Citrus Sinensis ID: 046380

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MEAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQYVGQLENFPTLNFAPCDLDADLLLVVFE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccccccccccccccccccccEEEEEEccEEEcccccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccccccEEEcccccEEEEEccEEcccccccccccHHcccccccHHHccccccccccccEEEEEccccccccccccHHHHcEEEEEEEEcccccccEEEccccccEEEEccccccEEEEEEccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEccccccccEEEEccEEEEEEEcccccccEEEEEcccEEEEEEEcccccccccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccEEEEccEEEEEEEcccEEEcccccEEEEEEEEEcccHHHHHHHHHccccHHHEEEcccccEEEEEcccccccEEEEEEccccccEEEEEEEccEEcccccEEEEEEEEccccccccEEEEEcccEEEEEEEccccccccEcccccEEEEEEEEEEccccccccEEccccccEEEEEEcccEEEEEEEccccccccEEEEEEEEEccccHHHHHHHHHHcccHHHHHHccccccccEEEEEcccccccEccccccccccEEEccHHEEEEEHcccccccccccccccccHHEEEEEEc
Coil and Loop (DISEMBL)
meaidrisflpddltHHIMSLLPMKDIARTSILSKRWMShwlcfpvqefdeswfkgrrescgrDFHEYLRRSLarrdfdnmqeLKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVrdhvgnslcdhyalprvifsSGSFLVSLTIRHCKIGAYQKNTVMGltlsnffnpsvRRLVVRGCMAlqgfemdaprlnyfqcsgirdfdeafvyrpdhfccrflefkvanensMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMencrfdgpveihspnletfvykaghgeiasfhfggrgfgnIKTLAVNGFLGLRNKSLEELISACILLEnlylnscaipkghLEIYSLTLKTLVVHgcdhlhfaeiqapQLLYFQYVgqlenfptlnfapcdldadLLLVVFE
Flexible Loop (DISEMBL)
meaidrisflpddlTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFHEYLRRSlarrdfdnmqELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVfgklpsslSSAILKKLKLVRMENCRFdgpveihspNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQYVGQLENFPTLNFAPCDLDADLLLVVFE
Low Complexity Region (SEG)
MEAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGklpsslssailkklklVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQYVGQLENFPTLNFAPCDLDADLLLVVFE
Disordered region (IsUnstruct)
*****RISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQYVGQLENFPTLNFAPCDLDADLLLVVF*
Disordered Region (DISOPRED)
MEAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQYVGQLENFPTLNFAPCDLDADLLLVVFE
Disordered Region (DISEMBL)
MEAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQYVGQLENFPTLNFAPCDLDADLLLVVFE
Disordered Region (DISPRO)
****DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQYVGQLENFPTLNFAPCDLDADLLLVVFE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQYVGQLENFPTLNFAPCDLDADLLLVVFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
Q8GXW6	482	F-box/LRR-repeat protein	yes	no	0.327	0.294	0.337	4e-11
Q9ZR09	498	Putative F-box/FBD/LRR-re	no	no	0.414	0.361	0.266	3e-10
O23257	434	Putative F-box/LRR-repeat	no	no	0.433	0.433	0.278	4e-09
Q9LXR4	454	Putative F-box/LRR-repeat	no	no	0.246	0.235	0.344	4e-08
Q9FJ30	540	Putative F-box/LRR-repeat	no	no	0.322	0.259	0.303	4e-08
Q9FNK0	502	Putative F-box/FBD/LRR-re	no	no	0.244	0.211	0.389	5e-08
Q8H1R7	419	F-box/FBD/LRR-repeat prot	no	no	0.423	0.439	0.262	5e-08
Q8H1M0	442	F-box/FBD/LRR-repeat prot	no	no	0.403	0.395	0.288	1e-07
Q9LX51	520	F-box/LRR-repeat protein	no	no	0.377	0.315	0.292	1e-07
Q9FM93	439	FBD-associated F-box prot	no	no	0.304	0.300	0.324	1e-07

>sp|Q8GXW6|FBL59_ARATH F-box/LRR-repeat protein At3g58930 OS=Arabidopsis thaliana GN=At3g58930 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 15/157 (9%)

Query: 4   IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWF------KGR 57
           +DR+S LPD +  HI+S LP K IA TS+LSK W++ W   P+ + D+S F      K  
Sbjct: 1   MDRVSNLPDGVRGHILSFLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEFLHPEEGKAE 60

Query: 58  RESCGRDFHEYLRRSLARRDFDNMQ--ELKIITYSQIDDELKHLITRFVAKEILRGKLQK 115
           R    + F +++ R LA +D   +    LK IT    D      + R++   + RG +  
Sbjct: 61  RLEIRQSFVDFVDRVLALQDDSPIDRFSLKCITGIHPDH-----VNRWICNVLQRG-VSD 114

Query: 116 LDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRH 152
           LDL +     ++  D   LP+ +F S + LV L IR+
Sbjct: 115 LDLFIDFSYEDTQEDEDMLPQEMFVSKT-LVKLKIRN 150

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZR09|FDL25_ARATH Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana GN=At4g03220 PE=4 SV=1

 Score = 67.0 bits (162), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 45/225 (20%)

Query: 4   IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDE-SWFKGRRESCG 62
           +DRIS LPD L H I+ LLP+K  A+ S+LSKRW S +L  P  +F   +  K  +    
Sbjct: 23  VDRISNLPDSLNHQILLLLPLKSAAQASLLSKRWRSLFLSLPDLDFTSINDLKNPKSFSS 82

Query: 63  RDFHEYLRRSLARRDFDNMQELKI---ITYSQIDDELKHLITRFVAKEILRGKLQKLDLH 119
              ++ L    + RD +N++ L+    +T++ ++  ++  +T          ++Q LD+ 
Sbjct: 83  NSIYKVLSLR-SHRDSNNLRSLRFRVPVTFTSLNSLIRLAVTH---------QVQDLDIE 132

Query: 120 VRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-----------GAYQKNTVMGLT- 167
           V         D++  PR I +S + L +LT++   +           G +QK T + L+ 
Sbjct: 133 VTTK------DYFNFPRWIVTSQN-LRALTLKSANLGFRLPPSSSARGGFQKLTSLSLSR 185

Query: 168 --------LSNFFN----PSVRRLVVRGCMALQGFEMDAPRLNYF 200
                   LS+FF     P + +L +  C  L+  ++    L  F
Sbjct: 186 VILHNQPCLSDFFTDPSFPLLEKLTLECCFGLKELKVSCRLLQEF 230

Arabidopsis thaliana (taxid: 3702)

>sp|O23257|FBL72_ARATH Putative F-box/LRR-repeat protein At4g13960 OS=Arabidopsis thaliana GN=At4g13960 PE=4 SV=1

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 20/208 (9%)

Query: 4   IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWF------KGR 57
           +D +S LPD++ +HI+S L  K+ A TSILSKRW + +   P  + D+S F      K  
Sbjct: 1   MDHVSSLPDEVLYHILSFLTTKEAALTSILSKRWRNLFTFVPNLDIDDSVFLHPQEGKED 60

Query: 58  RESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLD 117
           R    + F +++ R LA +    +++L +   +  D    H +  +++  + RG + +LD
Sbjct: 61  RYEIQKSFMKFVDRVLALQGNSPIKKLSLKLRTGFD---SHRVDGWISNALARG-VTELD 116

Query: 118 L-----HVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFF 172
           L      V   + +   D  A   +       LV  ++R C       N   G    N  
Sbjct: 117 LLIILNLVTLKLNSVRVDWLAAGDIFLPMLKTLVLHSVRLC-----VDNVNWGGKDVNVS 171

Query: 173 NPSVRRLVVRGCMALQGFEMDAPRLNYF 200
           N S++ L V   + L  F +D P L YF
Sbjct: 172 NASLKILTVNYNICLGTFSVDTPSLVYF 199

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR4|FBL56_ARATH Putative F-box/LRR-repeat protein At3g58880 OS=Arabidopsis thaliana GN=At3g58880 PE=4 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 9/116 (7%)

Query: 4   IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWF------KGR 57
           +D +S LPDDL  HI+SLL  K+ A TSILSKRW       P  EFD+S F      K  
Sbjct: 2   VDLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEFDDSAFLNPEEGKQT 61

Query: 58  RESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKL 113
           RE   + F +++ R LA      +++  +   + +D +   L+ +++   + RG L
Sbjct: 62  REGTRQSFIDFVDRVLALHGDSPIRKFSLKCKTGVDLD---LLNQWICNVLQRGVL 114

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 5   DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWF---KGRRESC 61
           DRIS LPD L  HI+S LP K+ A T++L+KRW       P   FD+S +   + RR   
Sbjct: 14  DRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARRNKY 73

Query: 62  GRDFHEYLR-----RSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKL 116
            + +  ++       +L  +    ++   +     +D   +  +  ++ K + RG L  +
Sbjct: 74  SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCEDVVD---QSWVLEWIPKVLKRGVLD-I 129

Query: 117 DLHV---RDHVGNSLCDHYALPRVIFSSGSFLVSLTIR 151
           DLH+   R++  NS    Y+LP  IF S + LV L I+
Sbjct: 130 DLHITSSRNYCENS--SFYSLPSKIFVSKT-LVRLKIQ 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNK0|FDL30_ARATH Putative F-box/FBD/LRR-repeat protein At5g22610 OS=Arabidopsis thaliana GN=At5g22610 PE=4 SV=1

 Score = 59.7 bits (143), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 61/118 (51%), Gaps = 12/118 (10%)

Query: 5   DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRD 64
           D IS LP+ L   I+S LP KDI RTS+LSKRW S WL  P  + D S F          
Sbjct: 18  DLISKLPEVLLSQILSYLPTKDIVRTSVLSKRWKSVWLLIPGLDLDSSEFPHYDT----- 72

Query: 65  FHEYLRRSL--ARRDFDNMQELKI-ITYSQIDDELKHLITRFVAKEILRGKLQKLDLH 119
           F +++   L  +R +   + +LK+ I  ++ D     L T  VA    RGKLQ LD+ 
Sbjct: 73  FVDFMNEFLFFSREENPCLHKLKLSIQKNENDPSCVTLWTDCVA----RGKLQHLDVE 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 45/229 (19%)

Query: 4   IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGR 63
           +DRIS L DDL   I+S +P KD+  TS+LSKRW S W+     E+D+S+  G  +S   
Sbjct: 1   MDRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTGDYKS--- 57

Query: 64  DFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDH 123
            F +++ RSL   +   ++ L +     +  +   +         L  +L++L +++R  
Sbjct: 58  -FSQFVYRSLLSNNAPVIKHLHL----NLGPDCPAIDIGLWIGFALTRRLRQLKINIRTS 112

Query: 124 VGNSLCDHYALPRVIFSSGSF------------------LVSLTIRHCKIGAYQKNTVMG 165
             ++    ++LP  +++S +                   L SL + H K   Y+ +  + 
Sbjct: 113 SNDA---SFSLPSSLYTSDTLETLRLINFVLLDVPSSVCLPSLKVLHLKTVDYEDDASLP 169

Query: 166 LTLSNFFNPSVRRLVVRGCMALQGFEMD----APRL--------NYFQC 202
             L  F  P++  L V      Q  EMD     P L        NY QC
Sbjct: 170 SLL--FGCPNLEELFVE--RHDQDLEMDVTFVVPSLRRLSMIDKNYGQC 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1M0|FDL16_ARATH F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana GN=At2g26030 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 26/201 (12%)

Query: 5   DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRD 64
           DRI  LPD L   ++S LP  D  +TS+LSKRW   WL  PV +   S F     +   D
Sbjct: 4   DRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSDFPDENYASFID 63

Query: 65  -FHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDH 123
            F E+ R+S  R+      +LK   Y+  DD L      +V   + RG +Q LD      
Sbjct: 64  NFLEFNRKSRMRK-----FKLKYDEYTYDDDRLAG----WVVTTVDRG-IQHLDAK---G 110

Query: 124 VGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT---------LSNFFNP 174
              ++C    +P+ I+   + LVSL +    +G      V+ L          +  + +P
Sbjct: 111 FETNMCVREFMPQNIYKCNT-LVSLML--VTVGIENPEFVVSLPSLKIMHLEDVWYYDDP 167

Query: 175 SVRRLVVRGCMALQGFEMDAP 195
            +   ++ GC  L+ F +  P
Sbjct: 168 LIMEKIISGCPVLEDFVLIRP 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 24/188 (12%)

Query: 5   DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFK-GRRES--- 60
           DRIS LP+ +  HI+S LP K+ A TS+LSK+W   +      +FD+S ++ G+ +S   
Sbjct: 7   DRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKSDVE 66

Query: 61  CGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHV 120
             R F E++ R LA +   ++ +   +  S  D +L   +T ++   + RG + +LDL +
Sbjct: 67  LSRSFMEFVDRVLALQGNGSVNKFS-LECSNYDVDLAR-VTGWILNVLGRG-VSELDLSI 123

Query: 121 RDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLV 180
            +         Y LP  IF      VS T+   K+G    +  + L   + F P ++ L 
Sbjct: 124 LE---------YPLPSEIF------VSKTLVRLKLGP-ANDLTLTLDRKDVFLPKLKTLY 167

Query: 181 VRGCMALQ 188
           +  C+ +Q
Sbjct: 168 I-DCVDVQ 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM93|FBD38_ARATH FBD-associated F-box protein At5g56380 OS=Arabidopsis thaliana GN=At5g56380 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 19/151 (12%)

Query: 4   IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFD------ESWFKGR 57
           +DRIS L D++   I+S L  KD+ +T +LSKR+ S WL  P  EFD      E+W  G 
Sbjct: 1   MDRISHLADEILSKILSFLGTKDVMQTMLLSKRFKSQWLLVPKLEFDDSTHLPETW--GY 58

Query: 58  RESCGRDFHEYLRRSLARRDFDNMQE--LKIITYSQIDDELKHLITRFVAKEILRGKLQK 115
           +E    +F  ++ RSL  R+   +Q   LK+      DD     I  +V   + RG L +
Sbjct: 59  QEPDYGNFRRFVDRSLLSREGRVLQTLFLKLGRQCSYDD-----IAIWVGIAVKRG-LME 112

Query: 116 LDLHVRDHVGNSLCDHYALPRVIFSSGSFLV 146
           L L   D   +      +LPR +++  + +V
Sbjct: 113 LKLKYTD---SYYPKRSSLPRSLYTCETLVV 140

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.700	0.648	0.269	2e-13
297743071	552	unnamed protein product [Vitis vinifera]	0.645	0.507	0.267	3e-13
225442254	520	PREDICTED: putative F-box protein At3g44	0.645	0.538	0.267	4e-13
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.700	0.648	0.263	5e-13
356557323	833	PREDICTED: uncharacterized protein LOC10	0.677	0.352	0.262	2e-12
224124628	524	f-box family protein [Populus trichocarp	0.649	0.538	0.267	9e-12
357513749	600	F-box/FBD/LRR-repeat protein [Medicago t	0.822	0.595	0.268	2e-11
30694890	482	F-box/LRR-repeat protein [Arabidopsis th	0.327	0.294	0.337	3e-09
7630088	455	putative protein [Arabidopsis thaliana]	0.327	0.312	0.337	3e-09
147810265	310	hypothetical protein VITISV_027852 [Viti	0.474	0.664	0.287	4e-09

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 164/360 (45%), Gaps = 56/360 (15%)

Query: 4   IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGR 63
           +D IS LPD +  HI+S L +K I +T+ILSKRW+  WL FP  EFD+++F    +   +
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 64  DFH--EYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVR 121
            FH   ++ ++L  +    +++ K+  ++   +    ++       +L   +Q+L++ V 
Sbjct: 61  RFHLINFVEQTL--KQLKCLRKFKL--HTDFPEPNSMVVVDRWIDYVLESGVQELEIVVT 116

Query: 122 DHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCK----IGAYQKNTVMGLTLSNFF--NPS 175
              G      Y LP+ +F++ S  V LT+  CK    +  Y+  ++  ++L   F  + +
Sbjct: 117 VENGK----RYNLPQRVFANQSLTV-LTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDET 171

Query: 176 VRRLVVRGCMALQGFEMDA--PRLNYFQC-------------SGIRDFD------EAFVY 214
           V+RL V  C  +Q  ++D+     N + C             SG+ +F       +AF +
Sbjct: 172 VKRL-VSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEF 230

Query: 215 RPD-HFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFG 273
           R     CC        N +S  +L+TL  S + + D  F    S+F  LE L L  S   
Sbjct: 231 RGQFQPCC-------INISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILAL--SYCH 281

Query: 274 KLPS-SLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGN 332
            L S  +SS+ LKK  L     C     V+I +P L    +    G++ SF         
Sbjct: 282 MLESLRISSSHLKKFILC---GCESVTRVDIDTPCLSGLEFS---GDVISFSLNAPALSQ 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 82/362 (22%)

Query: 1   MEAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRW--MSHWLCFPVQEFDE-SWFKGR 57
           +E  DRIS+LPDD+   I+SLLP K+IARTS+LSK W  +S +    V  F    +F  R
Sbjct: 34  VEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHSR 93

Query: 58  RESCG-RDFHEYLRRSLARRDFD-NMQELKIITYSQIDDELKHLITRFVAKEILRGKLQK 115
           R++     F   +  SL  R  D ++  L++  +   D E + LI  ++   + R K+++
Sbjct: 94  RKNFDVSSFINAIDSSLRLRQKDVSLARLQLRLHLN-DIESESLIDSWIDAALER-KVKE 151

Query: 116 LDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-------------------- 155
           LDL++   +  S+ + Y LP  IFS+ +  V L++  C++                    
Sbjct: 152 LDLYL---LPRSIPEPYGLPAKIFSTTTITV-LSLEQCRLEICGDVDLPALRKLCLRKIL 207

Query: 156 ------------------------GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE 191
                                   G  +K  V GL        ++ RLVV  C  L+  E
Sbjct: 208 CDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLA-------NLHRLVVTCCYNLRRIE 260

Query: 192 MDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRT 251
           +DAP L YF     R      V+ P  F                 L  L+     + +  
Sbjct: 261 IDAPSLQYFMYDHQRSLLCDVVWTPGEF-----------------LRELILHDRHITNDL 303

Query: 252 FESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETF 311
            ++ +S   NLE L++ S+   ++   +S   LK+L+L R+   + +  ++I +PNL++F
Sbjct: 304 LQNLVSGVPNLERLEIDSTRLQRI--EISHHQLKRLEL-RLSEWQREAKLKIDAPNLQSF 360

Query: 312 VY 313
            Y
Sbjct: 361 TY 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 82/362 (22%)

Query: 1   MEAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRW--MSHWLCFPVQEFDE-SWFKGR 57
           +E  DRIS+LPDD+   I+SLLP K+IARTS+LSK W  +S +    V  F    +F  R
Sbjct: 2   VEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHSR 61

Query: 58  RESCG-RDFHEYLRRSLARRDFD-NMQELKIITYSQIDDELKHLITRFVAKEILRGKLQK 115
           R++     F   +  SL  R  D ++  L++  +   D E + LI  ++   + R K+++
Sbjct: 62  RKNFDVSSFINAIDSSLRLRQKDVSLARLQLRLHLN-DIESESLIDSWIDAALER-KVKE 119

Query: 116 LDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-------------------- 155
           LDL++   +  S+ + Y LP  IFS+ +  V L++  C++                    
Sbjct: 120 LDLYL---LPRSIPEPYGLPAKIFSTTTITV-LSLEQCRLEICGDVDLPALRKLCLRKIL 175

Query: 156 ------------------------GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE 191
                                   G  +K  V GL        ++ RLVV  C  L+  E
Sbjct: 176 CDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLA-------NLHRLVVTCCYNLRRIE 228

Query: 192 MDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRT 251
           +DAP L YF     R      V+ P  F                 L  L+     + +  
Sbjct: 229 IDAPSLQYFMYDHQRSLLCDVVWTPGEF-----------------LRELILHDRHITNDL 271

Query: 252 FESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETF 311
            ++ +S   NLE L++ S+   ++   +S   LK+L+L R+   + +  ++I +PNL++F
Sbjct: 272 LQNLVSGVPNLERLEIDSTRLQRI--EISHHQLKRLEL-RLSEWQREAKLKIDAPNLQSF 328

Query: 312 VY 313
            Y
Sbjct: 329 TY 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 162/360 (45%), Gaps = 56/360 (15%)

Query: 4   IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGR 63
           +D IS LPD +  HI+S L +K I +T+ILSKRW+  WL FP  EFD+++F    +   +
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 64  DFH--EYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVR 121
            FH   ++ ++L  +    +++ K+  ++   +    ++       +L   +Q+L++ V 
Sbjct: 61  RFHLINFVEQTL--KQLKCLRKFKL--HTDFPEPNSMVVVDRWIDYVLESGVQELEIVVT 116

Query: 122 DHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCK----IGAYQKNTVMGLTLSNFF--NPS 175
              G      Y LP+ +F++ S  V LT+  CK    +  Y+  ++  ++L   F  + +
Sbjct: 117 VENGK----RYNLPQRVFANQSLTV-LTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDET 171

Query: 176 VRRLVVRGCMALQGFEMDA---------------PRLNYFQCSGIRDFD------EAFVY 214
           V+RL V  C  +Q  ++D+                 +     SG+ +F       +AF +
Sbjct: 172 VKRL-VSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEF 230

Query: 215 RPD-HFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFG 273
           R     CC        N +S  +L+TL  S + + D  F    S+F  LE L L  S   
Sbjct: 231 RGQFQPCC-------INISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILAL--SYCH 281

Query: 274 KLPS-SLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGN 332
            L S  +SS+ LKK  L     C     V+I +P L    +    G++ SF         
Sbjct: 282 MLESLRISSSHLKKFILC---GCESVTRVDIDAPCLSGLEFS---GDVISFSLNAPALSQ 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 152/351 (43%), Gaps = 57/351 (16%)

Query: 3   AIDRISFLPDDLTHHIMS-LLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGR---- 57
           ++DRIS  PD + HHI+S L  + D  RTS+LSKRW   W  + V  FDE  F  +    
Sbjct: 158 SVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAKIGHE 217

Query: 58  -RESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHL--ITRFVAKEILRGKLQ 114
              + G  F +Y+  SL   +  N+Q  K++ +    D L+    +  ++   I R  ++
Sbjct: 218 DSSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLELWLNIAIYRN-IK 276

Query: 115 KLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNP 174
           +LDLHV   + N  C  Y LP+ +FSS + L  + +  CK+G          T +N   P
Sbjct: 277 ELDLHV--GIKNGEC--YTLPQTVFSSKT-LTGIRLSGCKLG----------TCNNIKLP 321

Query: 175 SVRRLVVRGCMALQGFEMD-------APRLNYFQCSGIRDFDEAFVYRPD----HFCCRF 223
            +++L +R    ++ F  +          L   +CSG++    + + R      H C + 
Sbjct: 322 YLQKLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIHHCIQL 381

Query: 224 LEFKVANEN-------------------SMSSLETLVFSFMVLNDRTFESALSKFSNLET 264
            + +++  N                     +SL+ L      +     E+  S F  LE 
Sbjct: 382 KKVEISAPNLDTFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQFSNFPLLEK 441

Query: 265 LKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKA 315
           L L  S        +S+  L+K  L   + C+  G V + +PNL +F  K 
Sbjct: 442 LDLSMSNNKSRFIIISNPHLEKFTL---KGCKKLGIVLVEAPNLLSFECKG 489

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124628|ref|XP_002319379.1| f-box family protein [Populus trichocarpa] gi|222857755|gb|EEE95302.1| f-box family protein [Populus trichocarpa]

 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 150/340 (44%), Gaps = 58/340 (17%)

Query: 1   MEAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGR-RE 59
           ++ +D IS LPD +  HIMS LP KD AR SILSKR+ S W  FP+   DE+   G   E
Sbjct: 16  IQEVDLISELPDPIIQHIMSSLPYKDAARMSILSKRFASAWTSFPIIFLDETLNMGSCLE 75

Query: 60  SCGRD----FHEYLRRSLARRDFD-NMQELKII-----TYSQIDDELKHLITRFVAKEIL 109
             G+     F  Y+   L+RR  D ++++         +  Q +  +++ I   +   + 
Sbjct: 76  LTGKQKLNSFLSYVGAFLSRRRLDVSLEKFSFCFCLNNSSEQPNGGIENAICYAIENNV- 134

Query: 110 RGKLQKLDLHVRDHVGNSL--CDHYALPRVIFSSGSFLV------------SLTIRHCKI 155
               ++L+L   D VG S     HY+LP  + S+ S +V            +L +    I
Sbjct: 135 ----KELEL---DFVGKSFKCMAHYSLPMKVLSAQSVMVLSLKGFMLEPPQNLVLDFPFI 187

Query: 156 GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYR 215
              +     G+   +  + +++ +V+  C  L+  E+DA  L  F   G  +   +    
Sbjct: 188 KELRLEKCKGMQTLSVSSQTLKIVVLESCQRLEKVEIDASNLESFSFGGGANSSCSV--- 244

Query: 216 PDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKL 275
            D   C+             SLE L      + D   +  +++F  LE  K+   V  +L
Sbjct: 245 -DITACK-------------SLEYLSLKNAEITDEWIKHEVAQFLRLEVFKV---VGCRL 287

Query: 276 PSS--LSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVY 313
             +  +S+A    LK V + +C     +EI+S +L TFVY
Sbjct: 288 LENFHVSNA---NLKTVELSDCSNLQKIEIYSRSLNTFVY 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513749|ref|XP_003627163.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355521185|gb|AET01639.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 164/421 (38%), Gaps = 64/421 (15%)

Query: 5   DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKG--RRESCG 62
           DR+S LP  + H I+S LP KD ARTS+LSK W+  W  FP+  F ++   G       G
Sbjct: 6   DRLSNLPKVILHSILSRLPEKDAARTSVLSKSWLETWHTFPILSFSDAKITGLFPPSDIG 65

Query: 63  RDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEI-LRGKLQKLDLHVR 121
           R     L     R+  + +  +KI      D+ L     + V   + LRG   +LDL + 
Sbjct: 66  RMLFPELMDDFVRKIENFIDYVKITLLRFYDNGLAINKFKLVVNNVELRGYNVELDLWL- 124

Query: 122 DHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVV 181
                                           K+ +     V+ L L N   P+    V+
Sbjct: 125 --------------------------------KLASESGVEVLQLCLPN--GPNHEYYVL 150

Query: 182 -RGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRP-DHFCCRFLEFKVANENSMSSLET 239
             G M                  GIR  D AF+ R    F  R L  K        ++E 
Sbjct: 151 PEGVMG-----------------GIR-VDTAFMNRSIKFFSLRILSLKHVLSRDEHAIEH 192

Query: 240 LVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDG 299
           L+    ++   T         N  T  LL S    +  SLS   L KLK V ++  +   
Sbjct: 193 LISCCPLIEHITLRDCSMLSPNGATNHLLESHTSGVIKSLSMDGLLKLKTVDVQGIQ--- 249

Query: 300 PVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLG-LRNKSLEELISACIL 358
            V I SP+LE   Y  G+ + A F        N+K L +    G + +K   EL      
Sbjct: 250 EVYIDSPSLEKLRYCPGYFD-APFKIDFDRCQNLKYLDLCLDSGIITDKWFLELFRKFRF 308

Query: 359 LENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQYVGQLENFPTLN 418
           LE+L L+ C + +  + I S+ LK L +  C +L    I AP LL   Y    ++ P ++
Sbjct: 309 LESLKLDDCTMAE-RINISSVQLKVLELSDCSNLKEVNIDAPNLLSCVYCSDGDSEPIIS 367

Query: 419 F 419
           F
Sbjct: 368 F 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694890|ref|NP_191452.2| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75244411|sp|Q8GXW6.1|FBL59_ARATH RecName: Full=F-box/LRR-repeat protein At3g58930 gi|26451056|dbj|BAC42633.1| unknown protein [Arabidopsis thaliana] gi|28951059|gb|AAO63453.1| At3g58930 [Arabidopsis thaliana] gi|332646330|gb|AEE79851.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 15/157 (9%)

Query: 4   IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWF------KGR 57
           +DR+S LPD +  HI+S LP K IA TS+LSK W++ W   P+ + D+S F      K  
Sbjct: 1   MDRVSNLPDGVRGHILSFLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEFLHPEEGKAE 60

Query: 58  RESCGRDFHEYLRRSLARRDFDNMQ--ELKIITYSQIDDELKHLITRFVAKEILRGKLQK 115
           R    + F +++ R LA +D   +    LK IT    D      + R++   + RG +  
Sbjct: 61  RLEIRQSFVDFVDRVLALQDDSPIDRFSLKCITGIHPDH-----VNRWICNVLQRG-VSD 114

Query: 116 LDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRH 152
           LDL +     ++  D   LP+ +F S + LV L IR+
Sbjct: 115 LDLFIDFSYEDTQEDEDMLPQEMFVSKT-LVKLKIRN 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7630088|emb|CAB88310.1| putative protein [Arabidopsis thaliana]

 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 15/157 (9%)

Query: 4   IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWF------KGR 57
           +DR+S LPD +  HI+S LP K IA TS+LSK W++ W   P+ + D+S F      K  
Sbjct: 1   MDRVSNLPDGVRGHILSFLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEFLHPEEGKAE 60

Query: 58  RESCGRDFHEYLRRSLARRDFDNMQ--ELKIITYSQIDDELKHLITRFVAKEILRGKLQK 115
           R    + F +++ R LA +D   +    LK IT    D      + R++   + RG +  
Sbjct: 61  RLEIRQSFVDFVDRVLALQDDSPIDRFSLKCITGIHPDH-----VNRWICNVLQRG-VSD 114

Query: 116 LDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRH 152
           LDL +     ++  D   LP+ +F S + LV L IR+
Sbjct: 115 LDLFIDFSYEDTQEDEDMLPQEMFVSKT-LVKLKIRN 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810265|emb|CAN71448.1| hypothetical protein VITISV_027852 [Vitis vinifera]

 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 118/268 (44%), Gaps = 62/268 (23%)

Query: 1   MEAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRW--MSHWLCFPVQEFDE-SWFKGR 57
           +E  DRIS+LPDD+   I+SLLP K+IARTS+LSK W  +S +    V  F    +F  R
Sbjct: 2   VEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHSR 61

Query: 58  RESCG-RDFHEYLRRSLARRDFD-NMQELKIITYSQIDDELKHLITRFVAKEILRGKLQK 115
           R++     F   +  SL  R  D ++  L++  +   D E + LI  ++   + R K+++
Sbjct: 62  RKNFDVSSFINAIDSSLRLRQKDVSLARLQLRLHLN-DIESESLIDSWIDAALER-KVKE 119

Query: 116 LDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-------------------- 155
           LDL++   +  S+ + Y LP  IFS+ +  V L++  C++                    
Sbjct: 120 LDLYL---LPRSIPEPYGLPAKIFSTTTITV-LSLEQCRLEICGDVDLPALRKLCLRKIL 175

Query: 156 ------------------------GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE 191
                                   G  +K  V GL        ++ RLVV  C  L+  E
Sbjct: 176 CDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLA-------NLHRLVVTCCYNLRRIE 228

Query: 192 MDAPRLNYFQCSGIRDFDEAFVYRPDHF 219
           +DAP L YF     R      V+ P  F
Sbjct: 229 IDAPSLQYFMYDHQRSLLCDVVWTPGEF 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
TAIR|locus:2099054	454	AT3G58880 "AT3G58880" [Arabido	0.253	0.242	0.352	4.9e-11
TAIR|locus:2099119	482	AT3G58930 "AT3G58930" [Arabido	0.331	0.298	0.322	2e-10
TAIR|locus:2081157	520	AT3G59200 "AT3G59200" [Arabido	0.382	0.319	0.302	2.3e-09
TAIR|locus:2125447	498	AT4G03220 "AT4G03220" [Arabido	0.476	0.415	0.266	2.8e-09
TAIR|locus:2162499	443	AT5G22670 "AT5G22670" [Arabido	0.274	0.268	0.362	6.1e-09
TAIR|locus:2161053	422	AT5G56420 "AT5G56420" [Arabido	0.179	0.184	0.378	1e-08
TAIR|locus:2081242	504	AT3G59240 "AT3G59240" [Arabido	0.322	0.277	0.305	2.4e-08
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.246	0.234	0.301	2.9e-08
TAIR|locus:2077695	491	AT3G59000 "AT3G59000" [Arabido	0.320	0.283	0.298	3.3e-08
TAIR|locus:2129266	434	AT4G13960 "AT4G13960" [Arabido	0.433	0.433	0.283	3.4e-08

TAIR|locus:2099054 AT3G58880 "AT3G58880" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
 Identities = 43/122 (35%), Positives = 67/122 (54%)

Query:     4 IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCF-PVQEFDESWF------KG 56
             +D +S LPDDL  HI+SLL  K+ A TSILSKRW  + + F P  EFD+S F      K 
Sbjct:     2 VDLVSSLPDDLLGHILSLLTTKEAALTSILSKRWR-YLIAFVPYLEFDDSAFLNPEEGKQ 60

Query:    57 RRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKL 116
              RE   + F +++ R LA      +++  +   + +D +L   + +++   + RG L  +
Sbjct:    61 TREGTRQSFIDFVDRVLALHGDSPIRKFSLKCKTGVDLDL---LNQWICNVLQRGVLL-I 116

Query:   117 DL 118
             DL
Sbjct:   117 DL 118

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099119 AT3G58930 "AT3G58930" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
 Identities = 50/155 (32%), Positives = 81/155 (52%)

Query:     4 IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWF------KGR 57
             +DR+S LPD +  HI+S LP K IA TS+LSK W++ W   P+ + D+S F      K  
Sbjct:     1 MDRVSNLPDGVRGHILSFLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEFLHPEEGKAE 60

Query:    58 RESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLD 117
             R    + F +++ R LA +D   +    +   + I  +  H + R++   + RG +  LD
Sbjct:    61 RLEIRQSFVDFVDRVLALQDDSPIDRFSLKCITGIHPD--H-VNRWICNVLQRG-VSDLD 116

Query:   118 LHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRH 152
             L +     ++  D   LP+ +F S + LV L IR+
Sbjct:   117 LFIDFSYEDTQEDEDMLPQEMFVSKT-LVKLKIRN 150

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081157 AT3G59200 "AT3G59200" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
 Identities = 58/192 (30%), Positives = 96/192 (50%)

Query:     5 DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFK-GRRES--- 60
             DRIS LP+ +  HI+S LP K+ A TS+LSK+W   +      +FD+S ++ G+ +S   
Sbjct:     7 DRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKSDVE 66

Query:    61 CGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHV 120
               R F E++ R LA +   ++ +  +   S  D +L   +T ++   + RG + +LDL +
Sbjct:    67 LSRSFMEFVDRVLALQGNGSVNKFSL-ECSNYDVDLAR-VTGWILNVLGRG-VSELDLSI 123

Query:   121 RDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLV 180
              +         Y LP  IF      VS T+   K+G     T+  L   + F P ++ L 
Sbjct:   124 LE---------YPLPSEIF------VSKTLVRLKLGPANDLTLT-LDRKDVFLPKLKTLY 167

Query:   181 VRGCMALQ--GF 190
             +  C+ +Q  GF
Sbjct:   168 I-DCVDVQERGF 178

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125447 AT4G03220 "AT4G03220" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
 Identities = 66/248 (26%), Positives = 114/248 (45%)

Query:     4 IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDE-SWFKGRRESCG 62
             +DRIS LPD L H I+ LLP+K  A+ S+LSKRW S +L  P  +F   +  K  +    
Sbjct:    23 VDRISNLPDSLNHQILLLLPLKSAAQASLLSKRWRSLFLSLPDLDFTSINDLKNPKSFSS 82

Query:    63 RDFHEYLRRSL-ARRDFDNMQELKI---ITYSQIDDELKHLITRFVAKEILRGKLQKLDL 118
                ++ L  SL + RD +N++ L+    +T++ ++  ++  +T          ++Q LD+
Sbjct:    83 NSIYKVL--SLRSHRDSNNLRSLRFRVPVTFTSLNSLIRLAVTH---------QVQDLDI 131

Query:   119 HVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAY--QKNTVMGLTLSNFFNPSV 176
              V         D++  PR I +S + L +LT++   +G      ++  G       + S+
Sbjct:   132 EVTTK------DYFNFPRWIVTSQN-LRALTLKSANLGFRLPPSSSARG-GFQKLTSLSL 183

Query:   177 RRLVVRGCMALQGFEMDA--PRLNYFQ---CSGIRDFDEAFVYRPDHFCCRFL-EFKVAN 230
              R+++     L  F  D   P L       C G+++   +         CR L EF + N
Sbjct:   184 SRVILHNQPCLSDFFTDPSFPLLEKLTLECCFGLKELKVS---------CRLLQEFSLKN 234

Query:   231 ENSMSSLE 238
                +  LE
Sbjct:   235 SLQLEGLE 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
 Identities = 46/127 (36%), Positives = 66/127 (51%)

Query:     5 DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRD 64
             D IS LPDDL   I+S LP K   RTS+LSKRW    L  P+ EF+ S F G  E   R 
Sbjct:    11 DSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLLEFNVSEFHGYYEFA-RV 69

Query:    65 FHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHV 124
              H +L  S   R+   + +LK+    +  D  +  +T+++   + R K+Q LD+    ++
Sbjct:    70 VHGFLDTS---RE-TCIHKLKLAFEKKQHD--RSYLTQWIHNAVKR-KVQHLDIGRWSYL 122

Query:   125 GNSLCDH 131
             G  L  H
Sbjct:   123 GQELIPH 129

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161053 AT5G56420 "AT5G56420" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 31/82 (37%), Positives = 43/82 (52%)

Query:     5 DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRD 64
             DR+S LPDD    I+S LP KD+  TS+LSKRW   W   P   +D    +    +C R 
Sbjct:     6 DRLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYD---LRLHDNTCPR- 61

Query:    65 FHEYLRRSLARRDFDNMQELKI 86
             F +++ RSL       ++ L I
Sbjct:    62 FSQFVDRSLLLHKAPTLESLNI 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081242 AT3G59240 "AT3G59240" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
 Identities = 48/157 (30%), Positives = 78/157 (49%)

Query:     5 DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDES-WFKGR---RES 60
             D IS LP+ L  H++S +P K+ A TS+LS++W   +   P+ +FD+S W +        
Sbjct:     8 DIISDLPEALICHLLSFVPTKEAALTSLLSEKWRYLFAFAPILDFDDSVWMQSPLVYMNE 67

Query:    61 CGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHV 120
               R F +++ R L  +    +    +   + ID E    I R+++  I RG +  LDL  
Sbjct:    68 VHRKFMDFVDRVLGLQGNSTLVRFSLNCRNGIDREC---IFRWISNVIERG-VSDLDL-- 121

Query:   121 RDHVGNSLCDHYALPRVIFSSGSFLVSLTIR--HCKI 155
                 G +   + ++P  +F S S LV L IR  +C I
Sbjct:   122 ----GGNFVSNRSMPSSVFVSKS-LVKLRIRTENCTI 153

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
 Identities = 35/116 (30%), Positives = 64/116 (55%)

Query:     2 EAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWF----KGR 57
             E +D  S LPD++  HI+S LP K+ A TS+L+K+W   +   P  +F++S F    +G+
Sbjct:     4 EKMDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGK 63

Query:    58 RESCG--RDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRG 111
             RE  G  R F +++ R LA +    +++  +   + +D +    + R++   + RG
Sbjct:    64 REKDGILRSFMDFVDRVLALQGASPIKKFSLNVKTGVDPDR---VDRWICNVLQRG 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077695 AT3G59000 "AT3G59000" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
 Identities = 46/154 (29%), Positives = 80/154 (51%)

Query:     4 IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCF-PVQEFDESWF------KG 56
             +DR+  LPD+L  HI+S L  K+ A TS+LSKRW  + + F P   FD+  F      K 
Sbjct:     1 MDRVGSLPDELLSHILSFLTTKEAALTSLLSKRWR-YLIAFVPNLAFDDIVFLHPEEGKP 59

Query:    57 RRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKL 116
              R+   + F +++ R LA +    +++  +     +D +    +  +++  + RG + +L
Sbjct:    60 ERDEIRQSFMDFVDRVLALQAESPIKKFSLKCRIGVDSDR---VDGWISNVLNRG-VSEL 115

Query:   117 DLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTI 150
             DL +   +G ++ D Y L    F+S + LV L I
Sbjct:   116 DLLII--LGMTMEDSYRLSPKGFASKT-LVKLEI 146

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129266 AT4G13960 "AT4G13960" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
 Identities = 59/208 (28%), Positives = 100/208 (48%)

Query:     4 IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWF----KGR-- 57
             +D +S LPD++ +HI+S L  K+ A TSILSKRW + +   P  + D+S F    +G+  
Sbjct:     1 MDHVSSLPDEVLYHILSFLTTKEAALTSILSKRWRNLFTFVPNLDIDDSVFLHPQEGKED 60

Query:    58 RESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLD 117
             R    + F +++ R LA +    +++L +   +  D    H +  +++  + RG + +LD
Sbjct:    61 RYEIQKSFMKFVDRVLALQGNSPIKKLSLKLRTGFDS---HRVDGWISNALARG-VTELD 116

Query:   118 LHVRDHVG----NSL-CDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFF 172
             L +  ++     NS+  D  A   +       LV  ++R C       N   G    N  
Sbjct:   117 LLIILNLVTLKLNSVRVDWLAAGDIFLPMLKTLVLHSVRLCV-----DNVNWGGKDVNVS 171

Query:   173 NPSVRRLVVRGCMALQGFEMDAPRLNYF 200
             N S++ L V   + L  F +D P L YF
Sbjct:   172 NASLKILTVNYNICLGTFSVDTPSLVYF 199

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034157001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (520 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	434
pfam00646	48	pfam00646, F-box, F-box domain	2e-04
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.002
pfam12937	47	pfam12937, F-box-like, F-box-like	0.002

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 5  DRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHW 41
            +  LPDDL   I+S L  KD+ R S++SKRW S  
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLV 37

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 10 LPDDLTHHIMSLLPMKDIARTSILSKRW 37
          LPD++   I+S L  KD+ R   +S++W
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKW 28

Length = 41

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 7  ISFLPDDLTHHIMSLLPMKDIARTSILSKRW 37
          +S LPD++   I S L  +D+ R +++ +RW
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRW 31

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.75
KOG4341	483	consensus F-box protein containing LRR [General fu	99.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.29
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.2
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.17
KOG4341	483	consensus F-box protein containing LRR [General fu	99.14
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.13
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.99
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.91
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.88
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.76
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.61
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.56
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.46
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.37
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.32
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.25
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.18
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.14
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.1
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.03
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.87
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.57
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.54
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.52
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.45
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.41
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.2
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.9
PRK15386	426	type III secretion protein GogB; Provisional	96.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.67
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.63
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.53
PRK15386	426	type III secretion protein GogB; Provisional	96.32
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.58
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.53
PLN03150	623	hypothetical protein; Provisional	95.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.57
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.52
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.44
KOG4237	498	consensus Extracellular matrix protein slit, conta	94.41
PLN03150	623	hypothetical protein; Provisional	94.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.34
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	94.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	92.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	92.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.38
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	92.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.86
KOG2123	388	consensus Uncharacterized conserved protein [Funct	90.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.37
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	89.21
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	88.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	88.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	87.71
PF13013	109	F-box-like_2: F-box-like domain	87.13
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	83.1
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	82.71
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.11
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	81.07

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.1e-19  Score=160.96  Aligned_cols=280  Identities=19%  Similarity=0.190  Sum_probs=157.4

Q ss_pred             CCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhc------cccCCeeEEecccccCCcccchhhHHHHHHHHHhccCCCc
Q 046380            7 ISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSH------WLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDN   80 (434)
Q Consensus         7 is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~   80 (434)
                      ...|||||+..||+.|+.+|+++++.|||||.++      |..   ++.......+          +...++++  +|  
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p----------~~l~~l~~--rg--  160 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP----------DVLGRLLS--RG--  160 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh----------hHHHHHHh--CC--
Confidence            5689999999999999999999999999999865      433   3332222211          22222322  12  


Q ss_pred             ccceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccc
Q 046380           81 MQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQK  160 (434)
Q Consensus        81 l~~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~  160 (434)
                      +..++   +... ..+...+..... . ++.+++.++++...      .....+.--+..|.+ |+.|.|.|..++-   
T Consensus       161 V~v~R---lar~-~~~~prlae~~~-~-frsRlq~lDLS~s~------it~stl~~iLs~C~k-Lk~lSlEg~~LdD---  224 (419)
T KOG2120|consen  161 VIVFR---LARS-FMDQPRLAEHFS-P-FRSRLQHLDLSNSV------ITVSTLHGILSQCSK-LKNLSLEGLRLDD---  224 (419)
T ss_pred             eEEEE---cchh-hhcCchhhhhhh-h-hhhhhHHhhcchhh------eeHHHHHHHHHHHHh-hhhccccccccCc---
Confidence            33333   3311 122222222222 2 44678888887543      112223333445666 8888888877732   


Q ss_pred             ccccccccccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCcee
Q 046380          161 NTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLE  238 (434)
Q Consensus       161 ~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~  238 (434)
                          .+......-.+|+.|+|+.|     ..+ . +++-++.+|..|.+|+++.|......      ....+..-.++|+
T Consensus       225 ----~I~~~iAkN~~L~~lnlsm~-----sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~------Vtv~V~hise~l~  289 (419)
T KOG2120|consen  225 ----PIVNTIAKNSNLVRLNLSMC-----SGFTENALQLLLSSCSRLDELNLSWCFLFTEK------VTVAVAHISETLT  289 (419)
T ss_pred             ----HHHHHHhccccceeeccccc-----cccchhHHHHHHHhhhhHhhcCchHhhccchh------hhHHHhhhchhhh
Confidence                01122345667888888876     444 3 77777888888888888888763221      1122333456677


