETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLL  169 (414)
Q Consensus        92 ~l~~~~~G~~~~~~~~~~~~~~~~~g~~-i~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~  169 (414)
                      =+. ++||+.++-...+...+.. ..+. ..+-+..++. ++..++       .|...   +..--.+..+....+.+  
T Consensus        83 yi~-~afg~~~aF~~~wvs~l~~-~p~~~Ai~altF~~Y~l~p~fp-------~c~~p---~~~~~lla~~~l~~lt~--  148 (479)
T KOG1287|consen   83 YIS-EAFGPFPAFLFLWVSLLII-VPTSAAIIALTFATYLLKPFFP-------LCDVP---RVASKLLAAALLVLLTL--  148 (479)
T ss_pred             hHH-HHhccchhHHHHHHHHHHH-hhhHHHHHHHHHHHHhhcccCC-------CCCCc---hHHHHHHHHHHHHHHHH--
Confidence            444 5588866665555554433 3333 4455555555 444332       13211   11122223333334444  


Q ss_pred             cCccchhhHHHHHHHHHH---HHHHHHhhhhhcc------------------------------------cceeehhhhh
Q 046376          170 PNLNSVLKFSKTGTVTAV---VYVTLLWALTIRK------------------------------------GHNLVLEIQG  210 (414)
Q Consensus       170 ~~l~~l~~~s~~~~~~~~---~~~~i~~~~~~~~------------------------------------g~~~~~~i~~  210 (414)
                      .|..+.+|.+.+=.+.+.   +.+.++.+.+...                                    |=+.+-.+.+
T Consensus       149 ~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vte  228 (479)
T KOG1287|consen  149 INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTE  228 (479)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchH
Confidence            477777766655433322   2222222222211                                    1111112233


Q ss_pred             hCCCCCCCCCcccchhHHHHHHHHHHHHHhhhhhhhcc--ccCcccCCccccccc-cccccCCCCcchHHHHHHHHHHHH
Q 046376          211 TLPSSKFNPSSQKMWRAVKISYMTIGMCSFPLALTGYW--AYGNKVTAKEGLLSV-FSQVHGHDTSRGAMGSIYLLQIIN  287 (414)
Q Consensus       211 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~--~fG~~~~~~~~il~~-~~~~~g~~~~~~~~~i~~~~~~i~  287 (414)
                      |+    |||+| +++|++..++.+++++|.++=+..+.  ...|-.++  +.... +.+   +..+.|. -+.-.+..++
T Consensus       229 Ei----knP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S--~aVav~Fa~---~~~G~~~-~~ip~~ValS  297 (479)
T KOG1287|consen  229 EI----KNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSS--DAVAVTFAD---RILGVFA-WAIPFSVALS  297 (479)
T ss_pred             hh----cCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhccc--chHHHHHHH---HhccchH-HHHHHHHHHH
Confidence            44    78875 89999999999999999986655443  33332222  22211 110   0111121 1222233333


Q ss_pred             HhhhhcccccchHHHHHHH---------hhhhccCCCchhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchh
Q 046376          288 CLCQFQIYAMPAFDSLEFR---------YIFKKQQQCPRRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKF  357 (414)
Q Consensus       288 ~~~sypl~~~p~~~~le~~---------~~~~~~~~~~~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~f  357 (414)
                      .+.+.--.++.....+...         +..+.+++.+  .+.  ...+-....++..++.++..+.+.++=... ...+
T Consensus       298 ~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~T--P~~--allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l  373 (479)
T KOG1287|consen  298 LIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFT--PRP--ALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGL  373 (479)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCC--ChH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3333322222221111111         1111111111  111  112223344444556678888888876666 7777


Q ss_pred             hhhhhhhhhhcCCCCCcc
Q 046376          358 SYPCLMYNLIKKPDQSGT  375 (414)
Q Consensus       358 ilP~l~~l~~~k~~~~~~  375 (414)
                      .+=+++++|.++++..++
T Consensus       374 ~~~gll~lR~k~p~~~rP  391 (479)
T KOG1287|consen  374 SMAGLLWLRWKHPPLPRP  391 (479)
T ss_pred             HHHHHHHHHhhCCCCCCC
Confidence            777899998877664443

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.51  E-value=5.6e-06  Score=81.93  Aligned_cols=85  Identities=19%  Similarity=0.268  Sum_probs=61.0

Q ss_pred             CceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccc
Q 046376           24 GNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLA  103 (414)
Q Consensus        24 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~  103 (414)
                      -|.+|.++.++.+++|+|++.+|...++.+---+-+..++.+...........+..++.|+   .+.-|..++.+||..|
T Consensus         3 is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~---~~~~~~~~~~~Gk~~g   79 (359)
T TIGR00912         3 ISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE---KNFSEILSKYLGKILG   79 (359)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhhHHHH
Confidence            3567889999999999999999998765322223345555666666667777777655443   3688999999999877


Q ss_pred             hhhhhHhH
Q 046376          104 KSLCVFPV  111 (414)
Q Consensus       104 ~~~~~~~~  111 (414)
                      +.+.....
T Consensus        80 ~~~~~~~~   87 (359)
T TIGR00912        80 RLLSILFI   87 (359)
T ss_pred             HHHHHHHH
Confidence            77665433

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR00908 2A0305 ethanolamine permease

Probab=98.48  E-value=1.6e-05  Score=80.93  Aligned_cols=110  Identities=18%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             ccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376           21 SRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        21 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~  100 (414)
                      +|+-+.++...--+..++|....+.+.+++..|+..-++..++.++.....+....|...+.|..  -..-.-+++.+|+
T Consensus         6 ~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~--Gg~y~~~~~~~G~   83 (442)
T TIGR00908         6 KKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA--GGGYGFARRAFGP   83 (442)
T ss_pred             hccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHhCc
Confidence            45567777777777778885555678889999986433444444444444444556654333321  2334466788999


Q ss_pred             ccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHH
Q 046376          101 KLAKSLCVFPVWYLSGGTCIMLIITAGADLETL  133 (414)
Q Consensus       101 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~  133 (414)
                      ..+....+...+.. .....++....++.++.+
T Consensus        84 ~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~~  115 (442)
T TIGR00908        84 WGGFLAGTAILIEF-AFAPPAIACFIGAYCESL  115 (442)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            77776666544332 333444555566665544

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10836 lysine transporter; Provisional

Probab=98.44  E-value=7e-05  Score=77.37  Aligned_cols=91  Identities=10%  Similarity=-0.002  Sum_probs=64.7

Q ss_pred             cccccCCceehhhHHHHhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHH
Q 046376           18 LTASRNGNTFSTVFHIVSSGIGIQALFLPV-GFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKA   96 (414)
Q Consensus        18 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~   96 (414)
                      ++-+|+-+.++.+...+.+++|+|++.+|. +.+++|-...++..++.+++....+.-..|...+.|.  .-..-.-+++
T Consensus        11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~--sGg~y~y~~~   88 (489)
T PRK10836         11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV--SGSFATYGQN   88 (489)
T ss_pred             ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHH
Confidence            345566788999999999999999999996 6667786445667777777777777777777644432  2344555667


Q ss_pred             hcCCccchhhhhHh
Q 046376           97 AFGPKLAKSLCVFP  110 (414)
Q Consensus        97 ~~G~~~~~~~~~~~  110 (414)
                      .+|+.++....+..
T Consensus        89 ~~g~~~gf~~Gw~~  102 (489)
T PRK10836         89 YVEEGFGFALGWNY  102 (489)
T ss_pred             HcChHHHHHHHHHH
Confidence            78887776665543

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.42  E-value=6.5e-05  Score=76.62  Aligned_cols=88  Identities=14%  Similarity=0.041  Sum_probs=54.3

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHHH-HhhChh-HHHHHHHHHHHHHHHHHHHHHhccCCC--CCccccCHHHHHH
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGF-ATLGWT-WGIICLLTAFAWQIYTIWLLVHLAEPV--PGTRYSRYMQVAK   95 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~-~g~ill~~~~~~~~~t~~ll~~~~~~~--~~~~~~sy~~l~~   95 (414)
                      -+|+-+.+++..-.+..++|+|++..|... ...|-. ..++..++.+++.........|.....  .| ....|   .+
T Consensus         6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G-G~y~y---~~   81 (445)
T PRK11357          6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG-ADYVY---LK   81 (445)
T ss_pred             ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Cceee---HH
Confidence            456678888998888899999999999874 445532 233334444455555555555554322  23 23445   44


Q ss_pred             HhcCCccchhhhhHhH
Q 046376           96 AAFGPKLAKSLCVFPV  111 (414)
Q Consensus        96 ~~~G~~~~~~~~~~~~  111 (414)
                      +.+||..+....+...
T Consensus        82 ~~~g~~~gf~~gw~~~   97 (445)
T PRK11357         82 NAGSRPLAFLSGWASF   97 (445)
T ss_pred             HhcCChhHHHHHHHHH
Confidence            7799877766665533

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.41  E-value=0.00011  Score=75.57  Aligned_cols=90  Identities=13%  Similarity=-0.033  Sum_probs=61.6

Q ss_pred             cCCceehhhHHHHhhhhhhhhchhH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376           22 RNGNTFSTVFHIVSSGIGIQALFLP-VGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~  100 (414)
                      |+-+.++...-.+.+++|+|++..| .+.+.+|-...++..++.+++......-+.|.....|. ..-.|.+-+++.+|+
T Consensus         2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~-~gG~~~~~~~~~~g~   80 (478)
T TIGR00913         2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV-VSGSFATYASRFVDP   80 (478)
T ss_pred             CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHcCc
Confidence            4567788888899999999999855 55667774433445555666666666666776544432 123677888999999