Q ss_pred             EEEEEeEEeC--chhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce---e-ecCCcccEEE
Q 046380          239 TLVFSFMVLN--DRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV---E-IHSPNLETFV  312 (434)
Q Consensus       239 ~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~---~-~~~p~L~~L~  312 (434)
                      .|+++|+..+  +..+.-+...+|+|..|+++++.                         .+..-   . ++.+.|++|.
T Consensus       290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v-------------------------~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV-------------------------MLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc-------------------------ccCchHHHHHHhcchheeee
Confidence            7777665422  22223233555555555555442                         22111   1 1355555555


Q ss_pred             eccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccce
Q 046380          313 YKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLEN  361 (434)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~  361 (434)
                      ++.+|.-+......+...++|++|++.|+  +++..++-+.+.+|+|+-
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence            55544332333334556677888888887  667677777777777653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.74  E-value=1.3e-19  Score=169.11  Aligned_cols=347  Identities=14%  Similarity=0.141  Sum_probs=166.5

Q ss_pred             CCCHHHHHHHHcCCChHHHHHHhhhhhhhhhc------cccCCeeEEecccccCCcccchhhHHHHHHHHHhccCCCccc
Q 046380            9 FLPDDLTHHIMSLLPMKDIARTSILSKRWMSH------WLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQ   82 (434)
Q Consensus         9 ~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~   82 (434)
                      .||+|++.+|||+|+.+.+.|++++|+-|+-+      |+.+.-.+|..+.-           -..|.....+.+ ..++
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~-----------g~VV~~~~~Rcg-g~lk  141 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD-----------GGVVENMISRCG-GFLK  141 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC-----------CcceehHhhhhc-cccc
Confidence            59999999999999999999999999999864      33322111111000           012222333322 2345


Q ss_pred             ceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccc
Q 046380           83 ELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKN  161 (434)
Q Consensus        83 ~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~  161 (434)
                      ++.   ++.........+.....   ..++++.|.+..|.     ..++..+-...-.|.. |++|.|..|.. .-    
T Consensus       142 ~LS---lrG~r~v~~sslrt~~~---~CpnIehL~l~gc~-----~iTd~s~~sla~~C~~-l~~l~L~~c~~iT~----  205 (483)
T KOG4341|consen  142 ELS---LRGCRAVGDSSLRTFAS---NCPNIEHLALYGCK-----KITDSSLLSLARYCRK-LRHLNLHSCSSITD----  205 (483)
T ss_pred             ccc---ccccccCCcchhhHHhh---hCCchhhhhhhcce-----eccHHHHHHHHHhcch-hhhhhhcccchhHH----
Confidence            555   43222222222222222   22566666555544     1111111111122344 55555555532 10    


Q ss_pred             cccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEE
Q 046380          162 TVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLV  241 (434)
Q Consensus       162 ~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~  241 (434)
                        +.|.....+||+|++|++++|.-.++   ++++.+..+|..++++.+.+|...+.+      .+..+.-.++-+..++
T Consensus       206 --~~Lk~la~gC~kL~~lNlSwc~qi~~---~gv~~~~rG~~~l~~~~~kGC~e~~le------~l~~~~~~~~~i~~ln  274 (483)
T KOG4341|consen  206 --VSLKYLAEGCRKLKYLNLSWCPQISG---NGVQALQRGCKELEKLSLKGCLELELE------ALLKAAAYCLEILKLN  274 (483)
T ss_pred             --HHHHHHHHhhhhHHHhhhccCchhhc---CcchHHhccchhhhhhhhcccccccHH------HHHHHhccChHhhccc
Confidence              01111234556666666665421111   255555555655555555555443321      1222222333344444


Q ss_pred             EEeEE-eCchhHHHHhccCCCCcEEEeecccc-ccCCCCcchhhccCccEEEeecCCCCcceee-----cCCcccEEEec
Q 046380          242 FSFMV-LNDRTFESALSKFSNLETLKLLSSVF-GKLPSSLSSAILKKLKLVRMENCRFDGPVEI-----HSPNLETFVYK  314 (434)
Q Consensus       242 l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-----~~p~L~~L~l~  314 (434)
                      +..+. ++|.....+-.++..|+.|+.+++.- .+.+.+-......+|+.|.+..|..+....+     +++.||.+++.
T Consensus       275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e  354 (483)
T KOG4341|consen  275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE  354 (483)
T ss_pred             hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence            33332 34444433445566666666665532 2222211223455666666666655443322     46666666665


Q ss_pred             cccCcccc-eeecCCCCCCccEEEEcCccCCcHHHHHHHHh---cCCccceEEeeccccccc-cccc--cccccceeEec
Q 046380          315 AGHGEIAS-FHFGGRGFGNIKTLAVNGFLGLRNKSLEELIS---ACILLENLYLNSCAIPKG-HLEI--YSLTLKTLVVH  387 (434)
Q Consensus       315 ~~~~~~~~-~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~---~~p~Le~L~l~~~~~~~~-~~~~--~~~~L~~L~l~  387 (434)
                      ......++ +......|+.|++|.++.|+-++++++..+..   ....|+.+.+++|+.+.+ ..+.  .+..||.+++.
T Consensus       355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI  434 (483)
T ss_pred             ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence            54322122 32334556666666666666666665444432   344566666666665331 1121  23456666666


Q ss_pred             cCCccce
Q 046380          388 GCDHLHF  394 (434)
Q Consensus       388 ~c~~l~~  394 (434)
                      +|..+..
T Consensus       435 ~~q~vtk  441 (483)
T KOG4341|consen  435 DCQDVTK  441 (483)
T ss_pred             chhhhhh
Confidence            6665553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.29  E-value=5.4e-12  Score=139.26  Aligned_cols=251  Identities=16%  Similarity=0.130  Sum_probs=126.6

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccc-cCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIF-SSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~-~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      ++++.|+++.+.       ....+|..++ .+.+ |++|+|++|.+ +.          .....+++|++|+|++     
T Consensus        93 ~~L~~L~Ls~n~-------~~~~ip~~~~~~l~~-L~~L~Ls~n~l~~~----------~p~~~l~~L~~L~Ls~-----  149 (968)
T PLN00113         93 PYIQTINLSNNQ-------LSGPIPDDIFTTSSS-LRYLNLSNNNFTGS----------IPRGSIPNLETLDLSN-----  149 (968)
T ss_pred             CCCCEEECCCCc-------cCCcCChHHhccCCC-CCEEECcCCccccc----------cCccccCCCCEEECcC-----
Confidence            678888887654       2335677766 4444 88888888776 22          1234577777777777     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCCCCc-c----cccc-----------cccceeeccCCceeEEEEEeEEeCchh
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHF-C----CRFL-----------EFKVANENSMSSLETLVFSFMVLNDRT  251 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~-~----~~~l-----------~~~~~~~~~~p~L~~L~l~~~~~~~~~  251 (434)
                       +.+ ..+...+.++++|++|++++|...... .    .+.+           .........+++|+.|+++++...+. 
T Consensus       150 -n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-  227 (968)
T PLN00113        150 -NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-  227 (968)
T ss_pred             -CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc-
Confidence             444 244444566777777777777542110 0    0000           00111112334455554444332211 


Q ss_pred             HHHHhccCCCCcEEEeecccccc-CCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecC
Q 046380          252 FESALSKFSNLETLKLLSSVFGK-LPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGG  327 (434)
Q Consensus       252 ~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~  327 (434)
                      ....+..+++|+.|++++|.+.. +|..  ...+++|++|.++++.....+  .+ .+++|++|+++.+... ..+....
T Consensus       228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~  304 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLVYNNLTGPIPSS--LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELV  304 (968)
T ss_pred             CChhHhcCCCCCEEECcCceeccccChh--HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhH
Confidence            11123455555555555554432 2321  233455555555554321111  12 3566666666554321 0111223


Q ss_pred             CCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCCc
Q 046380          328 RGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCDH  391 (434)
Q Consensus       328 ~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~  391 (434)
                      ..+++|++|.+.++ .+... +...+..+|+|+.|++++|.+......  ....+|+.|++++|..
T Consensus       305 ~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l  368 (968)
T PLN00113        305 IQLQNLEILHLFSN-NFTGK-IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL  368 (968)
T ss_pred             cCCCCCcEEECCCC-ccCCc-CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence            45667777777666 22222 223345677777777777776221111  1234677777777743

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.20  E-value=4.5e-11  Score=132.02  Aligned_cols=132  Identities=17%  Similarity=0.212  Sum_probs=72.8

Q ss_pred             ccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecccccc-CCCCcchhhccCccEEEeecCCCCcce--ee-cCCc
Q 046380          232 NSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGK-LPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPN  307 (434)
Q Consensus       232 ~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~  307 (434)
                      ..+++|++|+++++...+. ....+..+++|+.|++++|.+.. +|..  ...+++|++|++++|.....+  .+ .+++
T Consensus       233 ~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  309 (968)
T PLN00113        233 GGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFLYQNKLSGPIPPS--IFSLQKLISLDLSDNSLSGEIPELVIQLQN  309 (968)
T ss_pred             hcCCCCCEEECcCceeccc-cChhHhCCCCCCEEECcCCeeeccCchh--HhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence            4567888888876654432 22245677888888888776653 4432  234667777777776422211  12 4677


Q ss_pred             ccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          308 LETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       308 L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      |+.|++.++.... ........+++|++|.++++ .+... +...+..+++|+.|++++|.+
T Consensus       310 L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~~~~L~~L~Ls~n~l  368 (968)
T PLN00113        310 LEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSN-KFSGE-IPKNLGKHNNLTVLDLSTNNL  368 (968)
T ss_pred             CcEEECCCCccCC-cCChhHhcCCCCCEEECcCC-CCcCc-CChHHhCCCCCcEEECCCCee
Confidence            7777776654220 11122345566666666665 22211 222334556666666665554

>PLN03210 Resistant to P

Probab=99.17  E-value=1.5e-10  Score=128.96  Aligned_cols=106  Identities=22%  Similarity=0.233  Sum_probs=52.8

Q ss_pred             hccCccEEEeecCCCCcceee--cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccc
Q 046380          283 ILKKLKLVRMENCRFDGPVEI--HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLE  360 (434)
Q Consensus       283 ~~~~L~~L~l~~c~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le  360 (434)
                      .+++|+.|++++|..+..+..  .+++|++|.++++..- ..+   .....+|+.|.++++ ++.  .++.-+..+++|+
T Consensus       800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L-~~~---p~~~~nL~~L~Ls~n-~i~--~iP~si~~l~~L~  872 (1153)
T PLN03210        800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL-RTF---PDISTNISDLNLSRT-GIE--EVPWWIEKFSNLS  872 (1153)
T ss_pred             CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc-ccc---cccccccCEeECCCC-CCc--cChHHHhcCCCCC
Confidence            344555555555554443322  3455555555543210 001   111245666666554 222  2333345677777


Q ss_pred             eEEeeccccccccccc---cccccceeEeccCCccceee
Q 046380          361 NLYLNSCAIPKGHLEI---YSLTLKTLVVHGCDHLHFAE  396 (434)
Q Consensus       361 ~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~~  396 (434)
                      .|++++|+... .+..   ...+|+.+++++|..++.+.
T Consensus       873 ~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        873 FLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             EEECCCCCCcC-ccCcccccccCCCeeecCCCccccccc
Confidence            77777776522 2221   12466777777777776543

syringae 6; Provisional

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.14  E-value=4.1e-13  Score=126.03  Aligned_cols=277  Identities=16%  Similarity=0.145  Sum_probs=149.6

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      ..+++|.+.++.     ......+-.....|.+ +++|.+.+|.. +.      ..+......|++|++|++..|     
T Consensus       138 g~lk~LSlrG~r-----~v~~sslrt~~~~Cpn-IehL~l~gc~~iTd------~s~~sla~~C~~l~~l~L~~c-----  200 (483)
T KOG4341|consen  138 GFLKELSLRGCR-----AVGDSSLRTFASNCPN-IEHLALYGCKKITD------SSLLSLARYCRKLRHLNLHSC-----  200 (483)
T ss_pred             cccccccccccc-----cCCcchhhHHhhhCCc-hhhhhhhcceeccH------HHHHHHHHhcchhhhhhhccc-----
Confidence            455555555555     2222333333334444 55555555543 11      001122335555666666554     


Q ss_pred             Eee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeC-chhHHHHhccCCCCcEEE
Q 046380          190 FEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLN-DRTFESALSKFSNLETLK  266 (434)
Q Consensus       190 ~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~  266 (434)
                      ..+ + .++.+..+||+|+.|+++.|......      .+......+..++.+..+||... ...+...-.+++-+.+++
T Consensus       201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln  274 (483)
T KOG4341|consen  201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGN------GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN  274 (483)
T ss_pred             chhHHHHHHHHHHhhhhHHHhhhccCchhhcC------cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence            333 3 45555555666666666555543221      12222223333444444443321 122222223444444555


Q ss_pred             eeccc-cccCCCCcchhhccCccEEEeecCCCCcceee-----cCCcccEEEecccc-CcccceeecCCCCCCccEEEEc
Q 046380          267 LLSSV-FGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-----HSPNLETFVYKAGH-GEIASFHFGGRGFGNIKTLAVN  339 (434)
Q Consensus       267 l~~~~-~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-----~~p~L~~L~l~~~~-~~~~~~~~~~~~~~~Lk~L~l~  339 (434)
                      +..|. +++...+.....+..|+.|..++|.++....+     ++++|+.+.+.+++ .+..++......++.|+.+.+.
T Consensus       275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e  354 (483)
T KOG4341|consen  275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE  354 (483)
T ss_pred             hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence            44441 22222222233466777788888776654433     47888888877654 4444444455677888888888


Q ss_pred             CccCCcHHHHHHHHhcCCccceEEeecccccccc-cc------ccccccceeEeccCCccceee----EecCceEEEEEe
Q 046380          340 GFLGLRNKSLEELISACILLENLYLNSCAIPKGH-LE------IYSLTLKTLVVHGCDHLHFAE----IQAPQLLYFQYV  408 (434)
Q Consensus       340 ~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~-~~------~~~~~L~~L~l~~c~~l~~~~----i~~~~l~~~~~~  408 (434)
                      ++.-..+..+..+..+||.|+.|.+++|..+++. +.      .....++.+++++|+.+.+..    -.++++++.+.+
T Consensus       355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI  434 (483)
T ss_pred             ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence            8844555568888888888888888888764422 11      223478888999999887433    346788887776


Q ss_pred             ee
Q 046380          409 GQ  410 (434)
Q Consensus       409 ~~  410 (434)
                      ++
T Consensus       435 ~~  436 (483)
T KOG4341|consen  435 DC  436 (483)
T ss_pred             ch
Confidence            53

>PLN03210 Resistant to P

Probab=99.13  E-value=5.3e-10  Score=124.66  Aligned_cols=229  Identities=20%  Similarity=0.162  Sum_probs=139.2

Q ss_pred             ccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeecc
Q 046380          133 ALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAF  212 (434)
Q Consensus       133 ~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~  212 (434)
                      .+|..+.....+|+.|++.++.+..        + |......+|++|+|.+      ..+..+..-+..+++|+.|++++
T Consensus       579 ~lp~~~~~lp~~Lr~L~~~~~~l~~--------l-P~~f~~~~L~~L~L~~------s~l~~L~~~~~~l~~Lk~L~Ls~  643 (1153)
T PLN03210        579 HLPEGFDYLPPKLRLLRWDKYPLRC--------M-PSNFRPENLVKLQMQG------SKLEKLWDGVHSLTGLRNIDLRG  643 (1153)
T ss_pred             ecCcchhhcCcccEEEEecCCCCCC--------C-CCcCCccCCcEEECcC------ccccccccccccCCCCCEEECCC
Confidence            3444433333337777777766522        1 4445677888888887      33312222245688899999887


Q ss_pred             ccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc-ccccCCCCcchhhccCccEEE
Q 046380          213 VYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS-VFGKLPSSLSSAILKKLKLVR  291 (434)
Q Consensus       213 ~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~~L~~L~  291 (434)
                      +....        .++. ...+++|+.|+++++.... .+...+..+++|+.|++++| .++.+|...   .+++|++|+
T Consensus       644 ~~~l~--------~ip~-ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~  710 (1153)
T PLN03210        644 SKNLK--------EIPD-LSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLN  710 (1153)
T ss_pred             CCCcC--------cCCc-cccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEe
Confidence            75421        1121 2357889999998754221 12234577889999999987 566677532   577899999


Q ss_pred             eecCCCCcceeecCCcccEEEeccccCcccceee------------------------------cCCCCCCccEEEEcCc
Q 046380          292 MENCRFDGPVEIHSPNLETFVYKAGHGEIASFHF------------------------------GGRGFGNIKTLAVNGF  341 (434)
Q Consensus       292 l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~------------------------------~~~~~~~Lk~L~l~~~  341 (434)
                      +++|..+..+.-..++|+.|.+.++...  .++.                              ....+++|++|.++++
T Consensus       711 Lsgc~~L~~~p~~~~nL~~L~L~~n~i~--~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        711 LSGCSRLKSFPDISTNISWLDLDETAIE--EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             CCCCCCccccccccCCcCeeecCCCccc--cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            9998766554444567777777665421  1100                              0112346777777766


Q ss_pred             cCCcHHHHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCCccce
Q 046380          342 LGLRNKSLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCDHLHF  394 (434)
Q Consensus       342 ~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~  394 (434)
                      ..  ...++.-+.++++|+.|+|++|.... .++  ....+|+.|++++|..++.
T Consensus       789 ~~--l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~~~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        789 PS--LVELPSSIQNLHKLEHLEIENCINLE-TLPTGINLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             CC--ccccChhhhCCCCCCEEECCCCCCcC-eeCCCCCccccCEEECCCCCcccc
Confidence            21  11233335688889999998886522 221  2346788888888877754

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.99  E-value=7.3e-11  Score=115.31  Aligned_cols=254  Identities=18%  Similarity=0.129  Sum_probs=136.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      +-++.++++-..        ...+|...|....++++|+|+++++...      + .-.+.++.+|.+|.|+.      .
T Consensus       149 ~alrslDLSrN~--------is~i~~~sfp~~~ni~~L~La~N~It~l------~-~~~F~~lnsL~tlkLsr------N  207 (873)
T KOG4194|consen  149 PALRSLDLSRNL--------ISEIPKPSFPAKVNIKKLNLASNRITTL------E-TGHFDSLNSLLTLKLSR------N  207 (873)
T ss_pred             hhhhhhhhhhch--------hhcccCCCCCCCCCceEEeecccccccc------c-cccccccchheeeeccc------C
Confidence            456666666544        4555655565544488888888776210      0 02344566777777776      4


Q ss_pred             ee-ChHHHHHhcCCCcceeeeccccCCCCcc-----cccc-----------cccceeeccCCceeEEEEEeEEeCchhHH
Q 046380          191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFC-----CRFL-----------EFKVANENSMSSLETLVFSFMVLNDRTFE  253 (434)
Q Consensus       191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~-----~~~l-----------~~~~~~~~~~p~L~~L~l~~~~~~~~~~~  253 (434)
                      ++ .-....+.+.|+|+.|+|.++....++.     .+.+           +-.......+.++++|++.-.....- -.
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v-n~  286 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV-NE  286 (873)
T ss_pred             cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh-hc
Confidence            44 2334556667777777777776543321     0000           00111222344444444432211100 00


Q ss_pred             HHh------------------------ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecC--CCCcceee-cCC
Q 046380          254 SAL------------------------SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENC--RFDGPVEI-HSP  306 (434)
Q Consensus       254 ~~~------------------------~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c--~~l~~~~~-~~p  306 (434)
                      .++                        +.+++|+.|++++|.++.++.+ ....+.+|+.|+++..  +.+..-.+ ...
T Consensus       287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~-sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls  365 (873)
T KOG4194|consen  287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG-SFRVLSQLEELNLSHNSIDHLAEGAFVGLS  365 (873)
T ss_pred             ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh-HHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence            011                        3467777777777777776542 2344556777776653  23333334 478


Q ss_pred             cccEEEeccccCc--ccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccc-cccccccce
Q 046380          307 NLETFVYKAGHGE--IASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHL-EIYSLTLKT  383 (434)
Q Consensus       307 ~L~~L~l~~~~~~--~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~-~~~~~~L~~  383 (434)
                      +|++|++..+..+  ++--...+.++++|++|.+.|+. +.- .-..-+..+++||.|+|.++.+-.-.. .+..-+||+
T Consensus       366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~-I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~  443 (873)
T KOG4194|consen  366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKS-IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKE  443 (873)
T ss_pred             hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eee-cchhhhccCcccceecCCCCcceeecccccccchhhh
Confidence            8888888776522  11111234568899999998882 211 112223688999999999988732111 112236777


Q ss_pred             eEeccC
Q 046380          384 LVVHGC  389 (434)
Q Consensus       384 L~l~~c  389 (434)
                      |.+...
T Consensus       444 Lv~nSs  449 (873)
T KOG4194|consen  444 LVMNSS  449 (873)
T ss_pred             hhhccc
Confidence            766543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.91  E-value=8.9e-10  Score=105.80  Aligned_cols=135  Identities=16%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             CceeEEEEEeEEeCchh---HHHHhccCCCCcEEEeeccccccCCCCcch---hhccCccEEEeecCCCC----cce--e
Q 046380          235 SSLETLVFSFMVLNDRT---FESALSKFSNLETLKLLSSVFGKLPSSLSS---AILKKLKLVRMENCRFD----GPV--E  302 (434)
Q Consensus       235 p~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~---~~~~~L~~L~l~~c~~l----~~~--~  302 (434)
                      ++|+.|+++++..+...   ....+..+++|+.|++++|.++.......+   ..+++|++|++++|..-    ..+  .
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            45555555544443211   222334455566666665554421100001   11235666665554211    000  0


Q ss_pred             e-cCCcccEEEeccccCcccceeec----CCCCCCccEEEEcCccCCcHHHH---HHHHhcCCccceEEeeccccc
Q 046380          303 I-HSPNLETFVYKAGHGEIASFHFG----GRGFGNIKTLAVNGFLGLRNKSL---EELISACILLENLYLNSCAIP  370 (434)
Q Consensus       303 ~-~~p~L~~L~l~~~~~~~~~~~~~----~~~~~~Lk~L~l~~~~~~~~~~l---~~l~~~~p~Le~L~l~~~~~~  370 (434)
                      + .+++|+.|+++++.....+....    ....++|++|.+.++ .+++.+.   ......+++|+.+++++|.+.
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            1 35566666665544221111000    012356667776666 4443322   333334556677777666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.91  E-value=8.9e-10  Score=107.86  Aligned_cols=217  Identities=15%  Similarity=0.125  Sum_probs=103.7

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCR  222 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~  222 (434)
                      |+.++|..+.+ ..         |.......+|++|+|.+      ..+ .--..-++..|.||.|+|+.+.....    
T Consensus       104 Lq~v~l~~N~Lt~I---------P~f~~~sghl~~L~L~~------N~I~sv~se~L~~l~alrslDLSrN~is~i----  164 (873)
T KOG4194|consen  104 LQEVNLNKNELTRI---------PRFGHESGHLEKLDLRH------NLISSVTSEELSALPALRSLDLSRNLISEI----  164 (873)
T ss_pred             ceeeeeccchhhhc---------ccccccccceeEEeeec------cccccccHHHHHhHhhhhhhhhhhchhhcc----
Confidence            66666666666 33         23333444577777766      444 21122244466777777776665332    


Q ss_pred             cccccceeec-cCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCC--CCc
Q 046380          223 FLEFKVANEN-SMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCR--FDG  299 (434)
Q Consensus       223 ~l~~~~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~--~l~  299 (434)
                           +.-.. ..+++++|++++..+++-... .+.++.+|-.|.++.|.++.+|.. ....+++|+.|++....  -.+
T Consensus       165 -----~~~sfp~~~ni~~L~La~N~It~l~~~-~F~~lnsL~tlkLsrNrittLp~r-~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  165 -----PKPSFPAKVNIKKLNLASNRITTLETG-HFDSLNSLLTLKLSRNRITTLPQR-SFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             -----cCCCCCCCCCceEEeeccccccccccc-cccccchheeeecccCcccccCHH-Hhhhcchhhhhhccccceeeeh
Confidence                 11112 235677777766554432111 234555666667776666666642 12334555555554421  112


Q ss_pred             ceee-cCCcccEEEeccccCc--ccc-ee--------------------ecCCCCCCccEEEEcCccCCcHHHHHHHHhc
Q 046380          300 PVEI-HSPNLETFVYKAGHGE--IAS-FH--------------------FGGRGFGNIKTLAVNGFLGLRNKSLEELISA  355 (434)
Q Consensus       300 ~~~~-~~p~L~~L~l~~~~~~--~~~-~~--------------------~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~  355 (434)
                      ...+ ..|+|++|.+..+...  .++ ++                    ..+-++++|+.|+++.+ .+..-.+... +.
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~W-sf  315 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSW-SF  315 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchh-hh
Confidence            2223 3555555555443311  011 11                    01223445555555443 1111000011 35


Q ss_pred             CCccceEEeecccccc---ccccccccccceeEeccCC
Q 046380          356 CILLENLYLNSCAIPK---GHLEIYSLTLKTLVVHGCD  390 (434)
Q Consensus       356 ~p~Le~L~l~~~~~~~---~~~~~~~~~L~~L~l~~c~  390 (434)
                      |++|+.|+|+++.+..   +.+. .-.+|+.|.++++.
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHNS  352 (873)
T ss_pred             cccceeEeccccccccCChhHHH-HHHHhhhhcccccc
Confidence            7888888888887632   1111 12366777666653

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.88  E-value=1.5e-09  Score=72.42  Aligned_cols=35  Identities=37%  Similarity=0.613  Sum_probs=31.1

Q ss_pred             CCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhcc
Q 046380            7 ISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHW   41 (434)
Q Consensus         7 is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw   41 (434)
                      |+.||+||+.+||++|+.+|+++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.83  E-value=3.8e-09  Score=101.43  Aligned_cols=240  Identities=18%  Similarity=0.125  Sum_probs=136.1

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF  223 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~  223 (434)
                      |+.|.+.+|.+..   .+..+++......++|++|+++++........ ..+...+..+++|++|.+++|.......   
T Consensus        25 L~~l~l~~~~l~~---~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---   98 (319)
T cd00116          25 LQVLRLEGNTLGE---EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC---   98 (319)
T ss_pred             ccEEeecCCCCcH---HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH---
Confidence            6666666665511   01122223344666677777766211000000 1233445567788888888776632111   


Q ss_pred             ccccceeeccCCceeEEEEEeEEeCchhHH---HHhccC-CCCcEEEeeccccccCCCCc---chhhccCccEEEeecCC
Q 046380          224 LEFKVANENSMSSLETLVFSFMVLNDRTFE---SALSKF-SNLETLKLLSSVFGKLPSSL---SSAILKKLKLVRMENCR  296 (434)
Q Consensus       224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~~p~~~---~~~~~~~L~~L~l~~c~  296 (434)
                       ......... ++|++|+++++...+....   ..+... ++|+.|++++|.+..-+...   ....+++|++|++++|.
T Consensus        99 -~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116          99 -GVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             -HHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence             001111122 6688888887766643332   234555 89999999999776311100   12235689999988864


Q ss_pred             CCc----cee--e-cCCcccEEEeccccCccc---ceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcC----CccceE
Q 046380          297 FDG----PVE--I-HSPNLETFVYKAGHGEIA---SFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISAC----ILLENL  362 (434)
Q Consensus       297 ~l~----~~~--~-~~p~L~~L~l~~~~~~~~---~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~----p~Le~L  362 (434)
                      --.    .+.  + ..++|+.|+++++.....   .+......+++|++|+++++ .+++..+..+...+    +.|++|
T Consensus       177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L  255 (319)
T cd00116         177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTL  255 (319)
T ss_pred             CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEE
Confidence            221    111  1 356899999887653311   12223456788999999888 67776666666554    789999


Q ss_pred             Eeeccccccccc----cc--cccccceeEeccCCccc
Q 046380          363 YLNSCAIPKGHL----EI--YSLTLKTLVVHGCDHLH  393 (434)
Q Consensus       363 ~l~~~~~~~~~~----~~--~~~~L~~L~l~~c~~l~  393 (434)
                      ++++|.+.....    ..  ...+|+.++++++..-+
T Consensus       256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            999988742111    11  12478888888875543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.76  E-value=4.6e-10  Score=110.62  Aligned_cols=243  Identities=14%  Similarity=0.124  Sum_probs=136.2

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      ++.-.|.+++..        ...+|..+|....-|-.|+|++++++.        +||-...+.+|++|.|++      .
T Consensus       126 Kn~iVLNLS~N~--------IetIPn~lfinLtDLLfLDLS~NrLe~--------LPPQ~RRL~~LqtL~Ls~------N  183 (1255)
T KOG0444|consen  126 KNSIVLNLSYNN--------IETIPNSLFINLTDLLFLDLSNNRLEM--------LPPQIRRLSMLQTLKLSN------N  183 (1255)
T ss_pred             cCcEEEEcccCc--------cccCCchHHHhhHhHhhhccccchhhh--------cCHHHHHHhhhhhhhcCC------C
Confidence            455555555444        455555555443336666666666643        345556666666666665      2


Q ss_pred             eeChHHH-HHhcCCC---cceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEE
Q 046380          191 EMDAPRL-NYFQCSG---IRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLK  266 (434)
Q Consensus       191 ~~~~l~~-~~~~cp~---L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  266 (434)
                      ..   .. -+...|.   |+.|.+++....       +..++...-.+.||..++++......  +..-+-.+++|++|+
T Consensus       184 PL---~hfQLrQLPsmtsL~vLhms~TqRT-------l~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  184 PL---NHFQLRQLPSMTSLSVLHMSNTQRT-------LDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRNLRRLN  251 (1255)
T ss_pred             hh---hHHHHhcCccchhhhhhhcccccch-------hhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhhhheec
Confidence            22   11 1222333   333333332221       01112222233445555444322111  122344566667777


Q ss_pred             eeccccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccC
Q 046380          267 LLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLG  343 (434)
Q Consensus       267 l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~  343 (434)
                      +++|.++++...  ...-.+|++|+++... +..+  .+ +.++|+.|....+...+++++.+...+.+|+.+...++  
T Consensus       252 LS~N~iteL~~~--~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN--  326 (1255)
T KOG0444|consen  252 LSGNKITELNMT--EGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN--  326 (1255)
T ss_pred             cCcCceeeeecc--HHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc--
Confidence            776666654421  2234466666666532 2111  11 57777777777777777777777778888888777666  


Q ss_pred             CcHHHHHHHHhcCCccceEEeecccccc--ccccccccccceeEeccCCccce
Q 046380          344 LRNKSLEELISACILLENLYLNSCAIPK--GHLEIYSLTLKTLVVHGCDHLHF  394 (434)
Q Consensus       344 ~~~~~l~~l~~~~p~Le~L~l~~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~  394 (434)
                       ..+.+++-+..|+.|++|.|+.++..+  ..|. ..+.|+.|++.+.++|-.
T Consensus       327 -~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIH-lL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  327 -KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIH-LLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             -ccccCchhhhhhHHHHHhcccccceeechhhhh-hcCCcceeeccCCcCccC
Confidence             455667777899999999999998743  2222 346899999999999853

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.67  E-value=6.6e-10  Score=109.53  Aligned_cols=210  Identities=16%  Similarity=0.106  Sum_probs=111.9

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL  224 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l  224 (434)
                      |+++.++.+.+..      +|+|+..+.+..|+.|+|++      .....+..-+...+++-.|+|+++.+....     
T Consensus        80 LRsv~~R~N~LKn------sGiP~diF~l~dLt~lDLSh------NqL~EvP~~LE~AKn~iVLNLS~N~IetIP-----  142 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKN------SGIPTDIFRLKDLTILDLSH------NQLREVPTNLEYAKNSIVLNLSYNNIETIP-----  142 (1255)
T ss_pred             hHHHhhhcccccc------CCCCchhcccccceeeecch------hhhhhcchhhhhhcCcEEEEcccCccccCC-----
Confidence            6666777666633      57777888888888888887      444233344555677778888877763221     


Q ss_pred             cccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecccccc-----CCCCcchhhccCccEEEeecCC---
Q 046380          225 EFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGK-----LPSSLSSAILKKLKLVRMENCR---  296 (434)
Q Consensus       225 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~p~~~~~~~~~~L~~L~l~~c~---  296 (434)
                         ..+.+++.-|-.|++++.....  ....+..+.+|++|++++|.+..     +|.      ++.|..|.+++-.   
T Consensus       143 ---n~lfinLtDLLfLDLS~NrLe~--LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs------mtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  143 ---NSLFINLTDLLFLDLSNNRLEM--LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS------MTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             ---chHHHhhHhHhhhccccchhhh--cCHHHHHHhhhhhhhcCCChhhHHHHhcCcc------chhhhhhhcccccchh
Confidence               1122334445555555443221  12234566677777777775432     443      5555666665531   


Q ss_pred             -CCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccc
Q 046380          297 -FDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHL  374 (434)
Q Consensus       297 -~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~  374 (434)
                       ++- ..+ ++.||..++++.+..+  .++...-.+.+|+.|+++++ .++.-.+  -.....+||+|+++.+.. ....
T Consensus       212 ~N~P-tsld~l~NL~dvDlS~N~Lp--~vPecly~l~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSrNQL-t~LP  284 (1255)
T KOG0444|consen  212 DNIP-TSLDDLHNLRDVDLSENNLP--IVPECLYKLRNLRRLNLSGN-KITELNM--TEGEWENLETLNLSRNQL-TVLP  284 (1255)
T ss_pred             hcCC-CchhhhhhhhhccccccCCC--cchHHHhhhhhhheeccCcC-ceeeeec--cHHHHhhhhhhccccchh-ccch
Confidence             111 122 4566666666665432  22223345567777777766 2222111  112345677777777765 2111


Q ss_pred             cc--cccccceeEeccC
Q 046380          375 EI--YSLTLKTLVVHGC  389 (434)
Q Consensus       375 ~~--~~~~L~~L~l~~c  389 (434)
                      ..  ..++|++|...+.
T Consensus       285 ~avcKL~kL~kLy~n~N  301 (1255)
T KOG0444|consen  285 DAVCKLTKLTKLYANNN  301 (1255)
T ss_pred             HHHhhhHHHHHHHhccC
Confidence            11  1245666655444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=8.5e-10  Score=99.75  Aligned_cols=180  Identities=17%  Similarity=0.125  Sum_probs=113.5

Q ss_pred             ccceEEEeeecccceEee--ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEE-eCchh
Q 046380          175 SVRRLVVRGCMALQGFEM--DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMV-LNDRT  251 (434)
Q Consensus       175 ~L~~L~L~~c~~~~~~~~--~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~-~~~~~  251 (434)
                      .|++|+|+.      ..+  ..+..+++.|.+|+.|.+.+....+.-        ....-.-.+|+.|+++.+. .+..+
T Consensus       186 Rlq~lDLS~------s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I--------~~~iAkN~~L~~lnlsm~sG~t~n~  251 (419)
T KOG2120|consen  186 RLQHLDLSN------SVITVSTLHGILSQCSKLKNLSLEGLRLDDPI--------VNTIAKNSNLVRLNLSMCSGFTENA  251 (419)
T ss_pred             hhHHhhcch------hheeHHHHHHHHHHHHhhhhccccccccCcHH--------HHHHhccccceeeccccccccchhH
Confidence            377777776      545  266777777777777777777654321        1112234567777776554 33444


Q ss_pred             HHHHhccCCCCcEEEeeccccccCCCCc-chhhccCccEEEeecCC-CC-----cceeecCCcccEEEeccccCccccee
Q 046380          252 FESALSKFSNLETLKLLSSVFGKLPSSL-SSAILKKLKLVRMENCR-FD-----GPVEIHSPNLETFVYKAGHGEIASFH  324 (434)
Q Consensus       252 ~~~~~~~~~~L~~L~l~~~~~~~~p~~~-~~~~~~~L~~L~l~~c~-~l-----~~~~~~~p~L~~L~l~~~~~~~~~~~  324 (434)
                      ..-+++.|..|+.|+++.|.+..-...+ .++.-++|+.|++++|. ++     +.+.-.||+|.+|+++.+.+--+.+.
T Consensus       252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~  331 (419)
T KOG2120|consen  252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF  331 (419)
T ss_pred             HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence            4446688899999999888543211111 12334578888888874 22     22222588888888887654323333


Q ss_pred             ecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          325 FGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       325 ~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ..+-.++-|++|.++.|+++..+.+..+- ..|+|..|++.+|--
T Consensus       332 ~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  332 QEFFKFNYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFGCVS  375 (419)
T ss_pred             HHHHhcchheeeehhhhcCCChHHeeeec-cCcceEEEEeccccC
Confidence            44556778888888888777777666554 678888888887754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.61  E-value=2.2e-07  Score=97.66  Aligned_cols=118  Identities=17%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      .+-..|+++...        ...+|..+..  + |+.|.+.++.+..        +|   ...++|++|++++      +
T Consensus       201 ~~~~~LdLs~~~--------LtsLP~~l~~--~-L~~L~L~~N~Lt~--------LP---~lp~~Lk~LdLs~------N  252 (788)
T PRK15387        201 NGNAVLNVGESG--------LTTLPDCLPA--H-ITTLVIPDNNLTS--------LP---ALPPELRTLEVSG------N  252 (788)
T ss_pred             CCCcEEEcCCCC--------CCcCCcchhc--C-CCEEEccCCcCCC--------CC---CCCCCCcEEEecC------C
Confidence            455567666544        4567776543  4 8888888887732        12   2357899999987      4


Q ss_pred             eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380          191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS  270 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (434)
                      .+..+.   ...++|++|.+.+|.....         +   ...++|+.|.++++....     +....++|+.|++++|
T Consensus       253 ~LtsLP---~lp~sL~~L~Ls~N~L~~L---------p---~lp~~L~~L~Ls~N~Lt~-----LP~~p~~L~~LdLS~N  312 (788)
T PRK15387        253 QLTSLP---VLPPGLLELSIFSNPLTHL---------P---ALPSGLCKLWIFGNQLTS-----LPVLPPGLQELSVSDN  312 (788)
T ss_pred             ccCccc---CcccccceeeccCCchhhh---------h---hchhhcCEEECcCCcccc-----ccccccccceeECCCC
Confidence            331111   1246778888877755211         1   112345555555443221     1223355666666666


Q ss_pred             ccccCC
Q 046380          271 VFGKLP  276 (434)
Q Consensus       271 ~~~~~p  276 (434)
                      .+..+|
T Consensus       313 ~L~~Lp  318 (788)
T PRK15387        313 QLASLP  318 (788)
T ss_pred             ccccCC
Confidence            655554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=3.1e-08  Score=94.20  Aligned_cols=204  Identities=17%  Similarity=0.111  Sum_probs=133.8

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-C--hHHHHHhcCCCcceeeeccccCCCCccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D--APRLNYFQCSGIRDFDEAFVYRPDHFCC  221 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp~L~~L~l~~~~~~~~~~~  221 (434)
                      |+...|.++....      +|.......|++++.|+|+.      .-+ +  .+..++...|+||.|+++.+....... 
T Consensus       123 L~~IsLdn~~V~~------~~~~~~~k~~~~v~~LdLS~------NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-  189 (505)
T KOG3207|consen  123 LREISLDNYRVED------AGIEEYSKILPNVRDLDLSR------NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-  189 (505)
T ss_pred             hhheeecCccccc------cchhhhhhhCCcceeecchh------hhHHhHHHHHHHHHhcccchhcccccccccCCcc-
Confidence            7888888876633      11112456899999999998      555 4  778888999999999999887743211 


Q ss_pred             ccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce
Q 046380          222 RFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV  301 (434)
Q Consensus       222 ~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~  301 (434)
                            .......++|+.|.++.|..+-..+......+|+|+.|.+.+|..... .......+..|+.|++++...+...
T Consensus       190 ------s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~~  262 (505)
T KOG3207|consen  190 ------SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDFD  262 (505)
T ss_pred             ------ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCcccccc
Confidence                  223447889999999999888777777788999999999998841111 1112345778888888886554433


Q ss_pred             ee----cCCcccEEEeccccCc-ccce----eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          302 EI----HSPNLETFVYKAGHGE-IASF----HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       302 ~~----~~p~L~~L~l~~~~~~-~~~~----~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ..    ..|.|+.|.+..+... +...    ..-...+++|+.|.+..+.-..+..+..+. ..++|+.|.+..+.+
T Consensus       263 ~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  263 QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYL  338 (505)
T ss_pred             cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhcccccc
Confidence            22    4777777777665422 1110    011245677888887766222344554443 567777777666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.51  E-value=3.2e-09  Score=109.16  Aligned_cols=228  Identities=19%  Similarity=0.152  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccce
Q 046380           99 LITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRR  178 (434)
Q Consensus        99 ~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~  178 (434)
                      .+..|+..+   .+++.+......        ...+|..++...+ |++|....|.+.-        +|+....+++|++
T Consensus       255 ~lp~wi~~~---~nle~l~~n~N~--------l~~lp~ri~~~~~-L~~l~~~~nel~y--------ip~~le~~~sL~t  314 (1081)
T KOG0618|consen  255 NLPEWIGAC---ANLEALNANHNR--------LVALPLRISRITS-LVSLSAAYNELEY--------IPPFLEGLKSLRT  314 (1081)
T ss_pred             cchHHHHhc---ccceEecccchh--------HHhhHHHHhhhhh-HHHHHhhhhhhhh--------CCCcccccceeee
Confidence            345677665   677777766544        4667777776666 7777777776622        3466677888888


Q ss_pred             EEEeeecccceEee-ChHHHHHhcCCC-cceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHh
Q 046380          179 LVVRGCMALQGFEM-DAPRLNYFQCSG-IRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESAL  256 (434)
Q Consensus       179 L~L~~c~~~~~~~~-~~l~~~~~~cp~-L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~  256 (434)
                      |+|..      ..+ +-....++..+. |+.|..+.+......        ..-....+.|+.|.+.+...++..+. .+
T Consensus       315 LdL~~------N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp--------~~~e~~~~~Lq~LylanN~Ltd~c~p-~l  379 (1081)
T KOG0618|consen  315 LDLQS------NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP--------SYEENNHAALQELYLANNHLTDSCFP-VL  379 (1081)
T ss_pred             eeehh------ccccccchHHHhhhhHHHHHHhhhhccccccc--------cccchhhHHHHHHHHhcCcccccchh-hh
Confidence            88887      444 211122221111 333333333221110        11122345566666666666665544 55


Q ss_pred             ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee---cCCcccEEEeccccCcccceeecCCCCCCc
Q 046380          257 SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI---HSPNLETFVYKAGHGEIASFHFGGRGFGNI  333 (434)
Q Consensus       257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L  333 (434)
                      .++++|+.|+++.|.++.+|.+ ...++..|++|.+++. .+..+..   .++.|++|....+.+.  .++ .....+.|
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas-~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~--~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPAS-KLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLL--SFP-ELAQLPQL  454 (1081)
T ss_pred             ccccceeeeeecccccccCCHH-HHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCcee--ech-hhhhcCcc
Confidence            6777777777777777776642 1223445555556553 2222221   4666666665555432  222 34455666


Q ss_pred             cEEEEcCccCCcHHHHHHHHhcCCccceEEeeccc
Q 046380          334 KTLAVNGFLGLRNKSLEELISACILLENLYLNSCA  368 (434)
Q Consensus       334 k~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~  368 (434)
                      +.++++.+ .++.-.+.+-.. .|+|+.|+++++.
T Consensus       455 ~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  455 KVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             eEEecccc-hhhhhhhhhhCC-CcccceeeccCCc
Confidence            66666555 333333332221 2566666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.48  E-value=1.9e-07  Score=98.47  Aligned_cols=221  Identities=13%  Similarity=0.119  Sum_probs=111.6

Q ss_pred             cCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccce
Q 046380          110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      ..+..+|++....        ...+|..+.  .. |+.|+|++|.+..        +|..  .+++|++|++++      
T Consensus       177 ~~~~~~L~L~~~~--------LtsLP~~Ip--~~-L~~L~Ls~N~Lts--------LP~~--l~~nL~~L~Ls~------  229 (754)
T PRK15370        177 KNNKTELRLKILG--------LTTIPACIP--EQ-ITTLILDNNELKS--------LPEN--LQGNIKTLYANS------  229 (754)
T ss_pred             ccCceEEEeCCCC--------cCcCCcccc--cC-CcEEEecCCCCCc--------CChh--hccCCCEEECCC------
Confidence            3456777776543        445565443  23 8888998887732        2222  235888888887      


Q ss_pred             EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhc-cCCCCcEEEee
Q 046380          190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALS-KFSNLETLKLL  268 (434)
Q Consensus       190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~  268 (434)
                      +.+..+...+  .++|+.|.+++|.......           ....+|+.|+++++....     +.. -.++|+.|+++
T Consensus       230 N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~-----------~l~s~L~~L~Ls~N~L~~-----LP~~l~~sL~~L~Ls  291 (754)
T PRK15370        230 NQLTSIPATL--PDTIQEMELSINRITELPE-----------RLPSALQSLDLFHNKISC-----LPENLPEELRYLSVY  291 (754)
T ss_pred             CccccCChhh--hccccEEECcCCccCcCCh-----------hHhCCCCEEECcCCccCc-----cccccCCCCcEEECC
Confidence            4331122111  2478888888876632210           012357777776544332     111 12467777777


Q ss_pred             ccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH
Q 046380          269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS  348 (434)
Q Consensus       269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~  348 (434)
                      +|.++.+|..+    ..+|+.|+++++..........++|+.|.+..+..+  ++...  -.++|+.|.++++ .+..  
T Consensus       292 ~N~Lt~LP~~l----p~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt--~LP~~--l~~sL~~L~Ls~N-~L~~--  360 (754)
T PRK15370        292 DNSIRTLPAHL----PSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT--SLPAS--LPPELQVLDVSKN-QITV--  360 (754)
T ss_pred             CCccccCcccc----hhhHHHHHhcCCccccCCccccccceeccccCCccc--cCChh--hcCcccEEECCCC-CCCc--
Confidence            77777666421    235666666654322111112356666666554422  11111  1246666666665 2321  