Q ss_pred             ccchhhhhHhHH
Q 046376          101 KLAKSLCVFPVW  112 (414)
Q Consensus       101 ~~~~~~~~~~~~  112 (414)
                      .++....+...+
T Consensus        81 ~~gf~~gw~~~~   92 (478)
T TIGR00913        81 AFGFAVGWNYWL   92 (478)
T ss_pred             HHHHHHHHHHHH
Confidence            878776665443

>PRK10746 putative transport protein YifK; Provisional

Probab=98.35  E-value=0.00018  Score=73.79  Aligned_cols=89  Identities=9%  Similarity=0.005  Sum_probs=62.4

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVG-FATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      .+|+-+.++..+--+.+++|+|++-.|.. .+.+|- ..++..++.+++.+..+.-+.|.....|.  .-++.+-+++.+
T Consensus         8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~--sGg~~~y~~~~~   84 (461)
T PRK10746          8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV--TGSFAVYAHRYM   84 (461)
T ss_pred             HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHh
Confidence            34556788888999999999999996655 556675 34455555666666666667777544432  346777899999


Q ss_pred             CCccchhhhhHhH
Q 046376           99 GPKLAKSLCVFPV  111 (414)
Q Consensus        99 G~~~~~~~~~~~~  111 (414)
                      |+.+|..+.+...
T Consensus        85 g~~~Gf~~gw~~~   97 (461)
T PRK10746         85 SPFFGYLTAWSYW   97 (461)
T ss_pred             CcHHHHHHHHHHH
Confidence            9988876666443

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.33  E-value=0.00021  Score=73.17  Aligned_cols=90  Identities=14%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVG-FATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      .+|+-+.++..+..+.+++|+|++.+|.. .+.+|- ...+..++.++.......-+.|...+.|.  .-..-+-+++.+
T Consensus         7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~--~Gg~y~y~~~~~   83 (457)
T PRK10580          7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPA--ASSFSRYAQENL   83 (457)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHc
Confidence            34556788899999999999999998876 556675 35666666666767777777777644432  123444678889


Q ss_pred             CCccchhhhhHhHH
Q 046376           99 GPKLAKSLCVFPVW  112 (414)
Q Consensus        99 G~~~~~~~~~~~~~  112 (414)
                      ||..+..+.+...+
T Consensus        84 G~~~gf~~gw~~~~   97 (457)
T PRK10580         84 GPLAGYITGWTYCF   97 (457)
T ss_pred             CcHHHHHHHHHHHH
Confidence            99777777665443

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.32  E-value=5.1e-05  Score=76.72  Aligned_cols=102  Identities=18%  Similarity=0.111  Sum_probs=60.4

Q ss_pred             ceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhccCCCCCccccCHHHHHHHhcCCccc
Q 046376           25 NTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQ-IYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLA  103 (414)
Q Consensus        25 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~-~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~  103 (414)
                      +++++....++.++|+|+...| .....|.. ..+..++.+.+. ........|...+.|  ++-..-+-+++.+||+++
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p--~~GG~y~~~~~~~g~~~g   77 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYP--SAGGIYVWVSRAFGPFWG   77 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTT--SSTTHHHHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCC--CcCeeeehhhhcccccch
Confidence            4577888889999999999999 77777765 444444333333 344445555544322  223445677888999877


Q ss_pred             hhhhhHhHHHhhhhhhHHHHHHHHhhHH
Q 046376          104 KSLCVFPVWYLSGGTCIMLIITAGADLE  131 (414)
Q Consensus       104 ~~~~~~~~~~~~~g~~i~y~i~~~~~l~  131 (414)
                      ....+...+.. ...+.++.....+.+.
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~  104 (426)
T PF13520_consen   78 FIVGWLYWVAY-ILSLASVASSFASYLL  104 (426)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred             hcccceeEEEe-eccccccccchhhhhh
Confidence            76666554432 3333344444454443

...

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.22  E-value=0.00013  Score=75.69  Aligned_cols=88  Identities=22%  Similarity=0.227  Sum_probs=53.9

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHH-HHhhChhHHH--HHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHH
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVG-FATLGWTWGI--ICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKA   96 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~--ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~   96 (414)
                      .+|+-+.++.+.-.+++++|+|++..|.. .+++|-. |.  +..++.+++.........|.....|..  -..-.-.++
T Consensus        40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~aELas~~P~s--GG~y~~~~~  116 (501)
T TIGR00911        40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVYAELGTTIPKS--GGEYNYILE  116 (501)
T ss_pred             cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CchhhhHHh
Confidence            34556788888888889999999998876 4556643 32  333445555555556666665433321  122233456


Q ss_pred             hcCCccchhhhhHh
Q 046376           97 AFGPKLAKSLCVFP  110 (414)
Q Consensus        97 ~~G~~~~~~~~~~~  110 (414)
                      .+||..+....+..
T Consensus       117 ~~g~~~gf~~gw~~  130 (501)
T TIGR00911       117 VFGPLLAFLRLWIE  130 (501)
T ss_pred             HhCCHHHHHHHHHH
Confidence            79987676555543

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.16  E-value=0.0004  Score=70.90  Aligned_cols=75  Identities=16%  Similarity=0.136  Sum_probs=54.2

Q ss_pred             HhhhhhhhhchhHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhHhH
Q 046376           34 VSSGIGIQALFLPV-GFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFPV  111 (414)
Q Consensus        34 ~~~~iG~GiL~LP~-af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~~  111 (414)
                      +.+++|+|++-.|. +.++.|. ..++..++.+++....+....|.....|.  .-..-+-+++.+||.++....+...
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~--~Gg~y~y~~~~~G~~~gf~~gw~~~   79 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD--TGSFSTYADKAIGRWAGYTIGWLYW   79 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHcChHHHHHHHHHHH
Confidence            46799999999888 7888896 36777777777777777777777644332  2355667779999977776665544

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=98.13  E-value=1.4e-05  Score=70.56  Aligned_cols=152  Identities=16%  Similarity=0.233  Sum_probs=93.6

Q ss_pred             hHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcc----------------CCC-----------
Q 046376           30 VFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLA----------------EPV-----------   82 (414)
Q Consensus        30 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~----------------~~~-----------   82 (414)
                      ..-+.|-++|+|.|+||.+|+.+||++++.++.+.+++++.+....++..                +.+           
T Consensus        18 llymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~d   97 (319)
T KOG3832|consen   18 LLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDDD   97 (319)
T ss_pred             HhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCCc
Confidence            34566779999999999999999999999999999999998877766531                000           


Q ss_pred             -------------C-------C-------ccccCHHHHHHHhcCCccchhh-hhHhHHHhhhhhhHHHHHHHHhhHHHHH
Q 046376           83 -------------P-------G-------TRYSRYMQVAKAAFGPKLAKSL-CVFPVWYLSGGTCIMLIITAGADLETLY  134 (414)
Q Consensus        83 -------------~-------~-------~~~~sy~~l~~~~~G~~~~~~~-~~~~~~~~~~g~~i~y~i~~~~~l~~~~  134 (414)
                                   |       |       .+....++++...|.| .+.-. -..+++++ ||....|--...-+..++.
T Consensus        98 vli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiyl-fgdlaiyaaavpfs~m~it  175 (319)
T KOG3832|consen   98 VLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYL-FGDLAIYAAAVPFSAMNIT  175 (319)
T ss_pred             EEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHH-hhhhhhhhhcCchHhhhhh
Confidence                         0       0       0112356777777776 44433 33334444 8888888665555544443


Q ss_pred             HHH-----hC-CC-------cccccCCCC----cchhhHhHHHH-HHHHhhhccCccchhhHHHHHHHH
Q 046376          135 KIM-----CG-GI-------ATCEAKSLP----GVVWCLLFICI-AIVVSQLLPNLNSVLKFSKTGTVT  185 (414)
Q Consensus       135 ~~~-----~~-~~-------~~~~~~~~~----~~~~~~i~~~~-~lpLs~l~~~l~~l~~~s~~~~~~  185 (414)
                      -..     |+ ..       +.|+++.++    .+.|++++.++ ++|+.+.  ++.+-+++..+...+
T Consensus       176 caa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~--diqktk~iqiltslm  242 (319)
T KOG3832|consen  176 CAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA--DIQKTKHIQILTSLM  242 (319)
T ss_pred             hhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe--ccccchhHHHHHHHH
Confidence            221     11 11       234332222    24566666544 3466555  777777777665543

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=97.92  E-value=0.0007  Score=67.37  Aligned_cols=139  Identities=13%  Similarity=0.087  Sum_probs=88.2

Q ss_pred             cCCceehhhHHHHhhhhhhhhc-hhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376           22 RNGNTFSTVFHIVSSGIGIQAL-FLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~  100 (414)
                      |.-+.++--+.=+.+.||+|.. +--.+.+.+|-- -++.-.+.+++.+.=++.|.|...++|  ...|+.+.+++.+|+
T Consensus        13 rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p--~~gSF~~~a~~~lG~   89 (462)
T COG1113          13 RGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANP--VSGSFSDYARKYLGP   89 (462)
T ss_pred             hhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCcHHHHHHHHhcc
Confidence            3345666667778889999974 477788888832 244455666777777888888765433  346999999999999


Q ss_pred             ccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHH--HHhhhccCccchhh
Q 046376          101 KLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAI--VVSQLLPNLNSVLK  177 (414)
Q Consensus       101 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l--pLs~l~~~l~~l~~  177 (414)
                      +.|...++.-...- .-++++-+...+..++.+++.            .+.|.+.++..++..  -|.-. |.+.++.+
T Consensus        90 ~Agf~tgW~YW~~w-v~v~~ae~tAi~~y~~~WfP~------------vP~Wv~al~~~~l~~~~NL~sV-k~FGE~Ef  154 (462)
T COG1113          90 WAGFLTGWTYWFFW-VLVGIAELTAIGIYLQFWFPD------------VPQWVFALAAVVLLLAVNLISV-KVFGELEF  154 (462)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            87776666544332 455667777777777665431            134455444333322  23445 66666654

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.91  E-value=0.0036  Score=63.85  Aligned_cols=110  Identities=21%  Similarity=0.138  Sum_probs=59.2

Q ss_pred             ccccCCceeh-hhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHh
Q 046376           19 TASRNGNTFS-TVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAA   97 (414)
Q Consensus        19 ~~~~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~   97 (414)
                      .++|+-+.++ ...-....++|.|++.+|......+ ....+..++.+++.........|.....|.  .-.+-+-+++.
T Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~--~GG~y~~~~~~   85 (466)
T COG0531           9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS--AGGAYAYAKRA   85 (466)
T ss_pred             hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeeeehhhh
Confidence            3444455566 6777788899999999999988775 111221233333333333444444332221  22345567788


Q ss_pred             cCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHH
Q 046376           98 FGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLET  132 (414)
Q Consensus        98 ~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~  132 (414)
                      +|++.+....+...+.. .....+..+..++.+..
T Consensus        86 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  119 (466)
T COG0531          86 LGPRLGFLAGWLYLLAY-VIALAAIAIGAASYLSY  119 (466)
T ss_pred             cCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            99877755555444332 33334444444444433

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=97.89  E-value=0.0054  Score=62.46  Aligned_cols=150  Identities=15%  Similarity=0.177  Sum_probs=95.3

Q ss_pred             cCCceehhhHHHHhhhhhhhhc-hhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376           22 RNGNTFSTVFHIVSSGIGIQAL-FLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~  100 (414)
                      |+-..++-.+.=+.+.+|+|.+ +.-.+.+++|-...++-..+.+.+.+..+.-|.|.+...|  ..-+|.+-+.+.-++
T Consensus        44 R~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P--~sGsF~~ya~rfvdp  121 (541)
T COG0833          44 RSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP--VSGSFSTYATRFVDP  121 (541)
T ss_pred             hhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCchhhhhhhhcCc
Confidence            4445566677778899999986 5899999999887788888888888888888999875544  234688888888888


Q ss_pred             ccchhhhhHhHHHhhhhhhHHH-HHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhh-ccCccchh-h
Q 046376          101 KLAKSLCVFPVWYLSGGTCIML-IITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQL-LPNLNSVL-K  177 (414)
Q Consensus       101 ~~~~~~~~~~~~~~~~g~~i~y-~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l-~~~l~~l~-~  177 (414)
                      .+|..+.+. +... +...++- +..++..++.+.    ++       ..+.+.|++++.++++.+..+ +|.+.+.. |
T Consensus       122 a~GFa~gWn-Yw~~-w~v~~~~El~aa~~vi~yW~----p~-------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw  188 (541)
T COG0833         122 AFGFALGWN-YWLN-WAVTLPLELTAASLVIQYWF----PD-------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFW  188 (541)
T ss_pred             hHHHHHHHH-HHHH-HHHHhhHHHHHHHHhhhhhc----CC-------CCChHHHHHHHHHHHHHHHHhcccccceehHH
Confidence            666555443 2222 4444443 333333333221    11       124568888877776665443 15565554 3


Q ss_pred             HHHHHHHHH
Q 046376          178 FSKTGTVTA  186 (414)
Q Consensus       178 ~s~~~~~~~  186 (414)
                      +|.+=+++.
T Consensus       189 ~s~iKV~~i  197 (541)
T COG0833         189 FSSIKVLTI  197 (541)
T ss_pred             HHHHHHHHH
Confidence            444444333

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.75  E-value=0.023  Score=58.61  Aligned_cols=83  Identities=14%  Similarity=-0.046  Sum_probs=45.3

Q ss_pred             ccCCceehhhHHHHhhhhh--hhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHh
Q 046376           21 SRNGNTFSTVFHIVSSGIG--IQALF-LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAA   97 (414)
Q Consensus        21 ~~~~s~~~a~~~l~~~~iG--~GiL~-LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~   97 (414)
                      +|+-+.++.+. +.-+++|  +|+.. .+.+..+.|-..-+...++.+++....+.-+.|...+.|.  .-..-.-++++
T Consensus        11 ~r~l~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~--~Gg~y~~~~~~   87 (482)
T TIGR00907        11 KREFSLWSIFG-FAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT--SGGQYFWSAKL   87 (482)
T ss_pred             ecccchhHHHH-HHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC--CccHHHHHHHh
Confidence            34456565543 3333454  55543 5556777776544555666666666666667777544332  12334445666


Q ss_pred             cCCccchhh
Q 046376           98 FGPKLAKSL  106 (414)
Q Consensus        98 ~G~~~~~~~  106 (414)
                      +|++.++..
T Consensus        88 ~g~~~g~~~   96 (482)
T TIGR00907        88 APPRQMPFA   96 (482)
T ss_pred             cccccccce
Confidence            776554443

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.74  E-value=0.0011  Score=64.60  Aligned_cols=81  Identities=23%  Similarity=0.324  Sum_probs=54.9

Q ss_pred             ceehhhHHHHhhhhhhhhchhHHHHHhh---ChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCc
Q 046376           25 NTFSTVFHIVSSGIGIQALFLPVGFATL---GWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPK  101 (414)
Q Consensus        25 s~~~a~~~l~~~~iG~GiL~LP~af~~~---G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~  101 (414)
                      |..|...-+..+++|+|++.+|....+.   ||+. .++-.+.+...   ..+..+..++.|+   .+..|..++.+||.
T Consensus         3 S~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~-~ll~~~~~l~~---~~l~~~l~~~~p~---~~l~~~~~~~~Gk~   75 (320)
T PF03845_consen    3 SPRQLFFLLISSIIGTGILFLPAILAEQAGDAWIS-VLLGGLIGLLL---ALLIYYLLKRFPG---KTLVEISEKLFGKW   75 (320)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHH---HHHHHHHHHHCCC---CCHHHHHHHHhCcH
Confidence            4567888999999999999999997666   5763 33333333333   3334444433223   48899999999998


Q ss_pred             cchhhhhHhHH
Q 046376          102 LAKSLCVFPVW  112 (414)
Q Consensus       102 ~~~~~~~~~~~  112 (414)
                      .|+.+.....+
T Consensus        76 lg~ii~~~~~l   86 (320)
T PF03845_consen   76 LGKIINLLYIL   86 (320)
T ss_pred             HHHHHHHHHHH
Confidence            88877654433

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK11375 allantoin permease; Provisional

Probab=97.35  E-value=0.026  Score=58.16  Aligned_cols=95  Identities=13%  Similarity=0.004  Sum_probs=48.8

Q ss_pred             ccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccc----cCCCCc--chhhHhHHH
Q 046376           87 YSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCE----AKSLPG--VVWCLLFIC  160 (414)
Q Consensus        87 ~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~----~~~~~~--~~~~~i~~~  160 (414)
                      ..++.-++|..||.+..++...+......+|=--.-..+.++.++.+.+...+.-..-.    ....+.  ....+++.+
T Consensus        88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~  167 (484)
T PRK11375         88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL  167 (484)
T ss_pred             CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence            46899999999999765655544322122333333455677777776655432100000    001111  122234455


Q ss_pred             HHHHHhhhccCccchhhHHHHHH
Q 046376          161 IAIVVSQLLPNLNSVLKFSKTGT  183 (414)
Q Consensus       161 ~~lpLs~l~~~l~~l~~~s~~~~  183 (414)
                      +..++.+.  ..|.+++++..+.
T Consensus       168 l~~~~~~~--g~~~i~~l~~i~~  188 (484)
T PRK11375        168 VNVGIGFG--GGKVLNKFTAILN  188 (484)
T ss_pred             HHHHHHHc--CHHHHHHHHHHHH
Confidence            55666543  6666666655554

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.24  E-value=0.15  Score=52.40  Aligned_cols=31  Identities=16%  Similarity=-0.034  Sum_probs=24.6

Q ss_pred             CCCCCCcccchhHHHHHHHHHHHHHhhhhhhh
Q 046376          215 SKFNPSSQKMWRAVKISYMTIGMCSFPLALTG  246 (414)
Q Consensus       215 ~~~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~g  246 (414)
                      |.|||+| +++|++..+..++.++|....+.-
T Consensus       219 E~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~  249 (474)
T TIGR03813       219 DVDNPDK-NYPIAILIAALGTVLIFVLGTLAI  249 (474)
T ss_pred             hccCccc-chhHHHHHHHHHHHHHHHHHHHHH
Confidence            3478875 789999999999999998755443

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.18  E-value=0.22  Score=51.50  Aligned_cols=84  Identities=13%  Similarity=0.169  Sum_probs=49.2

Q ss_pred             ccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376           21 SRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIY-TIWLLVHLAEPVPGTRYSRYMQVAKAAFG   99 (414)
Q Consensus        21 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~-t~~ll~~~~~~~~~~~~~sy~~l~~~~~G   99 (414)
                      +|+-++++.+...+++++|.+  .+|.++++.|.. +++...+.+++... ......|.....|+. .-.--.=.++++|
T Consensus         6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~-aGG~Y~w~~~~~G   81 (496)
T PRK15238          6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDE-KGGIYSWMNKSVG   81 (496)
T ss_pred             cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcHHHHHHHHcC
Confidence            455677888877888899875  579889998864 44444444433322 333455554333210 0122234567799


Q ss_pred             Cccchhhhh
Q 046376          100 PKLAKSLCV  108 (414)
Q Consensus       100 ~~~~~~~~~  108 (414)
                      ++++....+
T Consensus        82 ~~~gf~~~w   90 (496)
T PRK15238         82 PKFAFIGTF   90 (496)
T ss_pred             chHHHHHHH
Confidence            988875443