Q ss_pred             HHHHHhcCCccceEEeeccccccccccccccccceeEeccC
Q 046380          349 LEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGC  389 (434)
Q Consensus       349 l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c  389 (434)
                      ++.-  -.++|+.|+|++|.+. .........|+.|++++|
T Consensus       361 LP~~--lp~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N  398 (754)
T PRK15370        361 LPET--LPPTITTLDVSRNALT-NLPENLPAALQIMQASRN  398 (754)
T ss_pred             CChh--hcCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccC
Confidence            1110  1246666666666652 111112234555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.46  E-value=6.2e-07  Score=94.31  Aligned_cols=218  Identities=17%  Similarity=0.092  Sum_probs=111.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      ++++.|.+..+.        ...+|..   ..+ |++|++++|.+..        +|   ...++|++|++.+      +
T Consensus       222 ~~L~~L~L~~N~--------Lt~LP~l---p~~-Lk~LdLs~N~Lts--------LP---~lp~sL~~L~Ls~------N  272 (788)
T PRK15387        222 AHITTLVIPDNN--------LTSLPAL---PPE-LRTLEVSGNQLTS--------LP---VLPPGLLELSIFS------N  272 (788)
T ss_pred             cCCCEEEccCCc--------CCCCCCC---CCC-CcEEEecCCccCc--------cc---CcccccceeeccC------C
Confidence            477888877654        4455542   234 9999999988732        12   2346788888877      3


Q ss_pred             eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCch---------------hHHHH
Q 046380          191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDR---------------TFESA  255 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~---------------~~~~~  255 (434)
                      .+   ..+-...++|+.|.+.+|.....         +   ...|+|+.|+++++.....               .+..+
T Consensus       273 ~L---~~Lp~lp~~L~~L~Ls~N~Lt~L---------P---~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~L  337 (788)
T PRK15387        273 PL---THLPALPSGLCKLWIFGNQLTSL---------P---VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL  337 (788)
T ss_pred             ch---hhhhhchhhcCEEECcCCccccc---------c---ccccccceeECCCCccccCCCCcccccccccccCccccc
Confidence            22   11111224555666655544211         1   1124455554443322210               00001


Q ss_pred             hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380          256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKT  335 (434)
Q Consensus       256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~  335 (434)
                      ....++|+.|++++|.+..+|..     ..+|+.|.+++.. +..+.-..++|+.|+++++...  ++.   ...++|+.
T Consensus       338 P~lp~~Lq~LdLS~N~Ls~LP~l-----p~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt--~LP---~l~s~L~~  406 (788)
T PRK15387        338 PTLPSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLT--SLP---VLPSELKE  406 (788)
T ss_pred             cccccccceEecCCCccCCCCCC-----Ccccceehhhccc-cccCcccccccceEEecCCccc--CCC---CcccCCCE
Confidence            11123667777777766666541     3456666655432 2222223456777777765533  221   12356777


Q ss_pred             EEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc---ccccccceeEeccCCc
Q 046380          336 LAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE---IYSLTLKTLVVHGCDH  391 (434)
Q Consensus       336 L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~---~~~~~L~~L~l~~c~~  391 (434)
                      |+++++ .++  .++.   ...+|+.|++++|.+.  .++   ....+|+.|++++++.
T Consensus       407 LdLS~N-~Ls--sIP~---l~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        407 LMVSGN-RLT--SLPM---LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             EEccCC-cCC--CCCc---chhhhhhhhhccCccc--ccChHHhhccCCCeEECCCCCC
Confidence            777776 332  1222   1235777777777762  121   1234677788887753

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.41  E-value=7.5e-08  Score=64.53  Aligned_cols=37  Identities=43%  Similarity=0.618  Sum_probs=30.9

Q ss_pred             CCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhcccc
Q 046380            7 ISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLC   43 (434)
Q Consensus         7 is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw~~   43 (434)
                      +++||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999987643

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.38  E-value=4.4e-08  Score=90.72  Aligned_cols=87  Identities=20%  Similarity=0.216  Sum_probs=57.2

Q ss_pred             cCCcccEEEeccccCccc-c--eeecCCCCCCccEEEEcCccCCcHHHH----HHHHhcCCccceEEeeccccccccccc
Q 046380          304 HSPNLETFVYKAGHGEIA-S--FHFGGRGFGNIKTLAVNGFLGLRNKSL----EELISACILLENLYLNSCAIPKGHLEI  376 (434)
Q Consensus       304 ~~p~L~~L~l~~~~~~~~-~--~~~~~~~~~~Lk~L~l~~~~~~~~~~l----~~l~~~~p~Le~L~l~~~~~~~~~~~~  376 (434)
                      .||+|+.|++..+-.+.. +  +-...+.+++|+.|+++.| .+.+++.    ..+-+..|+|+.|.+.+|.+..+....
T Consensus       211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~  289 (382)
T KOG1909|consen  211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA  289 (382)
T ss_pred             hCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence            488888888877654322 1  2234566778889988888 5555533    444457889999999998874322211


Q ss_pred             ------cccccceeEeccCCc
Q 046380          377 ------YSLTLKTLVVHGCDH  391 (434)
Q Consensus       377 ------~~~~L~~L~l~~c~~  391 (434)
                            --+.|++|++++|..
T Consensus       290 la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  290 LAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhcchhhHHhcCCcccc
Confidence                  135788888888865

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=5.3e-08  Score=92.63  Aligned_cols=42  Identities=12%  Similarity=0.064  Sum_probs=29.5

Q ss_pred             cccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccC
Q 046380          168 LSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       168 ~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      ....++.+|+...|.+      ..+ + ..+.....||++++|+|+.+-.
T Consensus       115 akQsn~kkL~~IsLdn------~~V~~~~~~~~~k~~~~v~~LdLS~NL~  158 (505)
T KOG3207|consen  115 AKQSNLKKLREISLDN------YRVEDAGIEEYSKILPNVRDLDLSRNLF  158 (505)
T ss_pred             HHhhhHHhhhheeecC------ccccccchhhhhhhCCcceeecchhhhH
Confidence            3445788888888887      444 3 3335677788888888887765

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.32  E-value=5.8e-07  Score=57.86  Aligned_cols=33  Identities=42%  Similarity=0.671  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHcCCChHHHHHHhhhhhhhhhccc
Q 046380           10 LPDDLTHHIMSLLPMKDIARTSILSKRWMSHWL   42 (434)
Q Consensus        10 LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw~   42 (434)
                      ||+|++.+||++|+.+|+.+++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999998654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.25  E-value=3.2e-07  Score=85.14  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=52.2

Q ss_pred             CCcccEEEeccccCcccce---eecCCCCCCccEEEEcCccCCcHH---HHHHHHhcCCccceEEeecccccc-------
Q 046380          305 SPNLETFVYKAGHGEIASF---HFGGRGFGNIKTLAVNGFLGLRNK---SLEELISACILLENLYLNSCAIPK-------  371 (434)
Q Consensus       305 ~p~L~~L~l~~~~~~~~~~---~~~~~~~~~Lk~L~l~~~~~~~~~---~l~~l~~~~p~Le~L~l~~~~~~~-------  371 (434)
                      .|.|+++.+..+.....+.   ...+.+|++|+.|+|..+ -++.+   .+..-+..+|+|+.|++++|.+-.       
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            5777777766654332222   224567778888887766 34444   344445567777788888776633       


Q ss_pred             ccccccccccceeEeccCCccc
Q 046380          372 GHLEIYSLTLKTLVVHGCDHLH  393 (434)
Q Consensus       372 ~~~~~~~~~L~~L~l~~c~~l~  393 (434)
                      ..+....+.|+.|.+.+|..-.
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             HHHhccCCCCceeccCcchhHH
Confidence            2222234577777777776544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.18  E-value=2.7e-07  Score=93.73  Aligned_cols=210  Identities=17%  Similarity=0.130  Sum_probs=102.6

Q ss_pred             cCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccc-cCCCCcccccccccceeeccCCceeEEEEEeEE-e
Q 046380          172 FNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFV-YRPDHFCCRFLEFKVANENSMSSLETLVFSFMV-L  247 (434)
Q Consensus       172 ~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~-~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~-~  247 (434)
                      .+++|+.|.+..|     ..+ + .+..+...||+|++|.+.+| .......    .........+++|+.++++.+. .
T Consensus       186 ~~~~L~~l~l~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~L~~l~l~~~~~i  256 (482)
T KOG1947|consen  186 SCPLLKRLSLSGC-----SKITDDSLDALALKCPNLEELDLSGCCLLITLSP----LLLLLLLSICRKLKSLDLSGCGLV  256 (482)
T ss_pred             hCchhhHhhhccc-----ccCChhhHHHHHhhCchhheecccCcccccccch----hHhhhhhhhcCCcCccchhhhhcc
Confidence            3556666666553     222 2 34555555666666666553 1111000    0011122334555555555544 4


Q ss_pred             CchhHHHHhccCCCCcEEEeeccc-cccCCCCcchhhccCccEEEeecCCCCcce-----eecCCcccEEEeccc-----
Q 046380          248 NDRTFESALSKFSNLETLKLLSSV-FGKLPSSLSSAILKKLKLVRMENCRFDGPV-----EIHSPNLETFVYKAG-----  316 (434)
Q Consensus       248 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~-----~~~~p~L~~L~l~~~-----  316 (434)
                      ++..+..+...+++|+.|.+..|. ++..........+++|++|+++.|..+...     ...||+++.|.+...     
T Consensus       257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~  336 (482)
T KOG1947|consen  257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPS  336 (482)
T ss_pred             CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCcc
Confidence            444444444455666666555443 333222222334555666666655443221     113555555443221     


Q ss_pred             ---------cC-c-ccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeE
Q 046380          317 ---------HG-E-IASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLV  385 (434)
Q Consensus       317 ---------~~-~-~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~  385 (434)
                               .. . ..........+++|+.+.+..+. .++..+..++.+||.|. ..+..+..       ....++.|.
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~-------~~~~l~~L~  407 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLC-------RSDSLRVLN  407 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhc-------cCCccceEe
Confidence                     10 0 01112234567777888777773 66666667777777773 33222221       112288999


Q ss_pred             eccCCccceeeEec
Q 046380          386 VHGCDHLHFAEIQA  399 (434)
Q Consensus       386 l~~c~~l~~~~i~~  399 (434)
                      ++.|...+...+..
T Consensus       408 l~~~~~~t~~~l~~  421 (482)
T KOG1947|consen  408 LSDCRLVTDKGLRC  421 (482)
T ss_pred             cccCccccccchHH
Confidence            99998887554443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.16  E-value=1.2e-06  Score=92.42  Aligned_cols=201  Identities=14%  Similarity=0.094  Sum_probs=111.9

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      ++++.|+++.+.        ...+|..++.  + |++|++++|.+..        +|..  -.++|+.|+|++      +
T Consensus       199 ~~L~~L~Ls~N~--------LtsLP~~l~~--n-L~~L~Ls~N~Lts--------LP~~--l~~~L~~L~Ls~------N  251 (754)
T PRK15370        199 EQITTLILDNNE--------LKSLPENLQG--N-IKTLYANSNQLTS--------IPAT--LPDTIQEMELSI------N  251 (754)
T ss_pred             cCCcEEEecCCC--------CCcCChhhcc--C-CCEEECCCCcccc--------CChh--hhccccEEECcC------C
Confidence            578888887665        5567776653  4 9999999988732        1221  235799999988      4


Q ss_pred             eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380          191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS  270 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (434)
                      .+..+...+  ..+|+.|++++|.....         +.  ...++|+.|+++++.......    .-.++|+.|++++|
T Consensus       252 ~L~~LP~~l--~s~L~~L~Ls~N~L~~L---------P~--~l~~sL~~L~Ls~N~Lt~LP~----~lp~sL~~L~Ls~N  314 (754)
T PRK15370        252 RITELPERL--PSALQSLDLFHNKISCL---------PE--NLPEELRYLSVYDNSIRTLPA----HLPSGITHLNVQSN  314 (754)
T ss_pred             ccCcCChhH--hCCCCEEECcCCccCcc---------cc--ccCCCCcEEECCCCccccCcc----cchhhHHHHHhcCC
Confidence            441121111  24789999987765321         11  112578888887664432110    01135777777777


Q ss_pred             ccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHH
Q 046380          271 VFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSL  349 (434)
Q Consensus       271 ~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l  349 (434)
                      .+..+|..+    .++|+.|.+++|.. ..+.- -+++|+.|+++.+...  .+....  .++|++|+++++ .+..- .
T Consensus       315 ~Lt~LP~~l----~~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N~L~--~LP~~l--p~~L~~LdLs~N-~Lt~L-P  383 (754)
T PRK15370        315 SLTALPETL----PPGLKTLEAGENAL-TSLPASLPPELQVLDVSKNQIT--VLPETL--PPTITTLDVSRN-ALTNL-P  383 (754)
T ss_pred             ccccCCccc----cccceeccccCCcc-ccCChhhcCcccEEECCCCCCC--cCChhh--cCCcCEEECCCC-cCCCC-C
Confidence            777666422    35677777776532 21211 2467777777765532  111111  246777777766 33210 0


Q ss_pred             HHHHhcCCccceEEeecccc
Q 046380          350 EELISACILLENLYLNSCAI  369 (434)
Q Consensus       350 ~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ..+.   +.|+.|++++|.+
T Consensus       384 ~~l~---~sL~~LdLs~N~L  400 (754)
T PRK15370        384 ENLP---AALQIMQASRNNL  400 (754)
T ss_pred             HhHH---HHHHHHhhccCCc
Confidence            1111   2466666666655

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.14  E-value=1.1e-07  Score=96.68  Aligned_cols=206  Identities=19%  Similarity=0.180  Sum_probs=100.8

Q ss_pred             ccccCcccceEEEeeecccceEee-C---hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEe
Q 046380          169 SNFFNPSVRRLVVRGCMALQGFEM-D---APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSF  244 (434)
Q Consensus       169 ~~~~~~~L~~L~L~~c~~~~~~~~-~---~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~  244 (434)
                      ....+++|+.|++++|.    ..+ .   ....+...|++|++|++.+|......      .+..+...+|+|+.|.+.+
T Consensus       209 ~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~------~l~~l~~~c~~L~~L~l~~  278 (482)
T KOG1947|consen  209 LALKCPNLEELDLSGCC----LLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI------GLSALASRCPNLETLSLSN  278 (482)
T ss_pred             HHhhCchhheecccCcc----cccccchhHhhhhhhhcCCcCccchhhhhccCch------hHHHHHhhCCCcceEccCC
Confidence            34455666666655420    111 1   22234455566666666555532211      1222222355566655554


Q ss_pred             EE-eCchhHHHHhccCCCCcEEEeeccccc-cCCCCcchhhccCccEEEeec---CCCCccee----------------e
Q 046380          245 MV-LNDRTFESALSKFSNLETLKLLSSVFG-KLPSSLSSAILKKLKLVRMEN---CRFDGPVE----------------I  303 (434)
Q Consensus       245 ~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~---c~~l~~~~----------------~  303 (434)
                      +. .++..+..+...+++|+.|++++|... +.........+++|+.|.+..   |+.++...                .
T Consensus       279 c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~  358 (482)
T KOG1947|consen  279 CSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELIL  358 (482)
T ss_pred             CCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHH
Confidence            44 455555555555666666666655321 100000012244444433222   22222221                1


Q ss_pred             -cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccc-cccccc---c
Q 046380          304 -HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPK-GHLEIY---S  378 (434)
Q Consensus       304 -~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~-~~~~~~---~  378 (434)
                       .+++++.+.+........+.           .+.+.+|..++ +.+......++.++.|+++.|.... ..+...   .
T Consensus       359 ~~~~~l~~~~l~~~~~~~~~~-----------~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~  426 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCGISDLGL-----------ELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSC  426 (482)
T ss_pred             hcCCCcchhhhhhhhccCcch-----------HHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhh
Confidence             36666666655432111111           35556665555 6666666666779999999998633 222222   5


Q ss_pred             cccceeEeccCCccceee
Q 046380          379 LTLKTLVVHGCDHLHFAE  396 (434)
Q Consensus       379 ~~L~~L~l~~c~~l~~~~  396 (434)
                      ..++.+++.+|+......
T Consensus       427 ~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  427 SNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             hccccCCccCcccccchh
Confidence            567888999998887443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.10  E-value=2e-07  Score=96.20  Aligned_cols=88  Identities=16%  Similarity=0.151  Sum_probs=51.6

Q ss_pred             CcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhH
Q 046380          173 NPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF  252 (434)
Q Consensus       173 ~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~  252 (434)
                      -.+|+++++++      ..+..+..++..|++|+.+....+.....         ........+|++|....+.+.  -.
T Consensus       240 p~nl~~~dis~------n~l~~lp~wi~~~~nle~l~~n~N~l~~l---------p~ri~~~~~L~~l~~~~nel~--yi  302 (1081)
T KOG0618|consen  240 PLNLQYLDISH------NNLSNLPEWIGACANLEALNANHNRLVAL---------PLRISRITSLVSLSAAYNELE--YI  302 (1081)
T ss_pred             cccceeeecch------hhhhcchHHHHhcccceEecccchhHHhh---------HHHHhhhhhHHHHHhhhhhhh--hC
Confidence            34688888887      55534558888899999999988876321         111222334444433221111  01


Q ss_pred             HHHhccCCCCcEEEeeccccccCCC
Q 046380          253 ESALSKFSNLETLKLLSSVFGKLPS  277 (434)
Q Consensus       253 ~~~~~~~~~L~~L~l~~~~~~~~p~  277 (434)
                      .........|++|++..+.+..+|.
T Consensus       303 p~~le~~~sL~tLdL~~N~L~~lp~  327 (1081)
T KOG0618|consen  303 PPFLEGLKSLRTLDLQSNNLPSLPD  327 (1081)
T ss_pred             CCcccccceeeeeeehhccccccch
Confidence            1133556777777777777776665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.06  E-value=1.3e-07  Score=89.04  Aligned_cols=40  Identities=15%  Similarity=0.222  Sum_probs=29.9

Q ss_pred             CCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          327 GRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       327 ~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ...+.+|++|++.++   +.+.++.+++++.+|++|.+.++++
T Consensus       501 l~nm~nL~tLDL~nN---dlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNN---DLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             hhhhhhcceeccCCC---chhhCChhhccccceeEEEecCCcc
Confidence            455677777777776   5667777778888888888888776

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.04  E-value=2.8e-06  Score=73.43  Aligned_cols=62  Identities=15%  Similarity=0.004  Sum_probs=27.7

Q ss_pred             CCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH--HHHHHHhcCCccceEEeecc
Q 046380          305 SPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK--SLEELISACILLENLYLNSC  367 (434)
Q Consensus       305 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~--~l~~l~~~~p~Le~L~l~~~  367 (434)
                      +|+|++|.++++....-........+++|+.|.+.++ .++..  .-..++..+|+|+.||-...
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEc
Confidence            5666666666554321111123456777888888777 33332  45667778899999885443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.03  E-value=5.9e-06  Score=71.39  Aligned_cols=56  Identities=9%  Similarity=-0.066  Sum_probs=17.1

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChH-HHHHhcCCCcceeeeccccCC
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAP-RLNYFQCSGIRDFDEAFVYRP  216 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l-~~~~~~cp~L~~L~l~~~~~~  216 (434)
                      |+.|+|++|.+ ..          +....+++|++|++++      ..+..+ ..+...||+|++|.+.++...
T Consensus        44 L~~L~Ls~N~I~~l----------~~l~~L~~L~~L~L~~------N~I~~i~~~l~~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   44 LEVLDLSNNQITKL----------EGLPGLPRLKTLDLSN------NRISSISEGLDKNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             --EEE-TTS--S------------TT----TT--EEE--S------S---S-CHHHHHH-TT--EEE-TTS---
T ss_pred             CCEEECCCCCCccc----------cCccChhhhhhcccCC------CCCCccccchHHhCCcCCEEECcCCcCC
Confidence            66666666666 33          4445566666666666      444112 222345666666666666653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.87  E-value=6.5e-06  Score=86.23  Aligned_cols=158  Identities=20%  Similarity=0.263  Sum_probs=91.0

Q ss_pred             ceeEEEEeeeee--cccccccccccccccccCcccceEEEeeecccceEee--ChHHHHHhcCCCcceeeeccccCCCCc
Q 046380          144 FLVSLTIRHCKI--GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM--DAPRLNYFQCSGIRDFDEAFVYRPDHF  219 (434)
Q Consensus       144 ~L~~L~L~~~~~--~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~--~~l~~~~~~cp~L~~L~l~~~~~~~~~  219 (434)
                      +|++|+++|...  ..|+.       ....-||+|++|.+++      ..+  +++..+..++|+|..|+++++...+..
T Consensus       123 nL~~LdI~G~~~~s~~W~~-------kig~~LPsL~sL~i~~------~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~  189 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPK-------KIGTMLPSLRSLVISG------RQFDNDDFSQLCASFPNLRSLDISGTNISNLS  189 (699)
T ss_pred             hhhhcCccccchhhccHHH-------HHhhhCcccceEEecC------ceecchhHHHHhhccCccceeecCCCCccCcH
Confidence            488888888643  33321       3455899999999998      888  388999999999999999988774321


Q ss_pred             ccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCc
Q 046380          220 CCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDG  299 (434)
Q Consensus       220 ~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~  299 (434)
                                                         .++.++|||.|.+.+-.+...+...-.-.+++|+.|+++.-.+..
T Consensus       190 -----------------------------------GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  190 -----------------------------------GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND  234 (699)
T ss_pred             -----------------------------------HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence                                               245555566555543333221110001123344444444321111


Q ss_pred             ceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeec
Q 046380          300 PVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNS  366 (434)
Q Consensus       300 ~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~  366 (434)
                      ...+                ......-...+++||.|+.+|. ..+.+.+..++..=|+|+.+.+-.
T Consensus       235 ~~~i----------------i~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  235 DTKI----------------IEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHPNLQQIAALD  284 (699)
T ss_pred             chHH----------------HHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCccHhhhhhhh
Confidence            1000                0000011233667777777777 666777777777667777766543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=5.2e-05  Score=69.28  Aligned_cols=227  Identities=14%  Similarity=0.054  Sum_probs=138.7

Q ss_pred             eeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceEee-C--hHHHHHhcCCCcceeeeccccCCCCcc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-D--APRLNYFQCSGIRDFDEAFVYRPDHFC  220 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp~L~~L~l~~~~~~~~~~  220 (434)
                      ++-|.+.+|.++.      .|-. .....+..++.|+|.+      +.+ |  .+..++.+.|.|+.|+++.+.....  
T Consensus        47 ~ellvln~~~id~------~gd~~~~~~~~~~v~elDL~~------N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--  112 (418)
T KOG2982|consen   47 LELLVLNGSIIDN------EGDVMLFGSSVTDVKELDLTG------NLISDWSEIGAILEQLPALTTLNLSCNSLSSD--  112 (418)
T ss_pred             hhhheecCCCCCc------chhHHHHHHHhhhhhhhhccc------chhccHHHHHHHHhcCccceEeeccCCcCCCc--
Confidence            6677788887733      0100 1234678899999999      888 6  7888999999999999998877432  


Q ss_pred             cccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCc--chhhccCccEEEeecCCCC
Q 046380          221 CRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSL--SSAILKKLKLVRMENCRFD  298 (434)
Q Consensus       221 ~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~--~~~~~~~L~~L~l~~c~~l  298 (434)
                            +...-....+|+.|-++|....-......+..+|.++.|+++.|.+..+-..-  ....-+.+++|....|...
T Consensus       113 ------I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~  186 (418)
T KOG2982|consen  113 ------IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ  186 (418)
T ss_pred             ------cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH
Confidence                  12222345589999888877665555667788999999999887432210000  0001224566666666543


Q ss_pred             cceee-----cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccc
Q 046380          299 GPVEI-----HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGH  373 (434)
Q Consensus       299 ~~~~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~  373 (434)
                      .....     -.|+++.+.+..+.....+-......++.+--|.++...--++.++..+- .+|.|..|.+.+++++...
T Consensus       187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln-~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALN-GFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHc-CCchhheeeccCCcccccc
Confidence            33322     37888888876654322222223445555556677655223455666654 8999999999988874311


Q ss_pred             -----ccccccccceeEeccCCcc
Q 046380          374 -----LEIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       374 -----~~~~~~~L~~L~l~~c~~l  392 (434)
                           ....-.+|.++.+-|..++
T Consensus       266 ~~~err~llIaRL~~v~vLNGskI  289 (418)
T KOG2982|consen  266 RGGERRFLLIARLTKVQVLNGSKI  289 (418)
T ss_pred             cCCcceEEEEeeccceEEecCccc
Confidence                 1112235555555555444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.57  E-value=9.7e-07  Score=74.05  Aligned_cols=150  Identities=18%  Similarity=0.179  Sum_probs=91.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      .+++.|.++...        ....|+.+..-.+ |+.|++.++.++.        +|+...+++.|++|+++-      .
T Consensus        33 s~ITrLtLSHNK--------l~~vppnia~l~n-levln~~nnqie~--------lp~~issl~klr~lnvgm------n   89 (264)
T KOG0617|consen   33 SNITRLTLSHNK--------LTVVPPNIAELKN-LEVLNLSNNQIEE--------LPTSISSLPKLRILNVGM------N   89 (264)
T ss_pred             hhhhhhhcccCc--------eeecCCcHHHhhh-hhhhhcccchhhh--------cChhhhhchhhhheecch------h
Confidence            466777777655        6677888777777 9999999888833        357788899999998875      3


Q ss_pred             eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380          191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS  270 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (434)
                      +...+.+=+.++|.||.|++.++...+.       ..+.-.+.+..|+-|.+++.....  ...-+..+++|+.|.+..+
T Consensus        90 rl~~lprgfgs~p~levldltynnl~e~-------~lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen   90 RLNILPRGFGSFPALEVLDLTYNNLNEN-------SLPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             hhhcCccccCCCchhhhhhccccccccc-------cCCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccC
Confidence            3224444567789999999988766321       112222333444444443321110  1112356677777777766


Q ss_pred             ccccCCCCcchhhccCccEEEeec
Q 046380          271 VFGKLPSSLSSAILKKLKLVRMEN  294 (434)
Q Consensus       271 ~~~~~p~~~~~~~~~~L~~L~l~~  294 (434)
                      .+-.+|-  -.+.+.+|+.|.|.+
T Consensus       161 dll~lpk--eig~lt~lrelhiqg  182 (264)
T KOG0617|consen  161 DLLSLPK--EIGDLTRLRELHIQG  182 (264)
T ss_pred             chhhCcH--HHHHHHHHHHHhccc
Confidence            6655553  133455666666655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.54  E-value=3.2e-07  Score=86.54  Aligned_cols=20  Identities=30%  Similarity=0.330  Sum_probs=9.3

Q ss_pred             ccCCCCcEEEeeccccccCC
Q 046380          257 SKFSNLETLKLLSSVFGKLP  276 (434)
Q Consensus       257 ~~~~~L~~L~l~~~~~~~~p  276 (434)
                      +++..|+.|++..+.+..+|
T Consensus       203 g~l~~L~~LyL~~Nki~~lP  222 (565)
T KOG0472|consen  203 GGLESLELLYLRRNKIRFLP  222 (565)
T ss_pred             cchhhhHHHHhhhcccccCC
Confidence            44444444444444444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.52  E-value=1.9e-05  Score=72.15  Aligned_cols=80  Identities=13%  Similarity=0.020  Sum_probs=45.2

Q ss_pred             cccccccccCCCceeEEEEeeeeecccccccccc-cccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeee
Q 046380          132 YALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMG-LTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDE  210 (434)
Q Consensus       132 ~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l  210 (434)
                      +.+...+--|.. |++|..++..-..-..|-.-. ++....-|++|+.+.++.|..      ..+..+...-|.|+.+.+
T Consensus       172 ~d~~hildf~~~-l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~------~~i~~~~~~kptl~t~~v  244 (490)
T KOG1259|consen  172 YDFSHVLDFCTQ-LVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST------ENIVDIELLKPTLQTICV  244 (490)
T ss_pred             cchHHHHHhhhh-eeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch------hheeceeecCchhheeee
Confidence            333333333556 999998875321100000000 122344688899999988531      144555666789999998


Q ss_pred             ccccCCCC
Q 046380          211 AFVYRPDH  218 (434)
Q Consensus       211 ~~~~~~~~  218 (434)
                      .+....+.
T Consensus       245 ~~s~~~~~  252 (490)
T KOG1259|consen  245 HNTTIQDV  252 (490)
T ss_pred             eccccccc
Confidence            88776544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.51  E-value=1.5e-06  Score=72.97  Aligned_cols=155  Identities=15%  Similarity=0.189  Sum_probs=90.1

Q ss_pred             ccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCC
Q 046380          137 VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRP  216 (434)
Q Consensus       137 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~  216 (434)
                      .+|.... ...|.|+.+++..        .||....+.+|+.|++.+      ..+..+..-+++.|.|+.|++.-+...
T Consensus        28 gLf~~s~-ITrLtLSHNKl~~--------vppnia~l~nlevln~~n------nqie~lp~~issl~klr~lnvgmnrl~   92 (264)
T KOG0617|consen   28 GLFNMSN-ITRLTLSHNKLTV--------VPPNIAELKNLEVLNLSN------NQIEELPTSISSLPKLRILNVGMNRLN   92 (264)
T ss_pred             cccchhh-hhhhhcccCceee--------cCCcHHHhhhhhhhhccc------chhhhcChhhhhchhhhheecchhhhh
Confidence            3455555 8889999998833        357888999999999987      555455556778899999988766542


Q ss_pred             CCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCC
Q 046380          217 DHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCR  296 (434)
Q Consensus       217 ~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~  296 (434)
                               ..+......|-|+.|++.....+.......+-.+..|+-|.++++-++.+|..  .+++++|+.|.+...+
T Consensus        93 ---------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d--vg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen   93 ---------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD--VGKLTNLQILSLRDND  161 (264)
T ss_pred             ---------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh--hhhhcceeEEeeccCc
Confidence                     22333345566666666554444433332333445555566666666666542  2344455555444433


Q ss_pred             CCcce-ee-cCCcccEEEecccc
Q 046380          297 FDGPV-EI-HSPNLETFVYKAGH  317 (434)
Q Consensus       297 ~l~~~-~~-~~p~L~~L~l~~~~  317 (434)
                      -++.. ++ ....|++|.+.++.
T Consensus       162 ll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  162 LLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhhCcHHHHHHHHHHHHhcccce
Confidence            22221 12 34455555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.45  E-value=6.8e-05  Score=78.68  Aligned_cols=162  Identities=17%  Similarity=0.154  Sum_probs=96.1

Q ss_pred             CCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcch
Q 046380          202 CSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSS  281 (434)
Q Consensus       202 cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~  281 (434)
                      -.+|++|++++......      ........-+|+|++|.+.+.......+.++..++|||..||++++.+..+-.   .
T Consensus       121 r~nL~~LdI~G~~~~s~------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G---I  191 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSN------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG---I  191 (699)
T ss_pred             HHhhhhcCccccchhhc------cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH---H
Confidence            36788888876443211      11234455688888888888777766677788899999999999887665421   1


Q ss_pred             hhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH-HHHHHH---hcCC
Q 046380          282 AILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK-SLEELI---SACI  357 (434)
Q Consensus       282 ~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~-~l~~l~---~~~p  357 (434)
                      +.+++|+.|.+.+                     -.............+++|+.|+|+.-...... -+...+   ..+|
T Consensus       192 S~LknLq~L~mrn---------------------Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp  250 (699)
T KOG3665|consen  192 SRLKNLQVLSMRN---------------------LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP  250 (699)
T ss_pred             hccccHHHHhccC---------------------CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence            2244444443333                     11110011123456788888888766322222 222222   3699


Q ss_pred             ccceEEeecccccccccc---ccccccceeEeccCCccc
Q 046380          358 LLENLYLNSCAIPKGHLE---IYSLTLKTLVVHGCDHLH  393 (434)
Q Consensus       358 ~Le~L~l~~~~~~~~~~~---~~~~~L~~L~l~~c~~l~  393 (434)
                      +|+.|+.+++.+....++   ...++|+.+..-+|....
T Consensus       251 eLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~~~  289 (699)
T KOG3665|consen  251 ELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLALS  289 (699)
T ss_pred             cccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhccc
Confidence            999999998877332222   245677777766664443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.41  E-value=9.8e-05  Score=66.71  Aligned_cols=131  Identities=19%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             HHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccc--ee-ecCC
Q 046380          252 FESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIAS--FH-FGGR  328 (434)
Q Consensus       252 ~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~-~~~~  328 (434)
                      ....+++..+|+.|.+++|.+..+...-...++.+|-..+         -.-+-|.|+......++....+  .+ ..+.
T Consensus       112 L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK---------Kaa~kp~Le~vicgrNRlengs~~~~a~~l~  182 (388)
T COG5238         112 LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK---------KAADKPKLEVVICGRNRLENGSKELSAALLE  182 (388)
T ss_pred             HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh---------hhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence            3445677777777777777665443211111222221111         0113688888877666532111  11 2334


Q ss_pred             CCCCccEEEEcCccCCcHHHHHHHH----hcCCccceEEeeccccccccc------cccccccceeEeccCCcc
Q 046380          329 GFGNIKTLAVNGFLGLRNKSLEELI----SACILLENLYLNSCAIPKGHL------EIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       329 ~~~~Lk~L~l~~~~~~~~~~l~~l~----~~~p~Le~L~l~~~~~~~~~~------~~~~~~L~~L~l~~c~~l  392 (434)
                      ...+|+++.|..+ ++..+++..++    ..+.+||.|+|+.+.++....      -...+.|+.|.+.+|-.-
T Consensus       183 sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         183 SHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             hhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            5579999999888 77777655443    478999999999987643111      112235888999999543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.20  E-value=0.00047  Score=74.44  Aligned_cols=100  Identities=16%  Similarity=0.118  Sum_probs=56.5

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEe--e-ChHHHHHhcCCCcceeeeccccCCCCcc
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE--M-DAPRLNYFQCSGIRDFDEAFVYRPDHFC  220 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~--~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~  220 (434)
                      .++..+.++.+ ..          +....++.|++|-+..      ..  + .....++...|.|+.|++++|....   
T Consensus       525 ~rr~s~~~~~~~~~----------~~~~~~~~L~tLll~~------n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~---  585 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHI----------AGSSENPKLRTLLLQR------NSDWLLEISGEFFRSLPLLRVLDLSGNSSLS---  585 (889)
T ss_pred             eeEEEEeccchhhc----------cCCCCCCccceEEEee------cchhhhhcCHHHHhhCcceEEEECCCCCccC---
Confidence            66777777666 33          4556777888888887      43  2 2334456778888888888765521   


Q ss_pred             cccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380          221 CRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS  270 (434)
Q Consensus       221 ~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (434)
                           .++.....+-+|++|+++++.+..  ...-+..+..|.+|++...
T Consensus       586 -----~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~  628 (889)
T KOG4658|consen  586 -----KLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVT  628 (889)
T ss_pred             -----cCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccc
Confidence                 122223344455566555544332  1122344455555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.17  E-value=0.00015  Score=68.77  Aligned_cols=84  Identities=14%  Similarity=0.037  Sum_probs=48.8

Q ss_pred             cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH-HHHHHhcCCccceEEeecccccccccc-c-cccc
Q 046380          304 HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS-LEELISACILLENLYLNSCAIPKGHLE-I-YSLT  380 (434)
Q Consensus       304 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~-l~~l~~~~p~Le~L~l~~~~~~~~~~~-~-~~~~  380 (434)
                      ..|+|++++++++..+.- ....+.+...++.|.+..+   ..+. -...+++...|+.|+|.+++++.-... + .-..
T Consensus       272 ~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~eL~L~~N---~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  272 KLPNLRKLNLSNNKITRI-EDGAFEGAAELQELYLTRN---KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             hcccceEeccCCCccchh-hhhhhcchhhhhhhhcCcc---hHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            367788888777663310 0112345566777777666   2222 233456888999999999888442211 1 1236


Q ss_pred             cceeEeccCCc
Q 046380          381 LKTLVVHGCDH  391 (434)
Q Consensus       381 L~~L~l~~c~~  391 (434)
                      |..|.+...+.
T Consensus       348 l~~l~l~~Np~  358 (498)
T KOG4237|consen  348 LSTLNLLSNPF  358 (498)
T ss_pred             eeeeehccCcc
Confidence            77777665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.12  E-value=4e-05  Score=77.77  Aligned_cols=166  Identities=19%  Similarity=0.192  Sum_probs=83.6

Q ss_pred             CCCcccceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeec
Q 046380           77 DFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIG  156 (434)
Q Consensus        77 ~~~~l~~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~  156 (434)
                      .+++...|+   .-.....+...+...-....+-+..+.+.+....     ...+.. |-.+|...+ |++|.|++|.+.
T Consensus        53 ~g~~~~~f~---a~~s~~ads~vl~qLq~i~d~lqkt~~lkl~~~p-----a~~pt~-pi~ifpF~s-Lr~LElrg~~L~  122 (1096)
T KOG1859|consen   53 SGAPVDYFR---AYVSDNADSRVLEQLQRILDFLQKTKVLKLLPSP-----ARDPTE-PISIFPFRS-LRVLELRGCDLS  122 (1096)
T ss_pred             CCCCCceeE---EecCCcccchHHHHHHHHHHHHhhheeeeecccC-----CCCCCC-Cceeccccc-eeeEEecCcchh
Confidence            456677777   3222223333333332221133666677765544     122333 888999999 999999999873


Q ss_pred             ccccccccccccccccC-cccceEEEeeecccceEeeChHHHHHhcCC-----Ccceeee--ccccCCCCcccccccccc
Q 046380          157 AYQKNTVMGLTLSNFFN-PSVRRLVVRGCMALQGFEMDAPRLNYFQCS-----GIRDFDE--AFVYRPDHFCCRFLEFKV  228 (434)
Q Consensus       157 ~~~~~~~~~l~~~~~~~-~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp-----~L~~L~l--~~~~~~~~~~~~~l~~~~  228 (434)
                      .     +.||    ..+ ..|++|--.+       ..+.+..+++.|-     .+.+..|  .+|.      |+.+....
T Consensus       123 ~-----~~GL----~~lr~qLe~LIC~~-------Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fs------yN~L~~mD  180 (1096)
T KOG1859|consen  123 T-----AKGL----QELRHQLEKLICHN-------SLDALRHVFASCGGDISNSPVWNKLATASFS------YNRLVLMD  180 (1096)
T ss_pred             h-----hhhh----HHHHHhhhhhhhhc-------cHHHHHHHHHHhccccccchhhhhHhhhhcc------hhhHHhHH
Confidence            2     1222    222 2466665443       1136777776652     1111111  1111      11111111


Q ss_pred             eeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCC
Q 046380          229 ANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPS  277 (434)
Q Consensus       229 ~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~  277 (434)
                      ....-+|.|++|+++.....+.   ..+..++.|++|+|+.|.+..+|.
T Consensus       181 ~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~  226 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQ  226 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccc
Confidence            1223356666666665443322   256667777777777666665553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.07  E-value=0.00042  Score=74.81  Aligned_cols=41  Identities=17%  Similarity=-0.034  Sum_probs=23.8

Q ss_pred             cccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccC
Q 046380          170 NFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       170 ~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      +..+|.|+.|+|++|...     ..++..++..-+|+.|+++++..
T Consensus       567 f~~m~~LrVLDLs~~~~l-----~~LP~~I~~Li~LryL~L~~t~I  607 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSL-----SKLPSSIGELVHLRYLDLSDTGI  607 (889)
T ss_pred             HhhCcceEEEECCCCCcc-----CcCChHHhhhhhhhcccccCCCc
Confidence            445666777777653111     24555566666666666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.90  E-value=0.00092  Score=60.57  Aligned_cols=112  Identities=16%  Similarity=0.083  Sum_probs=65.3

Q ss_pred             ccCCCCcEEEeeccccccCCCCcchhhc---cCccEEEeecC-C---CCcceee----cCCcccEEEeccccCcccc---
Q 046380          257 SKFSNLETLKLLSSVFGKLPSSLSSAIL---KKLKLVRMENC-R---FDGPVEI----HSPNLETFVYKAGHGEIAS---  322 (434)
Q Consensus       257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~---~~L~~L~l~~c-~---~l~~~~~----~~p~L~~L~l~~~~~~~~~---  322 (434)
                      ..-|.|+......|.+..-|.-..+..|   .+|+.+++... -   .+..+.+    -+.+|+.|++..+..++.+   
T Consensus       154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~  233 (388)
T COG5238         154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY  233 (388)
T ss_pred             ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence            4566677766666655544432222222   26666666542 1   1222221    3788888888876544322   


Q ss_pred             eeecCCCCCCccEEEEcCccCCcHHHHHHHHh-----cCCccceEEeecccc
Q 046380          323 FHFGGRGFGNIKTLAVNGFLGLRNKSLEELIS-----ACILLENLYLNSCAI  369 (434)
Q Consensus       323 ~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~-----~~p~Le~L~l~~~~~  369 (434)
                      +-......++|+.|.+..| -.+.++...+++     ..|+|..|-.+++..
T Consensus       234 La~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         234 LADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             HHHHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            1123456678899999888 556665555543     568888888887765

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.71  E-value=0.0049  Score=60.19  Aligned_cols=53  Identities=19%  Similarity=0.184  Sum_probs=26.6

Q ss_pred             ccCCCCcEEEeeccccccCCCCcchhhcc-CccEEEeecCCCCcceee-cCCcccEEEecc
Q 046380          257 SKFSNLETLKLLSSVFGKLPSSLSSAILK-KLKLVRMENCRFDGPVEI-HSPNLETFVYKA  315 (434)
Q Consensus       257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~-~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~  315 (434)
                      ..+++++.|++++|.+..+|.      ++ +|++|.+.+|.++..+.- -.++|+.|.+.+
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~------LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~  103 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV------LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCH  103 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC------CCCCCcEEEccCCCCcccCCchhhhhhhheEccC
Confidence            334555566666555555552      22 455555555555433322 234555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.67  E-value=0.00087  Score=47.11  Aligned_cols=56  Identities=18%  Similarity=0.163  Sum_probs=32.2

Q ss_pred             eeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEeeC-hHHHHHhcCCCcceeeecccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEMD-APRLNYFQCSGIRDFDEAFVY  214 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~~-~l~~~~~~cp~L~~L~l~~~~  214 (434)
                      |++|++++|.+..        +++ .+.++++|++|++++      ..+. --...+.++|+|++|.+++|.
T Consensus         3 L~~L~l~~n~l~~--------i~~~~f~~l~~L~~L~l~~------N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTE--------IPPDSFSNLPNLETLDLSN------NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESE--------ECTTTTTTGTTESEEEETS------SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCc--------cCHHHHcCCCCCCEeEccC------CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            6677777776522        122 344677777777776      3331 122345667777777776664

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.63  E-value=0.0003  Score=64.50  Aligned_cols=124  Identities=19%  Similarity=0.162  Sum_probs=76.7

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF  223 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~  223 (434)
                      |+.++|+++.+ ..         -.+..-.|.++.|++++      +.+..+.. ++..++|++|+++++.....     
T Consensus       286 LtelDLS~N~I~~i---------DESvKL~Pkir~L~lS~------N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-----  344 (490)
T KOG1259|consen  286 LTELDLSGNLITQI---------DESVKLAPKLRRLILSQ------NRIRTVQN-LAELPQLQLLDLSGNLLAEC-----  344 (490)
T ss_pred             hhhccccccchhhh---------hhhhhhccceeEEeccc------cceeeehh-hhhcccceEeecccchhHhh-----
Confidence            88999999877 22         24556788999999998      44412222 56688999999998876432     


Q ss_pred             ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCC
Q 046380          224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCR  296 (434)
Q Consensus       224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~  296 (434)
                          ......+-|.+.|.+++..+.+-   +-+..+-+|..|++++|.++.+-.--..++++.|+++.+.+.+
T Consensus       345 ----~Gwh~KLGNIKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  345 ----VGWHLKLGNIKTLKLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ----hhhHhhhcCEeeeehhhhhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence                22344566777777765433221   1234555677777887766553221123346667777666643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.0012  Score=60.62  Aligned_cols=121  Identities=17%  Similarity=0.135  Sum_probs=80.2

Q ss_pred             hhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecC-C
Q 046380          250 RTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGG-R  328 (434)
Q Consensus       250 ~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~-~  328 (434)
                      +.+..+-..++.++.|++.+|.+.....                    +..+.-++|.|+.|+++++...  +..... .
T Consensus        61 gd~~~~~~~~~~v~elDL~~N~iSdWse--------------------I~~ile~lP~l~~LNls~N~L~--s~I~~lp~  118 (418)
T KOG2982|consen   61 GDVMLFGSSVTDVKELDLTGNLISDWSE--------------------IGAILEQLPALTTLNLSCNSLS--SDIKSLPL  118 (418)
T ss_pred             hhHHHHHHHhhhhhhhhcccchhccHHH--------------------HHHHHhcCccceEeeccCCcCC--CccccCcc
Confidence            3444455667777777777776544321                    0111115777888888776532  111112 3


Q ss_pred             CCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccc-----cccccccccccceeEeccCCccc
Q 046380          329 GFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIP-----KGHLEIYSLTLKTLVVHGCDHLH  393 (434)
Q Consensus       329 ~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~c~~l~  393 (434)
                      ...||++|.+.|. ++.+..+..++...|.++.|+++.+...     ...++-.++.+++|++..|....
T Consensus       119 p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~  187 (418)
T KOG2982|consen  119 PLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL  187 (418)
T ss_pred             cccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH
Confidence            5679999999998 8999999999999999999999887431     13344456688889988887654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.53  E-value=0.002  Score=45.20  Aligned_cols=57  Identities=21%  Similarity=0.232  Sum_probs=44.7

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEee
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRG  183 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~  183 (434)
                      +++++|++..+.        ...+|...|...++|++|++++|.+..        +++ .+.++++|++|++++
T Consensus         1 p~L~~L~l~~n~--------l~~i~~~~f~~l~~L~~L~l~~N~l~~--------i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    1 PNLESLDLSNNK--------LTEIPPDSFSNLPNLETLDLSNNNLTS--------IPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTESEEEETSST--------ESEECTTTTTTGTTESEEEETSSSESE--------EETTTTTTSTTESEEEETS
T ss_pred             CcCcEEECCCCC--------CCccCHHHHcCCCCCCEeEccCCccCc--------cCHHHHcCCCCCCEEeCcC
Confidence            467888888765        778888888765559999999998822        123 467999999999998

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.32  E-value=0.012  Score=57.53  Aligned_cols=161  Identities=11%  Similarity=0.018  Sum_probs=77.6

Q ss_pred             hcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhc-cCCCCcEEEeecc-ccccCCC
Q 046380          200 FQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALS-KFSNLETLKLLSS-VFGKLPS  277 (434)
Q Consensus       200 ~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~p~  277 (434)
                      ..|+++++|.+++|...         .++   ..-++|++|.++++..-    ..+.. -.++|+.|++++| .+..+|.
T Consensus        49 ~~~~~l~~L~Is~c~L~---------sLP---~LP~sLtsL~Lsnc~nL----tsLP~~LP~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         49 EEARASGRLYIKDCDIE---------SLP---VLPNELTEITIENCNNL----TTLPGSIPEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HHhcCCCEEEeCCCCCc---------ccC---CCCCCCcEEEccCCCCc----ccCCchhhhhhhheEccCccccccccc
Confidence            44677777777777431         111   12235666666553211    00111 1246777777776 5555553


Q ss_pred             CcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcC-
Q 046380          278 SLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISAC-  356 (434)
Q Consensus       278 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~-  356 (434)
                              +|++|.+.. .....+.--.++|+.|.+...... ........--++|++|.+.+|....      +.... 
T Consensus       113 --------sLe~L~L~~-n~~~~L~~LPssLk~L~I~~~n~~-~~~~lp~~LPsSLk~L~Is~c~~i~------LP~~LP  176 (426)
T PRK15386        113 --------SVRSLEIKG-SATDSIKNVPNGLTSLSINSYNPE-NQARIDNLISPSLKTLSLTGCSNII------LPEKLP  176 (426)
T ss_pred             --------ccceEEeCC-CCCcccccCcchHhheeccccccc-cccccccccCCcccEEEecCCCccc------Cccccc
Confidence                    466676643 222222223456777776432100 0000001112578888888773221      11112 


Q ss_pred             CccceEEeeccccc--cccccccccccceeEeccCCccc
Q 046380          357 ILLENLYLNSCAIP--KGHLEIYSLTLKTLVVHGCDHLH  393 (434)
Q Consensus       357 p~Le~L~l~~~~~~--~~~~~~~~~~L~~L~l~~c~~l~  393 (434)
                      ++|+.|+++.+...  .-........+ .|.+.+|..++
T Consensus       177 ~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~  214 (426)
T PRK15386        177 ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS  214 (426)
T ss_pred             ccCcEEEecccccccccCccccccccc-EechhhhcccC
Confidence            47888887765311  11122233456 77777775553

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.17  E-value=0.0019  Score=60.02  Aligned_cols=38  Identities=26%  Similarity=0.484  Sum_probs=35.5

Q ss_pred             CCCCCCCCC----HHHHHHHHcCCChHHHHHHhhhhhhhhhc
Q 046380            3 AIDRISFLP----DDLTHHIMSLLPMKDIARTSILSKRWMSH   40 (434)
Q Consensus         3 ~~D~is~LP----deiL~~I~s~L~~~~~~r~~~vskrW~~l   40 (434)
                      ..|+|+.||    |++-..||+||+..++..+-+|||+|+++
T Consensus        71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            359999999    99999999999999999999999999863

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.58  E-value=0.0093  Score=59.07  Aligned_cols=166  Identities=21%  Similarity=0.207  Sum_probs=82.5

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCc-ccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNP-SVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCR  222 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~-~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~  222 (434)
                      ++.|.+.++.+ +.         ++.....+ +|+.|++++      ..+..+..-+..+|+|+.|.+.+|...+.    
T Consensus       118 l~~L~l~~n~i~~i---------~~~~~~~~~nL~~L~l~~------N~i~~l~~~~~~l~~L~~L~l~~N~l~~l----  178 (394)
T COG4886         118 LTSLDLDNNNITDI---------PPLIGLLKSNLKELDLSD------NKIESLPSPLRNLPNLKNLDLSFNDLSDL----  178 (394)
T ss_pred             eeEEecCCcccccC---------ccccccchhhcccccccc------cchhhhhhhhhccccccccccCCchhhhh----
Confidence            77777777766 33         34445553 788888887      43322223467788888888888877322    


Q ss_pred             cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCc-ce
Q 046380          223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDG-PV  301 (434)
Q Consensus       223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~-~~  301 (434)
                           .......++|+.|.+++....+-..  .+....+|++|.++++.....+..  ...+.++..+.+..-.... ..
T Consensus       179 -----~~~~~~~~~L~~L~ls~N~i~~l~~--~~~~~~~L~~l~~~~N~~~~~~~~--~~~~~~l~~l~l~~n~~~~~~~  249 (394)
T COG4886         179 -----PKLLSNLSNLNNLDLSGNKISDLPP--EIELLSALEELDLSNNSIIELLSS--LSNLKNLSGLELSNNKLEDLPE  249 (394)
T ss_pred             -----hhhhhhhhhhhheeccCCccccCch--hhhhhhhhhhhhhcCCcceecchh--hhhcccccccccCCceeeeccc
Confidence                 2222256666666666554433211  112334466666666632222210  1123333333322211111 01


Q ss_pred             ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380          302 EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF  341 (434)
Q Consensus       302 ~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~  341 (434)
                      .+ ..+++++|+++++...  .+.. .....+++.|.+++.
T Consensus       250 ~~~~l~~l~~L~~s~n~i~--~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         250 SIGNLSNLETLDLSNNQIS--SISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             hhccccccceecccccccc--cccc-ccccCccCEEeccCc
Confidence            11 3555666666665432  1111 344556666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.53  E-value=0.006  Score=60.41  Aligned_cols=176  Identities=17%  Similarity=0.154  Sum_probs=109.9

Q ss_pred             ccccCcccceEEEeeecccceEeeChHHHHHhcC-CCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEe
Q 046380          169 SNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQC-SGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVL  247 (434)
Q Consensus       169 ~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~c-p~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~  247 (434)
                      ....++.++.|.+..      +.+..+....... ++|+.|.++++.....         ......+|+|+.|.+++...
T Consensus       111 ~~~~~~~l~~L~l~~------n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l---------~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886         111 ELLELTNLTSLDLDN------NNITDIPPLIGLLKSNLKELDLSDNKIESL---------PSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             hhhcccceeEEecCC------cccccCccccccchhhcccccccccchhhh---------hhhhhccccccccccCCchh
Confidence            345667899999988      6552334434444 4899999998887321         22356788999998887765


Q ss_pred             CchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCccee-e-cCCcccEEEeccccCcccceee
Q 046380          248 NDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVE-I-HSPNLETFVYKAGHGEIASFHF  325 (434)
Q Consensus       248 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~-~-~~p~L~~L~l~~~~~~~~~~~~  325 (434)
                      .+...  .....++|+.|+++++.+..+|..  .....+|++|.+.+...+..+. + ...++..+.+..+...  .+..
T Consensus       176 ~~l~~--~~~~~~~L~~L~ls~N~i~~l~~~--~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~--~~~~  249 (394)
T COG4886         176 SDLPK--LLSNLSNLNNLDLSGNKISDLPPE--IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE--DLPE  249 (394)
T ss_pred             hhhhh--hhhhhhhhhheeccCCccccCchh--hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee--eccc
Confidence            54322  123788999999999998888752  1234458888877754333222 2 4566666664443322  1123


Q ss_pred             cCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          326 GGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       326 ~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ......++++|.+.++. ++.-  .. +....+|+.|++++...
T Consensus       250 ~~~~l~~l~~L~~s~n~-i~~i--~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         250 SIGNLSNLETLDLSNNQ-ISSI--SS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             hhccccccceecccccc-cccc--cc-ccccCccCEEeccCccc
Confidence            34566678888887772 2222  11 45778888888887655

>PLN03150 hypothetical protein; Provisional

Probab=95.17  E-value=0.021  Score=60.00  Aligned_cols=40  Identities=18%  Similarity=0.340  Sum_probs=24.4

Q ss_pred             HhccCCCCcEEEeeccccc-cCCCCcchhhccCccEEEeecC
Q 046380          255 ALSKFSNLETLKLLSSVFG-KLPSSLSSAILKKLKLVRMENC  295 (434)
Q Consensus       255 ~~~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~c  295 (434)
                      .+..+++|+.|++++|.+. .+|..+ ...+.++..+++.++
T Consensus       485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N  525 (623)
T PLN03150        485 SLGQLTSLRILNLNGNSLSGRVPAAL-GGRLLHRASFNFTDN  525 (623)
T ss_pred             HHhcCCCCCEEECcCCcccccCChHH-hhccccCceEEecCC
Confidence            4567888888888888765 356432 122335556666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.64  E-value=0.032  Score=36.22  Aligned_cols=35  Identities=3%  Similarity=-0.046  Sum_probs=15.6

Q ss_pred             ccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccC
Q 046380          175 SVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       175 ~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      +|++|++++      ..+..+...++++|+|+.|.+++|..
T Consensus         2 ~L~~L~l~~------N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSN------NQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETS------SS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccC------CCCcccCchHhCCCCCCEEEecCCCC
Confidence            455555555      33312233344555555555555544

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.57  E-value=0.01  Score=53.65  Aligned_cols=100  Identities=19%  Similarity=0.155  Sum_probs=48.3

Q ss_pred             cCCCCcEEEeecccccc---CCCCcchhhccCccEEEeecC-----CCCcceeecCCcccEEEeccccCcccceeecCCC
Q 046380          258 KFSNLETLKLLSSVFGK---LPSSLSSAILKKLKLVRMENC-----RFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRG  329 (434)
Q Consensus       258 ~~~~L~~L~l~~~~~~~---~p~~~~~~~~~~L~~L~l~~c-----~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~  329 (434)
                      .+.+|+.|++.++.++.   +|.      +++||+|.++..     ..+..+...+|+|+++.+++++..+-+.......
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~------Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPK------LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             cccchhhhhhhccceeecccCCC------cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            34455555555443322   342      556666666542     1122222245777777766665443222233445


Q ss_pred             CCCccEEEEcCccCCc-HHHHHHHHhcCCccceEE
Q 046380          330 FGNIKTLAVNGFLGLR-NKSLEELISACILLENLY  363 (434)
Q Consensus       330 ~~~Lk~L~l~~~~~~~-~~~l~~l~~~~p~Le~L~  363 (434)
                      +.||++|.+.+|.... +..-..++.-+|+|+.|+
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            5666666666663111 112233344455565555

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.52  E-value=0.015  Score=53.74  Aligned_cols=35  Identities=23%  Similarity=0.479  Sum_probs=30.3

Q ss_pred             CCCCCCCHHHHHHHHcC-----CChHHHHHHhhhhhhhhh
Q 046380            5 DRISFLPDDLTHHIMSL-----LPMKDIARTSILSKRWMS   39 (434)
Q Consensus         5 D~is~LPdeiL~~I~s~-----L~~~~~~r~~~vskrW~~   39 (434)
                      +-|+.||||||..||..     |+.+++.++++|||.|+.
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            44789999999999975     456999999999999975

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.44  E-value=0.031  Score=54.02  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             CCCCCHHHHHHHHcCCC-hHHHHHHhhhhhhhhhcc
Q 046380            7 ISFLPDDLTHHIMSLLP-MKDIARTSILSKRWMSHW   41 (434)
Q Consensus         7 is~LPdeiL~~I~s~L~-~~~~~r~~~vskrW~~lw   41 (434)
                      .++||+|+|..|..+|+ .-|++|.+.|||.||.-.
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~   39 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSV   39 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhc
Confidence            68999999999999995 689999999999999844

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=94.41  E-value=0.0027  Score=60.54  Aligned_cols=226  Identities=14%  Similarity=0.041  Sum_probs=119.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +...+|++.-..        ...+|+.+|...++|++|+|+++.++.        |. ..+.++++|.+|.+-+..+.+.
T Consensus        67 ~~tveirLdqN~--------I~~iP~~aF~~l~~LRrLdLS~N~Is~--------I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   67 PETVEIRLDQNQ--------ISSIPPGAFKTLHRLRRLDLSKNNISF--------IAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             CcceEEEeccCC--------cccCChhhccchhhhceecccccchhh--------cChHhhhhhHhhhHHHhhcCCchhh
Confidence            577788887655        788999999886669999999998722        11 2344777777776665322211


Q ss_pred             -------------------EeeC-hHHHHHhcCCCcceeeeccccCCCCcc----------------------ccc----
Q 046380          190 -------------------FEMD-APRLNYFQCSGIRDFDEAFVYRPDHFC----------------------CRF----  223 (434)
Q Consensus       190 -------------------~~~~-~l~~~~~~cp~L~~L~l~~~~~~~~~~----------------------~~~----  223 (434)
                                         .+++ ..+..+...|+|..|.+.++..-....                      |..    
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla  210 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA  210 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh
Confidence                               1111 223344555777777776665421100                      110    


Q ss_pred             --cc----ccceeeccCC------------------ceeEE--EEE-eEEeCchhHHHHhccCCCCcEEEeeccccccCC
Q 046380          224 --LE----FKVANENSMS------------------SLETL--VFS-FMVLNDRTFESALSKFSNLETLKLLSSVFGKLP  276 (434)
Q Consensus       224 --l~----~~~~~~~~~p------------------~L~~L--~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p  276 (434)
                        +.    +........|                  +++.+  .++ .+......-..-+..+++|+.|++++|.++.+.
T Consensus       211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~  290 (498)
T KOG4237|consen  211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE  290 (498)
T ss_pred             hHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence              00    0000000000                  01111  000 111111112334678899999999999887764


Q ss_pred             CCcchhhccCccEEEeecCC--CCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCcc---CCcHHHHH
Q 046380          277 SSLSSAILKKLKLVRMENCR--FDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFL---GLRNKSLE  350 (434)
Q Consensus       277 ~~~~~~~~~~L~~L~l~~c~--~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~---~~~~~~l~  350 (434)
                      .+. ......++.|.+....  .++.-.+ ....|++|++++++.+. -.+..+.....|.+|.+-++.   +....++.
T Consensus       291 ~~a-Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~-~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~  368 (498)
T KOG4237|consen  291 DGA-FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT-VAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLG  368 (498)
T ss_pred             hhh-hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE-EecccccccceeeeeehccCcccCccchHHHH
Confidence            321 1223355555555421  1222223 57888899999887441 123456677788888886553   23334555


Q ss_pred             HHHh
Q 046380          351 ELIS  354 (434)
Q Consensus       351 ~l~~  354 (434)
                      ..++
T Consensus       369 ~Wlr  372 (498)
T KOG4237|consen  369 EWLR  372 (498)
T ss_pred             HHHh
Confidence            5554

>PLN03150 hypothetical protein; Provisional

Probab=94.38  E-value=0.032  Score=58.68  Aligned_cols=106  Identities=8%  Similarity=0.013  Sum_probs=73.1

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF  223 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~  223 (434)
                      ++.|+|.++.+..       .+|+....+++|+.|+|++      +.+ ..+...+..+++|+.|++++|.....     
T Consensus       420 v~~L~L~~n~L~g-------~ip~~i~~L~~L~~L~Ls~------N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-----  481 (623)
T PLN03150        420 IDGLGLDNQGLRG-------FIPNDISKLRHLQSINLSG------NSIRGNIPPSLGSITSLEVLDLSYNSFNGS-----  481 (623)
T ss_pred             EEEEECCCCCccc-------cCCHHHhCCCCCCEEECCC------CcccCcCChHHhCCCCCCEEECCCCCCCCC-----
Confidence            7888998887721       1345677899999999998      555 45666678899999999999977321     


Q ss_pred             ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccc
Q 046380          224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSV  271 (434)
Q Consensus       224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  271 (434)
                         ++.....+++|+.|+++++......-..+.....++..+++.+|.
T Consensus       482 ---iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        482 ---IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ---CchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence               233345788999999987765543222222234566778887763

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.34  E-value=0.012  Score=53.27  Aligned_cols=86  Identities=17%  Similarity=0.285  Sum_probs=61.2

Q ss_pred             hccCccEEEeecCCCCcceee-cCCcccEEEeccccCcc-cceeecCCCCCCccEEEEcCccCCcH-HHHHHHHhcCCcc
Q 046380          283 ILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEI-ASFHFGGRGFGNIKTLAVNGFLGLRN-KSLEELISACILL  359 (434)
Q Consensus       283 ~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~-~~~~~~~~~~~~Lk~L~l~~~~~~~~-~~l~~l~~~~p~L  359 (434)
                      .+..|+.|.+.++...+...+ .+|+|++|.++.++... .++......+++|++|.++++ .+.+ ..+..+ +..++|
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl-~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPL-KELENL  118 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchh-hhhcch
Confidence            366788888888766666666 78999999999885332 234444566799999999998 4443 333333 477889


Q ss_pred             ceEEeeccccc
Q 046380          360 ENLYLNSCAIP  370 (434)
Q Consensus       360 e~L~l~~~~~~  370 (434)
                      ..|++.+|..+
T Consensus       119 ~~Ldl~n~~~~  129 (260)
T KOG2739|consen  119 KSLDLFNCSVT  129 (260)
T ss_pred             hhhhcccCCcc
Confidence            99999999863

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.23  E-value=0.063  Score=30.40  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=20.3

Q ss_pred             ccceEEEeeecccceEee-C--hHHHHHhcCC
Q 046380          175 SVRRLVVRGCMALQGFEM-D--APRLNYFQCS  203 (434)
Q Consensus       175 ~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp  203 (434)
                      +||+|+|..      +.+ +  .++.++++||
T Consensus         1 sLKtL~L~~------v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDS------VVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeE------EEECChhHHHHhhccCc
Confidence            589999999      888 4  7999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=92.68  E-value=0.0039  Score=62.18  Aligned_cols=155  Identities=15%  Similarity=0.141  Sum_probs=85.8

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDE  210 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l  210 (434)
                      ...+|..+..+.. |+.+.|..+.+..        +|+...++..|+.|+|+.      ..+..+..-+..|| |+.|.+
T Consensus        87 ~~elp~~~~~f~~-Le~liLy~n~~r~--------ip~~i~~L~~lt~l~ls~------NqlS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   87 FSELPEEACAFVS-LESLILYHNCIRT--------IPEAICNLEALTFLDLSS------NQLSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cccCchHHHHHHH-HHHHHHHhcccee--------cchhhhhhhHHHHhhhcc------chhhcCChhhhcCc-ceeEEE
Confidence            4455555444445 7777777766633        346667888888888887      43322333333444 777877


Q ss_pred             ccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEE
Q 046380          211 AFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLV  290 (434)
Q Consensus       211 ~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L  290 (434)
                      +++....         ++.-....+.|..|+.+.+..  .+....+.++..|+.|.+..+.+..+|.-     +..|.-.
T Consensus       151 sNNkl~~---------lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~l~~lp~E-----l~~LpLi  214 (722)
T KOG0532|consen  151 SNNKLTS---------LPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNHLEDLPEE-----LCSLPLI  214 (722)
T ss_pred             ecCcccc---------CCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhhhhhCCHH-----HhCCcee
Confidence            7776521         122222556666666654432  22333456777777788877777776642     2233333


Q ss_pred             Eee-cCCCCcceee---cCCcccEEEecccc
Q 046380          291 RME-NCRFDGPVEI---HSPNLETFVYKAGH  317 (434)
Q Consensus       291 ~l~-~c~~l~~~~~---~~p~L~~L~l~~~~  317 (434)
                      .++ .|..+..+.+   ++..|++|.+..+.
T Consensus       215 ~lDfScNkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  215 RLDFSCNKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             eeecccCceeecchhhhhhhhheeeeeccCC
Confidence            333 2445544444   45566666665543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.64  E-value=0.048  Score=47.56  Aligned_cols=69  Identities=16%  Similarity=0.070  Sum_probs=46.9

Q ss_pred             ccccccccCCCceeEEEEeeeee---cccccccccccccccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcce
Q 046380          133 ALPRVIFSSGSFLVSLTIRHCKI---GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRD  207 (434)
Q Consensus       133 ~lp~~~~~~~~~L~~L~L~~~~~---~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~  207 (434)
                      .+|..-...-. ++.++=+++.+   +.          ....++++++.|.+.+|     -++ | .++.+-.-.|+|+.
T Consensus        92 ~lp~~~~~~~~-IeaVDAsds~I~~eGl----------e~L~~l~~i~~l~l~~c-----k~~dD~~L~~l~~~~~~L~~  155 (221)
T KOG3864|consen   92 SLPGPNADNVK-IEAVDASDSSIMYEGL----------EHLRDLRSIKSLSLANC-----KYFDDWCLERLGGLAPSLQD  155 (221)
T ss_pred             cCCCCCCCcce-EEEEecCCchHHHHHH----------HHHhccchhhhheeccc-----cchhhHHHHHhcccccchhe
Confidence            55554444444 77777777655   22          45667888888888885     333 5 77777777888888


Q ss_pred             eeeccccCCC
Q 046380          208 FDEAFVYRPD  217 (434)
Q Consensus       208 L~l~~~~~~~  217 (434)
                      |.+++|...+
T Consensus       156 L~lsgC~rIT  165 (221)
T KOG3864|consen  156 LDLSGCPRIT  165 (221)
T ss_pred             eeccCCCeec
Confidence            8888887643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=92.62  E-value=0.07  Score=34.58  Aligned_cols=30  Identities=17%  Similarity=0.148  Sum_probs=22.7

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCcccceEEEee
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRG  183 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~  183 (434)
                      |++|+++++.+ +.         ++....+++|+.|++++
T Consensus         3 L~~L~l~~N~i~~l---------~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    3 LEELDLSNNQITDL---------PPELSNLPNLETLNLSN   33 (44)
T ss_dssp             -SEEEETSSS-SSH---------GGHGTTCTTSSEEEETS
T ss_pred             ceEEEccCCCCccc---------CchHhCCCCCCEEEecC
Confidence            88999999888 44         34478899999999988

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.38  E-value=0.17  Score=44.21  Aligned_cols=86  Identities=14%  Similarity=0.141  Sum_probs=60.2

Q ss_pred             ceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEee-C--hHHHHHhcCCCcceeeeccccCCCCc
Q 046380          144 FLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D--APRLNYFQCSGIRDFDEAFVYRPDHF  219 (434)
Q Consensus       144 ~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp~L~~L~l~~~~~~~~~  219 (434)
                      +|.+|.|.++.+ ++.        |.....+|+|+.|.|.+      ..+ .  ++.. ++.||.|+.|.+-++...+..
T Consensus        65 rL~tLll~nNrIt~I~--------p~L~~~~p~l~~L~Ltn------Nsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~  129 (233)
T KOG1644|consen   65 RLHTLLLNNNRITRID--------PDLDTFLPNLKTLILTN------NSIQELGDLDP-LASCPKLEYLTLLGNPVEHKK  129 (233)
T ss_pred             ccceEEecCCcceeec--------cchhhhccccceEEecC------cchhhhhhcch-hccCCccceeeecCCchhccc
Confidence            399999999887 331        12345789999999998      655 2  3333 567999999999998875432


Q ss_pred             ccccccccceeeccCCceeEEEEEeEEeCc
Q 046380          220 CCRFLEFKVANENSMSSLETLVFSFMVLND  249 (434)
Q Consensus       220 ~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~  249 (434)
                      .     ....+....|+|+.|++.+....+
T Consensus       130 ~-----YR~yvl~klp~l~~LDF~kVt~~E  154 (233)
T KOG1644|consen  130 N-----YRLYVLYKLPSLRTLDFQKVTRKE  154 (233)
T ss_pred             C-----ceeEEEEecCcceEeehhhhhHHH
Confidence            2     123455678999999888765443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=92.36  E-value=0.14  Score=28.94  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=20.2

Q ss_pred             CCCccEEEEcCccCCcHHHHHHHHh
Q 046380          330 FGNIKTLAVNGFLGLRNKSLEELIS  354 (434)
Q Consensus       330 ~~~Lk~L~l~~~~~~~~~~l~~l~~  354 (434)
                      |++|++|++++|..+++.++..+.+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            5788889999988888888877653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.78  E-value=0.04  Score=48.05  Aligned_cols=67  Identities=22%  Similarity=0.224  Sum_probs=44.3

Q ss_pred             CCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccc-cccccc--ccccceeEeccCCccc
Q 046380          327 GRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPK-GHLEIY--SLTLKTLVVHGCDHLH  393 (434)
Q Consensus       327 ~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~-~~~~~~--~~~L~~L~l~~c~~l~  393 (434)
                      +..++.|++|.+.+|..+.+..+..+..-+|+||.|+|++|.-.+ ..+...  ..+|+.|.+.+-+.+.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence            455667777788888777777777777777888888888776422 222221  3466667766665554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.86  E-value=0.029  Score=56.04  Aligned_cols=103  Identities=17%  Similarity=0.086  Sum_probs=58.5

Q ss_pred             eeEEEEeeeee-cccccccccccccc-cccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCR  222 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~  222 (434)
                      |+.|.+.++.+ ..          .. ...+++|++|++++      ..+..+.. +..++.|+.|.+.+|.+...... 
T Consensus        97 l~~l~l~~n~i~~i----------~~~l~~~~~L~~L~ls~------N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~~-  158 (414)
T KOG0531|consen   97 LEALDLYDNKIEKI----------ENLLSSLVNLQVLDLSF------NKITKLEG-LSTLTLLKELNLSGNLISDISGL-  158 (414)
T ss_pred             eeeeeccccchhhc----------ccchhhhhcchheeccc------cccccccc-hhhccchhhheeccCcchhccCC-
Confidence            77778877777 33          33 56778888888877      55411111 22344578888877776433221 


Q ss_pred             cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccC
Q 046380          223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKL  275 (434)
Q Consensus       223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  275 (434)
                               -.+++|+.+.+++.......... ...+.+++.+.+.++.+..+
T Consensus       159 ---------~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  159 ---------ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             ---------ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence                     11566666666655443322111 35667777777776655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.17  E-value=0.027  Score=51.55  Aligned_cols=80  Identities=16%  Similarity=0.155  Sum_probs=49.0

Q ss_pred             cCccEEEeecCCCCcceee--cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceE
Q 046380          285 KKLKLVRMENCRFDGPVEI--HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENL  362 (434)
Q Consensus       285 ~~L~~L~l~~c~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L  362 (434)
                      .+.++|+.-+|. +..+.+  .+|.||.|.++-+.++  ++ ..+..|++|+.|.+..+ .+.+-.=...++++|+|+.|
T Consensus        19 ~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIs--sL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKIS--SL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccc--cc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence            345555555543 444555  5888888888776533  22 23567888888888766 23333333445688888888


Q ss_pred             Eeecccc
Q 046380          363 YLNSCAI  369 (434)
Q Consensus       363 ~l~~~~~  369 (434)
                      -|..++-
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            8877553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.37  E-value=0.045  Score=50.14  Aligned_cols=54  Identities=13%  Similarity=-0.037  Sum_probs=40.7

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEee-C--hHHHHHhcCCCcceeeeccccC
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D--APRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      |++|.|+-+++ ..          .....|.+|++|.|..      +.+ +  .+. -+.+.|+|+.|-|..+..
T Consensus        43 lEVLsLSvNkIssL----------~pl~rCtrLkElYLRk------N~I~sldEL~-YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   43 LEVLSLSVNKISSL----------APLQRCTRLKELYLRK------NCIESLDELE-YLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             ceeEEeeccccccc----------hhHHHHHHHHHHHHHh------cccccHHHHH-HHhcCchhhhHhhccCCc
Confidence            88888888877 33          5567888999999988      666 4  333 367788999888887766

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=89.21  E-value=0.18  Score=51.82  Aligned_cols=38  Identities=29%  Similarity=0.549  Sum_probs=35.5

Q ss_pred             CCCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhc
Q 046380            3 AIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSH   40 (434)
Q Consensus         3 ~~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~l   40 (434)
                      ..|+|+.||-|+..+||++|+.++++++++||+.|+.+
T Consensus       104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            45999999999999999999999999999999999854

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.18  E-value=0.22  Score=25.01  Aligned_cols=17  Identities=41%  Similarity=0.587  Sum_probs=8.3

Q ss_pred             CCCcEEEeeccccccCC
Q 046380          260 SNLETLKLLSSVFGKLP  276 (434)
Q Consensus       260 ~~L~~L~l~~~~~~~~p  276 (434)
                      ++|+.|++++|.++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            46677777766655544

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=88.92  E-value=0.29  Score=42.91  Aligned_cols=86  Identities=19%  Similarity=0.269  Sum_probs=53.1

Q ss_pred             HhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCC--Ccce-ee-cCCcccEEEeccccCccc-cee-ecCC
Q 046380          255 ALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRF--DGPV-EI-HSPNLETFVYKAGHGEIA-SFH-FGGR  328 (434)
Q Consensus       255 ~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~--l~~~-~~-~~p~L~~L~l~~~~~~~~-~~~-~~~~  328 (434)
                      .+.+++.|.+|.+..|.++.+... ....+++|+.|.+.+..-  +..+ .+ .||+|++|.+-++.+..- ... ....
T Consensus        59 ~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~  137 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY  137 (233)
T ss_pred             cCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence            457788888888888888776331 244577788888877432  2222 22 578888888777654321 111 1234


Q ss_pred             CCCCccEEEEcCc
Q 046380          329 GFGNIKTLAVNGF  341 (434)
Q Consensus       329 ~~~~Lk~L~l~~~  341 (434)
                      .+++|+.|+..+.
T Consensus       138 klp~l~~LDF~kV  150 (233)
T KOG1644|consen  138 KLPSLRTLDFQKV  150 (233)
T ss_pred             ecCcceEeehhhh
Confidence            5677777777666

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=88.53  E-value=0.083  Score=52.74  Aligned_cols=105  Identities=13%  Similarity=0.051  Sum_probs=49.3

Q ss_pred             cccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCc
Q 046380          170 NFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLND  249 (434)
Q Consensus       170 ~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~  249 (434)
                      ...+.+|+.|++..      ..+..+...+..+++|+.|+++++.+.....          .-.++.|+.|++.+..+..
T Consensus        91 l~~~~~l~~l~l~~------n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~----------l~~l~~L~~L~l~~N~i~~  154 (414)
T KOG0531|consen   91 LSKLKSLEALDLYD------NKIEKIENLLSSLVNLQVLDLSFNKITKLEG----------LSTLTLLKELNLSGNLISD  154 (414)
T ss_pred             cccccceeeeeccc------cchhhcccchhhhhcchheeccccccccccc----------hhhccchhhheeccCcchh
Confidence            44556666666665      3331222224456666666666666543322          1123336666555544332


Q ss_pred             hhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec
Q 046380          250 RTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN  294 (434)
Q Consensus       250 ~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~  294 (434)
                      ..   .+..+++|+.++++++.+..++... ...+.+++.+.+.+
T Consensus       155 ~~---~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  155 IS---GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGG  195 (414)
T ss_pred             cc---CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccC
Confidence            11   2233566666666666555443200 12344445444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=87.71  E-value=0.014  Score=60.03  Aligned_cols=107  Identities=13%  Similarity=0.076  Sum_probs=58.5

Q ss_pred             ccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeC
Q 046380          169 SNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLN  248 (434)
Q Consensus       169 ~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~  248 (434)
                      ...-++.|+.|+|++      +++..+ +.+..||.|++|+|++|....+         +.+....-.|..|.+.+...+
T Consensus       182 SLqll~ale~LnLsh------Nk~~~v-~~Lr~l~~LkhLDlsyN~L~~v---------p~l~~~gc~L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSH------NKFTKV-DNLRRLPKLKHLDLSYNCLRHV---------PQLSMVGCKLQLLNLRNNALT  245 (1096)
T ss_pred             HHHHHHHhhhhccch------hhhhhh-HHHHhcccccccccccchhccc---------cccchhhhhheeeeecccHHH
Confidence            455677888888887      555111 1456688888888887766322         222233333666666654332


Q ss_pred             chhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec
Q 046380          249 DRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN  294 (434)
Q Consensus       249 ~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~  294 (434)
                      .-   .-+..+.+|+.|+++.|.+.+.........+..|+.|.+.+
T Consensus       246 tL---~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG  288 (1096)
T KOG1859|consen  246 TL---RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG  288 (1096)
T ss_pred             hh---hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence            21   12456677777777777554422111122344556666555

>PF13013 F-box-like_2: F-box-like domain

Probab=87.13  E-value=0.63  Score=36.69  Aligned_cols=30  Identities=17%  Similarity=0.051  Sum_probs=26.8

Q ss_pred             CCCCCCHHHHHHHHcCCChHHHHHHhhhhh
Q 046380            6 RISFLPDDLTHHIMSLLPMKDIARTSILSK   35 (434)
Q Consensus         6 ~is~LPdeiL~~I~s~L~~~~~~r~~~vsk   35 (434)
                      .+.+||+||+..||.+-...+...+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            367899999999999999999988887777

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=83.10  E-value=1.5  Score=29.38  Aligned_cols=35  Identities=17%  Similarity=0.401  Sum_probs=30.0

Q ss_pred             CCccEEEEcCccCCcHH--HHHHHHhcCCccceEEee
Q 046380          331 GNIKTLAVNGFLGLRNK--SLEELISACILLENLYLN  365 (434)
Q Consensus       331 ~~Lk~L~l~~~~~~~~~--~l~~l~~~~p~Le~L~l~  365 (434)
                      .+|+.+.+.++.|...+  .+.+++++++.||++.|.
T Consensus        14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen   14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            68999999998776665  678999999999999875

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=82.71  E-value=0.63  Score=24.97  Aligned_cols=17  Identities=41%  Similarity=0.561  Sum_probs=13.3

Q ss_pred             CCcEEEeeccccccCCC
Q 046380          261 NLETLKLLSSVFGKLPS  277 (434)
Q Consensus       261 ~L~~L~l~~~~~~~~p~  277 (434)
                      +|+.|++++|.++.+|.
T Consensus         1 ~L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             TESEEEETSSEESEEGT
T ss_pred             CccEEECCCCcCEeCCh
Confidence            57888888888877775

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.11  E-value=1.5  Score=23.95  Aligned_cols=21  Identities=19%  Similarity=0.332  Sum_probs=11.9

Q ss_pred             CCccEEEEcCccCCcHHHHHHH
Q 046380          331 GNIKTLAVNGFLGLRNKSLEEL  352 (434)
Q Consensus       331 ~~Lk~L~l~~~~~~~~~~l~~l  352 (434)
                      ++|++|+|+++ .++++++..+
T Consensus         2 ~~L~~L~l~~n-~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNN-QITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSS-BEHHHHHHHH
T ss_pred             CCCCEEEccCC-cCCHHHHHHh
Confidence            56667777666 4666666554

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=81.07  E-value=0.37  Score=48.62  Aligned_cols=137  Identities=18%  Similarity=0.169  Sum_probs=85.1

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDE  210 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l  210 (434)
                      ...+|..++.+ . |+.|-++++++..        +|+..+..+.|..|+.+.      +.+..+..-+.+...|+.|.+
T Consensus       133 lS~lp~~lC~l-p-Lkvli~sNNkl~~--------lp~~ig~~~tl~~ld~s~------nei~slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  133 LSHLPDGLCDL-P-LKVLIVSNNKLTS--------LPEEIGLLPTLAHLDVSK------NEIQSLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             hhcCChhhhcC-c-ceeEEEecCcccc--------CCcccccchhHHHhhhhh------hhhhhchHHhhhHHHHHHHHH
Confidence            55666665443 5 8999999998833        356677889999999988      433234444556778888888


Q ss_pred             ccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcch-hhccCccE
Q 046380          211 AFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSS-AILKKLKL  289 (434)
Q Consensus       211 ~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~-~~~~~L~~  289 (434)
                      ..+...+...          ....-.|.+|+++...+....+  -+..+..|++|.|.+|.++.=|..+-. +..-=.|+
T Consensus       197 rRn~l~~lp~----------El~~LpLi~lDfScNkis~iPv--~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy  264 (722)
T KOG0532|consen  197 RRNHLEDLPE----------ELCSLPLIRLDFSCNKISYLPV--DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKY  264 (722)
T ss_pred             hhhhhhhCCH----------HHhCCceeeeecccCceeecch--hhhhhhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence            8877643211          1123357777777655543332  357788899999998877664431100 01112455


Q ss_pred             EEeecC
Q 046380          290 VRMENC  295 (434)
Q Consensus       290 L~l~~c  295 (434)
                      |++..|
T Consensus       265 L~~qA~  270 (722)
T KOG0532|consen  265 LSTQAC  270 (722)
T ss_pred             ecchhc
Confidence            666666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	434
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 67/476 (14%), Positives = 129/476 (27%), Gaps = 137/476 (28%)

Query: 2   EAIDRISFLPDDL--THHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRE 59
           E ID I    D +  T  +   L  K   +  ++ ++++   L       +  +     +
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMV-QKFVEEVL-----RINYKFLMSPIK 99

Query: 60  SCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLD-- 117
           +      E  + S+  R +   ++     Y+      K+ ++R      LR  L +L   
Sbjct: 100 T------EQRQPSMMTRMYIEQRD---RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 118 ----LHVRDHVG----------NSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTV 163
               +      G            +C  Y +         F   L +++C        TV
Sbjct: 151 KNVLID-----GVLGSGKTWVALDVCLSYKVQCK-MDFKIFW--LNLKNCN----SPETV 198

Query: 164 --MGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAF-----VYRP 216
             M   L    +P+                     L     S  + ++        V   
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENCLLVLLNVQNA 256

Query: 217 DH-----FCCRFL----EFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL 267
                    C+ L      +V +   +S+  T   S +  +  T           E   L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHIS-LDHHSMTLTPD-------EVKSL 306

Query: 268 LSSVFGKLPSSLSSAILK----KLKLV----RMENCRFDGPVEIHSPNLETFVYKAGHGE 319
           L       P  L   +L     +L ++    R     +D                     
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--------------------- 345

Query: 320 IASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCA-------IPKG 372
                       N K +  +    +   SL  L  A      ++ +  +       IP  
Sbjct: 346 ------------NWKHVNCDKLTTIIESSLNVLEPA--EYRKMF-DRLSVFPPSAHIPTI 390

Query: 373 HLEIYSLTLKT----LVVHGCDHLHFAEIQAPQL------LYFQYVGQLENFPTLN 418
            L +    +      +VV+        E Q  +       +Y +   +LEN   L+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 48/320 (15%), Positives = 93/320 (29%), Gaps = 122/320 (38%)

Query: 11  PDDLTHHIMSLLPMKDIARTSILSKRWMSHW----------------LCFPVQE------ 48
           P DL   +++  P + ++  +   +  ++ W                    V E      
Sbjct: 315 PQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 49  -------FDES-----------WFKGRRESCGRDFHEYLRRSLARRDFDNMQELKIITYS 90
                  F  S           WF   +       ++  + SL  +      E  I   S
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK---ESTISIPS 430

Query: 91  QIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTI 150
              +    L               +  LH       S+ DHY +P+              
Sbjct: 431 IYLELKVKL-------------ENEYALH------RSIVDHYNIPK-------------- 457

Query: 151 RHCKIGAYQKNTVMGLTLSN-FFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFD 209
                  +  + ++   L   F++     L            M   R+ +       DF 
Sbjct: 458 ------TFDSDDLIPPYLDQYFYSHIGHHLK----NIEHPERMTLFRMVFL------DF- 500

Query: 210 EAFVYRPDHFCCRFLEFKVANENS--------MSSLETLVF--SFMVLNDRTFE---SAL 256
                       RFLE K+ ++++        +++L+ L F   ++  ND  +E   +A+
Sbjct: 501 ------------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 257 SKFS-NLETLKLLSSVFGKL 275
             F   +E   L+ S +  L
Sbjct: 549 LDFLPKIEE-NLICSKYTDL 567

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 62/420 (14%), Positives = 119/420 (28%), Gaps = 84/420 (20%)

Query: 7   ISFLPDDLTHHIMSLLP-MKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDF 65
                DD+   +M+ +   KD    S++ +RW             +S    R        
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI----------DSE--TREHVTMALC 60

Query: 66  HEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVG 125
           +      L+RR F N++ LK                       L+GK +    ++     
Sbjct: 61  YTATPDRLSRR-FPNLRSLK-----------------------LKGKPRAAMFNLIPENW 96

Query: 126 NSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGC 184
                       I ++   L S+  R   +      + + L  L+      +  L +  C
Sbjct: 97  GGYVTP--WVTEISNNLRQLKSVHFRRMIV------SDLDLDRLAKARADDLETLKLDKC 148

Query: 185 -----MALQGFEMDAPRLNYF---QCSGIRDFDEAFVYRPDHFCCRFLE---------FK 227
                  L        ++      + S      +       H     LE          K
Sbjct: 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH--NTSLEVLNFYMTEFAK 206

Query: 228 VANE------NSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSS 281
           ++ +       +  SL ++      +            +NLE     S            
Sbjct: 207 ISPKDLETIARNCRSLVSVKVGDFEI--LELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264

Query: 282 AILKKLKLVRMENCRFDGPVEI-----HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTL 336
            ++   KL R     + GP E+      +  +          E        +   N++ L
Sbjct: 265 NLVFPRKLCR-LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323

Query: 337 AVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYS-LTLKTL--VVHGCDHLH 393
                +G  ++ LE L   C  L+ L +   A  +G  +    ++ + L  +  GC  L 
Sbjct: 324 ETRNVIG--DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 51/314 (16%), Positives = 98/314 (31%), Gaps = 45/314 (14%)

Query: 71  RSLARRDFDNMQELKIITYSQI-DDELKHLITRFVAKEILRGKLQKLDLH---VRDHVGN 126
             LA+   D+++ LK+   S    D L  ++T          K++ L +      +  G 
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC-------RKIKTLLMEESSFSEKDGK 182

Query: 127 SLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMA 186
            L +       +    + L  L     +       +   L        S+  + V     
Sbjct: 183 WLHE-------LAQHNTSLEVLNFYMTEFAKI---SPKDLETIARNCRSLVSVKVGDFEI 232

Query: 187 --LQGFEMDAPRLNYF---QCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSM------- 234
             L GF   A  L  F     +      E ++          L       N M       
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292

Query: 235 SSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN 294
           + +  L   + +L      + + K  NLE L+  + +  +    L+    K+LK +R+E 
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY-CKQLKRLRIER 351

Query: 295 CRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELIS 354
              +  +E     +                   +G   ++ +AV     + N+SLE + +
Sbjct: 352 GADEQGMEDEEGLVSQ----------RGLIALAQGCQELEYMAVYV-SDITNESLESIGT 400

Query: 355 ACILLENLYLNSCA 368
               L +  L    
Sbjct: 401 YLKNLCDFRLVLLD 414

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 59/407 (14%), Positives = 127/407 (31%), Gaps = 70/407 (17%)

Query: 5   DRISFLPDDLTHHIMSLLP-MKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGR 63
                 P+++  H+ S +   KD    S++ K W                   RR+    
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERW------------CRRKVFIG 51

Query: 64  DFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDH 123
           + +     ++ RR F  ++ ++                       L+GK    D ++   
Sbjct: 52  NCYAVSPATVIRR-FPKVRSVE-----------------------LKGKPHFADFNLVPD 87

Query: 124 VGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVR 182
                         + SS ++L  + ++   +      T   L  ++  F  + + LV+ 
Sbjct: 88  GWGGYVYP--WIEAMSSSYTWLEEIRLKRMVV------TDDCLELIAKSF-KNFKVLVLS 138

Query: 183 GCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVF 242
            C       + A       C  +++ D       D        F     ++ +SL +L  
Sbjct: 139 SCEGFSTDGLAAIAAT---CRNLKELDLRESDVDDVSGHWLSHF----PDTYTSLVSLNI 191

Query: 243 SFM--VLNDRTFESALSKFSNLETLKLLSSV----FGKLPSSLSSAILKKLKLVRMENC- 295
           S +   ++    E  +++  NL++LKL  +V       L        L++L         
Sbjct: 192 SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ--LEELGTGGYTAEV 249

Query: 296 --RFDGPVEIHSPNLETFVYKAGHGEI--ASFHFGGRGFGNIKTLAVNGFLGLRNKSLEE 351
                  + +     +     +G  +   A           + TL ++    +++  L +
Sbjct: 250 RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY-ATVQSYDLVK 308

Query: 352 LISACILLENLYLNSCAIPKG--HLEIYSLTLKTLVVHGCDHLHFAE 396
           L+  C  L+ L++       G   L      L+ L V   +      
Sbjct: 309 LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 7  ISFLPDDLTHHIMSLLPMKDIARTSILSKRW 37
             LPD+L   I S L + ++ + S + KRW
Sbjct: 9  WDSLPDELLLGIFSCLCLPELLKVSGVCKRW 39

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 4  IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRW--------MSHWLCFPVQEFDESWFK 55
           D IS LP +L  +++S L  KD+ + +   + W        +    C      +    K
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIK 75

Query: 56 GRRESCGRDFHEYLRRSLARRD 77
           R+       H   + +  R+ 
Sbjct: 76 RRKVIKPGFIHSPWKSAYIRQH 97

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 65/327 (19%), Positives = 120/327 (36%), Gaps = 60/327 (18%)

Query: 7   ISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFH 66
              LPD+L   I S L + ++ + S + KRW            DES ++   +  G++ H
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL-------ASDESLWQ-TLDLTGKNLH 60

Query: 67  EYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGN 126
             +   L  +     +       S +D  L    + F        ++Q +DL       N
Sbjct: 61  PDVTGRLLSQGVIAFR----CPRSFMDQPLAEHFSPF--------RVQHMDL------SN 102

Query: 127 SLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMA 186
           S+ +   L   I S  S L +L++   ++     +  +  TL+   N ++ RL + GC  
Sbjct: 103 SVIEVSTL-HGILSQCSKLQNLSLEGLRL-----SDPIVNTLAK--NSNLVRLNLSGCSG 154