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=97.05  E-value=0.22  Score=49.90  Aligned_cols=87  Identities=13%  Similarity=0.059  Sum_probs=51.6

Q ss_pred             ccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHh
Q 046376           87 YSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVS  166 (414)
Q Consensus        87 ~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs  166 (414)
                      ..++.-++|..||++..++...... ..+.|=-..-....++.++.+.+...+.        .+...+.++++++..+.+
T Consensus        57 Gl~~~v~sR~~FG~~Gs~~~~~l~~-i~~igW~~v~~~~gg~~l~~~~~~~~~~--------~~~~~~~~i~~~l~~~~~  127 (386)
T TIGR02358        57 GLSAMGSLKLSLGSKGSVLPSLLNL-LQLVGWTAVMIIVGAKAASLLGGRLFGE--------ESPMLWILIVGILVTLWL  127 (386)
T ss_pred             CcCHHHHHHHHHccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHHHHH
Confidence            4678999999999976555544433 2334444455667788888877543221        112344555566556655


Q ss_pred             hhccCccchhhHHHHHHH
Q 046376          167 QLLPNLNSVLKFSKTGTV  184 (414)
Q Consensus       167 ~l~~~l~~l~~~s~~~~~  184 (414)
                      ..  ..|.++++..++..
T Consensus       128 ~~--G~~~i~~~~~~~~~  143 (386)
T TIGR02358       128 LS--GPLAFVWLNNWSVW  143 (386)
T ss_pred             HH--HHHHHHHHHHHHHH
Confidence            54  55666666655543

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=97.05  E-value=0.08  Score=53.99  Aligned_cols=52  Identities=10%  Similarity=0.048  Sum_probs=36.3

Q ss_pred             ccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhC
Q 046376           87 YSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCG  139 (414)
Q Consensus        87 ~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~  139 (414)
                      ..++.-+.|..||.+..++...+.. ..+.|=...-....++.++.+.+...+
T Consensus        75 Gl~~~v~sR~~FG~~Gs~~~~~~~~-i~~igW~av~~~~~g~al~~~l~~i~~  126 (442)
T TIGR00800        75 GLPFPVLSRASFGIYGSLLPSLLRI-VMAIGWYGVQAWVGGLCVALMLDSIFP  126 (442)
T ss_pred             CCCcchhhhhhhhhhHhHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence            3578899999999976665554443 344666666778888888887766543

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=97.01  E-value=0.39  Score=49.57  Aligned_cols=144  Identities=13%  Similarity=0.091  Sum_probs=70.0

Q ss_pred             ccCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHH--HHHHHHHH-HHHHHHHhccCCCCCccccCHHHHHHH
Q 046376           21 SRNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICL--LTAFAWQI-YTIWLLVHLAEPVPGTRYSRYMQVAKA   96 (414)
Q Consensus        21 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill--~~~~~~~~-~t~~ll~~~~~~~~~~~~~sy~~l~~~   96 (414)
                      .|+-+++-..+.+..+.+| ...++.|....+-|+.......  .....+.. +-+..+.+..++   .+..|..|.-++
T Consensus        40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~l~~  116 (483)
T PRK09442         40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK---YNAVTLNDMLRA  116 (483)
T ss_pred             CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHHH
Confidence            3445566667777666655 4667788777777764211111  11111111 122222222222   235799999999


Q ss_pred             hcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchh
Q 046376           97 AFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVL  176 (414)
Q Consensus        97 ~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~  176 (414)
                      -||++..+....+..+...++...+-+...+..++.+..             .+.+.-+++.+++++..+.+ ..++...
T Consensus       117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-------------i~~~~~iii~~~iv~iYt~~-GGl~av~  182 (483)
T PRK09442        117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-------------ISYETGLLIFGITVALYTAF-GGFRAVV  182 (483)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------CCHHHHHHHHHHHHHHHHHh-ccHHHHH
Confidence            999765555543333322233333334444555544321             11122333444444555556 6666666


Q ss_pred             hHHHH
Q 046376          177 KFSKT  181 (414)
Q Consensus       177 ~~s~~  181 (414)
                      |+..+
T Consensus       183 ~TD~i  187 (483)
T PRK09442        183 LTDAL  187 (483)
T ss_pred             HHHHH
Confidence            65543

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=96.97  E-value=0.066  Score=51.33  Aligned_cols=128  Identities=18%  Similarity=0.331  Sum_probs=84.5

Q ss_pred             hHHHHhhhhhhhhch---hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhh
Q 046376           30 VFHIVSSGIGIQALF---LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSL  106 (414)
Q Consensus        30 ~~~l~~~~iG~GiL~---LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~  106 (414)
                      .|-.+.+++|+|-=+   +=-=|..-||- |..-.++++.+-..++.++.+...+   -+..+|+|.-++.+||+++|+.
T Consensus         9 ~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~---f~a~~y~~~~~~v~~~~~~ki~   84 (349)
T COG3949           9 AFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKK---FNATSYREILKYVSGPKFAKII   84 (349)
T ss_pred             HHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHH---hcccchHHHHHHHhhHHHHHHH
Confidence            455666888988655   22224445654 5556666667777777777776543   2356899999999999999999


Q ss_pred             hhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchh
Q 046376          107 CVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVL  176 (414)
Q Consensus       107 ~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~  176 (414)
                      +....+.+ ++.++.-+-.+|+.+++.+.             .+.|.-.++..+....+-++ ++.+.+-
T Consensus        85 d~~iif~l-f~~~vVM~AGags~~~e~~~-------------lP~wiGali~i~~v~i~lfl-~~vegi~  139 (349)
T COG3949          85 DIIIIFFL-FSTAVVMLAGAGSLLEEMFG-------------LPYWIGALIIILLVLILLFL-GRVEGII  139 (349)
T ss_pred             HHHHHHHH-HHHHHHHhccchhHHHHHhC-------------ccHHHHHHHHHHHHHHHHHH-hccccee
Confidence            98888776 88888888777776666432             22233224444444555566 7676654

>TIGR02119 panF sodium/pantothenate symporter

Probab=96.95  E-value=0.29  Score=50.29  Aligned_cols=146  Identities=12%  Similarity=0.084  Sum_probs=74.0

Q ss_pred             cccCCceehhhHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHH--HHHHHHH-HHHHHHHhccCCCCCccccCHHHHHH
Q 046376           20 ASRNGNTFSTVFHIVSSGIGI-QALFLPVGFATLGWTWGIICLL--TAFAWQI-YTIWLLVHLAEPVPGTRYSRYMQVAK   95 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~ill~--~~~~~~~-~t~~ll~~~~~~~~~~~~~sy~~l~~   95 (414)
                      ..|+-+++...+.+..+.+|+ ..++.|-...+.|+.+......  ..+.+.. .-.....+..++   .+..|.+|.-+
T Consensus        38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l~  114 (471)
T TIGR02119        38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK---YNAITINDVLK  114 (471)
T ss_pred             eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHH
Confidence            345566777778888888874 4567888888888642111111  0111110 111112222221   23579999999


Q ss_pred             HhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccch
Q 046376           96 AAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSV  175 (414)
Q Consensus        96 ~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l  175 (414)
                      +-||++..++...+.....+++...+-+...+..++.+..             .+.+.-+++.+++++..+.. .-++..
T Consensus       115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-------------i~~~~~iii~~~iv~iYt~~-GG~~av  180 (471)
T TIGR02119       115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-------------LSYLTALFIFSSSVLIYTTF-GGFRAV  180 (471)
T ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHHh-hhHHHH
Confidence            9999766555543333323344444444445554444431             11222333444444445555 566666


Q ss_pred             hhHHHHH
Q 046376          176 LKFSKTG  182 (414)
Q Consensus       176 ~~~s~~~  182 (414)
                      .|+..+=
T Consensus       181 ~~td~iQ  187 (471)
T TIGR02119       181 ALTDAIQ  187 (471)
T ss_pred             HHHHHHH
Confidence            6655443

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.90  E-value=0.65  Score=47.77  Aligned_cols=90  Identities=14%  Similarity=-0.037  Sum_probs=51.4

Q ss_pred             ccCCceehhhHHHHhh-hhhhhhchhHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376           21 SRNGNTFSTVFHIVSS-GIGIQALFLPVG-FATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        21 ~~~~s~~~a~~~l~~~-~iG~GiL~LP~a-f~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      +|+-+.++.+.--++. .+|+|+.++|.. ...+|- ..+...++.++.......-+.|...+.|..  -..-.-+++.+
T Consensus        12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~a--GG~Y~~~~~~~   88 (475)
T TIGR03428        12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPIS--GAIYQWSRRMG   88 (475)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCHHHHHHHHc
Confidence            3446667665444443 378888886544 556665 334445555555555555666665443321  12233456778


Q ss_pred             CCccchhhhhHhHHH
Q 046376           99 GPKLAKSLCVFPVWY  113 (414)
Q Consensus        99 G~~~~~~~~~~~~~~  113 (414)
                      ||..+....+...+.
T Consensus        89 g~~~gf~~gW~~~~~  103 (475)
T TIGR03428        89 GEVIGWFAGWFMIIA  103 (475)
T ss_pred             CccccHHHHHHHHHH
Confidence            998887777665543

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=96.79  E-value=0.39  Score=49.94  Aligned_cols=28  Identities=11%  Similarity=-0.135  Sum_probs=22.0

Q ss_pred             CCCCCCcccchhHHHHHHHHHHHHHhhhh
Q 046376          215 SKFNPSSQKMWRAVKISYMTIGMCSFPLA  243 (414)
Q Consensus       215 ~~~~p~~~~~~~~~~~~~~~~~~~Y~~~g  243 (414)
                      |.|||+| +++|++..+..++.++|....
T Consensus       219 E~knP~r-~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       219 ELENPGR-DYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HccCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence            4588875 789999999888888887533

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.73  E-value=0.045  Score=57.09  Aligned_cols=103  Identities=16%  Similarity=0.057  Sum_probs=61.5

Q ss_pred             hccCCCCCCCCCcc-ccccCCceehhhHHHHhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 046376            5 QKLQPNSLDDWLPL-TASRNGNTFSTVFHIVSSGIGIQALF-LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPV   82 (414)
Q Consensus         5 ~~~~~~~~~~~~~~-~~~~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~   82 (414)
                      ++++.+..|+..+. .-+|+.+.++-.+.=+.+.+|+|++= ...+.++.|=..-++-.++.+...+.++.-+.|...+.
T Consensus        12 ~~~~~~~~~~~~~~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~   91 (554)
T KOG1286|consen   12 TRREVDSFDSAEGETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRF   91 (554)
T ss_pred             cccccccccccCccchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheec
Confidence            34444443433333 33466677877777788999999976 67778888866555556666666666777777765544


Q ss_pred             CCccccCHHHHHHHhcCCccchhhhh
Q 046376           83 PGTRYSRYMQVAKAAFGPKLAKSLCV  108 (414)
Q Consensus        83 ~~~~~~sy~~l~~~~~G~~~~~~~~~  108 (414)
                      |.. .-++-.-+++..|+.++-.+.+
T Consensus        92 P~~-aGs~~~ya~~~i~e~~aF~~gW  116 (554)
T KOG1286|consen   92 PVS-AGSFYTYAYRFVGESLAFAIGW  116 (554)
T ss_pred             ccc-cccceeeeeeeeCcHHHHHHHH
Confidence            421 1233344455566654444443

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=96.20  E-value=0.94  Score=45.80  Aligned_cols=81  Identities=17%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             HHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhc-
Q 046376           91 MQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLL-  169 (414)
Q Consensus        91 ~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~-  169 (414)
                      ..++|..||.+.+ ++..+.....+.|-.....+..++.   ...   .       ...+.+.++++.++++...+.+. 
T Consensus        84 mi~sR~~fG~~Gs-~l~sll~~~~~iGW~~v~~~l~~~a---~~~---~-------~~~~~~~~ili~g~l~~l~~ifG~  149 (442)
T COG1457          84 MILSRYPFGVKGS-ILPSLLNGITLIGWFGVNVILSGIA---IGS---G-------TGLPVWAGILIIGVLMTLVTIFGY  149 (442)
T ss_pred             heeecccccchhH-HHHHHHHHHHHhhHHHHHHHHhccc---ccc---C-------CCCcHHHHHHHHHHHHHHHHHHhH
Confidence            4578899999645 4433333334466555556655554   110   0       11234566777777666655441 


Q ss_pred             cCccchhhHHHHHHHH
Q 046376          170 PNLNSVLKFSKTGTVT  185 (414)
Q Consensus       170 ~~l~~l~~~s~~~~~~  185 (414)
                      |-++.+..++..-.+.
T Consensus       150 r~l~~l~~~a~~~~~~  165 (442)
T COG1457         150 RALHKLERIAVPLLLL  165 (442)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4456665555544433

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.15  E-value=0.045  Score=56.36  Aligned_cols=75  Identities=16%  Similarity=0.134  Sum_probs=54.0

Q ss_pred             Hhhhhhhhhch-hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhhhHh
Q 046376           34 VSSGIGIQALF-LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLCVFP  110 (414)
Q Consensus        34 ~~~~iG~GiL~-LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~~~~  110 (414)
                      +.+++|+|++. .+.+..+.|.....+..++.+++...++.-+.+...+.+  +.-++-+.+++.+|++.|....+..
T Consensus         7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p--~~Gg~y~y~~~~lg~~~Gf~~gw~y   82 (478)
T PF00324_consen    7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP--SAGGFYAYASRGLGPALGFAAGWAY   82 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc--cccchhhhhhhccCCcCCceeeHHH
Confidence            45678888766 778899999866667777777777777777777765433  2345667778899998887776663

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00813 sss transporter, SSS family

Probab=95.94  E-value=1.2  Score=44.91  Aligned_cols=143  Identities=18%  Similarity=0.141  Sum_probs=76.1

Q ss_pred             cCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376           22 RNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~  100 (414)
                      |+-+++...+.+..+.+| ...++.|....+.|+. +................+..+..++   .+..|..|.-++-||+
T Consensus         3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~T~~e~l~~Ryg~   78 (407)
T TIGR00813         3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN---NGAYTMPEYLEKRFGK   78 (407)
T ss_pred             CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---cCCCchhHHHHHHhCc
Confidence            445566666777666665 5667788888888864 2222222222222333444443332   2357999999999998


Q ss_pred             ccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHHH
Q 046376          101 KLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFSK  180 (414)
Q Consensus       101 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s~  180 (414)
                      +..+.+..+..+...+.....-+...+..++.+..             .+.+.-+++.+++++..+.. .-++...|+..
T Consensus        79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-------------i~~~~~~ii~~~i~~~Yt~~-GG~~av~~Td~  144 (407)
T TIGR00813        79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-------------LDLYLSLLLLGAITILYTVF-GGLKAVVWTDT  144 (407)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------chHHHHHHHHHHHHHHHHHH-cchHHHHHHHH
Confidence            65666543333323344444455555555554331             11122334444444455556 66666666654


Q ss_pred             HH
Q 046376          181 TG  182 (414)
Q Consensus       181 ~~  182 (414)
                      +=
T Consensus       145 iQ  146 (407)
T TIGR00813       145 IQ  146 (407)
T ss_pred             HH
Confidence            44

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]

Probab=95.42  E-value=2.5  Score=45.03  Aligned_cols=161  Identities=14%  Similarity=0.170  Sum_probs=88.5

Q ss_pred             CCceehhhHHHHhhhhhhhh-chhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCC--CCCccccCHHHHHHHhcC
Q 046376           23 NGNTFSTVFHIVSSGIGIQA-LFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEP--VPGTRYSRYMQVAKAAFG   99 (414)
Q Consensus        23 ~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~--~~~~~~~sy~~l~~~~~G   99 (414)
                      -|+......-.+..+.|.=. +-|-|....+|...|.++.+.++..+..|+.-+...+..  +++  --+|--+.| .+|
T Consensus       114 mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpa--GGsYfmISR-sLG  190 (1075)
T KOG2082|consen  114 MGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPA--GGSYFMISR-SLG  190 (1075)
T ss_pred             cceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCeeEEEec-ccC
Confidence            34555555555566666433 347888888899999999999988888888777666532  221  136766664 467


Q ss_pred             CccchhhhhHhHHHhhhhhhHHHHHHHHhhHHH-HHHHH--hC-CCccccc--CCCCcchhhHhHHHHHHH--HhhhccC
Q 046376          100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLET-LYKIM--CG-GIATCEA--KSLPGVVWCLLFICIAIV--VSQLLPN  171 (414)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~-~~~~~--~~-~~~~~~~--~~~~~~~~~~i~~~~~lp--Ls~l~~~  171 (414)
                      |..|-.+..+.++.+. -+..-|++.+-+.+-. +++..  ++ +++..+.  -..+.+.|--++.+++..  ..-. |-
T Consensus       191 PEFGgAVGlcFYLgtT-~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GV-K~  268 (1075)
T KOG2082|consen  191 PEFGGAVGLCFYLGTT-VAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGV-KF  268 (1075)
T ss_pred             ccccceeeehhhhhhH-HHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHH-HH
Confidence            7777777766665552 2333366655544322 33221  11 1111111  112345665443333332  2334 55


Q ss_pred             ccchhhHHHHHHHHHHH
Q 046376          172 LNSVLKFSKTGTVTAVV  188 (414)
Q Consensus       172 l~~l~~~s~~~~~~~~~  188 (414)
                      .++++..++..++.++.
T Consensus       269 Vnk~A~vfL~CVILSIl  285 (1075)
T KOG2082|consen  269 VNKFAPVFLACVILSIL  285 (1075)
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            56666666666555443

>PRK00701 manganese transport protein MntH; Reviewed

Probab=95.35  E-value=3.8  Score=41.77  Aligned_cols=44  Identities=14%  Similarity=0.048  Sum_probs=24.5

Q ss_pred             cCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHH
Q 046376           88 SRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLET  132 (414)
Q Consensus        88 ~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~  132 (414)
                      .+..|+.++-+|+++.+.......+. +.+..++-.+..+..++.
T Consensus        94 ~~l~~~ir~~~~~~~~~~~~~~~~l~-~~~~~~~e~~G~a~al~l  137 (439)
T PRK00701         94 RDLAQACRDRYPRPVVWFLWIQAELA-IMATDLAEVIGAAIALKL  137 (439)
T ss_pred             CCHHHHHHHHCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            46789999999985544443333222 244455555544444443

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=95.13  E-value=1.4  Score=44.30  Aligned_cols=143  Identities=14%  Similarity=0.088  Sum_probs=67.7

Q ss_pred             cCCceehhhHHHHhhhhhh-hhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376           22 RNGNTFSTVFHIVSSGIGI-QALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~  100 (414)
                      |+-+++...+.+..+.+|+ ..++.|....+.|+.. ....+............+.+-.++   .+..|..|.-++-||+
T Consensus         6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~---~~~~T~~e~~~~Ryg~   81 (406)
T PF00474_consen    6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR---SGAVTIPEYLEKRYGS   81 (406)
T ss_dssp             S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH---TT--SHHHHHHHHT-H
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc---cchhhhhhhhhhhcCC
Confidence            4455666777777777764 6778898888888753 333333222222333333332221   2357899999999998