Query: 187 LQGFEMDA-----PRLNYFQCSGIRDFDEAFVYRPDHFCCRFLE-FKVANEN-------- 232
              F +        RL+    S   DF E  V          +    ++           
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 233 -----SMSSLETLVFSFMV-LNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSS-AILK 285
                   +L  L  S  V L +  F+    + + L+ L  LS  +  +P +L     + 
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLS-LSRCYDIIPETLLELGEIP 272

Query: 286 KLKLVRMENCRFDGPVEI---HSPNLE 309
            LK +++     DG +++     P+L+
Sbjct: 273 TLKTLQVFGIVPDGTLQLLKEALPHLQ 299

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.57
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.55
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.5
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.48
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.48
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.45
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.43
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.4
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.4
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.38
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.37
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.35
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.33
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.32
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.32
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.3
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.3
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.3
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.12
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.02
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.0
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.0
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.98
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.98
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.96
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.95
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.95
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.95
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.91
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.8
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.45
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.38
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.37
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.33
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.29
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.26
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.24
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.24
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.2
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.2
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.07
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.06
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.02
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.01
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.95
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.89
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.82
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.81
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.8
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.74
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.6
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.15
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.82
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.8
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.79
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.02
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.93
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.45
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.46
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	85.4
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	83.22

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=9.3e-25  Score=226.06  Aligned_cols=383  Identities=14%  Similarity=0.103  Sum_probs=195.3

Q ss_pred             CCCCCCCCCHHHHHHHHcCCC-hHHHHHHhhhhhhhhhccc-cCCeeEEecccccC------------------------
Q 046380            3 AIDRISFLPDDLTHHIMSLLP-MKDIARTSILSKRWMSHWL-CFPVQEFDESWFKG------------------------   56 (434)
Q Consensus         3 ~~D~is~LPdeiL~~I~s~L~-~~~~~r~~~vskrW~~lw~-~~~~l~~~~~~~~~------------------------   56 (434)
                      ..|+++.|||||+.+||+||+ .+|++++++|||||+++.. ....+.+.......                        
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence            359999999999999999999 9999999999999997621 11223222110000                        


Q ss_pred             ---CcccchhhHHHHHHHHHhccCCCcccceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccc
Q 046380           57 ---RRESCGRDFHEYLRRSLARRDFDNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYA  133 (434)
Q Consensus        57 ---~~~~~~~~~~~~v~~~l~~~~~~~l~~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~  133 (434)
                         ........+...+..+....  +.++.+.   +.... .....+......   .+++++|++..+.     ......
T Consensus        82 ~~l~~~~~~~~~~~~l~~l~~~~--~~L~~L~---L~~~~-~~~~~~~~l~~~---~~~L~~L~L~~~~-----~~~~~~  147 (594)
T 2p1m_B           82 FNLVPDGWGGYVYPWIEAMSSSY--TWLEEIR---LKRMV-VTDDCLELIAKS---FKNFKVLVLSSCE-----GFSTDG  147 (594)
T ss_dssp             GTCSCTTSCCBCHHHHHHHHHHC--TTCCEEE---EESCB-CCHHHHHHHHHH---CTTCCEEEEESCE-----EEEHHH
T ss_pred             cccccccccchhhHHHHHHHHhC--CCCCeEE---eeCcE-EcHHHHHHHHHh---CCCCcEEeCCCcC-----CCCHHH
Confidence               00000000111222222221  2345555   43221 112222211111   2577777776553     011112


Q ss_pred             cccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeec
Q 046380          134 LPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEA  211 (434)
Q Consensus       134 lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~  211 (434)
                      ++.....+.+ |++|+|++|.+..   .....++.....+++|++|++++|.    ..+ + .+..+..+||+|++|++.
T Consensus       148 l~~~~~~~~~-L~~L~L~~~~i~~---~~~~~l~~~~~~~~~L~~L~l~~~~----~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          148 LAAIAATCRN-LKELDLRESDVDD---VSGHWLSHFPDTYTSLVSLNISCLA----SEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             HHHHHHHCTT-CCEEECTTCEEEC---CCGGGGGGSCTTCCCCCEEECTTCC----SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHhCCC-CCEEeCcCCccCC---cchHHHHHHhhcCCcCcEEEecccC----CcCCHHHHHHHHHhCCCCcEEecC
Confidence            3333334555 8888888777611   0111122334467788888888742    013 2 667777778888888888


Q ss_pred             cccCCCC-----------c------------------------ccccccc-----------cceeeccCCceeEEEEEeE
Q 046380          212 FVYRPDH-----------F------------------------CCRFLEF-----------KVANENSMSSLETLVFSFM  245 (434)
Q Consensus       212 ~~~~~~~-----------~------------------------~~~~l~~-----------~~~~~~~~p~L~~L~l~~~  245 (434)
                      +|.....           .                        .|+.+..           +......+++|++|+++++
T Consensus       220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~  299 (594)
T 2p1m_B          220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA  299 (594)
T ss_dssp             TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTC
T ss_pred             CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCC
Confidence            7721100           0                        0111100           1111114678888888777


Q ss_pred             EeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec--------CCCCcceee--------------
Q 046380          246 VLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN--------CRFDGPVEI--------------  303 (434)
Q Consensus       246 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~--------c~~l~~~~~--------------  303 (434)
                      ..++.....++..+++|+.|++.+| +...........+++|++|++..        |..+....+              
T Consensus       300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~  378 (594)
T 2p1m_B          300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL  378 (594)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence            6666656666678888888888877 22111001123466777777632        222221111              


Q ss_pred             ----------------cCCcccEEEec--c----ccCc----ccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCC
Q 046380          304 ----------------HSPNLETFVYK--A----GHGE----IASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACI  357 (434)
Q Consensus       304 ----------------~~p~L~~L~l~--~----~~~~----~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p  357 (434)
                                      .+|+|+.|++.  +    +..+    ..++......+++|++|++.+  .+++..+..+.+.++
T Consensus       379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~  456 (594)
T 2p1m_B          379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAK  456 (594)
T ss_dssp             EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCT
T ss_pred             HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhch
Confidence                            24555555554  1    1111    011111133456777777755  466777777776678


Q ss_pred             ccceEEeecccccccccc---ccccccceeEeccCCccce----eeEecCceEEEEEeee
Q 046380          358 LLENLYLNSCAIPKGHLE---IYSLTLKTLVVHGCDHLHF----AEIQAPQLLYFQYVGQ  410 (434)
Q Consensus       358 ~Le~L~l~~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~----~~i~~~~l~~~~~~~~  410 (434)
                      +|+.|++++|.+....+.   ...++|+.|++++|+.-+.    +.-..++|..+...++
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~  516 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC  516 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence            888888888776333222   2256888888888876321    1112467777777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.91  E-value=2.1e-24  Score=223.39  Aligned_cols=375  Identities=15%  Similarity=0.104  Sum_probs=202.9

Q ss_pred             CCCCCC----CCCHHHHHHHHcCC-ChHHHHHHhhhhhhhhhccccCC-eeEEecccccCCcccchhhHHHHHHHHHhcc
Q 046380            3 AIDRIS----FLPDDLTHHIMSLL-PMKDIARTSILSKRWMSHWLCFP-VQEFDESWFKGRRESCGRDFHEYLRRSLARR   76 (434)
Q Consensus         3 ~~D~is----~LPdeiL~~I~s~L-~~~~~~r~~~vskrW~~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~~   76 (434)
                      ++||++    .||||++.+||+|| +.+|++++++|||||++++...+ .+.+.. .+.           ..+..++.+.
T Consensus         5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~-----------~~~~~~~~~~   72 (592)
T 3ogk_B            5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYT-----------ATPDRLSRRF   72 (592)
T ss_dssp             -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGG-----------SCHHHHHHHC
T ss_pred             hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccc-----------cChHHHHHhC
Confidence            347776    89999999999999 89999999999999998743322 122111 010           0111122111


Q ss_pred             CC-------------------------------------CcccceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEE
Q 046380           77 DF-------------------------------------DNMQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLH  119 (434)
Q Consensus        77 ~~-------------------------------------~~l~~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~  119 (434)
                      +.                                     +.++.|.   +...  .-.+....|+... ...++++|++.
T Consensus        73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~---L~~~--~i~~~~~~~l~~~-~~~~L~~L~L~  146 (592)
T 3ogk_B           73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH---FRRM--IVSDLDLDRLAKA-RADDLETLKLD  146 (592)
T ss_dssp             TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE---EESC--BCCHHHHHHHHHH-HGGGCCEEEEE
T ss_pred             CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEE---eecc--EecHHHHHHHHHh-ccccCcEEECc
Confidence            11                                     2234443   3321  1112223334332 22346666665


Q ss_pred             eecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEe-e-C-hHH
Q 046380          120 VRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE-M-D-APR  196 (434)
Q Consensus       120 ~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~-~-~-~l~  196 (434)
                      .+.     ......++.....+.+ |++|+|++|.+...   ....++.....+++|++|+++++.    +. + + .+.
T Consensus       147 ~~~-----~~~~~~l~~~~~~~~~-L~~L~L~~~~~~~~---~~~~l~~~~~~~~~L~~L~L~~n~----~~~~~~~~l~  213 (592)
T 3ogk_B          147 KCS-----GFTTDGLLSIVTHCRK-IKTLLMEESSFSEK---DGKWLHELAQHNTSLEVLNFYMTE----FAKISPKDLE  213 (592)
T ss_dssp             SCE-----EEEHHHHHHHHHHCTT-CSEEECTTCEEECC---CSHHHHHHHHHCCCCCEEECTTCC----CSSCCHHHHH
T ss_pred             CCC-----CcCHHHHHHHHhhCCC-CCEEECccccccCc---chhHHHHHHhcCCCccEEEeeccC----CCccCHHHHH
Confidence            543     1111222222224455 77777777765110   000011233466777777776521    11 1 1 566


Q ss_pred             HHHhcCCCcceeeeccccCCCCc-------------------------------ccccc----------cccceeeccCC
Q 046380          197 LNYFQCSGIRDFDEAFVYRPDHF-------------------------------CCRFL----------EFKVANENSMS  235 (434)
Q Consensus       197 ~~~~~cp~L~~L~l~~~~~~~~~-------------------------------~~~~l----------~~~~~~~~~~p  235 (434)
                      .++.+||+|++|++.+|......                               .++.+          .........++
T Consensus       214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~  293 (592)
T 3ogk_B          214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA  293 (592)
T ss_dssp             HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGG
T ss_pred             HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcC
Confidence            66777888888888776532100                               01100          11122233567


Q ss_pred             ceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec----------CCCCcceee--
Q 046380          236 SLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN----------CRFDGPVEI--  303 (434)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~----------c~~l~~~~~--  303 (434)
                      +|++|+++++..++......+..+++|+.|++..+ +...........+++|++|++.+          |..+....+  
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            88888888777666666556788888888888733 22111001123466777777774          544432211  


Q ss_pred             ---cCCcccEEEeccccCccc---------------------------------ceeecCCCCCCccEEEEcCcc-CCcH
Q 046380          304 ---HSPNLETFVYKAGHGEIA---------------------------------SFHFGGRGFGNIKTLAVNGFL-GLRN  346 (434)
Q Consensus       304 ---~~p~L~~L~l~~~~~~~~---------------------------------~~~~~~~~~~~Lk~L~l~~~~-~~~~  346 (434)
                         .+++|++|.+.++..+..                                 ++......+++|++|.++.|. .+++
T Consensus       373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence               255555555533322110                                 011112347788888887653 2678


Q ss_pred             HHHHHHHhcCCccceEEeecccccccccc---ccccccceeEeccCCcccee-----eEecCceEEEEEeee
Q 046380          347 KSLEELISACILLENLYLNSCAIPKGHLE---IYSLTLKTLVVHGCDHLHFA-----EIQAPQLLYFQYVGQ  410 (434)
Q Consensus       347 ~~l~~l~~~~p~Le~L~l~~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~~-----~i~~~~l~~~~~~~~  410 (434)
                      ..+..+...+|+|+.|+|++|.+....+.   ....+|++|++++|. +...     .-..+.+..+...++
T Consensus       453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred             HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence            88888888899999999998887432222   235789999999998 4321     123577888877663

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=3.7e-24  Score=205.75  Aligned_cols=288  Identities=16%  Similarity=0.099  Sum_probs=164.3

Q ss_pred             CCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhccccCCeeEEecccccCCcccchhhHHHHHHHHHhccCCCcccc
Q 046380            4 IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLCFPVQEFDESWFKGRRESCGRDFHEYLRRSLARRDFDNMQE   83 (434)
Q Consensus         4 ~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~~   83 (434)
                      ...+++||||++.+||+||+.+|+++++.|||+|+++... |.                                 .+++
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~---------------------------------~~~~   51 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES---------------------------------LWQT   51 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST---------------------------------TSSE
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch---------------------------------hhee
Confidence            4568999999999999999999999999999999987521 10                                 0122


Q ss_pred             eEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccc
Q 046380           84 LKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTV  163 (434)
Q Consensus        84 l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~  163 (434)
                      +.   +.... ..    ...+... ..++++.+++....        ....+..++.+.+ |++|++++|.+..      
T Consensus        52 l~---l~~~~-~~----~~~~~~~-~~~~l~~L~l~~n~--------l~~~~~~~~~~~~-L~~L~L~~~~l~~------  107 (336)
T 2ast_B           52 LD---LTGKN-LH----PDVTGRL-LSQGVIAFRCPRSF--------MDQPLAEHFSPFR-VQHMDLSNSVIEV------  107 (336)
T ss_dssp             EE---CTTCB-CC----HHHHHHH-HHTTCSEEECTTCE--------ECSCCCSCCCCBC-CCEEECTTCEECH------
T ss_pred             ec---ccccc-CC----HHHHHhh-hhccceEEEcCCcc--------ccccchhhccCCC-CCEEEccCCCcCH------
Confidence            22   11100 01    1122222 33567777665433        2233334555566 8888888887732      


Q ss_pred             cccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEE
Q 046380          164 MGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVF  242 (434)
Q Consensus       164 ~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l  242 (434)
                      .+++.....+++|++|++++      +.+ +.....++.+++|++|++++|......      ........+|+|++|++
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~------~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~------~l~~~~~~~~~L~~L~l  175 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEG------LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF------ALQTLLSSCSRLDELNL  175 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTT------CBCCHHHHHHHTTCTTCSEEECTTCBSCCHH------HHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHHhhCCCCCEEeCcC------cccCHHHHHHHhcCCCCCEEECCCCCCCCHH------HHHHHHhcCCCCCEEcC
Confidence            11234566788888888888      555 344555677888888888888432110      12222345677777777


Q ss_pred             EeE-EeCchhHHHHhccCC-CCcEEEeeccc--cc--cCCCCcchhhccCccEEEeecCCCCcc---eee-cCCcccEEE
Q 046380          243 SFM-VLNDRTFESALSKFS-NLETLKLLSSV--FG--KLPSSLSSAILKKLKLVRMENCRFDGP---VEI-HSPNLETFV  312 (434)
Q Consensus       243 ~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~--~~--~~p~~~~~~~~~~L~~L~l~~c~~l~~---~~~-~~p~L~~L~  312 (434)
                      +++ ..++......+..++ +|++|++++|.  ++  .+|.  ....+++|++|++++|..+..   ..+ .+++|++|+
T Consensus       176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~  253 (336)
T 2ast_B          176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST--LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  253 (336)
T ss_dssp             CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH--HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH--HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence            776 555555555666777 77777777763  22  2221  123466666666666653321   112 456666666


Q ss_pred             ecccc-CcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          313 YKAGH-GEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       313 l~~~~-~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ++++. ....++ .....+++|++|+++++  ++++.+..+.+.+|.|+   ++++.+
T Consensus       254 l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~---l~~n~l  305 (336)
T 2ast_B          254 LSRCYDIIPETL-LELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---INCSHF  305 (336)
T ss_dssp             CTTCTTCCGGGG-GGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---ESCCCS
T ss_pred             CCCCCCCCHHHH-HHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceE---EecccC
Confidence            65543 111111 12334556666666655  45544544443333333   444444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.57  E-value=1.9e-14  Score=137.67  Aligned_cols=215  Identities=15%  Similarity=0.126  Sum_probs=121.8

Q ss_pred             HHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEe
Q 046380          103 FVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVR  182 (434)
Q Consensus       103 wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~  182 (434)
                      .+... ...++++|++..+.        ...+|..++.... |++|+|++|.+..        +|.....+++|++|+|+
T Consensus        74 ~l~~~-~~~~l~~L~L~~n~--------l~~lp~~l~~l~~-L~~L~L~~n~l~~--------lp~~~~~l~~L~~L~Ls  135 (328)
T 4fcg_A           74 LLEDA-TQPGRVALELRSVP--------LPQFPDQAFRLSH-LQHMTIDAAGLME--------LPDTMQQFAGLETLTLA  135 (328)
T ss_dssp             HHHHH-TSTTCCEEEEESSC--------CSSCCSCGGGGTT-CSEEEEESSCCCC--------CCSCGGGGTTCSEEEEE
T ss_pred             HHhcc-cccceeEEEccCCC--------chhcChhhhhCCC-CCEEECCCCCccc--------hhHHHhccCCCCEEECC
Confidence            34444 45799999999766        5588888888777 9999999998832        34567899999999999


Q ss_pred             eecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc-cccceeeccCCceeEEEEEeEEeCchhHHHHhccCCC
Q 046380          183 GCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL-EFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSN  261 (434)
Q Consensus       183 ~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~  261 (434)
                      +      +.+..+...+..+++|++|++++|.......-... .........+++|+.|+++++....  +...+..+++
T Consensus       136 ~------n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~  207 (328)
T 4fcg_A          136 R------NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQN  207 (328)
T ss_dssp             S------CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--CCGGGGGCTT
T ss_pred             C------CccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--chHhhcCCCC
Confidence            8      44423334477899999999999876322100000 0000001235566666665554431  1123455556


Q ss_pred             CcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380          262 LETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF  341 (434)
Q Consensus       262 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~  341 (434)
                      |+.|++++|.+..+|..  ...+++|++|++++|.....+                      ...+..+++|++|+++++
T Consensus       208 L~~L~L~~N~l~~l~~~--l~~l~~L~~L~Ls~n~~~~~~----------------------p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          208 LKSLKIRNSPLSALGPA--IHHLPKLEELDLRGCTALRNY----------------------PPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             CCEEEEESSCCCCCCGG--GGGCTTCCEEECTTCTTCCBC----------------------CCCTTCCCCCCEEECTTC
T ss_pred             CCEEEccCCCCCcCchh--hccCCCCCEEECcCCcchhhh----------------------HHHhcCCCCCCEEECCCC
Confidence            66666666555555431  223444455554444332221                      122344555666666554


Q ss_pred             cCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          342 LGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       342 ~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      . .... +..-+..+++|+.|+|++|..
T Consensus       264 ~-~~~~-~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          264 S-NLLT-LPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             T-TCCB-CCTTGGGCTTCCEEECTTCTT
T ss_pred             C-chhh-cchhhhcCCCCCEEeCCCCCc
Confidence            2 1111 111124566666666666665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.57  E-value=5e-15  Score=152.91  Aligned_cols=207  Identities=14%  Similarity=0.119  Sum_probs=129.6

Q ss_pred             ccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEe--
Q 046380          169 SNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSF--  244 (434)
Q Consensus       169 ~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~--  244 (434)
                      ....+++|++|+|++      +.+ + .+..++..||+|++|.+.++...        .....+...+++|++|++++  
T Consensus       288 ~~~~~~~L~~L~Ls~------~~l~~~~~~~~~~~~~~L~~L~L~~~~~~--------~~l~~~~~~~~~L~~L~L~~g~  353 (592)
T 3ogk_B          288 LFPFAAQIRKLDLLY------ALLETEDHCTLIQKCPNLEVLETRNVIGD--------RGLEVLAQYCKQLKRLRIERGA  353 (592)
T ss_dssp             GGGGGGGCCEEEETT------CCCCHHHHHHHHTTCTTCCEEEEEGGGHH--------HHHHHHHHHCTTCCEEEEECCC
T ss_pred             HHhhcCCCcEEecCC------CcCCHHHHHHHHHhCcCCCEEeccCccCH--------HHHHHHHHhCCCCCEEEeecCc
Confidence            344666777777776      334 2 45556677777777777633220        11222334578888888883  


Q ss_pred             ---------EEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec---CCCCccee--------e-
Q 046380          245 ---------MVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN---CRFDGPVE--------I-  303 (434)
Q Consensus       245 ---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~---c~~l~~~~--------~-  303 (434)
                               ...++.....+...+++|+.|++..+.++..........+++|++|++..   |..+....        + 
T Consensus       354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~  433 (592)
T 3ogk_B          354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI  433 (592)
T ss_dssp             CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH
T ss_pred             cccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH
Confidence                     34555555556677888888888655554321111223477888888874   44554321        1 


Q ss_pred             cCCcccEEEecccc--CcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc---ccc
Q 046380          304 HSPNLETFVYKAGH--GEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE---IYS  378 (434)
Q Consensus       304 ~~p~L~~L~l~~~~--~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~---~~~  378 (434)
                      .+++|+.|+++.+.  .+...+......+++|++|.++++ ++++.++..+++.+++|+.|+|++|.+....+.   ...
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l  512 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL  512 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred             hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence            48888888885422  221222222345788888888887 688888888888888899998888886332222   234


Q ss_pred             cccceeEeccCC
Q 046380          379 LTLKTLVVHGCD  390 (434)
Q Consensus       379 ~~L~~L~l~~c~  390 (434)
                      ++|+.|++++|.
T Consensus       513 ~~L~~L~ls~n~  524 (592)
T 3ogk_B          513 PSLRYLWVQGYR  524 (592)
T ss_dssp             SSCCEEEEESCB
T ss_pred             CccCeeECcCCc
Confidence            678888888887

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.56  E-value=2e-14  Score=138.37  Aligned_cols=231  Identities=13%  Similarity=0.084  Sum_probs=115.6

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|+++.+.        ...++. +..+.+ |++|++++|.+ +.          +....+++|++|++++      
T Consensus        66 ~~L~~L~l~~n~--------i~~~~~-~~~l~~-L~~L~L~~n~i~~~----------~~~~~l~~L~~L~l~~------  119 (347)
T 4fmz_A           66 TNLEYLNLNGNQ--------ITDISP-LSNLVK-LTNLYIGTNKITDI----------SALQNLTNLRELYLNE------  119 (347)
T ss_dssp             TTCCEEECCSSC--------CCCCGG-GTTCTT-CCEEECCSSCCCCC----------GGGTTCTTCSEEECTT------
T ss_pred             CCccEEEccCCc--------cccchh-hhcCCc-CCEEEccCCcccCc----------hHHcCCCcCCEEECcC------
Confidence            677777776554        333333 333444 77777777766 32          4456777777777776      


Q ss_pred             EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                      +.+..+.. +..+++|++|++.+|.....         ......+++|++|+++++...+...   +..+++|+.|++++
T Consensus       120 n~i~~~~~-~~~l~~L~~L~l~~n~~~~~---------~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          120 DNISDISP-LANLTKMYSLNLGANHNLSD---------LSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNY  186 (347)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECTTCTTCCC---------CGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTT
T ss_pred             CcccCchh-hccCCceeEEECCCCCCccc---------ccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccC
Confidence            44411111 56677777777777744221         0112345666666666544333211   45566666666666


Q ss_pred             cccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH
Q 046380          270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS  348 (434)
Q Consensus       270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~  348 (434)
                      |.+..++.   ...+++|+.|+++++.-.....+ .+++|++|+++++...  ... ....+++|++|+++++ .++.- 
T Consensus       187 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~--~~~-~~~~l~~L~~L~l~~n-~l~~~-  258 (347)
T 4fmz_A          187 NQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT--DLS-PLANLSQLTWLEIGTN-QISDI-  258 (347)
T ss_dssp             SCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC--CCG-GGTTCTTCCEEECCSS-CCCCC-
T ss_pred             Cccccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC--CCc-chhcCCCCCEEECCCC-ccCCC-
Confidence            65555442   23455555555555432222223 4555555555554422  111 1344555555555554 22211 


Q ss_pred             HHHHHhcCCccceEEeeccccccccccccccccceeEeccCC
Q 046380          349 LEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCD  390 (434)
Q Consensus       349 l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~  390 (434)
                        ..+..+++|+.|++++|.+..-.......+|+.|++++|.
T Consensus       259 --~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          259 --NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             --hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc
Confidence              1123455555555555544221111123455555555553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.56  E-value=2.4e-14  Score=137.78  Aligned_cols=232  Identities=13%  Similarity=0.121  Sum_probs=124.9

Q ss_pred             cCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccc
Q 046380          110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      .+++++|++..+.        ...++ .+..+.+ |++|++++|.+ +.          +....+++|++|++++|... 
T Consensus        87 l~~L~~L~L~~n~--------i~~~~-~~~~l~~-L~~L~l~~n~i~~~----------~~~~~l~~L~~L~l~~n~~~-  145 (347)
T 4fmz_A           87 LVKLTNLYIGTNK--------ITDIS-ALQNLTN-LRELYLNEDNISDI----------SPLANLTKMYSLNLGANHNL-  145 (347)
T ss_dssp             CTTCCEEECCSSC--------CCCCG-GGTTCTT-CSEEECTTSCCCCC----------GGGTTCTTCCEEECTTCTTC-
T ss_pred             CCcCCEEEccCCc--------ccCch-HHcCCCc-CCEEECcCCcccCc----------hhhccCCceeEEECCCCCCc-
Confidence            3789999987765        23333 3444555 99999988877 33          33678888888888874211 


Q ss_pred             eEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          189 GFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       189 ~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                          ..+.. +..+++|++|.+.+|.......          ...+++|+.|+++++...+..   .+..+++|+.|+++
T Consensus       146 ----~~~~~-~~~l~~L~~L~l~~~~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~  207 (347)
T 4fmz_A          146 ----SDLSP-LSNMTGLNYLTVTESKVKDVTP----------IANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAY  207 (347)
T ss_dssp             ----CCCGG-GTTCTTCCEEECCSSCCCCCGG----------GGGCTTCSEEECTTSCCCCCG---GGGGCTTCCEEECC
T ss_pred             ----ccccc-hhhCCCCcEEEecCCCcCCchh----------hccCCCCCEEEccCCcccccc---cccCCCccceeecc
Confidence                11111 5677888888888776633211          234566666666654433321   14556666666666


Q ss_pred             ccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH
Q 046380          269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK  347 (434)
Q Consensus       269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~  347 (434)
                      ++.+..++.   ...+++|++|++++|.-.....+ .+++|++|+++++...  .+ .....+++|++|.++++ .++.-
T Consensus       208 ~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~--~~-~~~~~l~~L~~L~l~~n-~l~~~  280 (347)
T 4fmz_A          208 VNQITDITP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS--DI-NAVKDLTKLKMLNVGSN-QISDI  280 (347)
T ss_dssp             SSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--CC-GGGTTCTTCCEEECCSS-CCCCC
T ss_pred             cCCCCCCch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccC--CC-hhHhcCCCcCEEEccCC-ccCCC
Confidence            665554432   23455666666665532222223 4566666666554422  11 12344556666666555 22221


Q ss_pred             HHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCC
Q 046380          348 SLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCD  390 (434)
Q Consensus       348 ~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~  390 (434)
                         ..+..+++|+.|++++|.+......  ...++|+.|++++|+
T Consensus       281 ---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          281 ---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             ---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             ---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence               1134556666666666554221111  123455666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.55  E-value=1e-15  Score=146.72  Aligned_cols=253  Identities=17%  Similarity=0.154  Sum_probs=176.8

Q ss_pred             HHHHHHHHhc-CCCeEEEEEeecCCCCCCCCccccccccccC--CCceeEEEEeeeeecccccccccccccccccCcccc
Q 046380          101 TRFVAKEILR-GKLQKLDLHVRDHVGNSLCDHYALPRVIFSS--GSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVR  177 (434)
Q Consensus       101 ~~wi~~~~~~-~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~--~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~  177 (434)
                      .+|-..+ .. ...++++++...       ..   +..+...  .. ++.|++.++.+..        .++....+++|+
T Consensus        37 ~~W~~~~-~~~~~~~~l~l~~~~-------~~---~~~~~~~~~~~-l~~L~l~~n~l~~--------~~~~~~~~~~L~   96 (336)
T 2ast_B           37 KRWYRLA-SDESLWQTLDLTGKN-------LH---PDVTGRLLSQG-VIAFRCPRSFMDQ--------PLAEHFSPFRVQ   96 (336)
T ss_dssp             HHHHHHH-TCSTTSSEEECTTCB-------CC---HHHHHHHHHTT-CSEEECTTCEECS--------CCCSCCCCBCCC
T ss_pred             HHHHHHh-cCchhheeecccccc-------CC---HHHHHhhhhcc-ceEEEcCCccccc--------cchhhccCCCCC
Confidence            3466654 33 347788775433       01   2222222  34 9999999998822        125567899999


Q ss_pred             eEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeE-EeCchhHHH
Q 046380          178 RLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFM-VLNDRTFES  254 (434)
Q Consensus       178 ~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~  254 (434)
                      +|++++      +.+ + .+...+..||+|++|++++|...+.        .......+++|++|+++++ ..++.....
T Consensus        97 ~L~L~~------~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--------~~~~l~~~~~L~~L~L~~~~~l~~~~l~~  162 (336)
T 2ast_B           97 HMDLSN------SVIEVSTLHGILSQCSKLQNLSLEGLRLSDP--------IVNTLAKNSNLVRLNLSGCSGFSEFALQT  162 (336)
T ss_dssp             EEECTT------CEECHHHHHHHHTTBCCCSEEECTTCBCCHH--------HHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred             EEEccC------CCcCHHHHHHHHhhCCCCCEEeCcCcccCHH--------HHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence            999999      666 4 5888899999999999999975211        1112234899999999988 566656676


Q ss_pred             HhccCCCCcEEEeecc-ccccCCCCcchhhcc-CccEEEeecCC-CCcce----ee-cCCcccEEEecccc-Ccccceee
Q 046380          255 ALSKFSNLETLKLLSS-VFGKLPSSLSSAILK-KLKLVRMENCR-FDGPV----EI-HSPNLETFVYKAGH-GEIASFHF  325 (434)
Q Consensus       255 ~~~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~-~L~~L~l~~c~-~l~~~----~~-~~p~L~~L~l~~~~-~~~~~~~~  325 (434)
                      .+..+++|+.|++++| .++..........++ +|++|++++|. .+...    .+ .+++|++|+++++. .+.... .
T Consensus       163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~  241 (336)
T 2ast_B          163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-Q  241 (336)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-G
T ss_pred             HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-H
Confidence            7889999999999999 776421111245688 99999999985 34321    12 69999999999876 332222 2


Q ss_pred             cCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCC
Q 046380          326 GGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCD  390 (434)
Q Consensus       326 ~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~  390 (434)
                      ....+++|++|+++++.+..+.++..+ ..+|+|+.|++++| +....+.....+++.|+++++.
T Consensus       242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          242 EFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCC
T ss_pred             HHhCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEeccc
Confidence            456779999999999976777665444 47999999999999 5444555445568888886553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.53  E-value=7.9e-15  Score=151.40  Aligned_cols=207  Identities=13%  Similarity=0.083  Sum_probs=144.0

Q ss_pred             cccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEe---
Q 046380          170 NFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSF---  244 (434)
Q Consensus       170 ~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~---  244 (434)
                      ...+++|++|++++      +.+ + .+..++..||+|++|.+.+|...        .....+...+++|++|++.+   
T Consensus       285 ~~~~~~L~~L~L~~------~~l~~~~l~~~~~~~~~L~~L~l~~~~~~--------~~l~~l~~~~~~L~~L~L~~~~~  350 (594)
T 2p1m_B          285 YSVCSRLTTLNLSY------ATVQSYDLVKLLCQCPKLQRLWVLDYIED--------AGLEVLASTCKDLRELRVFPSEP  350 (594)
T ss_dssp             HHHHTTCCEEECTT------CCCCHHHHHHHHTTCTTCCEEEEEGGGHH--------HHHHHHHHHCTTCCEEEEECSCT
T ss_pred             HHhhCCCCEEEccC------CCCCHHHHHHHHhcCCCcCEEeCcCccCH--------HHHHHHHHhCCCCCEEEEecCcc
Confidence            34678888888888      445 3 66777888999999999887220        11222333578999999854   


Q ss_pred             ------EEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEee-----cCCCCcce----e----e-c
Q 046380          245 ------MVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRME-----NCRFDGPV----E----I-H  304 (434)
Q Consensus       245 ------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~-----~c~~l~~~----~----~-~  304 (434)
                            ...++.....+...+++|+.|.+..+.++..........+++|++|++.     +|..+...    .    + .
T Consensus       351 ~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~  430 (594)
T 2p1m_B          351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH  430 (594)
T ss_dssp             TCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence                  2344555555566789999998776665543221123458899999999     56666622    1    2 5


Q ss_pred             CCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc---cccccc
Q 046380          305 SPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE---IYSLTL  381 (434)
Q Consensus       305 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~---~~~~~L  381 (434)
                      +++|+.|++++ .....++......+++|++|.++++ ++++.++..+...+|+|+.|+|++|.+....+.   ...++|
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L  508 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM  508 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence            89999999976 3332222222234789999999998 788999999888999999999999998432222   234789


Q ss_pred             ceeEeccCCcc
Q 046380          382 KTLVVHGCDHL  392 (434)
Q Consensus       382 ~~L~l~~c~~l  392 (434)
                      +.|++++|+..
T Consensus       509 ~~L~l~~~~~~  519 (594)
T 2p1m_B          509 RSLWMSSCSVS  519 (594)
T ss_dssp             SEEEEESSCCB
T ss_pred             CEEeeeCCCCC
Confidence            99999999873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.50  E-value=1.8e-13  Score=137.26  Aligned_cols=126  Identities=13%  Similarity=0.113  Sum_probs=58.2

Q ss_pred             ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380          257 SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKT  335 (434)
Q Consensus       257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~  335 (434)
                      ..+++|+.|++++|.+...+.   ...+++|++|+++++.-.....+ .+++|+.|+++++...  +.. ....+++|++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~--~~~-~~~~l~~L~~  313 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE--DIS-PISNLKNLTY  313 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCS--CCG-GGGGCTTCSE
T ss_pred             hcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCccc--Cch-hhcCCCCCCE
Confidence            334444444444444433321   22344444444444422111112 3555555555554322  111 1345566666


Q ss_pred             EEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCcc
Q 046380          336 LAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       336 L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  392 (434)
                      |+++++ .+.....   +..+++|+.|++++|.+..........+|+.|++++|...
T Consensus       314 L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          314 LTLYFN-NISDISP---VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             EECCSS-CCSCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             EECcCC-cCCCchh---hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccC
Confidence            666666 3322211   3466777777777766532211122356777777777543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.49  E-value=5.1e-14  Score=137.83  Aligned_cols=256  Identities=13%  Similarity=0.055  Sum_probs=148.6

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|++..+.        ...++...+....+|++|+|++|.+..        +++ ....+++|++|++++      
T Consensus        69 ~~L~~L~L~~n~--------i~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~------  126 (390)
T 3o6n_A           69 RQVELLNLNDLQ--------IEEIDTYAFAYAHTIQKLYMGFNAIRY--------LPPHVFQNVPLLTVLVLER------  126 (390)
T ss_dssp             CCCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred             ccCcEEECCCCc--------ccccChhhccCCCCcCEEECCCCCCCc--------CCHHHhcCCCCCCEEECCC------
Confidence            789999987654        455665445444449999999988722        123 356889999999988      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                      ..+ +-...++..+++|++|++++|.....        .......+++|+.|+++++......    +..+++|+.|+++
T Consensus       127 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~  194 (390)
T 3o6n_A          127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERI--------EDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVS  194 (390)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCBC--------CTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECC
T ss_pred             CccCcCCHHHhcCCCCCcEEECCCCccCcc--------ChhhccCCCCCCEEECCCCcCCccc----cccccccceeecc
Confidence            444 22233457789999999998876322        1112345789999999876554421    3344555555554


Q ss_pred             ccc-------------------cccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccce-eecC
Q 046380          269 SSV-------------------FGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASF-HFGG  327 (434)
Q Consensus       269 ~~~-------------------~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~  327 (434)
                      ++.                   +..+|..    .+++|+.|+++++.--....+ .+++|++|+++++...  +. ...+
T Consensus       195 ~n~l~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~~  268 (390)
T 3o6n_A          195 YNLLSTLAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE--KIMYHPF  268 (390)
T ss_dssp             SSCCSEEECCSSCSEEECCSSCCCEEECC----CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC--EEESGGG
T ss_pred             cccccccCCCCcceEEECCCCeeeecccc----ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCC--CcChhHc
Confidence            443                   3333221    234666666666543222223 5778888887776533  21 1234


Q ss_pred             CCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc-ccccccceeEeccCCccceeeEecCceEEEE
Q 046380          328 RGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE-IYSLTLKTLVVHGCDHLHFAEIQAPQLLYFQ  406 (434)
Q Consensus       328 ~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~i~~~~l~~~~  406 (434)
                      ..+++|++|.++++ .++.  +......+|+|+.|++++|.+..-... ....+|+.|++++|.....-....+.+..+.
T Consensus       269 ~~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~  345 (390)
T 3o6n_A          269 VKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT  345 (390)
T ss_dssp             TTCSSCCEEECCSS-CCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEE
T ss_pred             cccccCCEEECCCC-cCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccCCEEE
Confidence            56777888888776 3322  111124567788888887776321111 1235677777777754322112234455555


Q ss_pred             Eee
Q 046380          407 YVG  409 (434)
Q Consensus       407 ~~~  409 (434)
                      ..+
T Consensus       346 l~~  348 (390)
T 3o6n_A          346 LSH  348 (390)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.48  E-value=3.4e-13  Score=135.23  Aligned_cols=241  Identities=14%  Similarity=0.103  Sum_probs=131.6

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|+++.+.        ...+|. +..+.+ |++|++++|.+ ..          +....+++|++|++++      
T Consensus        68 ~~L~~L~Ls~n~--------l~~~~~-~~~l~~-L~~L~l~~n~l~~~----------~~~~~l~~L~~L~L~~------  121 (466)
T 1o6v_A           68 NNLTQINFSNNQ--------LTDITP-LKNLTK-LVDILMNNNQIADI----------TPLANLTNLTGLTLFN------  121 (466)
T ss_dssp             TTCCEEECCSSC--------CCCCGG-GTTCTT-CCEEECCSSCCCCC----------GGGTTCTTCCEEECCS------
T ss_pred             cCCCEEECCCCc--------cCCchh-hhcccc-CCEEECCCCccccC----------hhhcCCCCCCEEECCC------
Confidence            577777776554        333333 333444 77777777666 22          2255667777777766      


Q ss_pred             EeeChHHHHHhcCCCcceeeeccccCCCCcc---ccccc---------ccceeeccCCceeEEEEEeEEeCchhHHHHhc
Q 046380          190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFC---CRFLE---------FKVANENSMSSLETLVFSFMVLNDRTFESALS  257 (434)
Q Consensus       190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~---~~~l~---------~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~  257 (434)
                      +.+..+.. +..+++|++|++++|...+...   +..++         ... ....+++|+.|+++++...+..   .+.
T Consensus       122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~---~l~  196 (466)
T 1o6v_A          122 NQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDIS---VLA  196 (466)
T ss_dssp             SCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCCG---GGG
T ss_pred             CCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCch-hhccCCCCCEEECcCCcCCCCh---hhc
Confidence            33311111 5666777777776665533211   00000         000 0223455666655554433321   245


Q ss_pred             cCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEE
Q 046380          258 KFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTL  336 (434)
Q Consensus       258 ~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L  336 (434)
                      .+++|+.|++++|.+...+.   ...+++|++|+++++.--....+ .+++|+.|+++++...  +.. ....+++|++|
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~--~~~-~~~~l~~L~~L  270 (466)
T 1o6v_A          197 KLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS--NLA-PLSGLTKLTEL  270 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC--CCG-GGTTCTTCSEE
T ss_pred             cCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccc--cch-hhhcCCCCCEE
Confidence            56666666666665555432   23456677777666542222223 5677777777766533  111 14567788888


Q ss_pred             EEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCcc
Q 046380          337 AVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       337 ~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  392 (434)
                      .++++ .+....  . +..+++|+.|++++|.+..-......++|+.|++++|...
T Consensus       271 ~l~~n-~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~  322 (466)
T 1o6v_A          271 KLGAN-QISNIS--P-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS  322 (466)
T ss_dssp             ECCSS-CCCCCG--G-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred             ECCCC-ccCccc--c-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCC
Confidence            88877 333221  1 4578888888888888733221223468888998888543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.48  E-value=3e-13  Score=130.56  Aligned_cols=247  Identities=13%  Similarity=0.026  Sum_probs=170.3

Q ss_pred             cCCCeEEEEEeecCCCCCCCCccccccccc-cCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeeccc
Q 046380          110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIF-SSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMAL  187 (434)
Q Consensus       110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~  187 (434)
                      .+++++|+++.+.        ...+|...+ .+.+ |++|++++|.+..        ++ ..+..+++|++|++++    
T Consensus        51 ~~~L~~L~l~~n~--------i~~~~~~~~~~l~~-L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~----  109 (353)
T 2z80_A           51 TEAVKSLDLSNNR--------ITYISNSDLQRCVN-LQALVLTSNGINT--------IEEDSFSSLGSLEHLDLSY----  109 (353)
T ss_dssp             CTTCCEEECTTSC--------CCEECTTTTTTCTT-CCEEECTTSCCCE--------ECTTTTTTCTTCCEEECCS----
T ss_pred             cccCcEEECCCCc--------CcccCHHHhccCCC-CCEEECCCCccCc--------cCHhhcCCCCCCCEEECCC----
Confidence            3689999987665        456666444 4455 9999999998722        11 3467899999999998    


Q ss_pred             ceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccce--eeccCCceeEEEEEeEE-eCchhHHHHhccCCCCc
Q 046380          188 QGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVA--NENSMSSLETLVFSFMV-LNDRTFESALSKFSNLE  263 (434)
Q Consensus       188 ~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~--~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~~~L~  263 (434)
                        ..+ +.....+.++++|++|++++|.....         ..  ....+++|++|+++++. .... ....+..+++|+
T Consensus       110 --n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---------~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~  177 (353)
T 2z80_A          110 --NYLSNLSSSWFKPLSSLTFLNLLGNPYKTL---------GETSLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLE  177 (353)
T ss_dssp             --SCCSSCCHHHHTTCTTCSEEECTTCCCSSS---------CSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEE
T ss_pred             --CcCCcCCHhHhCCCccCCEEECCCCCCccc---------CchhhhccCCCCcEEECCCCcccccc-CHHHccCCCCCC
Confidence              555 33345578899999999999976322         22  34468999999998863 2221 122467889999


Q ss_pred             EEEeeccccccC-CCCcchhhccCccEEEeecCCCCccee--e-cCCcccEEEeccccCcccc--eeecCCCCCCccEEE
Q 046380          264 TLKLLSSVFGKL-PSSLSSAILKKLKLVRMENCRFDGPVE--I-HSPNLETFVYKAGHGEIAS--FHFGGRGFGNIKTLA  337 (434)
Q Consensus       264 ~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~c~~l~~~~--~-~~p~L~~L~l~~~~~~~~~--~~~~~~~~~~Lk~L~  337 (434)
                      .|++++|.+... |..  ...+++|++|+++++..-....  + .+++|++|+++++......  ..........++.+.
T Consensus       178 ~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~  255 (353)
T 2z80_A          178 ELEIDASDLQSYEPKS--LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT  255 (353)
T ss_dssp             EEEEEETTCCEECTTT--TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred             EEECCCCCcCccCHHH--HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence            999999988765 332  3457789999999875322211  2 4899999999987643211  111234567889999


Q ss_pred             EcCccCCcHHHH---HHHHhcCCccceEEeecccccccccc--ccccccceeEeccCCcc
Q 046380          338 VNGFLGLRNKSL---EELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       338 l~~~~~~~~~~l---~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~l  392 (434)
                      +.+. .+++..+   ...+..+++|+.|++++|.+..-...  ....+|+.|++++++..
T Consensus       256 L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          256 FRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             EESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            9988 6766644   44467899999999999987421111  23468999999999654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.45  E-value=1e-13  Score=132.48  Aligned_cols=202  Identities=16%  Similarity=0.131  Sum_probs=125.1

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL  224 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l  224 (434)
                      ++.|+|+++.+..        +|+....+++|++|+|++      +.+..+...+..+++|++|++++|....       
T Consensus        83 l~~L~L~~n~l~~--------lp~~l~~l~~L~~L~L~~------n~l~~lp~~~~~l~~L~~L~Ls~n~l~~-------  141 (328)
T 4fcg_A           83 RVALELRSVPLPQ--------FPDQAFRLSHLQHMTIDA------AGLMELPDTMQQFAGLETLTLARNPLRA-------  141 (328)
T ss_dssp             CCEEEEESSCCSS--------CCSCGGGGTTCSEEEEES------SCCCCCCSCGGGGTTCSEEEEESCCCCC-------
T ss_pred             eeEEEccCCCchh--------cChhhhhCCCCCEEECCC------CCccchhHHHhccCCCCEEECCCCcccc-------
Confidence            9999999998833        356677899999999998      4432233345678999999999987632       


Q ss_pred             cccceeeccCCceeEEEEEeEEeCchhHH--------HHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCC
Q 046380          225 EFKVANENSMSSLETLVFSFMVLNDRTFE--------SALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCR  296 (434)
Q Consensus       225 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~  296 (434)
                        ++.....+++|++|+++++........        ..+..+++|+.|++++|.+..+|..  ..              
T Consensus       142 --lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~--l~--------------  203 (328)
T 4fcg_A          142 --LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS--IA--------------  203 (328)
T ss_dssp             --CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG--GG--------------
T ss_pred             --CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh--hc--------------
Confidence              222234566677777766432211000        0122356666666666655555431  12              