Q ss_pred             cc-chhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHH
Q 046376          101 KL-AKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFS  179 (414)
Q Consensus       101 ~~-~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s  179 (414)
                      +. .+.+.....+........+.+...+..++.+.    +         .+....+++.+++.+..+.. --++...++.
T Consensus        82 ~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~----g---------i~~~~~~~i~~~i~~iYt~~-GGl~av~~td  147 (406)
T PF00474_consen   82 KALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF----G---------IPYNTAILIVGVIVIIYTFF-GGLRAVAWTD  147 (406)
T ss_dssp             HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----T-----------HHHHHHHHHHHHHHTTCT-T------SHH
T ss_pred             chhhhhhcccccchhhhhhhhccccccccchhhcc----c---------hhhhHHHHHHHHHHHHhhhh-hhHhhhhHHH
Confidence            65 34444332222223344444444454444432    1         11223334445555555666 6677777665


Q ss_pred             HHH
Q 046376          180 KTG  182 (414)
Q Consensus       180 ~~~  182 (414)
                      .+=
T Consensus       148 ~iQ  150 (406)
T PF00474_consen  148 FIQ  150 (406)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=94.96  E-value=5.8  Score=41.72  Aligned_cols=82  Identities=16%  Similarity=0.132  Sum_probs=43.8

Q ss_pred             cCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376           22 RNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQI-YTIWLLVHLAEPVPGTRYSRYMQVAKAAFG   99 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~-~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G   99 (414)
                      |+-+++...+.+..+.++ ...++.|....+.|+- +....+.. .+.+ .....+.+-.++   ....|.+|.-++=||
T Consensus        67 r~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g~-~~~~~i~~~~~a~~lrr---~g~~T~~d~l~~Rf~  141 (549)
T TIGR02711        67 GNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLGF-LVGWPIILFLIAERLRN---LGRYTFADVASYRLK  141 (549)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHH-HHHHHHHHHHHHHHHHH---cCCccHHHHHHHHcC
Confidence            344456556666666555 6778899888888864 32222111 1111 122223332221   124799998887787


Q ss_pred             Cccchhhhh
Q 046376          100 PKLAKSLCV  108 (414)
Q Consensus       100 ~~~~~~~~~  108 (414)
                      .+..+.+..
T Consensus       142 s~~~r~l~a  150 (549)
T TIGR02711       142 QRPIRILSA  150 (549)
T ss_pred             CcchhHHHH
Confidence            655555543

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=94.92  E-value=4.8  Score=40.61  Aligned_cols=54  Identities=20%  Similarity=0.022  Sum_probs=39.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHcCCchhhhhhhccccc-cchhhhhhhhhhhhcCC
Q 046376          317 RRVRAAYRFFFTGLISLLSVAFPFFPSLAPFMGGLTL-PFKFSYPCLMYNLIKKP  370 (414)
Q Consensus       317 ~~~r~~~r~~~v~~~~~iA~~vp~~~~v~~l~Ga~~~-~l~filP~l~~l~~~k~  370 (414)
                      +.+|...|....+.+..+...+-+.+.++.+.+.+.+ .+-+.++++..+..+|+
T Consensus       324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~  378 (416)
T COG1914         324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK  378 (416)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence            5567888877777766665555588889999999877 77777767766665554

>PRK11017 codB cytosine permease; Provisional

Probab=94.78  E-value=5.1  Score=40.31  Aligned_cols=23  Identities=17%  Similarity=0.054  Sum_probs=17.2

Q ss_pred             ccCHHHHHHHhcCCccchhhhhH
Q 046376           87 YSRYMQVAKAAFGPKLAKSLCVF  109 (414)
Q Consensus        87 ~~sy~~l~~~~~G~~~~~~~~~~  109 (414)
                      ..++.-++|..||.+..++....
T Consensus        70 G~~~~v~sR~~FG~~Gs~l~~~~   92 (404)
T PRK11017         70 GLSTHLLARFSFGEKGSWLPSLL   92 (404)
T ss_pred             CcCHHHHHHHHhchhHHHHHHHH
Confidence            46899999999999655554443

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=94.65  E-value=4  Score=42.08  Aligned_cols=35  Identities=3%  Similarity=0.115  Sum_probs=23.1

Q ss_pred             HHcCCchhhhhhhccc-cc-cchhhhhhhhhhhhcCC
Q 046376          336 VAFPFFPSLAPFMGGL-TL-PFKFSYPCLMYNLIKKP  370 (414)
Q Consensus       336 ~~vp~~~~v~~l~Ga~-~~-~l~filP~l~~l~~~k~  370 (414)
                      ..+++-..+-+++++- .. .++|..|..+-+-..|+
T Consensus       408 l~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~  444 (550)
T KOG1289|consen  408 LILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRD  444 (550)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeeccc
Confidence            3456655555655543 44 89999999988766443

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=94.01  E-value=0.12  Score=52.70  Aligned_cols=48  Identities=21%  Similarity=0.182  Sum_probs=30.6

Q ss_pred             cCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHH
Q 046376           88 SRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKI  136 (414)
Q Consensus        88 ~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~  136 (414)
                      .++.-++|..||.+..++...+..+ .+.|=...-..+.++.+..+.+.
T Consensus        71 l~~~v~sR~~FG~~Gs~l~~~l~~i-~~igW~av~~~~~g~al~~~~~~  118 (440)
T PF02133_consen   71 LPTMVLSRASFGYRGSKLPSLLRAI-SAIGWFAVNTWLGGQALAALLGI  118 (440)
T ss_dssp             --HHHHTTTTS-TTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCchhcchhccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Confidence            5788999999998655555444333 33555555667788888887764

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>TIGR00835 agcS amino acid carrier protein

Probab=93.16  E-value=7.1  Score=39.50  Aligned_cols=78  Identities=13%  Similarity=0.069  Sum_probs=46.3

Q ss_pred             CceehhhHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHH---HHHHHHHHHHHHhccCCCCCccccCH-----HHHH
Q 046376           24 GNTFSTVFHIVSSGIGIQ-ALFLPVGFATLGWTWGIICLLTA---FAWQIYTIWLLVHLAEPVPGTRYSRY-----MQVA   94 (414)
Q Consensus        24 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~ill~~~---~~~~~~t~~ll~~~~~~~~~~~~~sy-----~~l~   94 (414)
                      -|-+++.+....+.+|+| ++++|-|.+..| ..+++.+-+.   +..+.|.-..|..-++++++  +.+|     -.+-
T Consensus        47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~--~g~~~GGP~yyi~  123 (425)
T TIGR00835        47 VSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA--DGVFRGGPMYYIK  123 (425)
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC--CCCEecChHHHHH
Confidence            466899999999999998 999999988777 3343333333   33333433333332221111  2224     5677


Q ss_pred             HHhcCCccch
Q 046376           95 KAAFGPKLAK  104 (414)
Q Consensus        95 ~~~~G~~~~~  104 (414)
                      +...||+.+.
T Consensus       124 ~gl~~k~lg~  133 (425)
T TIGR00835       124 KGLGMRWLAV  133 (425)
T ss_pred             HHhCccHHHH
Confidence            7766664333

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PRK12488 acetate permease; Provisional

Probab=92.19  E-value=17  Score=38.16  Aligned_cols=82  Identities=12%  Similarity=0.116  Sum_probs=45.4

Q ss_pred             cCCceehhhHHHHhhhhhhh-hchhHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHH-hccCCCCCccccCHHHHHHHhc
Q 046376           22 RNGNTFSTVFHIVSSGIGIQ-ALFLPVGFATLGWTWGIICLLTAFAWQIY-TIWLLV-HLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~ill~~~~~~~~~-t~~ll~-~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      |+-+++...+.+..+.++++ .++.|....+.|+- +...... ..+.+. ....+. +.++    .+..|.+|.-++=|
T Consensus        67 R~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr~----~g~~T~~d~l~~Rf  140 (549)
T PRK12488         67 GGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALG-VLAGWPIILFLIAERLRN----LGKYTFADVVSYRL  140 (549)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHHH----CCCcchHHHHHHHc
Confidence            44566777777777766644 57899888888874 2222111 111111 112222 2232    12478999888878


Q ss_pred             CCccchhhhhH
Q 046376           99 GPKLAKSLCVF  109 (414)
Q Consensus        99 G~~~~~~~~~~  109 (414)
                      |++..|.+..+
T Consensus       141 ~s~~~r~laai  151 (549)
T PRK12488        141 AQGPVRLTAAF  151 (549)
T ss_pred             CCCcchHHHHH
Confidence            85555555443

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=91.75  E-value=18  Score=37.47  Aligned_cols=100  Identities=18%  Similarity=0.086  Sum_probs=59.8

Q ss_pred             hhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccc
Q 046376           28 STVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLL---TAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLA  103 (414)
Q Consensus        28 ~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~---~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~  103 (414)
                      -..+....+.++ .-.+++|....+.|+...-....   +....-.+-...+.+..++   .+..|..|.-++-||++..
T Consensus        44 v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~---~~~~T~~d~l~~Rf~s~~l  120 (493)
T COG0591          44 VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA---RGATTIPDFLEARFGSKIL  120 (493)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccHHHHHHHHcCChHH
Confidence            444555555555 78889999999999864322222   3333444445555555532   3467999999999995466


Q ss_pred             hhhhhHhHHHhhhhhhHHHHHHHHhhH
Q 046376          104 KSLCVFPVWYLSGGTCIMLIITAGADL  130 (414)
Q Consensus       104 ~~~~~~~~~~~~~g~~i~y~i~~~~~l  130 (414)
                      +.+..+..+.....-+..-+...+..+
T Consensus       121 r~l~ali~iv~~i~yia~ql~~~~~~~  147 (493)
T COG0591         121 RILSALIIIVFFIPYIALQLVAGGLLL  147 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666544444443555555555555544