Q ss_pred             CCcceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc-
Q 046380          297 FDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE-  375 (434)
Q Consensus       297 ~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~-  375 (434)
                             .+++|++|+++++...  ++...+..+++|++|+++++. .... +...+..+++|+.|++++|........ 
T Consensus       204 -------~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~-~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~  272 (328)
T 4fcg_A          204 -------NLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCT-ALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLD  272 (328)
T ss_dssp             -------GCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCT-TCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred             -------CCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCc-chhh-hHHHhcCCCCCCEEECCCCCchhhcchh
Confidence                   3555566665554432  222345667888888888863 2221 222345789999999999987332221 


Q ss_pred             -ccccccceeEeccCCccceee
Q 046380          376 -IYSLTLKTLVVHGCDHLHFAE  396 (434)
Q Consensus       376 -~~~~~L~~L~l~~c~~l~~~~  396 (434)
                       ....+|+.|++++|..+..+.
T Consensus       273 ~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          273 IHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCCCC
T ss_pred             hhcCCCCCEEeCCCCCchhhcc
Confidence             234689999999998887544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.44  E-value=1.2e-13  Score=142.95  Aligned_cols=216  Identities=13%  Similarity=0.092  Sum_probs=119.3

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      ++++.|++..+.        ...+++..|....+|++|+|++|.+..        +++ .+..+++|++|+|++      
T Consensus        75 ~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~------  132 (597)
T 3oja_B           75 RQVELLNLNDLQ--------IEEIDTYAFAYAHTIQKLYMGFNAIRY--------LPPHVFQNVPLLTVLVLER------  132 (597)
T ss_dssp             CCCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred             CCCcEEECCCCC--------CCCCChHHhcCCCCCCEEECCCCcCCC--------CCHHHHcCCCCCCEEEeeC------
Confidence            789999987655        455665444443349999999988722        223 357899999999998      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                      +.+ .-...++.++++|+.|.+++|.....        .......+++|+.|+++++......    +..+++|+.|+++
T Consensus       133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~  200 (597)
T 3oja_B          133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERI--------EDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVS  200 (597)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCBC--------CTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECC
T ss_pred             CCCCCCCHHHhccCCCCCEEEeeCCcCCCC--------ChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcc
Confidence            544 23334467899999999999876322        1112346789999999876554421    3344555555544


Q ss_pred             cccccc-------------------CCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccce-eecC
Q 046380          269 SSVFGK-------------------LPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASF-HFGG  327 (434)
Q Consensus       269 ~~~~~~-------------------~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~  327 (434)
                      ++.+..                   +|..    ..++|+.|+++++.--....+ .+++|+.|+++++...  +. ...+
T Consensus       201 ~n~l~~l~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~--~~~~~~~  274 (597)
T 3oja_B          201 YNLLSTLAIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE--KIMYHPF  274 (597)
T ss_dssp             SSCCSEEECCTTCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC--EEESGGG
T ss_pred             cCccccccCCchhheeeccCCcccccccc----cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccC--CCCHHHh
Confidence            443332                   2211    123455555555432222222 4566666666554422  11 1123


Q ss_pred             CCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          328 RGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       328 ~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ..+++|++|.++++ .++.  +......+|+|+.|+|++|.+
T Consensus       275 ~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          275 VKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             TTCSSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSSCC
T ss_pred             cCccCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCCCC
Confidence            34555555555554 2221  111112345555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.44  E-value=9.5e-14  Score=131.84  Aligned_cols=245  Identities=13%  Similarity=0.078  Sum_probs=151.2

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEee-eee-cccccccccccccccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRH-CKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~-~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      .++++|++..+.     ......+|..+..... |++|++++ +.+ ..        +|.....+++|++|+|++     
T Consensus        50 ~~l~~L~L~~~~-----l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~--------~p~~l~~l~~L~~L~Ls~-----  110 (313)
T 1ogq_A           50 YRVNNLDLSGLN-----LPKPYPIPSSLANLPY-LNFLYIGGINNLVGP--------IPPAIAKLTQLHYLYITH-----  110 (313)
T ss_dssp             CCEEEEEEECCC-----CSSCEECCGGGGGCTT-CSEEEEEEETTEESC--------CCGGGGGCTTCSEEEEEE-----
T ss_pred             ceEEEEECCCCC-----ccCCcccChhHhCCCC-CCeeeCCCCCccccc--------CChhHhcCCCCCEEECcC-----
Confidence            578888888765     1111256776666666 99999985 555 22        245667889999999988     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCC-CCcEEE
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFS-NLETLK  266 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~  266 (434)
                       ..+ ..+...+..+++|++|++++|....        ........+++|++|+++++...+.. ...+..++ +|+.|+
T Consensus       111 -n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~~L~~L~  180 (313)
T 1ogq_A          111 -TNVSGAIPDFLSQIKTLVTLDFSYNALSG--------TLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMT  180 (313)
T ss_dssp             -ECCEEECCGGGGGCTTCCEEECCSSEEES--------CCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEE
T ss_pred             -CeeCCcCCHHHhCCCCCCEEeCCCCccCC--------cCChHHhcCCCCCeEECcCCcccCcC-CHHHhhhhhcCcEEE
Confidence             555 3444456778899999998887631        12223345788888888765443211 12345565 888888


Q ss_pred             eecccccc-CCCCcchhhccCccEEEeecCCCC--cceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCcc
Q 046380          267 LLSSVFGK-LPSSLSSAILKKLKLVRMENCRFD--GPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFL  342 (434)
Q Consensus       267 l~~~~~~~-~p~~~~~~~~~~L~~L~l~~c~~l--~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~  342 (434)
                      +++|.+.. +|..  ...+. |+.|+++++.-.  ....+ .+++|+.|+++++...  +.......+++|++|+++++ 
T Consensus       181 L~~N~l~~~~~~~--~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~l~~L~~L~Ls~N-  254 (313)
T 1ogq_A          181 ISRNRLTGKIPPT--FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNN-  254 (313)
T ss_dssp             CCSSEEEEECCGG--GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC--CBGGGCCCCTTCCEEECCSS-
T ss_pred             CcCCeeeccCChH--HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee--eecCcccccCCCCEEECcCC-
Confidence            88887763 4432  12233 888888776321  11223 5788888888776533  11122456678888888877 


Q ss_pred             CCcHHHHHHHHhcCCccceEEeeccccccccccc--cccccceeEeccCCcc
Q 046380          343 GLRNKSLEELISACILLENLYLNSCAIPKGHLEI--YSLTLKTLVVHGCDHL  392 (434)
Q Consensus       343 ~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l  392 (434)
                      .++.. ++..+..+++|+.|++++|.+.. .++.  ...+|+.|++.+++.+
T Consensus       255 ~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          255 RIYGT-LPQGLTQLKFLHSLNVSFNNLCG-EIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CCEEC-CCGGGGGCTTCCEEECCSSEEEE-ECCCSTTGGGSCGGGTCSSSEE
T ss_pred             cccCc-CChHHhcCcCCCEEECcCCcccc-cCCCCccccccChHHhcCCCCc
Confidence            44322 22233577888888888887732 2222  2346677777776644

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.43  E-value=1.6e-13  Score=137.85  Aligned_cols=243  Identities=14%  Similarity=0.060  Sum_probs=122.9

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccccc-ccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPR-VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~  188 (434)
                      +++++|+++.+.        ...+++ .+..+.+ |++|+|+++.+..        +++ .+..+++|++|+|++     
T Consensus        56 ~~L~~L~L~~n~--------i~~~~~~~~~~l~~-L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~-----  113 (477)
T 2id5_A           56 PHLEELELNENI--------VSAVEPGAFNNLFN-LRTLGLRSNRLKL--------IPLGVFTGLSNLTKLDISE-----  113 (477)
T ss_dssp             TTCCEEECTTSC--------CCEECTTTTTTCTT-CCEEECCSSCCCS--------CCTTSSTTCTTCCEEECTT-----
T ss_pred             CCCCEEECCCCc--------cCEeChhhhhCCcc-CCEEECCCCcCCc--------cCcccccCCCCCCEEECCC-----
Confidence            577777776544        333433 3333444 7777777776622        122 245677777777776     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEe
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL  267 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  267 (434)
                       ..+ ......+..+++|++|.+.++.....        .......+++|+.|+++++....... ..+..+++|+.|++
T Consensus       114 -n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l  183 (477)
T 2id5_A          114 -NKIVILLDYMFQDLYNLKSLEVGDNDLVYI--------SHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRL  183 (477)
T ss_dssp             -SCCCEECTTTTTTCTTCCEEEECCTTCCEE--------CTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEE
T ss_pred             -CccccCChhHccccccCCEEECCCCcccee--------ChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeC
Confidence             333 22233456677777777777655211        01122346677777777665443221 24566777777777


Q ss_pred             eccccccCCCCcchhhccCccEEEeecCCCCccee--------------------------e-cCCcccEEEeccccCcc
Q 046380          268 LSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVE--------------------------I-HSPNLETFVYKAGHGEI  320 (434)
Q Consensus       268 ~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~--------------------------~-~~p~L~~L~l~~~~~~~  320 (434)
                      .++.+..++.. ....+++|++|++++|..+..+.                          + .+++|+.|+++++... 
T Consensus       184 ~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-  261 (477)
T 2id5_A          184 RHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-  261 (477)
T ss_dssp             ESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-
T ss_pred             CCCcCcEeChh-hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-
Confidence            77766554321 12235566666666654333222                          1 2445555555444322 


Q ss_pred             ccee-ecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCC
Q 046380          321 ASFH-FGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCD  390 (434)
Q Consensus       321 ~~~~-~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~  390 (434)
                       ... ..+..+++|++|.++++ .+.... ...+..+++|+.|+|++|.+..-...  ....+|+.|++++++
T Consensus       262 -~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          262 -TIEGSMLHELLRLQEIQLVGG-QLAVVE-PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             -EECTTSCTTCTTCCEEECCSS-CCSEEC-TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             -ccChhhccccccCCEEECCCC-ccceEC-HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence             111 11334555666665555 222110 11123556666666666655221111  123456666666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.41  E-value=4.8e-13  Score=133.70  Aligned_cols=203  Identities=12%  Similarity=0.027  Sum_probs=142.9

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      +++++|+++.+.        ...+| .+..+.+ |++|++++|.+..        + + ...+++|++|++++      .
T Consensus        42 ~~L~~L~Ls~n~--------l~~~~-~l~~l~~-L~~L~Ls~n~l~~--------~-~-~~~l~~L~~L~Ls~------N   95 (457)
T 3bz5_A           42 ATLTSLDCHNSS--------ITDMT-GIEKLTG-LTKLICTSNNITT--------L-D-LSQNTNLTYLACDS------N   95 (457)
T ss_dssp             TTCCEEECCSSC--------CCCCT-TGGGCTT-CSEEECCSSCCSC--------C-C-CTTCTTCSEEECCS------S
T ss_pred             CCCCEEEccCCC--------cccCh-hhcccCC-CCEEEccCCcCCe--------E-c-cccCCCCCEEECcC------C
Confidence            788999887665        33444 4455566 9999999988733        1 2 67889999999988      5


Q ss_pred             eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380          191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS  270 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (434)
                      .+..+.  +..+++|++|++++|.....         .  ...+++|++|+++++.....    -+..+++|+.|++++|
T Consensus        96 ~l~~~~--~~~l~~L~~L~L~~N~l~~l---------~--~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A           96 KLTNLD--VTPLTKLTYLNCDTNKLTKL---------D--VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLN  158 (457)
T ss_dssp             CCSCCC--CTTCTTCCEEECCSSCCSCC---------C--CTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTC
T ss_pred             CCceee--cCCCCcCCEEECCCCcCCee---------c--CCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCC
Confidence            452222  67789999999998876321         1  34678889988877655542    2567888999999888


Q ss_pred             -ccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH
Q 046380          271 -VFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS  348 (434)
Q Consensus       271 -~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~  348 (434)
                       .+..++.    ..+++|++|+++++. +..+.+ .+++|+.|.++++..+  ++  ....+++|++|+++++ .++.  
T Consensus       159 ~~~~~~~~----~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~--~~--~l~~l~~L~~L~Ls~N-~l~~--  226 (457)
T 3bz5_A          159 KKITKLDV----TPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNIT--KL--DLNQNIQLTFLDCSSN-KLTE--  226 (457)
T ss_dssp             SCCCCCCC----TTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCS--CC--CCTTCTTCSEEECCSS-CCSC--
T ss_pred             Cccccccc----ccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCC--ee--ccccCCCCCEEECcCC-cccc--
Confidence             4444442    347789999988864 333345 6888999998887644  22  3567889999999888 4443  


Q ss_pred             HHHHHhcCCccceEEeeccccc
Q 046380          349 LEELISACILLENLYLNSCAIP  370 (434)
Q Consensus       349 l~~l~~~~p~Le~L~l~~~~~~  370 (434)
                      ++  +..+++|+.|++++|.+.
T Consensus       227 ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          227 ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             CC--CTTCTTCSEEECCSSCCS
T ss_pred             cC--ccccCCCCEEEeeCCcCC
Confidence            22  467899999999998873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.41  E-value=2.6e-13  Score=139.32  Aligned_cols=242  Identities=14%  Similarity=0.061  Sum_probs=132.4

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      +++++|++..+.        ...+|..+... + |++|++++|.+..        + + ...+++|++|++.+      .
T Consensus       282 ~~L~~L~l~~~~--------l~~l~~~~~~~-~-L~~L~l~~n~~~~--------l-~-~~~l~~L~~L~l~~------n  335 (570)
T 2z63_A          282 TNVSSFSLVSVT--------IERVKDFSYNF-G-WQHLELVNCKFGQ--------F-P-TLKLKSLKRLTFTS------N  335 (570)
T ss_dssp             TTCSEEEEESCE--------ECSCCBCCSCC-C-CSEEEEESCBCSS--------C-C-BCBCSSCCEEEEES------C
T ss_pred             CcccEEEecCcc--------chhhhhhhccC-C-ccEEeeccCcccc--------c-C-cccccccCEEeCcC------C
Confidence            456666665444        33455555444 4 6666666666522        1 1 14566677777766      3


Q ss_pred             ee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                      .. .....  ..+|+|++|++++|.......      .......+++|++|+++++.......  .+..+++|+.|++++
T Consensus       336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~  405 (570)
T 2z63_A          336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGC------CSQSDFGTTSLKYLDLSFNGVITMSS--NFLGLEQLEHLDFQH  405 (570)
T ss_dssp             BSCCBCCC--CBCTTCCEEECCSSCCBEEEE------EEHHHHTCSCCCEEECCSCSEEEEEE--EEETCTTCCEEECTT
T ss_pred             cccccccc--ccCCCCCEEeCcCCccCcccc------ccccccccCccCEEECCCCccccccc--cccccCCCCEEEccC
Confidence            22 11111  556777777777665421100      01122356777777776543332111  145677777777777


Q ss_pred             cccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcH
Q 046380          270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRN  346 (434)
Q Consensus       270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~  346 (434)
                      |.+...+..-....+++|++|++++|......  .+ .+++|++|+++++......+...+..+++|++|+++++ .++.
T Consensus       406 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~  484 (570)
T 2z63_A          406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQ  484 (570)
T ss_dssp             SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCE
T ss_pred             CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-cccc
Confidence            76665432112345677777777776432221  12 47778888877765332233344566777888888777 3332


Q ss_pred             HHHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCC
Q 046380          347 KSLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCD  390 (434)
Q Consensus       347 ~~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~  390 (434)
                      .. ...+..+++|+.|++++|.+......  ....+|+.|++++++
T Consensus       485 ~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          485 LS-PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             EC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CC-hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            21 12234677888888887776321111  123567777777764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.40  E-value=5.1e-13  Score=134.25  Aligned_cols=223  Identities=16%  Similarity=0.047  Sum_probs=143.5

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccccccccc-CCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFS-SGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      ++++.|+++.+.        ...++...|. +.+ |++|+|++|.+..        + +..+.++++|++|+|++     
T Consensus        32 ~~l~~L~L~~n~--------l~~~~~~~~~~l~~-L~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~L~~-----   89 (477)
T 2id5_A           32 TETRLLDLGKNR--------IKTLNQDEFASFPH-LEELELNENIVSA--------VEPGAFNNLFNLRTLGLRS-----   89 (477)
T ss_dssp             TTCSEEECCSSC--------CCEECTTTTTTCTT-CCEEECTTSCCCE--------ECTTTTTTCTTCCEEECCS-----
T ss_pred             CCCcEEECCCCc--------cceECHhHccCCCC-CCEEECCCCccCE--------eChhhhhCCccCCEEECCC-----
Confidence            578888887655        4455544444 455 9999999987722        1 24567899999999998     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEe
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL  267 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  267 (434)
                       ..+ ......+.++++|++|++++|.....        .......+++|++|+++++...... ...+..+++|+.|++
T Consensus        90 -n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l  159 (477)
T 2id5_A           90 -NRLKLIPLGVFTGLSNLTKLDISENKIVIL--------LDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTL  159 (477)
T ss_dssp             -SCCCSCCTTSSTTCTTCCEEECTTSCCCEE--------CTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEE
T ss_pred             -CcCCccCcccccCCCCCCEEECCCCccccC--------ChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEEC
Confidence             444 22233467799999999998876321        1122346789999999875443321 124578899999999


Q ss_pred             eccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCC
Q 046380          268 LSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGL  344 (434)
Q Consensus       268 ~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~  344 (434)
                      ++|.+..+|.. ....+++|+.|+++++.....  ..+ .+++|+.|+++++... ..+........+|++|+++++ .+
T Consensus       160 ~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n-~l  236 (477)
T 2id5_A          160 EKCNLTSIPTE-ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHC-NL  236 (477)
T ss_dssp             ESCCCSSCCHH-HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC-CEECTTTTTTCCCSEEEEESS-CC
T ss_pred             CCCcCcccChh-HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc-cccCcccccCccccEEECcCC-cc
Confidence            99988877631 134578999999998753222  223 5889999998875421 112122223347777777776 33


Q ss_pred             cHHHHHHHHhcCCccceEEeecccc
Q 046380          345 RNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       345 ~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      +.. -...+..+++|+.|+|++|.+
T Consensus       237 ~~~-~~~~~~~l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          237 TAV-PYLAVRHLVYLRFLNLSYNPI  260 (477)
T ss_dssp             CSC-CHHHHTTCTTCCEEECCSSCC
T ss_pred             ccc-CHHHhcCccccCeeECCCCcC
Confidence            321 112335667777777777665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.40  E-value=3e-13  Score=127.80  Aligned_cols=230  Identities=16%  Similarity=0.075  Sum_probs=155.4

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccceEee-C--hHHHHHhcCCCcc
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQGFEM-D--APRLNYFQCSGIR  206 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~~~~-~--~l~~~~~~cp~L~  206 (434)
                      ...+|..++  .+ |++|+++++.+..        +++. +..+++|++|++++      ..+ .  ........+++|+
T Consensus        19 l~~ip~~~~--~~-l~~L~L~~n~l~~--------i~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~~~~~~L~   81 (306)
T 2z66_A           19 LTSVPTGIP--SS-ATRLELESNKLQS--------LPHGVFDKLTQLTKLSLSS------NGLSFKGCCSQSDFGTTSLK   81 (306)
T ss_dssp             CSSCCSCCC--TT-CCEEECCSSCCCC--------CCTTTTTTCTTCSEEECCS------SCCCEEEEEEHHHHSCSCCC
T ss_pred             cccCCCCCC--CC-CCEEECCCCccCc--------cCHhHhhccccCCEEECCC------CccCcccCcccccccccccC
Confidence            455666544  24 9999999998732        2233 46899999999998      444 1  2234455799999


Q ss_pred             eeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccC
Q 046380          207 DFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKK  286 (434)
Q Consensus       207 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~  286 (434)
                      +|++++|...         ........+++|++|+++++..........+..+++|+.|++++|.+...+.. ....+++
T Consensus        82 ~L~Ls~n~i~---------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  151 (306)
T 2z66_A           82 YLDLSFNGVI---------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSS  151 (306)
T ss_dssp             EEECCSCSEE---------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTT
T ss_pred             EEECCCCccc---------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcC
Confidence            9999998762         23333556899999999876655433223567889999999999987665321 1245789


Q ss_pred             ccEEEeecCCCCc---ceee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccce
Q 046380          287 LKLVRMENCRFDG---PVEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLEN  361 (434)
Q Consensus       287 L~~L~l~~c~~l~---~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~  361 (434)
                      |++|+++++....   ...+ .+++|++|+++++...  +. ...+..+++|++|+++++ .++.... ..+..+++|+.
T Consensus       152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~  227 (306)
T 2z66_A          152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQV  227 (306)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTS-CCSBCCS-GGGTTCTTCCE
T ss_pred             CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC--CcCHHHhcCCCCCCEEECCCC-ccCccCh-hhccCcccCCE
Confidence            9999998874322   1223 6899999999987643  22 124567889999999988 3332111 11357899999


Q ss_pred             EEeecccccccc---ccccccccceeEeccCCc
Q 046380          362 LYLNSCAIPKGH---LEIYSLTLKTLVVHGCDH  391 (434)
Q Consensus       362 L~l~~~~~~~~~---~~~~~~~L~~L~l~~c~~  391 (434)
                      |++++|.+....   +.....+|+.|++++++.
T Consensus       228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             eECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            999999874322   222234899999998864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.38  E-value=2.3e-13  Score=135.99  Aligned_cols=231  Identities=16%  Similarity=0.122  Sum_probs=129.0

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-C-hHHHHH----hcCCCcceeeeccccCCCC
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNY----FQCSGIRDFDEAFVYRPDH  218 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~----~~cp~L~~L~l~~~~~~~~  218 (434)
                      |++|+|++|.+..   .++..++.....+++|++|++++      +.+ + ....+.    ...++|++|++++|...+.
T Consensus        87 L~~L~L~~n~i~~---~~~~~l~~~l~~~~~L~~L~Ls~------n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  157 (461)
T 1z7x_W           87 IQKLSLQNCCLTG---AGCGVLSSTLRTLPTLQELHLSD------NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  157 (461)
T ss_dssp             CCEEECTTSCCBG---GGHHHHHHHTTSCTTCCEEECCS------SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             eeEEEccCCCCCH---HHHHHHHHHHccCCceeEEECCC------CcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence            7777777776631   00011223455677777777777      444 2 333322    2245677777777754221


Q ss_pred             cccccccccceeeccCCceeEEEEEeEEeCchhHHHHhc----cCCCCcEEEeeccccccCCCCc---chhhccCccEEE
Q 046380          219 FCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALS----KFSNLETLKLLSSVFGKLPSSL---SSAILKKLKLVR  291 (434)
Q Consensus       219 ~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~p~~~---~~~~~~~L~~L~  291 (434)
                      ..    ..+......+++|++|+++++...+.....+..    ..++|+.|++++|.++..+...   ....+++|++|+
T Consensus       158 ~~----~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  233 (461)
T 1z7x_W          158 SC----EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA  233 (461)
T ss_dssp             GH----HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred             HH----HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence            10    001112234577888888776655443332222    3567888888877665532100   122467788888


Q ss_pred             eecCCCCccee-------e--cCCcccEEEeccccCcccc---eeecCCCCCCccEEEEcCccCCcHHHHHHHHh----c
Q 046380          292 MENCRFDGPVE-------I--HSPNLETFVYKAGHGEIAS---FHFGGRGFGNIKTLAVNGFLGLRNKSLEELIS----A  355 (434)
Q Consensus       292 l~~c~~l~~~~-------~--~~p~L~~L~l~~~~~~~~~---~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~----~  355 (434)
                      ++++. +....       +  .+++|++|+++++..+..+   +......+++|++|+++++ .+++.+...+..    .
T Consensus       234 Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~  311 (461)
T 1z7x_W          234 LGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEP  311 (461)
T ss_dssp             CCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTST
T ss_pred             ccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccC
Confidence            87763 22211       1  3678888888776544222   2222345778888888877 666665554443    2


Q ss_pred             CCccceEEeecccccccccc------ccccccceeEeccCC
Q 046380          356 CILLENLYLNSCAIPKGHLE------IYSLTLKTLVVHGCD  390 (434)
Q Consensus       356 ~p~Le~L~l~~~~~~~~~~~------~~~~~L~~L~l~~c~  390 (434)
                      .++|+.|++++|.+......      ....+|+.|++++|.
T Consensus       312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred             CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence            36888888888876432211      123678888888884

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.38  E-value=4.2e-13  Score=138.93  Aligned_cols=243  Identities=13%  Similarity=-0.001  Sum_probs=109.5

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      ++++++++..+.        ...+| .+..+.+ |++|++++|.+..        + +.. .+++|++|++++|...   
T Consensus       285 ~~L~~L~l~~~~--------~~~l~-~l~~~~~-L~~L~l~~n~l~~--------l-p~~-~l~~L~~L~l~~n~~~---  341 (606)
T 3vq2_A          285 ANVSAMSLAGVS--------IKYLE-DVPKHFK-WQSLSIIRCQLKQ--------F-PTL-DLPFLKSLTLTMNKGS---  341 (606)
T ss_dssp             TTCSEEEEESCC--------CCCCC-CCCTTCC-CSEEEEESCCCSS--------C-CCC-CCSSCCEEEEESCSSC---
T ss_pred             CCCCEEEecCcc--------chhhh-hcccccc-CCEEEcccccCcc--------c-ccC-CCCccceeeccCCcCc---
Confidence            456666665544        23344 3333344 6666666666522        1 222 6666666666653111   


Q ss_pred             eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380          191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS  270 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (434)
                        ...  .+..+|+|++|++++|.......      .......+++|++|+++++......  ..+..+++|+.|++++|
T Consensus       342 --~~~--~~~~l~~L~~L~ls~n~l~~~~~------~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n  409 (606)
T 3vq2_A          342 --ISF--KKVALPSLSYLDLSRNALSFSGC------CSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHS  409 (606)
T ss_dssp             --EEC--CCCCCTTCCEEECCSSCEEEEEE------CCHHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTS
T ss_pred             --cch--hhccCCCCCEEECcCCccCCCcc------hhhhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCC
Confidence              101  12345555555555554311100      0111234455555555544322211  23445556666666665


Q ss_pred             ccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH
Q 046380          271 VFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK  347 (434)
Q Consensus       271 ~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~  347 (434)
                      .+...+..-....+++|++|++++|......  .+ .+++|++|+++++..........+..+++|++|+++++ .++..
T Consensus       410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~  488 (606)
T 3vq2_A          410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQI  488 (606)
T ss_dssp             EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEE
T ss_pred             ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCcc
Confidence            5544422111234556666666655422211  12 35666666665544321112223445566666666655 22221


Q ss_pred             HHHHHHhcCCccceEEeecccccccccc--ccccccceeEeccCC
Q 046380          348 SLEELISACILLENLYLNSCAIPKGHLE--IYSLTLKTLVVHGCD  390 (434)
Q Consensus       348 ~l~~l~~~~p~Le~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~  390 (434)
                       ....+..+++|+.|++++|.+......  ....+|+.|++++|.
T Consensus       489 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          489 -SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             -ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence             111124556666666666655221111  112356666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.37  E-value=1.2e-12  Score=130.91  Aligned_cols=229  Identities=12%  Similarity=0.008  Sum_probs=156.6

Q ss_pred             cCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccce
Q 046380          110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      .+++++|+++.+.        ...+|  +....+ |++|++++|.+..        +  ....+++|++|++++      
T Consensus        63 l~~L~~L~Ls~n~--------l~~~~--~~~l~~-L~~L~Ls~N~l~~--------~--~~~~l~~L~~L~L~~------  115 (457)
T 3bz5_A           63 LTGLTKLICTSNN--------ITTLD--LSQNTN-LTYLACDSNKLTN--------L--DVTPLTKLTYLNCDT------  115 (457)
T ss_dssp             CTTCSEEECCSSC--------CSCCC--CTTCTT-CSEEECCSSCCSC--------C--CCTTCTTCCEEECCS------
T ss_pred             cCCCCEEEccCCc--------CCeEc--cccCCC-CCEEECcCCCCce--------e--ecCCCCcCCEEECCC------
Confidence            3799999998776        33344  334455 9999999998843        1  367899999999999      


Q ss_pred             EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                      ..+..+.  +..+++|++|.+++|.....           -...+++|+.|+++++......   .+..+++|+.|++++
T Consensus       116 N~l~~l~--~~~l~~L~~L~l~~N~l~~l-----------~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          116 NKLTKLD--VSQNPLLTYLNCARNTLTEI-----------DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             SCCSCCC--CTTCTTCCEEECTTSCCSCC-----------CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCS
T ss_pred             CcCCeec--CCCCCcCCEEECCCCcccee-----------ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCC
Confidence            5552222  67899999999999987332           1346789999999866322111   256789999999999


Q ss_pred             cccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH
Q 046380          270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS  348 (434)
Q Consensus       270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~  348 (434)
                      |.++.+|.    ..+++|+.|.++++.- ..+.+ .+++|+.|+++++...  ++.  ...+++|++|.++++ .++...
T Consensus       180 n~l~~l~l----~~l~~L~~L~l~~N~l-~~~~l~~l~~L~~L~Ls~N~l~--~ip--~~~l~~L~~L~l~~N-~l~~~~  249 (457)
T 3bz5_A          180 NKITELDV----SQNKLLNRLNCDTNNI-TKLDLNQNIQLTFLDCSSNKLT--EID--VTPLTQLTYFDCSVN-PLTELD  249 (457)
T ss_dssp             SCCCCCCC----TTCTTCCEEECCSSCC-SCCCCTTCTTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSS-CCSCCC
T ss_pred             Cccceecc----ccCCCCCEEECcCCcC-CeeccccCCCCCEEECcCCccc--ccC--ccccCCCCEEEeeCC-cCCCcC
Confidence            99988873    3588999999998753 33356 7899999999998754  332  667899999999988 343321


Q ss_pred             HHHHHhcCCccceEEeeccccc---------cccccc-cccccceeEeccCCcccee
Q 046380          349 LEELISACILLENLYLNSCAIP---------KGHLEI-YSLTLKTLVVHGCDHLHFA  395 (434)
Q Consensus       349 l~~l~~~~p~Le~L~l~~~~~~---------~~~~~~-~~~~L~~L~l~~c~~l~~~  395 (434)
                          ...+++|+.|+++.+...         .+.+.. ...+|+.|++++|..+..+
T Consensus       250 ----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          250 ----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             ----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEE
T ss_pred             ----HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCccccee
Confidence                235565555544443321         111111 2256666666666554433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.37  E-value=9.1e-13  Score=137.28  Aligned_cols=149  Identities=12%  Similarity=0.100  Sum_probs=90.2

Q ss_pred             CCCeEEEEEeecCCCCCCCCccc------------------cccccc--cCCCceeEEEEeeeee-cccccccccccccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYA------------------LPRVIF--SSGSFLVSLTIRHCKI-GAYQKNTVMGLTLS  169 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~------------------lp~~~~--~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~  169 (434)
                      +++++|+++.+.        ...                  +|..+.  ...+ |++|+|++|.+ ..        +|..
T Consensus       206 ~~L~~L~Ls~n~--------l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~-L~~L~L~~n~l~~~--------~p~~  268 (636)
T 4eco_A          206 TKLRQFYMGNSP--------FVAENICEAWENENSEYAQQYKTEDLKWDNLKD-LTDVEVYNCPNLTK--------LPTF  268 (636)
T ss_dssp             TTCCEEEEESCC--------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-CCEEEEECCTTCSS--------CCTT
T ss_pred             cCCCEEECcCCc--------cccccccccccccccchhcccCchhhhhcccCC-CCEEEecCCcCCcc--------ChHH
Confidence            799999999776        222                  888877  7777 99999999987 32        3567


Q ss_pred             cccCcccceEEEeeecccceEe-e-C-hHHHHHh------cCCCcceeeeccccCCCCcccccccccce--eeccCCcee
Q 046380          170 NFFNPSVRRLVVRGCMALQGFE-M-D-APRLNYF------QCSGIRDFDEAFVYRPDHFCCRFLEFKVA--NENSMSSLE  238 (434)
Q Consensus       170 ~~~~~~L~~L~L~~c~~~~~~~-~-~-~l~~~~~------~cp~L~~L~l~~~~~~~~~~~~~l~~~~~--~~~~~p~L~  238 (434)
                      ...+++|++|++++      +. + + .+...+.      .+++|++|.+++|.....         +.  ....+++|+
T Consensus       269 l~~l~~L~~L~Ls~------n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i---------p~~~~l~~l~~L~  333 (636)
T 4eco_A          269 LKALPEMQLINVAC------NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF---------PVETSLQKMKKLG  333 (636)
T ss_dssp             TTTCSSCCEEECTT------CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC---------CCHHHHTTCTTCC
T ss_pred             HhcCCCCCEEECcC------CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc---------CchhhhccCCCCC
Confidence            78999999999999      43 3 2 3443333      358999999998876422         22  223445555


Q ss_pred             EEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccC-ccEEEeecC
Q 046380          239 TLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKK-LKLVRMENC  295 (434)
Q Consensus       239 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~-L~~L~l~~c  295 (434)
                      .|+++++...+. +. .+..+++|+.|++++|.+..+|..  ...+++ |++|+++++
T Consensus       334 ~L~L~~N~l~g~-ip-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          334 MLECLYNQLEGK-LP-AFGSEIKLASLNLAYNQITEIPAN--FCGFTEQVENLSFAHN  387 (636)
T ss_dssp             EEECCSCCCEEE-CC-CCEEEEEESEEECCSSEEEECCTT--SEEECTTCCEEECCSS
T ss_pred             EEeCcCCcCccc-hh-hhCCCCCCCEEECCCCccccccHh--hhhhcccCcEEEccCC
Confidence            555554332210 00 234445555555555554444432  123344 555555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.37  E-value=7.4e-13  Score=137.08  Aligned_cols=241  Identities=17%  Similarity=0.056  Sum_probs=172.9

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|++..+.        ...+|. + ...+ |++|++++|.. ..          .....+++|++|++++      
T Consensus       307 ~~L~~L~l~~n~--------l~~lp~-~-~l~~-L~~L~l~~n~~~~~----------~~~~~l~~L~~L~ls~------  359 (606)
T 3vq2_A          307 FKWQSLSIIRCQ--------LKQFPT-L-DLPF-LKSLTLTMNKGSIS----------FKKVALPSLSYLDLSR------  359 (606)
T ss_dssp             CCCSEEEEESCC--------CSSCCC-C-CCSS-CCEEEEESCSSCEE----------CCCCCCTTCCEEECCS------
T ss_pred             ccCCEEEccccc--------Cccccc-C-CCCc-cceeeccCCcCccc----------hhhccCCCCCEEECcC------
Confidence            689999999887        366773 3 5666 99999999954 32          3456899999999998      


Q ss_pred             Eee-C--hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEE
Q 046380          190 FEM-D--APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLK  266 (434)
Q Consensus       190 ~~~-~--~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  266 (434)
                      ..+ .  .....+..+++|++|++++|...         ........+++|+.|+++++..........+..+++|+.|+
T Consensus       360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  430 (606)
T 3vq2_A          360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI---------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD  430 (606)
T ss_dssp             SCEEEEEECCHHHHCCSCCCEEECCSCSEE---------EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred             CccCCCcchhhhhccCCcccEeECCCCccc---------cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence            444 2  23566788999999999998762         22333456899999999877665433223567899999999


Q ss_pred             eeccccccCCCCcchhhccCccEEEeecCCCCc---ceee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCc
Q 046380          267 LLSSVFGKLPSSLSSAILKKLKLVRMENCRFDG---PVEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGF  341 (434)
Q Consensus       267 l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~---~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~  341 (434)
                      +++|.+...+.. ....+++|++|++++|....   ...+ .+++|+.|+++++...  +. ...+..+++|++|+++++
T Consensus       431 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          431 ISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE--QISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             CTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSS
T ss_pred             CcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC--ccChhhhcccccCCEEECCCC
Confidence            999988764321 13457899999999885433   1223 6899999999998644  22 123567899999999998


Q ss_pred             cCCcHHHHHHHHhcCCccceEEeecccccc--ccccccccccceeEeccCCcc
Q 046380          342 LGLRNKSLEELISACILLENLYLNSCAIPK--GHLEIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       342 ~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~--~~~~~~~~~L~~L~l~~c~~l  392 (434)
                       .++.. ....+..+++|+.|++++|.+..  ..+.....+|+.|++++++..
T Consensus       508 -~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          508 -NLLFL-DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             -CCSCE-EGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred             -cCCCc-CHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence             44332 12234678999999999999742  112222236999999987654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.37  E-value=4.3e-13  Score=133.81  Aligned_cols=110  Identities=12%  Similarity=-0.038  Sum_probs=61.4

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      +++++|+++.+.       ....++...|....+|++|+|++|.+...       .+.....+++|++|++++      +
T Consensus        54 ~~L~~L~L~~n~-------~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~------n  113 (455)
T 3v47_A           54 QDLQFLKVEQQT-------PGLVIRNNTFRGLSSLIILKLDYNQFLQL-------ETGAFNGLANLEVLTLTQ------C  113 (455)
T ss_dssp             TTCCEEECCCCS-------TTCEECTTTTTTCTTCCEEECTTCTTCEE-------CTTTTTTCTTCCEEECTT------S
T ss_pred             ccccEEECcCCc-------ccceECcccccccccCCEEeCCCCccCcc-------ChhhccCcccCCEEeCCC------C
Confidence            567777776554       22244444343333377777777765210       123456677777777777      4


Q ss_pred             ee-ChHHH--HHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEe
Q 046380          191 EM-DAPRL--NYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVL  247 (434)
Q Consensus       191 ~~-~~l~~--~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~  247 (434)
                      .+ +....  .+..+++|++|++++|.......       ......+++|++|+++++..
T Consensus       114 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-------ASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-------CGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccccCcccccCcccCCEEECCCCccCccCc-------ccccCCCCcccEEeCCCCcc
Confidence            44 22222  25667778888887776632200       01134567888888876544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.36  E-value=1.9e-13  Score=129.92  Aligned_cols=213  Identities=10%  Similarity=-0.019  Sum_probs=94.1

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccccccccc-CCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFS-SGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~-~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      +++++|+++.+.        ...+++..+. ..+ |++|+|++|.+ +.          +....+++|++|++++     
T Consensus        34 ~~L~~L~L~~n~--------l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~----------~~~~~l~~L~~L~Ls~-----   89 (317)
T 3o53_A           34 WNVKELDLSGNP--------LSQISAADLAPFTK-LELLNLSSNVLYET----------LDLESLSTLRTLDLNN-----   89 (317)
T ss_dssp             GGCSEEECTTSC--------CCCCCHHHHTTCTT-CCEEECTTSCCEEE----------EEETTCTTCCEEECCS-----
T ss_pred             CCCCEEECcCCc--------cCcCCHHHhhCCCc-CCEEECCCCcCCcc----------hhhhhcCCCCEEECcC-----
Confidence            356666665443        2233322222 233 66666666655 22          2245566666666666     


Q ss_pred             eEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          189 GFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       189 ~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                       +.+..+    ..+++|++|.+++|....           ......++|+.|+++++....... ..+..+++|+.|+++
T Consensus        90 -n~l~~l----~~~~~L~~L~l~~n~l~~-----------~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls  152 (317)
T 3o53_A           90 -NYVQEL----LVGPSIETLHAANNNISR-----------VSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLK  152 (317)
T ss_dssp             -SEEEEE----EECTTCCEEECCSSCCSE-----------EEECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECT
T ss_pred             -Cccccc----cCCCCcCEEECCCCccCC-----------cCccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECC
Confidence             333100    123566666666655421           111224555555555443332110 122345555555555


Q ss_pred             ccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH
Q 046380          269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK  347 (434)
Q Consensus       269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~  347 (434)
                      +|.+..++.......+++|++|+++++.--..... .+++|++|+++++...  ++...+..+++|++|+++++ .++. 
T Consensus       153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N-~l~~-  228 (317)
T 3o53_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNN-KLVL-  228 (317)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTS-CCCE-
T ss_pred             CCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCC--cchhhhcccCcccEEECcCC-cccc-
Confidence            55554433211222345555555555432111111 3555555555554322  22222334455555555554 2221 


Q ss_pred             HHHHHHhcCCccceEEeecccc
Q 046380          348 SLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       348 ~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                       +...+..+++|+.|++++|.+
T Consensus       229 -l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          229 -IEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             -ECTTCCCCTTCCEEECTTCCC
T ss_pred             -hhhHhhcCCCCCEEEccCCCc
Confidence             111123445555555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.36  E-value=1.8e-13  Score=142.68  Aligned_cols=150  Identities=13%  Similarity=0.112  Sum_probs=80.8

Q ss_pred             CceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccc-cCCCCcchhhccCccEEEeecCCCCcce--ee-cCCc-cc
Q 046380          235 SSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFG-KLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPN-LE  309 (434)
Q Consensus       235 p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~-L~  309 (434)
                      ++|+.|+++++..........+..+++|+.|++++|.+. .+|.   ...+++|++|+++++.-. .+  .+ .+++ |+
T Consensus       305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~---~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~  380 (636)
T 4eco_A          305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA---FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE  380 (636)
T ss_dssp             GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCC---CEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred             CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhh---hCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence            666666666554442111114556666666666666665 5551   234556666666665311 11  12 4566 77


Q ss_pred             EEEeccccCcccceeecCC--CCCCccEEEEcCccCCcHHHHHHHHh-------cCCccceEEeecccccccccc--ccc
Q 046380          310 TFVYKAGHGEIASFHFGGR--GFGNIKTLAVNGFLGLRNKSLEELIS-------ACILLENLYLNSCAIPKGHLE--IYS  378 (434)
Q Consensus       310 ~L~l~~~~~~~~~~~~~~~--~~~~Lk~L~l~~~~~~~~~~l~~l~~-------~~p~Le~L~l~~~~~~~~~~~--~~~  378 (434)
                      +|+++++...  .+.....  .+++|++|+++++ .+..... .-+.       .+++|+.|++++|.+..-...  ...
T Consensus       381 ~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l  456 (636)
T 4eco_A          381 NLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYN-EIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG  456 (636)
T ss_dssp             EEECCSSCCS--SCCSCCCTTCSSCEEEEECCSS-CTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT
T ss_pred             EEEccCCcCc--ccchhhhhcccCccCEEECcCC-cCCCcch-hhhcccccccccCCCCCEEECcCCccCcCCHHHHccC
Confidence            7777776533  2222222  2447888888777 3332111 0011       456888888888887321111  124


Q ss_pred             cccceeEeccCCcc
Q 046380          379 LTLKTLVVHGCDHL  392 (434)
Q Consensus       379 ~~L~~L~l~~c~~l  392 (434)
                      .+|+.|++++|..-
T Consensus       457 ~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          457 SPLSSINLMGNMLT  470 (636)
T ss_dssp             CCCSEEECCSSCCS
T ss_pred             CCCCEEECCCCCCC
Confidence            67888888888544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.35  E-value=1e-12  Score=125.49  Aligned_cols=216  Identities=11%  Similarity=0.051  Sum_probs=97.6

Q ss_pred             eeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCR  222 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~  222 (434)
                      |++|+++++.+..        +++ .+..+++|++|++++      ..+ +.....+..+++|++|+++++.....    
T Consensus        54 l~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l----  115 (330)
T 1xku_A           54 TALLDLQNNKITE--------IKDGDFKNLKNLHTLILIN------NKISKISPGAFAPLVKLERLYLSKNQLKEL----  115 (330)
T ss_dssp             CCEEECCSSCCCC--------BCTTTTTTCTTCCEEECCS------SCCCCBCTTTTTTCTTCCEEECCSSCCSBC----
T ss_pred             CeEEECCCCcCCE--------eChhhhccCCCCCEEECCC------CcCCeeCHHHhcCCCCCCEEECCCCcCCcc----
Confidence            6666666665521        112 345666666666665      333 22223345566666666666654211    


Q ss_pred             cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCC-cchhhccCccEEEeecCCCCcce
Q 046380          223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSS-LSSAILKKLKLVRMENCRFDGPV  301 (434)
Q Consensus       223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~c~~l~~~  301 (434)
                           ..  ...++|++|+++++...... ...+..+++|+.|+++++.+...+.. .....+++|++|+++++.--...
T Consensus       116 -----~~--~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          116 -----PE--KMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             -----CS--SCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             -----Ch--hhcccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence                 00  11255666666554433221 11345556666666666554321100 01233556666666554321111


Q ss_pred             eecCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc-cccc
Q 046380          302 EIHSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE-IYSL  379 (434)
Q Consensus       302 ~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~-~~~~  379 (434)
                      ....++|++|+++++...  +. ...+..+++|++|+++++ .++.... ..+..+++|+.|++++|.+..-... ....
T Consensus       188 ~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~  263 (330)
T 1xku_A          188 QGLPPSLTELHLDGNKIT--KVDAASLKGLNNLAKLGLSFN-SISAVDN-GSLANTPHLRELHLNNNKLVKVPGGLADHK  263 (330)
T ss_dssp             SSCCTTCSEEECTTSCCC--EECTGGGTTCTTCCEEECCSS-CCCEECT-TTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred             ccccccCCEEECCCCcCC--ccCHHHhcCCCCCCEEECCCC-cCceeCh-hhccCCCCCCEEECCCCcCccCChhhccCC
Confidence            112356666666554422  11 112344556666666555 2221110 1123456666666666654210000 1124


Q ss_pred             ccceeEeccCC
Q 046380          380 TLKTLVVHGCD  390 (434)
Q Consensus       380 ~L~~L~l~~c~  390 (434)
                      +|+.|++++|.
T Consensus       264 ~L~~L~l~~N~  274 (330)
T 1xku_A          264 YIQVVYLHNNN  274 (330)
T ss_dssp             SCCEEECCSSC
T ss_pred             CcCEEECCCCc
Confidence            56666666553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.35  E-value=3.3e-13  Score=131.90  Aligned_cols=242  Identities=11%  Similarity=0.029  Sum_probs=147.8