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=88.87  E-value=9.2  Score=37.68  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=70.9

Q ss_pred             CCCccccccC------CceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHH----HHHHHHHHHHhccCCCC
Q 046376           14 DWLPLTASRN------GNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFA----WQIYTIWLLVHLAEPVP   83 (414)
Q Consensus        14 ~~~~~~~~~~------~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~----~~~~t~~ll~~~~~~~~   83 (414)
                      .-.|.|+.+.      .+.+...-|=..++-|+|-.-=|-.=.+-||+++.+..++-++    .--|....+   +-++.
T Consensus        36 ~~TPA~~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~---SvR~~  112 (376)
T PF02554_consen   36 RPTPAHTMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMA---SVRHK  112 (376)
T ss_pred             CCCCeeECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhh---hhcCC
Confidence            3366665443      3455666677788999999999998899999999887765433    333332222   11222


Q ss_pred             CccccCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhH
Q 046376           84 GTRYSRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADL  130 (414)
Q Consensus        84 ~~~~~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l  130 (414)
                      |   +|.+|++++..||+.++.....+.+.+ .-...++....++.+
T Consensus       113 G---~Si~~i~~~~lG~~~~~lf~~f~~~~l-ilV~avF~~v~a~~~  155 (376)
T PF02554_consen  113 G---KSIGEIAGKYLGKRAKKLFLIFIFFLL-ILVIAVFADVVANTF  155 (376)
T ss_pred             C---ccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence            3   589999999999976666665554433 445555555554433

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2

Probab=88.25  E-value=28  Score=34.30  Aligned_cols=76  Identities=22%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             CHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhh-
Q 046376           89 RYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQ-  167 (414)
Q Consensus        89 sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~-  167 (414)
                      +-.|..++-+||++.++......+. +.....+-....+..++.+.    +         .+...+.++.++..+-+.+ 
T Consensus        43 ~l~~~~~~~~g~~~~~~~~~~~~l~-~~~~~~~~~~g~a~al~ll~----g---------~~~~~~~~~~~~~~~~ll~~  108 (358)
T PF01566_consen   43 GLAEGIRERFGRGWAWFLWILIFLA-NIATQAAEIIGIAIALNLLF----G---------IPLWIWVLLVAVIAILLLWL  108 (358)
T ss_pred             ChhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc----C---------CCcHHHHHHHHHHHHHHHHH
Confidence            5677777778886666555444333 24555555555555554432    1         1234555555544444444 


Q ss_pred             -hccCccchhhHH
Q 046376          168 -LLPNLNSVLKFS  179 (414)
Q Consensus       168 -l~~~l~~l~~~s  179 (414)
                       . ++.+.+....
T Consensus       109 ~~-~~y~~~E~~~  120 (358)
T PF01566_consen  109 SS-GGYRRLERIL  120 (358)
T ss_pred             Hh-ccchHHHHHH
Confidence             5 6677765543

The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=87.29  E-value=34  Score=34.18  Aligned_cols=80  Identities=13%  Similarity=0.066  Sum_probs=47.0

Q ss_pred             HHHHhhhhhhhhchhHHHHHh-h--ChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhh
Q 046376           31 FHIVSSGIGIQALFLPVGFAT-L--GWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLC  107 (414)
Q Consensus        31 ~~l~~~~iG~GiL~LP~af~~-~--G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~  107 (414)
                      +.+..-.+|+|.|-.|-...+ .  .|..+++..++.+...-..+..    .-.+.|   -+|++++++ +||+.+....
T Consensus         2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~g---G~~~~l~~~-~g~~f~~lf~   73 (378)
T TIGR00796         2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVG---GGYDSLSAR-IGKVFGILFT   73 (378)
T ss_pred             hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecC---CCHHHHHHH-hChHHHHHHH
Confidence            345566899999998876443 2  3555555555555544333322    221112   379999987 6777777776


Q ss_pred             hHhHHHhhhhhhH
Q 046376          108 VFPVWYLSGGTCI  120 (414)
Q Consensus       108 ~~~~~~~~~g~~i  120 (414)
                      +..++  ++|-+.
T Consensus        74 ~~~~l--~iGP~~   84 (378)
T TIGR00796        74 VILYL--TIGPLF   84 (378)
T ss_pred             HHHHH--HHHhch
Confidence            66543  355443

transmembrane helical spanners.

>PRK15015 carbon starvation protein A; Provisional

Probab=86.85  E-value=12  Score=39.69  Aligned_cols=82  Identities=18%  Similarity=0.170  Sum_probs=54.8

Q ss_pred             ceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH----HHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376           25 NTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQ----IYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        25 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~----~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~  100 (414)
                      +-+-..-|=..++-|+|-+-=|.--++.||++|.+..++-.++.    -|....   .+-++   +-+|.+|++++..|+
T Consensus        84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~---~S~R~---~GrSig~ia~~~iG~  157 (701)
T PRK15015         84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLF---VSTRR---DGRSLGELVKEEMGP  157 (701)
T ss_pred             CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhhee---eeecC---CCccHHHHHHHHhhH
Confidence            33445557778899999999999999999999998887643321    111111   11222   235899999999999


Q ss_pred             ccchhhhhHhHH
Q 046376          101 KLAKSLCVFPVW  112 (414)
Q Consensus       101 ~~~~~~~~~~~~  112 (414)
                      +.+........+
T Consensus       158 ~~~~lfli~i~~  169 (701)
T PRK15015        158 TAGVIALVACFM  169 (701)
T ss_pred             HHHHHHHHHHHH
Confidence            766555444433

>PRK09395 actP acetate permease; Provisional

Probab=86.37  E-value=47  Score=34.93  Aligned_cols=82  Identities=12%  Similarity=0.064  Sum_probs=44.0

Q ss_pred             cCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376           22 RNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~  100 (414)
                      |+-++|...+.+..+.++ ...++.|......||.. ........+........+.+-.++   ....|+.|.-++=||+
T Consensus        69 r~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~---~g~~T~~d~l~~Rygs  144 (551)
T PRK09395         69 GGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRN---LGKYTFADVASYRLKQ  144 (551)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhh---CCCccHHHHHHHHcCC
Confidence            345556666666666666 45677888888888742 221111111111112222222221   1347999998888986


Q ss_pred             ccchhhh
Q 046376          101 KLAKSLC  107 (414)
Q Consensus       101 ~~~~~~~  107 (414)
                      +..+...
T Consensus       145 ~~~r~l~  151 (551)
T PRK09395        145 GPIRTLS  151 (551)
T ss_pred             chHHHHH
Confidence            5455443

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=85.40  E-value=15  Score=36.60  Aligned_cols=130  Identities=12%  Similarity=0.097  Sum_probs=68.8

Q ss_pred             HHHhhhhhhhhch----hHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCCccchhhh
Q 046376           32 HIVSSGIGIQALF----LPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGPKLAKSLC  107 (414)
Q Consensus        32 ~l~~~~iG~GiL~----LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~  107 (414)
                      ++++++-+-|+-.    .|.+. ..|.+.++.+..+...+.+....-..+..+.+  .+..-..+++++.||+..+.++.
T Consensus       198 iiv~~i~~~g~~~~~~~~~~~i-~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~--~~~~~l~~~a~~~~G~~G~~ll~  274 (378)
T TIGR00796       198 IVVNAIRSRGVTKPKKITKYTI-KAGLIAAVLLAFIYLSLFYLGATSAAAAGDAV--NGAQILSAYSQHLFGSLGSFLLG  274 (378)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHhhhcccC--CcHHHHHHHHHHHcchhHHHHHH
Confidence            3444444445432    33333 34555455555544444444332211111111  12345678999999994444445


Q ss_pred             hHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhhhccCccchhhHH
Q 046376          108 VFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQLLPNLNSVLKFS  179 (414)
Q Consensus       108 ~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~l~~~l~~l~~~s  179 (414)
                      ... ..-|++++++.+...+|.++++.+            ..+...|.++.++....++..  .++++--++
T Consensus       275 i~v-~lACLtT~iGli~~~a~~f~~~~~------------k~~y~~~v~~~~l~s~~ia~~--Gl~~Ii~~~  331 (378)
T TIGR00796       275 LII-TLACLTTAVGLTTACSEYFHKLVP------------KLSYKTWVIVFTLFSFIVANL--GLTQIISIS  331 (378)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHhcC------------CCCHHHHHHHHHHHHHHHHHh--CHHHHHHHH
Confidence            444 445899999999998887776532            123455666655555544444  455544433

transmembrane helical spanners.

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=84.96  E-value=50  Score=34.04  Aligned_cols=79  Identities=13%  Similarity=0.033  Sum_probs=40.6

Q ss_pred             cCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHh-ccCCCC-CccccCHHHHHHHhc
Q 046376           22 RNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVH-LAEPVP-GTRYSRYMQVAKAAF   98 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~-~~~~~~-~~~~~sy~~l~~~~~   98 (414)
                      |+-+++-..+.+..+.++ .-.++.|....+.|+.. ........+........+.+ .++..+ ..+..|-.|.-++=|
T Consensus        36 r~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ry  114 (487)
T TIGR02121        36 RSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRF  114 (487)
T ss_pred             CcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHh
Confidence            444566666666666655 34667887777778742 22222111112222223322 221100 123568889888889


Q ss_pred             CCc
Q 046376           99 GPK  101 (414)
Q Consensus        99 G~~  101 (414)
                      |++
T Consensus       115 g~~  117 (487)
T TIGR02121       115 NDK  117 (487)
T ss_pred             CCC
Confidence            864

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=83.68  E-value=24  Score=36.66  Aligned_cols=80  Identities=16%  Similarity=0.127  Sum_probs=55.2

Q ss_pred             CCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH----HHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376           23 NGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQ----IYTIWLLVHLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        23 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~----~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      ..+.+...-|=..++-|+|-+-=|---++.||.+|++.+++-.++.    -|...   -.+-++   +-.|-+|++++..
T Consensus        51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L---~~SvR~---~G~Si~~ia~~~l  124 (575)
T COG1966          51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSL---MLSVRH---GGKSIGEIAGKYL  124 (575)
T ss_pred             cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhhe---eeeecc---CCccHHHHHHHHh
Confidence            3456667777778899999999999999999999998887643332    11100   011122   2358999999999


Q ss_pred             CCccchhhhh
Q 046376           99 GPKLAKSLCV  108 (414)
Q Consensus        99 G~~~~~~~~~  108 (414)
                      |++.+.+...
T Consensus       125 G~~a~~~~~~  134 (575)
T COG1966         125 GRTAKVFFLL  134 (575)
T ss_pred             hhhHHHHHHH
Confidence            9965555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.29
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.68
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.52
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	97.61
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	95.76
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	94.17

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.29  E-value=3.3e-11  Score=120.85  Aligned_cols=108  Identities=15%  Similarity=0.126  Sum_probs=75.0

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcC
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFG   99 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G   99 (414)
                      ++|+-+.++.++..+.+++|+|++.+|...++.|.. +.+..++.++..........|...+.|.  .-.+-+.+++.+|
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~G   82 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS--PGGSYAYARRCFG   82 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC--TTTHHHHHHHHSC
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC--CCCchhhHHhHcC
Confidence            345678899999999999999999999999999964 6777777777777777777776543332  2355667789999


Q ss_pred             CccchhhhhHhHHHhhhhhhHHHHHHHHhhHH
Q 046376          100 PKLAKSLCVFPVWYLSGGTCIMLIITAGADLE  131 (414)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~  131 (414)
                      |..+....+...+.. .....++....++.++
T Consensus        83 ~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~  113 (445)
T 3l1l_A           83 PFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLS  113 (445)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            977777666554432 3334445544454443

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.68  E-value=2.9e-07  Score=91.99  Aligned_cols=79  Identities=10%  Similarity=0.041  Sum_probs=58.3

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhc
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVG-FATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAF   98 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~   98 (414)
                      ++|+-+.++..+..+++++|+|++.+|.. ...+|- .+.+..++.+++.......+.|...+.|.  .-..-+.+++.+
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~--~Gg~y~~~~~~~   80 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS--NAGPIAFIHKAI   80 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC--TTTHHHHHHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcHHHhHHHHh
Confidence            34566888999999999999999997744 555675 56677777777777777778887665443  234557788889


Q ss_pred             CCc
Q 046376           99 GPK  101 (414)
Q Consensus        99 G~~  101 (414)
                      |++
T Consensus        81 G~~   83 (444)
T 3gia_A           81 GDN   83 (444)
T ss_dssp             CSS
T ss_pred             Ccc
Confidence            985

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.52  E-value=1.1e-05  Score=81.99  Aligned_cols=86  Identities=15%  Similarity=0.089  Sum_probs=49.0

Q ss_pred             cccCCceehhhHHHHhhhhhhhhchhHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhccC--CCCCccccCHHHHHHH
Q 046376           20 ASRNGNTFSTVFHIVSSGIGIQALFLPVGFATLGWTWGIICLLTAFAWQ-IYTIWLLVHLAE--PVPGTRYSRYMQVAKA   96 (414)
Q Consensus        20 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~ill~~~~~~~-~~t~~ll~~~~~--~~~~~~~~sy~~l~~~   96 (414)
                      .+|+-+.++.++-.++.++|  +.++|. .+..|.. +++..++.+++. ......+.|...  ..|   .-..-..+++
T Consensus         9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P---~GG~y~~~~~   81 (511)
T 4djk_A            9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE---EGGVFAWVSN   81 (511)
T ss_dssp             ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC---CCChhhhHHh
Confidence            45667888888888888885  567775 5677754 333333333322 224555566555  444   2345567788


Q ss_pred             hcCCccchhhhhHhHH
Q 046376           97 AFGPKLAKSLCVFPVW  112 (414)
Q Consensus        97 ~~G~~~~~~~~~~~~~  112 (414)
                      .+|++++....+...+
T Consensus        82 ~~g~~~g~~~g~~~~~   97 (511)
T 4djk_A           82 TLGPRWGFAAISFGYL   97 (511)
T ss_dssp             HHCHHHHHHHHHHHHH
T ss_pred             hcCchHHHHHHHHHHH
Confidence            8999777655544433

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=97.61  E-value=0.0035  Score=63.55  Aligned_cols=84  Identities=13%  Similarity=0.126  Sum_probs=54.1

Q ss_pred             cCHHHHHHHhcCCccchhhhhHhHHHhhhhhhHHHHHHHHhhHHHHHHHHhCCCcccccCCCCcchhhHhHHHHHHHHhh
Q 046376           88 SRYMQVAKAAFGPKLAKSLCVFPVWYLSGGTCIMLIITAGADLETLYKIMCGGIATCEAKSLPGVVWCLLFICIAIVVSQ  167 (414)
Q Consensus        88 ~sy~~l~~~~~G~~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lpLs~  167 (414)
                      .+|.++.|..||++..++...+..+ .++|-...-....++.++.+.+...+.        .+...+.++++++.++..+
T Consensus        88 l~~~v~~R~~FG~~Gs~i~~ll~~i-~~igw~~v~~~~gg~al~~~~~~~~g~--------~~~~v~~~i~~~l~~~~~~  158 (501)
T 2jln_A           88 INFTVAARMPFGIRGSLIPITLKAL-LSLFWFGFQTWLGALALDEITRLLTGF--------TNLPLWIVIFGAIQVVTTF  158 (501)
T ss_dssp             CCHHHHTTTTSCTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHT
T ss_pred             CChhhhhHhhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCc--------chHHHHHHHHHHHHHHHHH
Confidence            5799999999999766666555444 346666666777888888776543321        1123456667777777765


Q ss_pred             hccCccchhhHHHHH
Q 046376          168 LLPNLNSVLKFSKTG  182 (414)
Q Consensus       168 l~~~l~~l~~~s~~~  182 (414)
                      .  .++.++++....
T Consensus       159 ~--G~~~i~~~~~~~  171 (501)
T 2jln_A          159 Y--GITFIRWMNVFA  171 (501)
T ss_dssp             T--HHHHHHHHHHHH
T ss_pred             h--CHHHHHHHHHHH
Confidence            4  566666655544

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=95.76  E-value=0.81  Score=46.35  Aligned_cols=98  Identities=9%  Similarity=0.015  Sum_probs=52.3

Q ss_pred             hhccCCCCCCCCCccccccCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 046376            4 VQKLQPNSLDDWLPLTASRNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPV   82 (414)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~   82 (414)
                      -.|++.++.||+.-  ..|+-+++...+.+..+.++ ...+++|....+.|+......... ++.-......+.....+ 
T Consensus         4 ~~~~~~~~~~dy~l--aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~-   79 (530)
T 3dh4_A            4 XXXXXXXXXXXXXX--AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE-   79 (530)
T ss_dssp             HHHHHHHHHHHHHC--CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH-
T ss_pred             ccccccccccccCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH-
Confidence            34444455555522  23455667777777766665 567789998888887532111110 00001111122222221 


Q ss_pred             CCccccCHHHHHHHhcCCccchhhh
Q 046376           83 PGTRYSRYMQVAKAAFGPKLAKSLC  107 (414)
Q Consensus        83 ~~~~~~sy~~l~~~~~G~~~~~~~~  107 (414)
                        .+..|..|.-++-||++.+.+..
T Consensus        80 --~~~~T~~e~l~~Rfg~~~~~~~a  102 (530)
T 3dh4_A           80 --KGIYTIPEFVEKRFNKKLKTILA  102 (530)
T ss_dssp             --TTCCSHHHHHHHHTCHHHHHHHH
T ss_pred             --cCCccHHHHHHHHcCcHHHHHHH
Confidence              23579999999999986444433

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=94.17  E-value=5.8  Score=40.61  Aligned_cols=81  Identities=14%  Similarity=0.107  Sum_probs=42.1

Q ss_pred             cCCceehhhHHHHhhhhh-hhhchhHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCHHHHHHHhcCC
Q 046376           22 RNGNTFSTVFHIVSSGIG-IQALFLPVGFATLGWTWGIICLLTAFAWQIYTIWLLVHLAEPVPGTRYSRYMQVAKAAFGP  100 (414)
Q Consensus        22 ~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~ill~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~  100 (414)
                      |+-+++...+.+..+.++ ...++.|..-.+.|+.............-......+-+.++    .+..|..|.-++=||+
T Consensus        49 R~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r----~~~~T~~e~l~~Rfg~  124 (593)
T 2xq2_A           49 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIE----KGIYTIPEFVEKRFNK  124 (593)
T ss_dssp             --CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHH----TTCCSHHHHHHHHTCH
T ss_pred             CCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCCcHHHHHHHccC
Confidence            445667677777665555 55568898888888743211111000000111111222222    2357899998888998


Q ss_pred             ccchhh
Q 046376          101 KLAKSL  106 (414)
Q Consensus       101 ~~~~~~  106 (414)
                      +.+.+.
T Consensus       125 ~~~~~~  130 (593)
T 2xq2_A          125 KLKTIL  130 (593)
T ss_dssp             HHHHHH
T ss_pred             chHHHH
Confidence            644443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00