Q ss_pred             CCCeEEEEEeecCCCCCCC--CccccccccccCCCceeEEEEeeeeecccccc---cccccccccccCcccceEEEeeec
Q 046380          111 GKLQKLDLHVRDHVGNSLC--DHYALPRVIFSSGSFLVSLTIRHCKIGAYQKN---TVMGLTLSNFFNPSVRRLVVRGCM  185 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~--~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~l~~~~~~~~~L~~L~L~~c~  185 (434)
                      +++++|+++.+.     ..  ....++..+..+.+ |++|+|++|........   +...+......+++|++|+|++  
T Consensus        32 ~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~-L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~--  103 (386)
T 2ca6_A           32 DSVKEIVLSGNT-----IGTEAARWLSENIASKKD-LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD--  103 (386)
T ss_dssp             SCCCEEECTTSE-----ECHHHHHHHHHTTTTCTT-CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS--
T ss_pred             CCccEEECCCCC-----CCHHHHHHHHHHHHhCCC-ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC--
Confidence            789999887654     11  01113333444556 99999998754210000   0000011125788999999998  


Q ss_pred             ccceEee-C----hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccC---------CceeEEEEEeEEeCchh
Q 046380          186 ALQGFEM-D----APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSM---------SSLETLVFSFMVLNDRT  251 (434)
Q Consensus       186 ~~~~~~~-~----~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~---------p~L~~L~l~~~~~~~~~  251 (434)
                          +.+ +    .+...+..+++|++|++++|.......    ..+.......         ++|++|+++++...+..
T Consensus       104 ----n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A          104 ----NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG----AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             ----CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH----HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             ----CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH----HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence                666 3    355667889999999999887621100    0001111112         88999999887776544


Q ss_pred             HH---HHhccCCCCcEEEeecccccc------CCCCcchhhccCccEEEeecCCCC----cce--ee-cCCcccEEEecc
Q 046380          252 FE---SALSKFSNLETLKLLSSVFGK------LPSSLSSAILKKLKLVRMENCRFD----GPV--EI-HSPNLETFVYKA  315 (434)
Q Consensus       252 ~~---~~~~~~~~L~~L~l~~~~~~~------~p~~~~~~~~~~L~~L~l~~c~~l----~~~--~~-~~p~L~~L~l~~  315 (434)
                      ..   ..+..+++|+.|++++|.+..      .|.  ....+++|++|++++|.--    ..+  .+ .+++|+.|++++
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~--~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH--HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            44   455688899999999887662      121  1235778899998887531    111  12 578899999888


Q ss_pred             ccCcccc---eeecC--CCCCCccEEEEcCccCCcHHHHH----HHHhcCCccceEEeecccccc
Q 046380          316 GHGEIAS---FHFGG--RGFGNIKTLAVNGFLGLRNKSLE----ELISACILLENLYLNSCAIPK  371 (434)
Q Consensus       316 ~~~~~~~---~~~~~--~~~~~Lk~L~l~~~~~~~~~~l~----~l~~~~p~Le~L~l~~~~~~~  371 (434)
                      +.....+   +....  ..+++|++|+++++ .++..++.    .+..++|+|+.|++++|.+..
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            7644221   11122  34788999999888 67775332    233567899999999888743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=2.2e-12  Score=137.81  Aligned_cols=230  Identities=12%  Similarity=0.054  Sum_probs=130.3

Q ss_pred             CCCeEEEEEeecCCCCC-CCCc---------cccccccc--cCCCceeEEEEeeeee-cccccccccccccccccCcccc
Q 046380          111 GKLQKLDLHVRDHVGNS-LCDH---------YALPRVIF--SSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVR  177 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~-~~~~---------~~lp~~~~--~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~  177 (434)
                      +++++|+++.+.=.+.. ....         ..+|..+.  ...+ |++|+|++|.+ ..        +|.....+++|+
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~-L~~L~Ls~N~l~~~--------iP~~l~~L~~L~  518 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD-LTDVELYNCPNMTQ--------LPDFLYDLPELQ  518 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-CCEEEEESCTTCCS--------CCGGGGGCSSCC
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC-CCEEECcCCCCCcc--------ChHHHhCCCCCC
Confidence            78999999987610000 0000         02888875  6666 99999999976 32        356678999999


Q ss_pred             eEEEeeecccceEeeC-hHHHHH-------hcCCCcceeeeccccCCCCcccccccccce--eeccCCceeEEEEEeEEe
Q 046380          178 RLVVRGCMALQGFEMD-APRLNY-------FQCSGIRDFDEAFVYRPDHFCCRFLEFKVA--NENSMSSLETLVFSFMVL  247 (434)
Q Consensus       178 ~L~L~~c~~~~~~~~~-~l~~~~-------~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~--~~~~~p~L~~L~l~~~~~  247 (434)
                      +|+|++|..+.    . .+...+       ..+|+|+.|.+++|....         ++.  ....+++|+.|+++++..
T Consensus       519 ~L~Ls~N~~ls----g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---------ip~~~~l~~L~~L~~L~Ls~N~l  585 (876)
T 4ecn_A          519 SLNIACNRGIS----AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---------FPASASLQKMVKLGLLDCVHNKV  585 (876)
T ss_dssp             EEECTTCTTSC----HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB---------CCCHHHHTTCTTCCEEECTTSCC
T ss_pred             EEECcCCCCcc----cccchHHHHhhhhcccccCCccEEEeeCCcCCc---------cCChhhhhcCCCCCEEECCCCCc
Confidence            99999832111    1 233322       456699999999987732         222  234567777777766554


Q ss_pred             CchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccC-ccEEEeecCCCCccee-e---cCCcccEEEeccccCcc--
Q 046380          248 NDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKK-LKLVRMENCRFDGPVE-I---HSPNLETFVYKAGHGEI--  320 (434)
Q Consensus       248 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~-L~~L~l~~c~~l~~~~-~---~~p~L~~L~l~~~~~~~--  320 (434)
                      ..-.   .+..+++|+.|++++|.+..+|..  ...+++ |++|+++++.--.... +   ..++|+.|+++++....  
T Consensus       586 ~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~--l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          586 RHLE---AFGTNVKLTDLKLDYNQIEEIPED--FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             CBCC---CCCTTSEESEEECCSSCCSCCCTT--SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred             ccch---hhcCCCcceEEECcCCccccchHH--HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence            4211   456667777777777776666643  234555 7777777654221111 1   12346777766654321  


Q ss_pred             cceeecCC--CCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          321 ASFHFGGR--GFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       321 ~~~~~~~~--~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ..+.....  .+.+|+.|.++++ .++ ..-..++..+++|+.|+|++|.+
T Consensus       661 p~l~~~l~~~~~~~L~~L~Ls~N-~L~-~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          661 RNISCSMDDYKGINASTVTLSYN-EIQ-KFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             SSCSSCTTTCCCCCEEEEECCSS-CCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred             ccchhhhccccCCCcCEEEccCC-cCC-ccCHHHHccCCCCCEEECCCCcC
Confidence            11111111  2336666666665 333 11223334556666666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.35  E-value=5.9e-13  Score=137.83  Aligned_cols=82  Identities=10%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             CCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEe
Q 046380          112 KLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE  191 (434)
Q Consensus       112 ~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~  191 (434)
                      +++++++..+.        ...++...|....+|++|++++|.+..        +|+....+++|++|++++      +.
T Consensus       255 ~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~--------lp~~l~~l~~L~~L~l~~------n~  312 (606)
T 3t6q_A          255 SVESINLQKHY--------FFNISSNTFHCFSGLQELDLTATHLSE--------LPSGLVGLSTLKKLVLSA------NK  312 (606)
T ss_dssp             EEEEEECTTCC--------CSSCCTTTTTTCTTCSEEECTTSCCSC--------CCSSCCSCTTCCEEECTT------CC
T ss_pred             ceeEEEeecCc--------cCccCHHHhccccCCCEEeccCCccCC--------CChhhcccccCCEEECcc------CC
Confidence            55666665443        344444444433337777777666522        234455666777777766      43


Q ss_pred             e-ChHHHHHhcCCCcceeeeccccC
Q 046380          192 M-DAPRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       192 ~-~~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      + +.....+..+++|++|.+++|..
T Consensus       313 l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          313 FENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             CSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             cCcCchhhhhccCcCCEEECCCCCc
Confidence            3 22233455566666666666644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.35  E-value=1.3e-12  Score=130.34  Aligned_cols=85  Identities=18%  Similarity=0.205  Sum_probs=60.3

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccc-ccccccCCCceeEEEEeeeeecccccccccccccc--cccCcccceEEEeeeccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYAL-PRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS--NFFNPSVRRLVVRGCMAL  187 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~l-p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~L~~c~~~  187 (434)
                      +++++|+++.+.        ...+ |..+....+ |++|+|++|.+..       .++..  ...+++|++|+|++    
T Consensus        79 ~~L~~L~Ls~n~--------l~~~~~~~~~~l~~-L~~L~L~~n~l~~-------~~~~~~~~~~l~~L~~L~L~~----  138 (455)
T 3v47_A           79 SSLIILKLDYNQ--------FLQLETGAFNGLAN-LEVLTLTQCNLDG-------AVLSGNFFKPLTSLEMLVLRD----  138 (455)
T ss_dssp             TTCCEEECTTCT--------TCEECTTTTTTCTT-CCEEECTTSCCBT-------HHHHSSTTTTCTTCCEEECCS----
T ss_pred             ccCCEEeCCCCc--------cCccChhhccCccc-CCEEeCCCCCCCc-------cccCcccccCcccCCEEECCC----
Confidence            789999998765        3444 444444555 9999999998721       00122  66899999999998    


Q ss_pred             ceEee-C-hHHHHHhcCCCcceeeeccccCCC
Q 046380          188 QGFEM-D-APRLNYFQCSGIRDFDEAFVYRPD  217 (434)
Q Consensus       188 ~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~  217 (434)
                        ..+ + ....++.++++|++|++++|....
T Consensus       139 --n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A          139 --NNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             --SBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             --CccCccCcccccCCCCcccEEeCCCCcccc
Confidence              555 3 233457889999999999987643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.34  E-value=1.2e-13  Score=137.99  Aligned_cols=278  Identities=12%  Similarity=0.057  Sum_probs=179.1

Q ss_pred             CCeEEEEEeecCCCCCCCC--ccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccc
Q 046380          112 KLQKLDLHVRDHVGNSLCD--HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       112 ~l~~L~l~~~~~~~~~~~~--~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~  188 (434)
                      ++++|+++.+.     ...  ...+|..+..+.+ |++|++++|.+...   ....+... ....++|++|++++     
T Consensus        86 ~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~---~~~~l~~~l~~~~~~L~~L~L~~-----  151 (461)
T 1z7x_W           86 KIQKLSLQNCC-----LTGAGCGVLSSTLRTLPT-LQELHLSDNLLGDA---GLQLLCEGLLDPQCRLEKLQLEY-----  151 (461)
T ss_dssp             CCCEEECTTSC-----CBGGGHHHHHHHTTSCTT-CCEEECCSSBCHHH---HHHHHHHHHTSTTCCCCEEECTT-----
T ss_pred             ceeEEEccCCC-----CCHHHHHHHHHHHccCCc-eeEEECCCCcCchH---HHHHHHHHHhcCCCcceEEECCC-----
Confidence            69999997765     111  1245666666676 99999999987210   00001011 22356899999999     


Q ss_pred             eEee-C----hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchh---HHHHhccCC
Q 046380          189 GFEM-D----APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRT---FESALSKFS  260 (434)
Q Consensus       189 ~~~~-~----~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~~~~  260 (434)
                       +.+ +    .+...+..+++|++|++++|...+... .  .....+....++|++|+++++...+..   +...+..++
T Consensus       152 -n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  227 (461)
T 1z7x_W          152 -CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV-R--VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA  227 (461)
T ss_dssp             -SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH-H--HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred             -CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH-H--HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence             555 2    456667889999999999987522100 0  000111123569999999988776643   344567899


Q ss_pred             CCcEEEeeccccccCCCCcch----hhccCccEEEeecCCCCcce-------ee-cCCcccEEEeccccCccccee---e
Q 046380          261 NLETLKLLSSVFGKLPSSLSS----AILKKLKLVRMENCRFDGPV-------EI-HSPNLETFVYKAGHGEIASFH---F  325 (434)
Q Consensus       261 ~L~~L~l~~~~~~~~p~~~~~----~~~~~L~~L~l~~c~~l~~~-------~~-~~p~L~~L~l~~~~~~~~~~~---~  325 (434)
                      +|+.|++++|.+.........    ..+++|++|++++|. +...       .+ .+++|++|+++++.....+..   .
T Consensus       228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence            999999999976543210001    136799999999984 3331       12 489999999999764322211   1


Q ss_pred             -cCCCCCCccEEEEcCccCCcHH---HHHHHHhcCCccceEEeeccccccccccc-------cccccceeEeccCCccc-
Q 046380          326 -GGRGFGNIKTLAVNGFLGLRNK---SLEELISACILLENLYLNSCAIPKGHLEI-------YSLTLKTLVVHGCDHLH-  393 (434)
Q Consensus       326 -~~~~~~~Lk~L~l~~~~~~~~~---~l~~l~~~~p~Le~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~c~~l~-  393 (434)
                       .....++|++|.++++ .++..   .+...+..+++|+.|++++|.+.......       ...+|+.|++++|..-+ 
T Consensus       307 ~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~  385 (461)
T 1z7x_W          307 TLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  385 (461)
T ss_dssp             HHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             HhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh
Confidence             1123469999999999 56655   45566678999999999999874422221       14589999999996442 


Q ss_pred             ---eee---EecCceEEEEEee
Q 046380          394 ---FAE---IQAPQLLYFQYVG  409 (434)
Q Consensus       394 ---~~~---i~~~~l~~~~~~~  409 (434)
                         .+.   ...+++..+.+.+
T Consensus       386 ~~~~l~~~l~~~~~L~~L~l~~  407 (461)
T 1z7x_W          386 SCSSLAATLLANHSLRELDLSN  407 (461)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCS
T ss_pred             hHHHHHHHHHhCCCccEEECCC
Confidence               111   1246777777655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.34  E-value=5.6e-13  Score=137.98  Aligned_cols=15  Identities=7%  Similarity=0.208  Sum_probs=7.7

Q ss_pred             cCCccceEEeecccc
Q 046380          355 ACILLENLYLNSCAI  369 (434)
Q Consensus       355 ~~p~Le~L~l~~~~~  369 (434)
                      .+++|+.|++++|.+
T Consensus       498 ~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          498 SLKMMNHVDLSHNRL  512 (606)
T ss_dssp             TCTTCCEEECCSSCC
T ss_pred             cccCCCEEECCCCcc
Confidence            445555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.33  E-value=5.3e-13  Score=134.54  Aligned_cols=213  Identities=10%  Similarity=-0.020  Sum_probs=123.3

Q ss_pred             CCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceE
Q 046380          112 KLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       112 ~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      ++++|+++.+.        ...+++..+....+|++|+|++|.+ +.          +....+++|++|+|++      +
T Consensus        35 ~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~l~~l~~L~~L~Ls~------N   90 (487)
T 3oja_A           35 NVKELDLSGNP--------LSQISAADLAPFTKLELLNLSSNVLYET----------LDLESLSTLRTLDLNN------N   90 (487)
T ss_dssp             GCCEEECCSSC--------CCCCCGGGGTTCTTCCEEECTTSCCEEE----------EECTTCTTCCEEECCS------S
T ss_pred             CccEEEeeCCc--------CCCCCHHHHhCCCCCCEEEeeCCCCCCC----------cccccCCCCCEEEecC------C
Confidence            78888887655        3344443343333388888888876 33          2366788888888887      4


Q ss_pred             eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380          191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS  270 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (434)
                      .+..+    ...|+|+.|.+++|.....           .....++|+.|+++++....... ..+..+++|+.|++++|
T Consensus        91 ~l~~l----~~~~~L~~L~L~~N~l~~~-----------~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A           91 YVQEL----LVGPSIETLHAANNNISRV-----------SCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLN  154 (487)
T ss_dssp             EEEEE----EECTTCCEEECCSSCCCCE-----------EECCCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTS
T ss_pred             cCCCC----CCCCCcCEEECcCCcCCCC-----------CccccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCC
Confidence            44111    1237888888887766322           11235677777776655443211 13455677777777777


Q ss_pred             ccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHH
Q 046380          271 VFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSL  349 (434)
Q Consensus       271 ~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l  349 (434)
                      .+...+.......+++|++|+++++.--..... .+++|+.|+++++..+  ++...+..+++|+.|+++++ .++.  +
T Consensus       155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N-~l~~--l  229 (487)
T 3oja_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNN-KLVL--I  229 (487)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTS-CCCE--E
T ss_pred             CCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCC-cCcc--c
Confidence            666543222223466777777777643222222 4677777777766533  23233455667777777766 3331  2


Q ss_pred             HHHHhcCCccceEEeecccc
Q 046380          350 EELISACILLENLYLNSCAI  369 (434)
Q Consensus       350 ~~l~~~~p~Le~L~l~~~~~  369 (434)
                      +..+..+++|+.|++++|.+
T Consensus       230 p~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCB
T ss_pred             chhhccCCCCCEEEcCCCCC
Confidence            22234566777777777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.33  E-value=1.3e-12  Score=139.50  Aligned_cols=255  Identities=12%  Similarity=0.049  Sum_probs=152.9

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccccc--ccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPR--VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      +++++|+++.+.        ...+|.  .+....+ |+.|+|++|.+..        + |....+++|++|+|++     
T Consensus       548 ~~L~~L~Ls~N~--------L~~ip~~~~l~~L~~-L~~L~Ls~N~l~~--------l-p~~~~L~~L~~L~Ls~-----  604 (876)
T 4ecn_A          548 PKIQIFYMGYNN--------LEEFPASASLQKMVK-LGLLDCVHNKVRH--------L-EAFGTNVKLTDLKLDY-----  604 (876)
T ss_dssp             TTCCEEECCSSC--------CCBCCCHHHHTTCTT-CCEEECTTSCCCB--------C-CCCCTTSEESEEECCS-----
T ss_pred             CCccEEEeeCCc--------CCccCChhhhhcCCC-CCEEECCCCCccc--------c-hhhcCCCcceEEECcC-----
Confidence            478888877655        336776  5555555 8888888887632        2 3666778888888887     


Q ss_pred             eEeeChHHHHHhcCCC-cceeeeccccCCCCcc----cc--cccc-------c----c-----eeeccCCceeEEEEEeE
Q 046380          189 GFEMDAPRLNYFQCSG-IRDFDEAFVYRPDHFC----CR--FLEF-------K----V-----ANENSMSSLETLVFSFM  245 (434)
Q Consensus       189 ~~~~~~l~~~~~~cp~-L~~L~l~~~~~~~~~~----~~--~l~~-------~----~-----~~~~~~p~L~~L~l~~~  245 (434)
                       +.+..+...+..+++ |++|.+++|.......    ..  .+..       +    +     ......++|+.|+++++
T Consensus       605 -N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N  683 (876)
T 4ecn_A          605 -NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN  683 (876)
T ss_dssp             -SCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred             -CccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence             333122233566777 8888888876543211    00  0000       0    0     01113347778877766


Q ss_pred             EeCchhHHHHhccCCCCcEEEeeccccccCCCCcch------hhccCccEEEeecCCCCc--ceee--cCCcccEEEecc
Q 046380          246 VLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSS------AILKKLKLVRMENCRFDG--PVEI--HSPNLETFVYKA  315 (434)
Q Consensus       246 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~------~~~~~L~~L~l~~c~~l~--~~~~--~~p~L~~L~l~~  315 (434)
                      ...... ..+...+++|+.|++++|.+..+|.....      ..+++|++|++++|.--.  ....  .+++|+.|++++
T Consensus       684 ~L~~lp-~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~  762 (876)
T 4ecn_A          684 EIQKFP-TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY  762 (876)
T ss_dssp             CCCSCC-HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCS
T ss_pred             cCCccC-HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCC
Confidence            555321 22345778888888888888777764322      123488888888774221  1111  468888888888


Q ss_pred             ccCcccceeecCCCCCCccEEEEcCccCCcH----HHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCc
Q 046380          316 GHGEIASFHFGGRGFGNIKTLAVNGFLGLRN----KSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDH  391 (434)
Q Consensus       316 ~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~----~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~  391 (434)
                      +...  +++.....+++|+.|.++++...+.    ..++.-+..+++|+.|+|++|.+ ..-.....++|+.|++++|+.
T Consensus       763 N~L~--~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          763 NCFS--SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN  839 (876)
T ss_dssp             SCCS--SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred             CCCC--ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence            7644  3444456778888888876321111    11222335788888888888887 322222346888888888875


Q ss_pred             cc
Q 046380          392 LH  393 (434)
Q Consensus       392 l~  393 (434)
                      .+
T Consensus       840 ~~  841 (876)
T 4ecn_A          840 IS  841 (876)
T ss_dssp             CE
T ss_pred             Cc
Confidence            53

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.33  E-value=5.9e-13  Score=132.50  Aligned_cols=222  Identities=14%  Similarity=0.061  Sum_probs=116.3

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      ++++.|+++.+.        ...++...|....+|++|+|++|.+..        ++ ..+.++++|++|+|++      
T Consensus        64 ~~l~~L~L~~n~--------i~~~~~~~~~~l~~L~~L~Ls~n~i~~--------i~~~~~~~l~~L~~L~L~~------  121 (440)
T 3zyj_A           64 TNTRLLNLHENQ--------IQIIKVNSFKHLRHLEILQLSRNHIRT--------IEIGAFNGLANLNTLELFD------  121 (440)
T ss_dssp             TTCSEEECCSCC--------CCEECTTTTSSCSSCCEEECCSSCCCE--------ECGGGGTTCSSCCEEECCS------
T ss_pred             CCCcEEEccCCc--------CCeeCHHHhhCCCCCCEEECCCCcCCc--------cChhhccCCccCCEEECCC------
Confidence            456666665544        334443333332337777777766521        11 2344667777777766      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                      +.+ +.....+..+++|++|++++|.....        .......+++|+.|+++++..........+..+++|+.|+++
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  193 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESI--------PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA  193 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEE--------CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCccccc--------CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence            333 22222345567777777776655211        011123456777777665221111111134567777777777


Q ss_pred             ccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCccCC
Q 046380          269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFLGL  344 (434)
Q Consensus       269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~~~  344 (434)
                      +|.++.+|.   ...+++|++|+++++.-...  -.+ .+++|+.|.+.++...  .+. ..+..+++|++|+++++ .+
T Consensus       194 ~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N-~l  267 (440)
T 3zyj_A          194 MCNLREIPN---LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ--VIERNAFDNLQSLVEINLAHN-NL  267 (440)
T ss_dssp             TSCCSSCCC---CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTSSTTCTTCCEEECTTS-CC
T ss_pred             CCcCccccc---cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee--EEChhhhcCCCCCCEEECCCC-CC
Confidence            777766664   33466777777776532111  122 4677777777665532  111 12445667777777766 33


Q ss_pred             cHHHHHHHHhcCCccceEEeecccc
Q 046380          345 RNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       345 ~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      +.. ....+..+++|+.|+|++++.
T Consensus       268 ~~~-~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          268 TLL-PHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CCC-CTTTTSSCTTCCEEECCSSCE
T ss_pred             Ccc-ChhHhccccCCCEEEcCCCCc
Confidence            211 112234567777777776553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.33  E-value=5.5e-13  Score=133.16  Aligned_cols=195  Identities=16%  Similarity=0.048  Sum_probs=86.2

Q ss_pred             eeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCR  222 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~  222 (434)
                      |++|+|++|.+..        ++ ..+.++++|++|+|++      ..+ ......+..+++|++|++++|.....    
T Consensus       101 L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----  162 (452)
T 3zyi_A          101 LEVLQLGRNSIRQ--------IEVGAFNGLASLNTLELFD------NWLTVIPSGAFEYLSKLRELWLRNNPIESI----  162 (452)
T ss_dssp             CCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCS------SCCSBCCTTTSSSCTTCCEEECCSCCCCEE----
T ss_pred             CCEEECCCCccCC--------cChhhccCcccCCEEECCC------CcCCccChhhhcccCCCCEEECCCCCccee----
Confidence            6666666655411        11 2334556666666665      333 11122344556666666665554211    


Q ss_pred             cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--
Q 046380          223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--  300 (434)
Q Consensus       223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--  300 (434)
                          .......+++|++|+++++..........+..+++|+.|++++|.+..+|.   ...+++|++|+++++.-...  
T Consensus       163 ----~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~  235 (452)
T 3zyi_A          163 ----PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN---LTPLVGLEELEMSGNHFPEIRP  235 (452)
T ss_dssp             ----CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC---CTTCTTCCEEECTTSCCSEECG
T ss_pred             ----CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc---ccccccccEEECcCCcCcccCc
Confidence                001122345556655554211110001123455666666666665555543   22345566666555432111  


Q ss_pred             eee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccc
Q 046380          301 VEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCA  368 (434)
Q Consensus       301 ~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~  368 (434)
                      ..+ .+++|+.|.++++...  .. ...+..+++|++|+++++ .++.. ....+..+++|+.|+|++++
T Consensus       236 ~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          236 GSFHGLSSLKKLWVMNSQVS--LIERNAFDGLASLVELNLAHN-NLSSL-PHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             GGGTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSS-CCSCC-CTTSSTTCTTCCEEECCSSC
T ss_pred             ccccCccCCCEEEeCCCcCc--eECHHHhcCCCCCCEEECCCC-cCCcc-ChHHhccccCCCEEEccCCC
Confidence            112 3555666665554422  11 112344555666665555 22211 11112345556666655543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.33  E-value=4.1e-11  Score=121.61  Aligned_cols=254  Identities=11%  Similarity=0.040  Sum_probs=141.6

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      +++++|+++.+.        ...+|..  ...+ |++|++++|.+..      ..+|.....+++|++|++++      .
T Consensus        69 ~~L~~L~Ls~N~--------l~~lp~~--~l~~-L~~L~L~~N~l~~------~~~p~~~~~l~~L~~L~L~~------n  125 (520)
T 2z7x_B           69 QELEYLDLSHNK--------LVKISCH--PTVN-LKHLDLSFNAFDA------LPICKEFGNMSQLKFLGLST------T  125 (520)
T ss_dssp             TTCCEEECCSSC--------CCEEECC--CCCC-CSEEECCSSCCSS------CCCCGGGGGCTTCCEEEEEE------S
T ss_pred             cCCCEEecCCCc--------eeecCcc--ccCC-ccEEeccCCcccc------ccchhhhccCCcceEEEecC------c
Confidence            567777776554        3355555  3444 7777777776621      01234566777888888877      3


Q ss_pred             eeChHHHHHhcCCCc--ceeeeccccC--CCCc--c-----------------------------cccccccc-------
Q 046380          191 EMDAPRLNYFQCSGI--RDFDEAFVYR--PDHF--C-----------------------------CRFLEFKV-------  228 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L--~~L~l~~~~~--~~~~--~-----------------------------~~~l~~~~-------  228 (434)
                      .+..  ..+..+++|  ++|.+.+|..  ....  .                             +..++...       
T Consensus       126 ~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  203 (520)
T 2z7x_B          126 HLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED  203 (520)
T ss_dssp             SCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST
T ss_pred             ccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc
Confidence            3311  123445666  7777777654  1100  0                             00000000       


Q ss_pred             ----------eeeccCCceeEEEEEeEEeCchhHHHHh--ccCCCCcEEEeeccccc-cCCCCcch---hhcc-------
Q 046380          229 ----------ANENSMSSLETLVFSFMVLNDRTFESAL--SKFSNLETLKLLSSVFG-KLPSSLSS---AILK-------  285 (434)
Q Consensus       229 ----------~~~~~~p~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~-~~p~~~~~---~~~~-------  285 (434)
                                .....+++|+.|++++....+.......  ...++|+.|++++|.+. .+|..+..   ..++       
T Consensus       204 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l  283 (520)
T 2z7x_B          204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV  283 (520)
T ss_dssp             TTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEE
T ss_pred             cccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccc
Confidence                      0112355666666666655544333222  13468888888888776 45553210   1222       


Q ss_pred             -------------------CccEEEeecCCCCccee-ecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCc
Q 046380          286 -------------------KLKLVRMENCRFDGPVE-IHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLR  345 (434)
Q Consensus       286 -------------------~L~~L~l~~c~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~  345 (434)
                                         +|+.|+++++....... -.+++|++|+++++.... ........+++|++|.++++ .++
T Consensus       284 ~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N-~l~  361 (520)
T 2z7x_B          284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMN-QLK  361 (520)
T ss_dssp             EECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT-TTTTTCCCCSSCCEEECCSS-CCC
T ss_pred             cccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccCh-hhhhhhccCCCCCEEEccCC-ccC
Confidence                               35555555543222111 257889999988876441 12234567889999999988 444


Q ss_pred             H-HHHHHHHhcCCccceEEeeccccccccc---cccccccceeEeccCCc
Q 046380          346 N-KSLEELISACILLENLYLNSCAIPKGHL---EIYSLTLKTLVVHGCDH  391 (434)
Q Consensus       346 ~-~~l~~l~~~~p~Le~L~l~~~~~~~~~~---~~~~~~L~~L~l~~c~~  391 (434)
                      . ..+...+..+++|+.|++++|.+.....   .....+|+.|++++|..
T Consensus       362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l  411 (520)
T 2z7x_B          362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL  411 (520)
T ss_dssp             BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred             ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence            3 3455666789999999999988732111   11235677777777643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.32  E-value=7.7e-13  Score=140.87  Aligned_cols=253  Identities=17%  Similarity=0.109  Sum_probs=154.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccccc--ccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeeccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPR--VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMAL  187 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~  187 (434)
                      +++++|+++.+.       ....+|.  .+..+.+ |++|+|++|.+..       .++.. ...+++|++|++++    
T Consensus       100 ~~L~~L~Ls~n~-------l~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~-------~~~~~~~~~l~~L~~L~Ls~----  160 (768)
T 3rgz_A          100 ASLTSLDLSRNS-------LSGPVTTLTSLGSCSG-LKFLNVSSNTLDF-------PGKVSGGLKLNSLEVLDLSA----  160 (768)
T ss_dssp             TTCCEEECCSSE-------EEEEGGGGGGGGGCTT-CCEEECCSSEEEC-------CSSCCSCCCCTTCSEEECCS----
T ss_pred             CCCCEEECCCCc-------CCCcCCChHHHhCCCC-CCEEECcCCccCC-------cCCHHHhccCCCCCEEECCC----
Confidence            688888887655       2234555  5556666 9999999887721       01122 26788888998888    


Q ss_pred             ceEee-C-hHH--HHHhcCCCcceeeeccccCCCCcc---cccc----------cccceeeccCCceeEEEEEeEEeCch
Q 046380          188 QGFEM-D-APR--LNYFQCSGIRDFDEAFVYRPDHFC---CRFL----------EFKVANENSMSSLETLVFSFMVLNDR  250 (434)
Q Consensus       188 ~~~~~-~-~l~--~~~~~cp~L~~L~l~~~~~~~~~~---~~~l----------~~~~~~~~~~p~L~~L~l~~~~~~~~  250 (434)
                        +.+ + ...  ..+.++++|++|++++|.......   +..+          .........+++|++|+++++...+.
T Consensus       161 --n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~  238 (768)
T 3rgz_A          161 --NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD  238 (768)
T ss_dssp             --SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC
T ss_pred             --CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc
Confidence              444 3 211  226778888888888776532111   1111          11111134567777777776655432


Q ss_pred             hHHHHhccCCCCcEEEeecccccc-CCCCcchhhccCccEEEeecCCCCcce--ee-c-CCcccEEEeccccCcccceee
Q 046380          251 TFESALSKFSNLETLKLLSSVFGK-LPSSLSSAILKKLKLVRMENCRFDGPV--EI-H-SPNLETFVYKAGHGEIASFHF  325 (434)
Q Consensus       251 ~~~~~~~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~-~p~L~~L~l~~~~~~~~~~~~  325 (434)
                       ....+..+++|+.|++++|.+.. +|..    .+++|++|++++|.....+  .+ . +++|++|+++++.... ....
T Consensus       239 -~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~-~~p~  312 (768)
T 3rgz_A          239 -FSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG-AVPP  312 (768)
T ss_dssp             -HHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE-CCCG
T ss_pred             -ccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC-ccch
Confidence             23356778888888888887654 3431    5778888888876432111  12 2 5888888888865321 1223


Q ss_pred             cCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccc---ccccccccceeEeccCCc
Q 046380          326 GGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGH---LEIYSLTLKTLVVHGCDH  391 (434)
Q Consensus       326 ~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~---~~~~~~~L~~L~l~~c~~  391 (434)
                      .+..+++|++|+++++ .+....-...+..+++|+.|++++|.+....   +.....+|+.|++++|..
T Consensus       313 ~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l  380 (768)
T 3rgz_A          313 FFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF  380 (768)
T ss_dssp             GGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred             HHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence            4567889999999887 3332222233468899999999999873211   111223899999998753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.32  E-value=9.5e-12  Score=127.12  Aligned_cols=69  Identities=16%  Similarity=0.119  Sum_probs=35.3

Q ss_pred             HHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHH---HhccCCCCcEEEeeccc
Q 046380          198 NYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFES---ALSKFSNLETLKLLSSV  271 (434)
Q Consensus       198 ~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~  271 (434)
                      ....+++|+.|++++|........     ........++|+.|.+++....+.....   .+..+++|+.|++.+|.
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          191 FADILSSVRYLELRDTNLARFQFS-----PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             HHHSTTTBSEEEEESCBCTTCCCC-----CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             hHhhcccccEEEccCCcccccccc-----ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            345688888888888776432100     0011123456666666655544433221   22445555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.32  E-value=2.1e-12  Score=128.44  Aligned_cols=231  Identities=10%  Similarity=0.032  Sum_probs=159.5

Q ss_pred             CccccccccccCCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcce
Q 046380          130 DHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRD  207 (434)
Q Consensus       130 ~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~  207 (434)
                      ....+|..+..  . ++.|+|+++.+..        + +..+..+++|++|+|++      +.+ +.....+.++++|++
T Consensus        54 ~l~~iP~~~~~--~-l~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~Ls~------n~i~~i~~~~~~~l~~L~~  116 (440)
T 3zyj_A           54 NLREVPDGIST--N-TRLLNLHENQIQI--------IKVNSFKHLRHLEILQLSR------NHIRTIEIGAFNGLANLNT  116 (440)
T ss_dssp             CCSSCCSCCCT--T-CSEEECCSCCCCE--------ECTTTTSSCSSCCEEECCS------SCCCEECGGGGTTCSSCCE
T ss_pred             CcCcCCCCCCC--C-CcEEEccCCcCCe--------eCHHHhhCCCCCCEEECCC------CcCCccChhhccCCccCCE
Confidence            35567766542  3 9999999998822        1 14567899999999998      544 222345678999999


Q ss_pred             eeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc-ccccCCCCcchhhccC
Q 046380          208 FDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS-VFGKLPSSLSSAILKK  286 (434)
Q Consensus       208 L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~~  286 (434)
                      |++++|......        ......+++|++|+++++...... ...+..+++|+.|+++++ .+..++.. ....+++
T Consensus       117 L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~  186 (440)
T 3zyj_A          117 LELFDNRLTTIP--------NGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSN  186 (440)
T ss_dssp             EECCSSCCSSCC--------TTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSS
T ss_pred             EECCCCcCCeeC--------HhHhhccccCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccc
Confidence            999999764221        112346789999999876554321 124678999999999985 44445432 1345789


Q ss_pred             ccEEEeecCCCCcceee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEe
Q 046380          287 LKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYL  364 (434)
Q Consensus       287 L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l  364 (434)
                      |++|+++++.--....+ .+++|++|+++++...  .+ ...+..+++|++|.++++ .+.... ...+..+++|+.|+|
T Consensus       187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS--AIRPGSFQGLMHLQKLWMIQS-QIQVIE-RNAFDNLQSLVEINL  262 (440)
T ss_dssp             CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTC-CCCEEC-TTSSTTCTTCCEEEC
T ss_pred             cCeecCCCCcCccccccCCCcccCEEECCCCccC--ccChhhhccCccCCEEECCCC-ceeEEC-hhhhcCCCCCCEEEC
Confidence            99999998854333344 6899999999998643  22 234577899999999988 443221 122357899999999


Q ss_pred             ecccccccccc--ccccccceeEeccCCc
Q 046380          365 NSCAIPKGHLE--IYSLTLKTLVVHGCDH  391 (434)
Q Consensus       365 ~~~~~~~~~~~--~~~~~L~~L~l~~c~~  391 (434)
                      ++|.+..-...  ....+|+.|++++++.
T Consensus       263 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          263 AHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            99987432211  2246899999998864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.31  E-value=2e-12  Score=129.02  Aligned_cols=231  Identities=13%  Similarity=0.030  Sum_probs=158.2

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFD  209 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~  209 (434)
                      ...+|..+.  .+ |++|+|+++.+...       .+..+..+++|++|+|++      +.+ +.....+.++++|++|+
T Consensus        66 l~~iP~~~~--~~-l~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           66 LSEVPQGIP--SN-TRYLNLMENNIQMI-------QADTFRHLHHLEVLQLGR------NSIRQIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             CSSCCSCCC--TT-CSEEECCSSCCCEE-------CTTTTTTCTTCCEEECCS------SCCCEECTTTTTTCTTCCEEE
T ss_pred             cCccCCCCC--CC-ccEEECcCCcCceE-------CHHHcCCCCCCCEEECCC------CccCCcChhhccCcccCCEEE
Confidence            455666544  23 99999999987220       024567899999999998      554 22234567899999999


Q ss_pred             eccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc-ccccCCCCcchhhccCcc
Q 046380          210 EAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS-VFGKLPSSLSSAILKKLK  288 (434)
Q Consensus       210 l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~~L~  288 (434)
                      +++|.....        .......+++|++|+++++...... ...+..+++|+.|+++++ .++.+|.. ....+++|+
T Consensus       130 L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~  199 (452)
T 3zyi_A          130 LFDNWLTVI--------PSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLK  199 (452)
T ss_dssp             CCSSCCSBC--------CTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCC
T ss_pred             CCCCcCCcc--------ChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCC
Confidence            999976322        1112335889999999876654321 124678999999999985 45555532 134578999


Q ss_pred             EEEeecCCCCcceee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeec
Q 046380          289 LVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNS  366 (434)
Q Consensus       289 ~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~  366 (434)
                      +|+++++.--....+ .+++|++|+++++...  +. ...+..+++|++|.++++ .+.... ...+..+++|+.|+|++
T Consensus       200 ~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~  275 (452)
T 3zyi_A          200 YLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP--EIRPGSFHGLSSLKKLWVMNS-QVSLIE-RNAFDGLASLVELNLAH  275 (452)
T ss_dssp             EEECTTSCCSSCCCCTTCTTCCEEECTTSCCS--EECGGGGTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCS
T ss_pred             EEECCCCcccccccccccccccEEECcCCcCc--ccCcccccCccCCCEEEeCCC-cCceEC-HHHhcCCCCCCEEECCC
Confidence            999998754433344 6899999999997643  22 234567899999999988 343221 12236789999999999


Q ss_pred             ccccccccc--ccccccceeEeccCCc
Q 046380          367 CAIPKGHLE--IYSLTLKTLVVHGCDH  391 (434)
Q Consensus       367 ~~~~~~~~~--~~~~~L~~L~l~~c~~  391 (434)
                      |.+..-...  ....+|+.|++++++.
T Consensus       276 N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          276 NNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             SCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CcCCccChHHhccccCCCEEEccCCCc
Confidence            987431111  2246899999998863

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.31  E-value=4e-12  Score=121.36  Aligned_cols=242  Identities=11%  Similarity=0.052  Sum_probs=166.9

Q ss_pred             hcCCCeEEEEEeecCCCCCCCCcccccccccc-CCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecc
Q 046380          109 LRGKLQKLDLHVRDHVGNSLCDHYALPRVIFS-SGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMA  186 (434)
Q Consensus       109 ~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~  186 (434)
                      ..++++.|+++.+.        ...++...+. +.+ |++|+|++|.+..        + +.....+++|++|++++   
T Consensus        50 ~~~~l~~L~L~~n~--------i~~~~~~~~~~l~~-L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~---  109 (330)
T 1xku_A           50 LPPDTALLDLQNNK--------ITEIKDGDFKNLKN-LHTLILINNKISK--------ISPGAFAPLVKLERLYLSK---  109 (330)
T ss_dssp             CCTTCCEEECCSSC--------CCCBCTTTTTTCTT-CCEEECCSSCCCC--------BCTTTTTTCTTCCEEECCS---
T ss_pred             CCCCCeEEECCCCc--------CCEeChhhhccCCC-CCEEECCCCcCCe--------eCHHHhcCCCCCCEEECCC---
Confidence            34688999988765        4556664444 455 9999999998732        1 24567899999999998   


Q ss_pred             cceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCch-hHHHHhccCCCCcEE
Q 046380          187 LQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDR-TFESALSKFSNLETL  265 (434)
Q Consensus       187 ~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L  265 (434)
                         ..+..+..  ...++|++|.+++|.....        .......+++|+.|+++++..... .....+..+++|+.|
T Consensus       110 ---n~l~~l~~--~~~~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A          110 ---NQLKELPE--KMPKTLQELRVHENEITKV--------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  176 (330)
T ss_dssp             ---SCCSBCCS--SCCTTCCEEECCSSCCCBB--------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             ---CcCCccCh--hhcccccEEECCCCccccc--------CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence               44411111  1238999999999876322        111234689999999987765432 222356789999999


Q ss_pred             EeeccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCc
Q 046380          266 KLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGF  341 (434)
Q Consensus       266 ~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~  341 (434)
                      +++++.+..+|...    +++|++|+++++.--..  ..+ .+++|+.|+++++...  ... ..+..+++|++|+++++
T Consensus       177 ~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          177 RIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             ECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC--EECTTTGGGSTTCCEEECCSS
T ss_pred             ECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc--eeChhhccCCCCCCEEECCCC
Confidence            99999999888643    47999999998753222  233 6899999999987643  221 13467889999999998


Q ss_pred             cCCcHHHHHHHHhcCCccceEEeeccccccccccc--------cccccceeEeccCCcc
Q 046380          342 LGLRNKSLEELISACILLENLYLNSCAIPKGHLEI--------YSLTLKTLVVHGCDHL  392 (434)
Q Consensus       342 ~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~--------~~~~L~~L~l~~c~~l  392 (434)
                       .++  .+..-+..+++|+.|++++|.+..-....        ....++.|++.+++..
T Consensus       251 -~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          251 -KLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             -CCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             -cCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence             444  23233468899999999999874311111        1246778888887653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.30  E-value=2.3e-12  Score=137.21  Aligned_cols=173  Identities=17%  Similarity=0.171  Sum_probs=91.0

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccccccccc--CCCceeEEEEeeeeec-ccccccccccccccccCcccceEEEeeeccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFS--SGSFLVSLTIRHCKIG-AYQKNTVMGLTLSNFFNPSVRRLVVRGCMAL  187 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~--~~~~L~~L~L~~~~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~  187 (434)
                      +++++|+++.+.       ....+|..+..  ..+ |++|++++|.+. .        +|.....+++|++|++++    
T Consensus       368 ~~L~~L~Ls~N~-------l~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~--------~p~~l~~l~~L~~L~Ls~----  427 (768)
T 3rgz_A          368 ASLLTLDLSSNN-------FSGPILPNLCQNPKNT-LQELYLQNNGFTGK--------IPPTLSNCSELVSLHLSF----  427 (768)
T ss_dssp             TTCSEEECCSSE-------EEEECCTTTTCSTTCC-CCEEECCSSEEEEE--------CCGGGGGCTTCCEEECCS----
T ss_pred             cCCcEEEccCCC-------cCCCcChhhhhcccCC-ccEEECCCCccccc--------cCHHHhcCCCCCEEECcC----
Confidence            488888887654       22334444433  334 778888877762 2        234556777788888777    


Q ss_pred             ceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEE
Q 046380          188 QGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLK  266 (434)
Q Consensus       188 ~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  266 (434)
                        +.+ +.....+..+++|+.|.+.+|.....        .......+++|++|+++++...+. ....+..+++|+.|+
T Consensus       428 --N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~  496 (768)
T 3rgz_A          428 --NYLSGTIPSSLGSLSKLRDLKLWLNMLEGE--------IPQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWIS  496 (768)
T ss_dssp             --SEEESCCCGGGGGCTTCCEEECCSSCCCSC--------CCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEE
T ss_pred             --CcccCcccHHHhcCCCCCEEECCCCcccCc--------CCHHHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEE
Confidence              444 33344456677777777777765321        111223455566665555443321 111344555666666


Q ss_pred             eecccccc-CCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccc
Q 046380          267 LLSSVFGK-LPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAG  316 (434)
Q Consensus       267 l~~~~~~~-~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~  316 (434)
                      +++|.+.. +|.+  ...+++|+.|++++|.....+  .+ .+++|+.|+++++
T Consensus       497 L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          497 LSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             CCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             ccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            66555542 3332  233455555555555332111  12 3555555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.30  E-value=1.3e-11  Score=126.17  Aligned_cols=134  Identities=10%  Similarity=0.065  Sum_probs=72.4

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccccc-ccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPR-VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      +++++|+++.+.        ...+++ .+..+.+ |++|++++|.+..        ++ ..+..+++|++|++++     
T Consensus        26 ~~L~~L~Ls~n~--------l~~~~~~~~~~l~~-L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~Ls~-----   83 (549)
T 2z81_A           26 AAMKSLDLSFNK--------ITYIGHGDLRACAN-LQVLILKSSRINT--------IEGDAFYSLGSLEHLDLSD-----   83 (549)
T ss_dssp             TTCCEEECCSSC--------CCEECSSTTSSCTT-CCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTT-----
T ss_pred             CCccEEECcCCc--------cCccChhhhhcCCc-ccEEECCCCCcCc--------cChhhccccccCCEEECCC-----
Confidence            567777776654        334433 3333444 8888888876621        11 3456777888888877     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEe
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL  267 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  267 (434)
                       ..+ +.....+.++++|++|++++|......       .......+++|++|+++++..........+..+++|+.|++
T Consensus        84 -n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A           84 -NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG-------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI  155 (549)
T ss_dssp             -SCCCSCCHHHHTTCTTCCEEECTTCCCSSSC-------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             -CccCccCHHHhccCCCCcEEECCCCcccccc-------hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence             544 334445677788888888877653210       01122345566666665543111100112345555566666


Q ss_pred             ecccccc
Q 046380          268 LSSVFGK  274 (434)
Q Consensus       268 ~~~~~~~  274 (434)
                      ++|.+..
T Consensus       156 ~~n~l~~  162 (549)
T 2z81_A          156 KALSLRN  162 (549)
T ss_dssp             EETTCCE
T ss_pred             cCCcccc
Confidence            5554443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.30  E-value=1.5e-11  Score=127.13  Aligned_cols=151  Identities=17%  Similarity=0.086  Sum_probs=92.1

Q ss_pred             CCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEe
Q 046380          234 MSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVY  313 (434)
Q Consensus       234 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l  313 (434)
                      .++|++|+++++....     +....++|+.|++++|.++.+|.     .+++|+.|+++++. +..+.-..++|+.|.+
T Consensus       140 l~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L  208 (622)
T 3g06_A          140 PPGLQELSVSDNQLAS-----LPALPSELCKLWAYNNQLTSLPM-----LPSGLQELSVSDNQ-LASLPTLPSELYKLWA  208 (622)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSC-CSCCCCCCTTCCEEEC
T ss_pred             CCCCCEEECcCCcCCC-----cCCccCCCCEEECCCCCCCCCcc-----cCCCCcEEECCCCC-CCCCCCccchhhEEEC
Confidence            3667777666554332     12345667777777776666663     25677777777653 2222234577888877


Q ss_pred             ccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCccc
Q 046380          314 KAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLH  393 (434)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  393 (434)
                      .++...  .+.   ..+++|++|.++++ .++.  +.   ..+++|+.|++++|.+.  .++....+|+.|++++|.. +
T Consensus       209 ~~N~l~--~l~---~~~~~L~~L~Ls~N-~L~~--lp---~~l~~L~~L~Ls~N~L~--~lp~~~~~L~~L~Ls~N~L-~  274 (622)
T 3g06_A          209 YNNRLT--SLP---ALPSGLKELIVSGN-RLTS--LP---VLPSELKELMVSGNRLT--SLPMLPSGLLSLSVYRNQL-T  274 (622)
T ss_dssp             CSSCCS--SCC---CCCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCC-C
T ss_pred             cCCccc--ccC---CCCCCCCEEEccCC-ccCc--CC---CCCCcCcEEECCCCCCC--cCCcccccCcEEeCCCCCC-C
Confidence            776533  211   23478899998887 4432  11   56788999999998873  3333567899999998843 3


Q ss_pred             eee---EecCceEEEEEee
Q 046380          394 FAE---IQAPQLLYFQYVG  409 (434)
Q Consensus       394 ~~~---i~~~~l~~~~~~~  409 (434)
                      .+.   ...+++..+...+
T Consensus       275 ~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          275 RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             SCCGGGGGSCTTCEEECCS
T ss_pred             cCCHHHhhccccCEEEecC
Confidence            321   1235566666655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.28  E-value=1.3e-11  Score=116.78  Aligned_cols=125  Identities=18%  Similarity=0.182  Sum_probs=87.5

Q ss_pred             CCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEE
Q 046380          234 MSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFV  312 (434)
Q Consensus       234 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~  312 (434)
                      +++|++|+++++...+..   .+..+++|+.|++++|.+..++.   ...+++|++|++++|.--....+ .+++|+.|+
T Consensus       106 l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~  179 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK  179 (308)
T ss_dssp             CTTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChhhcCCCCCCEEE
Confidence            444555544443333321   26788999999999998888764   45688999999998743322225 689999999


Q ss_pred             eccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccc
Q 046380          313 YKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPK  371 (434)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~  371 (434)
                      ++++...  .+. ....+++|++|+++++ .+....  . +..+++|+.|++++|.+..
T Consensus       180 l~~n~l~--~~~-~l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          180 ADDNKIS--DIS-PLASLPNLIEVHLKNN-QISDVS--P-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCSSCCC--CCG-GGGGCTTCCEEECTTS-CCCBCG--G-GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCccC--cCh-hhcCCCCCCEEEccCC-ccCccc--c-ccCCCCCCEEEccCCeeec
Confidence            9987643  221 2567889999999988 443322  1 4689999999999998743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.28  E-value=2.6e-12  Score=125.50  Aligned_cols=251  Identities=13%  Similarity=0.084  Sum_probs=158.6

Q ss_pred             cccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecc--cceEee-C---hHHHHHhcCCCc
Q 046380          132 YALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMA--LQGFEM-D---APRLNYFQCSGI  205 (434)
Q Consensus       132 ~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~--~~~~~~-~---~l~~~~~~cp~L  205 (434)
                      ..++..+..+.+ |++|+|++|.+..   .....++.....+++|++|+|++|..  +.+ .+ .   .+...+..+++|
T Consensus        22 ~~l~~~l~~~~~-L~~L~L~~n~i~~---~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~-~~~~~~~~l~~~l~~~~~L   96 (386)
T 2ca6_A           22 KSVFAVLLEDDS-VKEIVLSGNTIGT---EAARWLSENIASKKDLEIAEFSDIFTGRVKD-EIPEALRLLLQALLKCPKL   96 (386)
T ss_dssp             HTTSHHHHHCSC-CCEEECTTSEECH---HHHHHHHHTTTTCTTCCEEECCSCCTTSCGG-GSHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHhcCCC-ccEEECCCCCCCH---HHHHHHHHHHHhCCCccEEeCcccccCcccc-chhHHHHHHHHHHhhCCcc
Confidence            344555555666 9999999998832   00111223355789999999988421  110 00 1   233345789999


Q ss_pred             ceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhH---HHHhccC---------CCCcEEEeeccccc
Q 046380          206 RDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF---ESALSKF---------SNLETLKLLSSVFG  273 (434)
Q Consensus       206 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~---~~~~~~~---------~~L~~L~l~~~~~~  273 (434)
                      ++|++++|.......    ..+......+++|++|+++++...+...   ...+..+         ++|++|++++|.+.
T Consensus        97 ~~L~Ls~n~l~~~~~----~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           97 HTVRLSDNAFGPTAQ----EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CEEECCSCCCCTTTH----HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             cEEECCCCcCCHHHH----HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            999999987743211    0112233567899999998877654332   2223344         89999999998875


Q ss_pred             c--CCCC-cchhhccCccEEEeecCCCCc-----ce--ee-cCCcccEEEeccccCccc---ceeecCCCCCCccEEEEc
Q 046380          274 K--LPSS-LSSAILKKLKLVRMENCRFDG-----PV--EI-HSPNLETFVYKAGHGEIA---SFHFGGRGFGNIKTLAVN  339 (434)
Q Consensus       274 ~--~p~~-~~~~~~~~L~~L~l~~c~~l~-----~~--~~-~~p~L~~L~l~~~~~~~~---~~~~~~~~~~~Lk~L~l~  339 (434)
                      .  +|.. -....+++|++|++++|.--.     ..  .+ .+++|+.|+++++..+..   .+......+++|++|.++
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~  252 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  252 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence            3  2210 012357799999999874221     11  23 689999999988765321   223345678899999999


Q ss_pred             CccCCcHHHHHHHHh---c--CCccceEEeeccccccc---cc-c---ccccccceeEeccCCcc
Q 046380          340 GFLGLRNKSLEELIS---A--CILLENLYLNSCAIPKG---HL-E---IYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       340 ~~~~~~~~~l~~l~~---~--~p~Le~L~l~~~~~~~~---~~-~---~~~~~L~~L~l~~c~~l  392 (434)
                      ++ .+++.+...+..   .  +++|+.|+|++|.+...   .+ .   ...++|+.|++++|+.-
T Consensus       253 ~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          253 DC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             TC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            98 677765544433   3  89999999999988441   12 1   12478999999988644

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.28  E-value=1.7e-12  Score=124.06  Aligned_cols=100  Identities=13%  Similarity=0.188  Sum_probs=43.9

Q ss_pred             CCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEE
Q 046380          261 NLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTL  336 (434)
Q Consensus       261 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L  336 (434)
                      +|+.|+++++.+..+|..+    +++|++|+++++.-...  ..+ .+++|+.|+++++...  +.. ..+..+++|++|
T Consensus       173 ~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L  246 (332)
T 2ft3_A          173 KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR--MIENGSLSFLPTLREL  246 (332)
T ss_dssp             CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC--CCCTTGGGGCTTCCEE
T ss_pred             ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC--cCChhHhhCCCCCCEE
Confidence            4555555555555444322    24555555554421111  112 3555555555554322  111 112344555555


Q ss_pred             EEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          337 AVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       337 ~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      +++++ .++  .+..-+..+++|+.|+++++.+
T Consensus       247 ~L~~N-~l~--~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          247 HLDNN-KLS--RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             ECCSS-CCC--BCCTTGGGCTTCCEEECCSSCC
T ss_pred             ECCCC-cCe--ecChhhhcCccCCEEECCCCCC
Confidence            55555 222  1111134555555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.27  E-value=4.5e-13  Score=126.59  Aligned_cols=226  Identities=16%  Similarity=0.156  Sum_probs=127.1

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      +++++|+++.+.        ...+|..+|....+|++|+|+++.+...     ...+.....+++|++|++++      .
T Consensus        28 ~~l~~L~L~~n~--------l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~~~L~~L~Ls~------n   88 (306)
T 2z66_A           28 SSATRLELESNK--------LQSLPHGVFDKLTQLTKLSLSSNGLSFK-----GCCSQSDFGTTSLKYLDLSF------N   88 (306)
T ss_dssp             TTCCEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCEE-----EEEEHHHHSCSCCCEEECCS------C
T ss_pred             CCCCEEECCCCc--------cCccCHhHhhccccCCEEECCCCccCcc-----cCcccccccccccCEEECCC------C
Confidence            567777776554        4466666554433388888887765210     00013344677888888877      3


Q ss_pred             eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380          191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS  270 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (434)
                      .+..+...+..+++|++|+++++.......       ......+++|++|+++++...... ...+..+++|+.|++++|
T Consensus        89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n  160 (306)
T 2z66_A           89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGN  160 (306)
T ss_dssp             SEEEEEEEEETCTTCCEEECTTSEEESSTT-------TTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTC
T ss_pred             ccccChhhcCCCCCCCEEECCCCccccccc-------chhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCCC
Confidence            331111124557788888887776532100       012335677777777654432211 123566778888888877


Q ss_pred             cccc--CCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCccCC
Q 046380          271 VFGK--LPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFLGL  344 (434)
Q Consensus       271 ~~~~--~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~~~  344 (434)
                      .+..  .|..  ...+++|++|+++++.--..  ..+ .+++|++|+++++...  +.. ..+..+++|++|+++++ .+
T Consensus       161 ~l~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N-~l  235 (306)
T 2z66_A          161 SFQENFLPDI--FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLN-HI  235 (306)
T ss_dssp             EEGGGEECSC--CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS--BCCSGGGTTCTTCCEEECTTS-CC
T ss_pred             ccccccchhH--HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC--ccChhhccCcccCCEeECCCC-CC
Confidence            6654  3432  23466778888777642221  122 4677888888776533  111 12456678888888777 33


Q ss_pred             cHHHHHHHHhcC-CccceEEeecccc
Q 046380          345 RNKSLEELISAC-ILLENLYLNSCAI  369 (434)
Q Consensus       345 ~~~~l~~l~~~~-p~Le~L~l~~~~~  369 (434)
                      ....... +..+ ++|+.|+++++++
T Consensus       236 ~~~~~~~-~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          236 MTSKKQE-LQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CBCSSSS-CCCCCTTCCEEECTTCCE
T ss_pred             cccCHHH-HHhhhccCCEEEccCCCe
Confidence            3321111 1244 3788888887776

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.27  E-value=1.7e-12  Score=123.11  Aligned_cols=222  Identities=11%  Similarity=-0.014  Sum_probs=154.4

Q ss_pred             CCCeEEEEEe-ecCCCCCCCCccccccccccCCCceeEEEEeeeeec-ccccccccccccccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHV-RDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIG-AYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~-~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      +++++|+++. ..       ....+|..+....+ |++|+|++|.+. .        +|.....+++|++|++++     
T Consensus        76 ~~L~~L~L~~~n~-------l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~--------~p~~~~~l~~L~~L~Ls~-----  134 (313)
T 1ogq_A           76 PYLNFLYIGGINN-------LVGPIPPAIAKLTQ-LHYLYITHTNVSGA--------IPDFLSQIKTLVTLDFSY-----  134 (313)
T ss_dssp             TTCSEEEEEEETT-------EESCCCGGGGGCTT-CSEEEEEEECCEEE--------CCGGGGGCTTCCEEECCS-----
T ss_pred             CCCCeeeCCCCCc-------ccccCChhHhcCCC-CCEEECcCCeeCCc--------CCHHHhCCCCCCEEeCCC-----
Confidence            7999999984 33       23456777666677 999999999883 3        235677999999999999     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCC-ceeEEEEEeEEeCchhHHHHhccCCCCcEEE
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMS-SLETLVFSFMVLNDRTFESALSKFSNLETLK  266 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  266 (434)
                       ..+ +.+...+..+++|++|++++|....        ........++ +|+.|+++++...... ...+..++ |+.|+
T Consensus       135 -N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------~~p~~l~~l~~~L~~L~L~~N~l~~~~-~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          135 -NALSGTLPPSISSLPNLVGITFDGNRISG--------AIPDSYGSFSKLFTSMTISRNRLTGKI-PPTFANLN-LAFVD  203 (313)
T ss_dssp             -SEEESCCCGGGGGCTTCCEEECCSSCCEE--------ECCGGGGCCCTTCCEEECCSSEEEEEC-CGGGGGCC-CSEEE
T ss_pred             -CccCCcCChHHhcCCCCCeEECcCCcccC--------cCCHHHhhhhhcCcEEECcCCeeeccC-ChHHhCCc-ccEEE
Confidence             666 4455557789999999999987621        1122233455 8999999876554211 12345555 99999


Q ss_pred             eeccccccCCCCcchhhccCccEEEeecCCCCcce-ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCC
Q 046380          267 LLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV-EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGL  344 (434)
Q Consensus       267 l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~-~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~  344 (434)
                      +++|.+...+.. ....+++|+.|+++++...... .+ .+++|++|+++++.... .....+..+++|++|+++++ .+
T Consensus       204 Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N-~l  280 (313)
T 1ogq_A          204 LSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFN-NL  280 (313)
T ss_dssp             CCSSEEEECCGG-GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSS-EE
T ss_pred             CcCCcccCcCCH-HHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCC-cc
Confidence            999988754321 1235789999999987432221 13 58999999999876431 22334567899999999988 34


Q ss_pred             cHHHHHHHHhcCCccceEEeecccc
Q 046380          345 RNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       345 ~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      +.. ++.. ..+++|+.|++.+++.
T Consensus       281 ~~~-ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          281 CGE-IPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             EEE-CCCS-TTGGGSCGGGTCSSSE
T ss_pred             ccc-CCCC-ccccccChHHhcCCCC
Confidence            322 2222 5788999999999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.27  E-value=2.2e-11  Score=131.04  Aligned_cols=60  Identities=13%  Similarity=0.027  Sum_probs=27.6

Q ss_pred             CcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          306 PNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       306 p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ++|+.|+++++...  +. ...+..+++|++|+++++ .+... ....+..+++|+.|++++|.+
T Consensus       266 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~Ls~N~l  326 (844)
T 3j0a_A          266 SSVRHLDLSHGFVF--SLNSRVFETLKDLKVLNLAYN-KINKI-ADEAFYGLDNLQVLNLSYNLL  326 (844)
T ss_dssp             SCCCEEECTTCCCC--EECSCCSSSCCCCCEEEEESC-CCCEE-CTTTTTTCSSCCEEEEESCCC
T ss_pred             CCccEEECCCCccc--ccChhhhhcCCCCCEEECCCC-cCCCC-ChHHhcCCCCCCEEECCCCCC
Confidence            45555555554321  11 112344556666666655 22211 011124556666666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.26  E-value=1.1e-11  Score=133.42  Aligned_cols=243  Identities=15%  Similarity=0.085  Sum_probs=124.2

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|+++.+.        ...++...|....+|++|+|++|.+ ..        .+..+.++++|++|+|++      
T Consensus       266 ~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~~~~~~l~~L~~L~Ls~------  323 (844)
T 3j0a_A          266 SSVRHLDLSHGF--------VFSLNSRVFETLKDLKVLNLAYNKINKI--------ADEAFYGLDNLQVLNLSY------  323 (844)
T ss_dssp             SCCCEEECTTCC--------CCEECSCCSSSCCCCCEEEEESCCCCEE--------CTTTTTTCSSCCEEEEES------
T ss_pred             CCccEEECCCCc--------ccccChhhhhcCCCCCEEECCCCcCCCC--------ChHHhcCCCCCCEEECCC------
Confidence            578888886654        3444444454444488888888876 22        013456788888888887      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                      +.+ +.....+.++++|+.|++++|......        ......+++|+.|+++++....      +..+++|+.|+++
T Consensus       324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--------~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~  389 (844)
T 3j0a_A          324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ--------DQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLS  389 (844)
T ss_dssp             CCCSCCCSCSCSSCTTCCEEECCSCCCCCCC--------SSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEE
T ss_pred             CCCCccCHHHhcCCCCCCEEECCCCCCCccC--------hhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccC
Confidence            444 222334566788888888877653221        1112335666666666544332      1224555555555


Q ss_pred             ccccccCCCC--------------------cchhhccCccEEEeecCCCCcc----eeecCCcccEEEeccccCcc----
Q 046380          269 SSVFGKLPSS--------------------LSSAILKKLKLVRMENCRFDGP----VEIHSPNLETFVYKAGHGEI----  320 (434)
Q Consensus       269 ~~~~~~~p~~--------------------~~~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~l~~~~~~~----  320 (434)
                      +|.+..+|..                    .....+++|+.|+++++.--..    ....+++|+.|+++++....    
T Consensus       390 ~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~  469 (844)
T 3j0a_A          390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET  469 (844)
T ss_dssp             SCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS
T ss_pred             CCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccc
Confidence            5554444321                    0112355666666655432110    11135666666666544220    


Q ss_pred             cceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCc
Q 046380          321 ASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDH  391 (434)
Q Consensus       321 ~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~  391 (434)
                      +..+..+..+++|++|+++++ .++.. ....+..+++|+.|+|++|.+..-.......+|+.|+++++..
T Consensus       470 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          470 ELCWDVFEGLSHLQVLYLNHN-YLNSL-PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL  538 (844)
T ss_dssp             CCCSSCSSCBCCEECCCCCHH-HHTTC-CTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECC
T ss_pred             ccchhhhcCcccccEEECCCC-ccccc-ChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcC
Confidence            011122344556666666555 11110 1111245667777777777653211122225666666666643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.26  E-value=2.3e-11  Score=124.78  Aligned_cols=64  Identities=16%  Similarity=0.158  Sum_probs=32.0

Q ss_pred             cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcH-HHHHHHHhcCCccceEEeecccc
Q 046380          304 HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRN-KSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       304 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      .+++|++|+++++.... ........+++|++|.++++ .++. ..+...+..+++|+.|++++|.+
T Consensus       351 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l  415 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSL  415 (562)
T ss_dssp             SCCCCCEEECCSSCCCT-TTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred             CCCCceEEECCCCcccc-chhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcC
Confidence            45666666666654321 11122345566666666665 3322 12333344556666666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.25  E-value=4.3e-12  Score=124.10  Aligned_cols=247  Identities=17%  Similarity=0.098  Sum_probs=162.1

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|+++.+.        ...+++..+....+|++|++++|.+..        +++. +..+++|++|++++      
T Consensus        93 ~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~--------l~~~~~~~l~~L~~L~L~~------  150 (390)
T 3o6n_A           93 HTIQKLYMGFNA--------IRYLPPHVFQNVPLLTVLVLERNDLSS--------LPRGIFHNTPKLTTLSMSN------  150 (390)
T ss_dssp             TTCCEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred             CCcCEEECCCCC--------CCcCCHHHhcCCCCCCEEECCCCccCc--------CCHHHhcCCCCCcEEECCC------
Confidence            689999998765        445555544443349999999988732        2333 46789999999998      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccCCCCcc--ccccccc------ceeeccCCceeEEEEEeEEeCchhHHHHhccCC
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFC--CRFLEFK------VANENSMSSLETLVFSFMVLNDRTFESALSKFS  260 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~--~~~l~~~------~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~  260 (434)
                      ..+ +.....+..+++|++|.+++|.......  .+.+...      -......++|+.|+++++......    ....+
T Consensus       151 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~----~~~~~  226 (390)
T 3o6n_A          151 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR----GPVNV  226 (390)
T ss_dssp             SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE----CCCCS
T ss_pred             CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecc----ccccc
Confidence            444 2223346778999999999887643211  1100000      000112345666666654433211    13357


Q ss_pred             CCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCcccceeecCCCCCCccEEE
Q 046380          261 NLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLA  337 (434)
Q Consensus       261 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~  337 (434)
                      +|+.|++++|.+...+.   ...+++|++|+++++.--..  ..+ .+++|+.|+++++...  ++......+++|++|+
T Consensus       227 ~L~~L~l~~n~l~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~  301 (390)
T 3o6n_A          227 ELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLD  301 (390)
T ss_dssp             SCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC--EEECSSSCCTTCCEEE
T ss_pred             cccEEECCCCCCcccHH---HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc--ccCcccCCCCCCCEEE
Confidence            99999999998887653   45688999999998753322  233 5899999999997644  3444456789999999


Q ss_pred             EcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCcc
Q 046380          338 VNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       338 l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  392 (434)
                      ++++ .+..  +..-+..+++|+.|++++|.+..-. .....+|+.|++++++.-
T Consensus       302 L~~n-~l~~--~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          302 LSHN-HLLH--VERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             CCSS-CCCC--CGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEE
T ss_pred             CCCC-ccee--cCccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCCCcc
Confidence            9998 4432  2222356799999999999984332 223568999999998643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.24  E-value=8.1e-12  Score=126.84  Aligned_cols=65  Identities=12%  Similarity=0.034  Sum_probs=40.3

Q ss_pred             cCCcccEEEeccccC--c---ccceeecCCCCCCccEEEEcCccCCcHHHHHHHHh--cCCccceEEeecccc
Q 046380          304 HSPNLETFVYKAGHG--E---IASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELIS--ACILLENLYLNSCAI  369 (434)
Q Consensus       304 ~~p~L~~L~l~~~~~--~---~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~--~~p~Le~L~l~~~~~  369 (434)
                      .+++|+.++++++..  .   +.+.......+++|++|.+.++ .++...+..+..  ..++|+.|++++|.+
T Consensus       188 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  259 (520)
T 2z7x_B          188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKL  259 (520)
T ss_dssp             TCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred             cccceeeccccccccccccceeecchhhhccccchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeecccc
Confidence            367777777766430  0   1111124556788888888877 566655544433  357899999988876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.24  E-value=4.5e-11  Score=123.50  Aligned_cols=138  Identities=18%  Similarity=0.043  Sum_probs=95.6

Q ss_pred             cCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEE
Q 046380          233 SMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFV  312 (434)
Q Consensus       233 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~  312 (434)
                      ..++|+.|.++++....     +...+++|+.|++++|.+..+|..     +++|+.|.++++. +..+.-..++|+.|+
T Consensus       159 ~~~~L~~L~L~~N~l~~-----l~~~~~~L~~L~Ls~N~l~~l~~~-----~~~L~~L~L~~N~-l~~l~~~~~~L~~L~  227 (622)
T 3g06_A          159 LPSELCKLWAYNNQLTS-----LPMLPSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNR-LTSLPALPSGLKELI  227 (622)
T ss_dssp             CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSC-CSSCCCCCTTCCEEE
T ss_pred             ccCCCCEEECCCCCCCC-----CcccCCCCcEEECCCCCCCCCCCc-----cchhhEEECcCCc-ccccCCCCCCCCEEE
Confidence            45788888887765544     225678999999999988888753     5789999988864 223333468899999


Q ss_pred             eccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccc-cccccccceeEeccCCc
Q 046380          313 YKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHL-EIYSLTLKTLVVHGCDH  391 (434)
Q Consensus       313 l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~-~~~~~~L~~L~l~~c~~  391 (434)
                      ++++..+  ++.   ..+++|++|+++++ .++.  +.   ..+++|+.|++++|.+..-.. -...++|+.|++++++.
T Consensus       228 Ls~N~L~--~lp---~~l~~L~~L~Ls~N-~L~~--lp---~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          228 VSGNRLT--SLP---VLPSELKELMVSGN-RLTS--LP---MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCSSCCS--CCC---CCCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             ccCCccC--cCC---CCCCcCcEEECCCC-CCCc--CC---cccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence            9887644  222   45688999999887 4431  11   167889999999998732110 11245788999998875


Q ss_pred             c
Q 046380          392 L  392 (434)
Q Consensus       392 l  392 (434)
                      .
T Consensus       297 ~  297 (622)
T 3g06_A          297 S  297 (622)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.23  E-value=9.9e-12  Score=116.08  Aligned_cols=208  Identities=15%  Similarity=0.089  Sum_probs=131.7

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..+.  .+ |++|+++++.+..        ++ ..+..+++|++|++++      ..+ +.....+..+++|++|
T Consensus        23 l~~ip~~~~--~~-l~~L~l~~n~i~~--------~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L   85 (285)
T 1ozn_A           23 LQAVPVGIP--AA-SQRIFLHGNRISH--------VPAASFRACRNLTILWLHS------NVLARIDAAAFTGLALLEQL   85 (285)
T ss_dssp             CSSCCTTCC--TT-CSEEECTTSCCCE--------ECTTTTTTCTTCCEEECCS------SCCCEECTTTTTTCTTCCEE
T ss_pred             cccCCcCCC--CC-ceEEEeeCCcCCc--------cCHHHcccCCCCCEEECCC------CccceeCHhhcCCccCCCEE
Confidence            344454432  23 8888888887722        11 2456788888888887      444 2223345678888888


Q ss_pred             eecccc-CCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCc
Q 046380          209 DEAFVY-RPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKL  287 (434)
Q Consensus       209 ~l~~~~-~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L  287 (434)
                      ++++|. ....        .......+++|++|+++++...... ...+..+++|+.|++++|.+..+|... ...+++|
T Consensus        86 ~l~~n~~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L  155 (285)
T 1ozn_A           86 DLSDNAQLRSV--------DPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNL  155 (285)
T ss_dssp             ECCSCTTCCCC--------CTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTC
T ss_pred             eCCCCCCcccc--------CHHHhcCCcCCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhH-hccCCCc
Confidence            888886 3211        0112335678888888765544321 124567888999999888887766421 2356788


Q ss_pred             cEEEeecCCCCcce--ee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEE
Q 046380          288 KLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLY  363 (434)
Q Consensus       288 ~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~  363 (434)
                      ++|+++++.--...  .+ .+++|+.|+++++...  .. ...+..+++|++|+++++ .++.. ....+..+++|+.|+
T Consensus       156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~  231 (285)
T 1ozn_A          156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFAN-NLSAL-PTEALAPLRALQYLR  231 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSS-CCSCC-CHHHHTTCTTCCEEE
T ss_pred             cEEECCCCcccccCHHHhcCccccCEEECCCCccc--ccCHhHccCcccccEeeCCCC-cCCcC-CHHHcccCcccCEEe
Confidence            88888876422211  13 4788888888887643  22 224556788899988887 44332 223446788899999


Q ss_pred             eecccc
Q 046380          364 LNSCAI  369 (434)
Q Consensus       364 l~~~~~  369 (434)
                      ++++++
T Consensus       232 l~~N~~  237 (285)
T 1ozn_A          232 LNDNPW  237 (285)
T ss_dssp             CCSSCE
T ss_pred             ccCCCc
Confidence            888876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.23  E-value=3.8e-12  Score=120.98  Aligned_cols=214  Identities=14%  Similarity=0.141  Sum_probs=155.6

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      +++++|+++.+.        ....+. +....+ |++|++++|.+..            ....++|++|++++      .
T Consensus        58 ~~L~~L~Ls~n~--------l~~~~~-~~~l~~-L~~L~Ls~n~l~~------------l~~~~~L~~L~l~~------n  109 (317)
T 3o53_A           58 TKLELLNLSSNV--------LYETLD-LESLST-LRTLDLNNNYVQE------------LLVGPSIETLHAAN------N  109 (317)
T ss_dssp             TTCCEEECTTSC--------CEEEEE-ETTCTT-CCEEECCSSEEEE------------EEECTTCCEEECCS------S
T ss_pred             CcCCEEECCCCc--------CCcchh-hhhcCC-CCEEECcCCcccc------------ccCCCCcCEEECCC------C
Confidence            799999998765        333333 334455 9999999998832            12348999999998      4


Q ss_pred             ee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                      .+ +..   ...+++|++|.+++|.....        .......+++|+.|+++++.........+...+++|+.|++++
T Consensus       110 ~l~~~~---~~~~~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          110 NISRVS---CSRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             CCSEEE---ECCCSSCEEEECCSSCCCSG--------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             ccCCcC---ccccCCCCEEECCCCCCCCc--------cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            44 210   12478999999999987432        1122345789999999887666544343456789999999999


Q ss_pred             cccccCCCCcchhhccCccEEEeecCCCCcce-ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH
Q 046380          270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPV-EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK  347 (434)
Q Consensus       270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~-~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~  347 (434)
                      |.+..+|...   .+++|++|+++++.--... .+ .+++|+.|+++++...  .+......+++|+.|+++++ .+...
T Consensus       179 N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N-~~~~~  252 (317)
T 3o53_A          179 NFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGN-GFHCG  252 (317)
T ss_dssp             SCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTC-CCBHH
T ss_pred             CcCccccccc---ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCC-CccCc
Confidence            9988776422   3789999999987532221 23 6899999999998754  34445677899999999999 66656


Q ss_pred             HHHHHHhcCCccceEEeecccc
Q 046380          348 SLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       348 ~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      .+...+..++.|+.|++.++..
T Consensus       253 ~~~~~~~~~~~L~~l~l~~~~~  274 (317)
T 3o53_A          253 TLRDFFSKNQRVQTVAKQTVKK  274 (317)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHhccccceEEECCCchh
Confidence            7777888999999999987654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.21  E-value=1.2e-11  Score=127.79  Aligned_cols=247  Identities=17%  Similarity=0.096  Sum_probs=162.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|+++.+.        ...+|+..|....+|++|+|++|.+..        +++. +..+++|++|+|++      
T Consensus        99 ~~L~~L~L~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~--------l~~~~~~~l~~L~~L~Ls~------  156 (597)
T 3oja_B           99 HTIQKLYMGFNA--------IRYLPPHVFQNVPLLTVLVLERNDLSS--------LPRGIFHNTPKLTTLSMSN------  156 (597)
T ss_dssp             TTCCEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred             CCCCEEECCCCc--------CCCCCHHHHcCCCCCCEEEeeCCCCCC--------CCHHHhccCCCCCEEEeeC------
Confidence            689999998765        555666665544449999999998732        2344 46899999999998      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccCCCCcc--ccccccc------ceeeccCCceeEEEEEeEEeCchhHHHHhccCC
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFC--CRFLEFK------VANENSMSSLETLVFSFMVLNDRTFESALSKFS  260 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~--~~~l~~~------~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~  260 (434)
                      +.+ ......+..+++|+.|.+++|.......  .+.+..+      -......++|+.|+++++......    ....+
T Consensus       157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~----~~~~~  232 (597)
T 3oja_B          157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR----GPVNV  232 (597)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE----CSCCS
T ss_pred             CcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc----cccCC
Confidence            544 3333456778999999999987643211  1100000      000112345666665544332211    12346


Q ss_pred             CCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCcccceeecCCCCCCccEEE
Q 046380          261 NLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLA  337 (434)
Q Consensus       261 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~  337 (434)
                      +|+.|++++|.+...+.   ...+++|+.|+++++.--..  ..+ .+++|+.|+++++...  ++......+++|++|+
T Consensus       233 ~L~~L~L~~n~l~~~~~---l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~  307 (597)
T 3oja_B          233 ELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLD  307 (597)
T ss_dssp             CCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC--EEECSSSCCTTCCEEE
T ss_pred             CCCEEECCCCCCCCChh---hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC--CCCcccccCCCCcEEE
Confidence            89999999998876542   45688999999998754332  233 6899999999987644  3444456789999999


Q ss_pred             EcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCcc
Q 046380          338 VNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       338 l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  392 (434)
                      ++++ .+.  .++.-+..+++|+.|+|++|.+.... .....+|+.|++++++.-
T Consensus       308 Ls~N-~l~--~i~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          308 LSHN-HLL--HVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CCSS-CCC--CCGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEE
T ss_pred             CCCC-CCC--ccCcccccCCCCCEEECCCCCCCCcC-hhhcCCCCEEEeeCCCCC
Confidence            9988 443  22222357899999999999983332 233568999999998643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.21  E-value=2.4e-11  Score=113.47  Aligned_cols=199  Identities=12%  Similarity=0.058  Sum_probs=139.6

Q ss_pred             cCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccc
Q 046380          110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      .+++++|+++.+.        ...++...+....+|++|+++++.+..        + +.....+++|++|++++     
T Consensus        31 ~~~l~~L~l~~n~--------i~~~~~~~~~~~~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~-----   89 (285)
T 1ozn_A           31 PAASQRIFLHGNR--------ISHVPAASFRACRNLTILWLHSNVLAR--------IDAAAFTGLALLEQLDLSD-----   89 (285)
T ss_dssp             CTTCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCS-----
T ss_pred             CCCceEEEeeCCc--------CCccCHHHcccCCCCCEEECCCCccce--------eCHhhcCCccCCCEEeCCC-----
Confidence            3688999987655        455665545443349999999997722        1 24567899999999998     


Q ss_pred             eEe-e-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEE
Q 046380          189 GFE-M-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLK  266 (434)
Q Consensus       189 ~~~-~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  266 (434)
                       .. + +.....+..+++|++|.+++|.....        .......+++|++|+++++...... ...+..+++|+.|+
T Consensus        90 -n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           90 -NAQLRSVDPATFHGLGRLHTLHLDRCGLQEL--------GPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLF  159 (285)
T ss_dssp             -CTTCCCCCTTTTTTCTTCCEEECTTSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred             -CCCccccCHHHhcCCcCCCEEECCCCcCCEE--------CHhHhhCCcCCCEEECCCCcccccC-HhHhccCCCccEEE
Confidence             43 3 22234467799999999999987432        1122345789999999876554322 12457899999999


Q ss_pred             eeccccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCcc
Q 046380          267 LLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFL  342 (434)
Q Consensus       267 l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~  342 (434)
                      +++|.++.+|... ...+++|++|+++++.-...  ..+ .+++|+.|+++++...  +.. ..+..+++|++|+++++.
T Consensus       160 l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          160 LHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS--ALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCCCcccccCHHH-hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC--cCCHHHcccCcccCEEeccCCC
Confidence            9999888776421 34578999999998753322  223 5899999999997644  222 124678999999999884

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.19  E-value=5.8e-11  Score=112.27  Aligned_cols=185  Identities=14%  Similarity=0.145  Sum_probs=136.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|++..+.        ...+| .+..+.+ |++|++++|.+ +.         ++ ...+++|++|++++      
T Consensus        41 ~~L~~L~l~~~~--------i~~l~-~~~~l~~-L~~L~L~~n~i~~~---------~~-~~~l~~L~~L~L~~------   94 (308)
T 1h6u_A           41 DGITTLSAFGTG--------VTTIE-GVQYLNN-LIGLELKDNQITDL---------AP-LKNLTKITELELSG------   94 (308)
T ss_dssp             HTCCEEECTTSC--------CCCCT-TGGGCTT-CCEEECCSSCCCCC---------GG-GTTCCSCCEEECCS------
T ss_pred             CCcCEEEeeCCC--------ccCch-hhhccCC-CCEEEccCCcCCCC---------hh-HccCCCCCEEEccC------
Confidence            588999987655        33444 3444555 99999999988 43         23 77899999999998      


Q ss_pred             EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                      ..+..+. .+..+++|++|.+++|...+.         .. ...+++|++|+++++...+..   .+..+++|+.|++++
T Consensus        95 n~l~~~~-~~~~l~~L~~L~l~~n~l~~~---------~~-l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~  160 (308)
T 1h6u_A           95 NPLKNVS-AIAGLQSIKTLDLTSTQITDV---------TP-LAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGN  160 (308)
T ss_dssp             CCCSCCG-GGTTCTTCCEEECTTSCCCCC---------GG-GTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCS
T ss_pred             CcCCCch-hhcCCCCCCEEECCCCCCCCc---------hh-hcCCCCCCEEECCCCccCcCc---cccCCCCccEEEccC
Confidence            5552222 367799999999999987432         21 356789999999887655432   267899999999999


Q ss_pred             cccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380          270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF  341 (434)
Q Consensus       270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~  341 (434)
                      |.+..++.   ...+++|++|+++++.--....+ .+++|+.|+++++...  ... ....+++|+.|.++++
T Consensus       161 n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~--~~~-~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          161 AQVSDLTP---LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS--DVS-PLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             SCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC--BCG-GGTTCTTCCEEEEEEE
T ss_pred             CcCCCChh---hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccC--ccc-cccCCCCCCEEEccCC
Confidence            98887764   45688999999998753333335 7899999999998744  221 3577899999999988

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.19  E-value=6e-12  Score=120.31  Aligned_cols=237  Identities=13%  Similarity=0.080  Sum_probs=156.2

Q ss_pred             CCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceE
Q 046380          112 KLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       112 ~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      .++.++++...        ...+|..++  .. |++|+++++.+..        ++ .....+++|++|++++      .
T Consensus        34 ~l~~l~~~~~~--------l~~ip~~~~--~~-l~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~L~~------n   88 (332)
T 2ft3_A           34 HLRVVQCSDLG--------LKAVPKEIS--PD-TTLLDLQNNDISE--------LRKDDFKGLQHLYALVLVN------N   88 (332)
T ss_dssp             ETTEEECCSSC--------CSSCCSCCC--TT-CCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCS------S
T ss_pred             cCCEEECCCCC--------ccccCCCCC--CC-CeEEECCCCcCCc--------cCHhHhhCCCCCcEEECCC------C
Confidence            45666655433        456666554  34 9999999998722        12 3567899999999998      4


Q ss_pred             ee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                      .+ +.....+..+++|++|++++|.....         +.  ...++|++|+++++...... ...+..+++|+.|++++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---------~~--~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~  156 (332)
T 2ft3_A           89 KISKIHEKAFSPLRKLQKLYISKNHLVEI---------PP--NLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGG  156 (332)
T ss_dssp             CCCEECGGGSTTCTTCCEEECCSSCCCSC---------CS--SCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCS
T ss_pred             ccCccCHhHhhCcCCCCEEECCCCcCCcc---------Cc--cccccCCEEECCCCccCccC-HhHhCCCccCCEEECCC
Confidence            44 22244567899999999999877422         11  11279999999876554321 12467899999999999


Q ss_pred             ccccc--C-CCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCccCCc
Q 046380          270 SVFGK--L-PSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFLGLR  345 (434)
Q Consensus       270 ~~~~~--~-p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~~~~  345 (434)
                      +.++.  . |..  ...+ +|++|+++++.--.....-.++|++|+++++...  ... ..+..+++|++|+++++ .+.
T Consensus       157 n~l~~~~~~~~~--~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~L~~N-~l~  230 (332)
T 2ft3_A          157 NPLENSGFEPGA--FDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ--AIELEDLLRYSKLYRLGLGHN-QIR  230 (332)
T ss_dssp             CCCBGGGSCTTS--SCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCC--CCCTTSSTTCTTCSCCBCCSS-CCC
T ss_pred             CccccCCCCccc--ccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCC--ccCHHHhcCCCCCCEEECCCC-cCC
Confidence            98764  2 221  1112 8888888886422211113479999999887643  221 24567889999999988 333


Q ss_pred             HHHHHHHHhcCCccceEEeecccccccccc-ccccccceeEeccCCcc
Q 046380          346 NKSLEELISACILLENLYLNSCAIPKGHLE-IYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       346 ~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~-~~~~~L~~L~l~~c~~l  392 (434)
                      ... ...+..+++|+.|++++|.+..-... ....+|+.|+++++..-
T Consensus       231 ~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          231 MIE-NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CCC-TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred             cCC-hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence            221 11236889999999999987321111 23468999999998543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.18  E-value=6.6e-11  Score=114.00  Aligned_cols=185  Identities=17%  Similarity=0.178  Sum_probs=98.7

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..++.  + |++|+++++.+..        +++ ....+++|++|++++      ..+ +.....+.++++|++|
T Consensus        43 l~~iP~~~~~--~-L~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           43 LNSIPSGLTE--A-VKSLDLSNNRITY--------ISNSDLQRCVNLQALVLTS------NGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             CSSCCTTCCT--T-CCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTT------SCCCEECTTTTTTCTTCCEE
T ss_pred             cccccccccc--c-CcEEECCCCcCcc--------cCHHHhccCCCCCEEECCC------CccCccCHhhcCCCCCCCEE
Confidence            4455655443  3 7777777776621        112 456777777777776      333 2222335567777777


Q ss_pred             eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380          209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK  288 (434)
Q Consensus       209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~  288 (434)
                      ++++|.....                                . ...+..+++|++|++++|.+..+|..-....+++|+
T Consensus       106 ~Ls~n~l~~~--------------------------------~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A          106 DLSYNYLSNL--------------------------------S-SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             ECCSSCCSSC--------------------------------C-HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             ECCCCcCCcC--------------------------------C-HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            7777655211                                0 112455666666666666665555311123455666


Q ss_pred             EEEeecCCCCcce---ee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEE
Q 046380          289 LVRMENCRFDGPV---EI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLY  363 (434)
Q Consensus       289 ~L~l~~c~~l~~~---~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~  363 (434)
                      +|+++++..+..+   .+ .+++|++|+++++...  +. ......+++|++|.++++ .+. .....+...+++|+.|+
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n-~l~-~~~~~~~~~~~~L~~L~  228 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--SYEPKSLKSIQNVSHLILHMK-QHI-LLLEIFVDVTSSVECLE  228 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC--EECTTTTTTCSEEEEEEEECS-CST-THHHHHHHHTTTEEEEE
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcC--ccCHHHHhccccCCeecCCCC-ccc-cchhhhhhhcccccEEE
Confidence            6666665433332   12 4566666666665422  11 123445566666666666 222 11223334566666666


Q ss_pred             eecccc
Q 046380          364 LNSCAI  369 (434)
Q Consensus       364 l~~~~~  369 (434)
                      +++|.+
T Consensus       229 L~~n~l  234 (353)
T 2z80_A          229 LRDTDL  234 (353)
T ss_dssp             EESCBC
T ss_pred             CCCCcc
Confidence            666655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.18  E-value=8.5e-11  Score=120.54  Aligned_cols=127  Identities=18%  Similarity=0.094  Sum_probs=75.9

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|+++.+.        ...++...+....+|++|+|++|.+..        + +..+..+++|++|+|++      
T Consensus        52 ~~L~~L~Ls~N~--------i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~------  109 (562)
T 3a79_B           52 PRTKALSLSQNS--------ISELRMPDISFLSELRVLRLSHNRIRS--------LDFHVFLFNQDLEYLDVSH------  109 (562)
T ss_dssp             TTCCEEECCSSC--------CCCCCGGGTTTCTTCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECTT------
T ss_pred             CCcCEEECCCCC--------ccccChhhhccCCCccEEECCCCCCCc--------CCHHHhCCCCCCCEEECCC------
Confidence            677777777655        445554434333338888888877621        1 13456778888888887      


Q ss_pred             EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCC--cEEEe
Q 046380          190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNL--ETLKL  267 (434)
Q Consensus       190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l  267 (434)
                      ..+..+...  .+++|++|++++|......       .+.....+++|++|++++......    .+..+++|  +.|++
T Consensus       110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~-------~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L  176 (562)
T 3a79_B          110 NRLQNISCC--PMASLRHLDLSFNDFDVLP-------VCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILL  176 (562)
T ss_dssp             SCCCEECSC--CCTTCSEEECCSSCCSBCC-------CCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEE
T ss_pred             CcCCccCcc--ccccCCEEECCCCCccccC-------chHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEe
Confidence            433111111  5788888888887763211       012334678888888887665542    23444555  88887


Q ss_pred             ecccc
Q 046380          268 LSSVF  272 (434)
Q Consensus       268 ~~~~~  272 (434)
                      ++|.+
T Consensus       177 ~~n~l  181 (562)
T 3a79_B          177 DLVSY  181 (562)
T ss_dssp             EESSC
T ss_pred             ecccc
Confidence            77755

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.17  E-value=2.4e-11  Score=124.63  Aligned_cols=218  Identities=17%  Similarity=0.121  Sum_probs=156.2

Q ss_pred             CCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEe
Q 046380          112 KLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFE  191 (434)
Q Consensus       112 ~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~  191 (434)
                      ++++|++..+.        ...+|..  ...+ |++|++.++....         ......+++|++|++++      ..
T Consensus       305 ~L~~L~l~~n~--------~~~l~~~--~l~~-L~~L~l~~n~~~~---------~~~~~~~~~L~~L~l~~------n~  358 (570)
T 2z63_A          305 GWQHLELVNCK--------FGQFPTL--KLKS-LKRLTFTSNKGGN---------AFSEVDLPSLEFLDLSR------NG  358 (570)
T ss_dssp             CCSEEEEESCB--------CSSCCBC--BCSS-CCEEEEESCBSCC---------BCCCCBCTTCCEEECCS------SC
T ss_pred             CccEEeeccCc--------ccccCcc--cccc-cCEEeCcCCcccc---------ccccccCCCCCEEeCcC------Cc
Confidence            88999998876        3356653  3445 9999999998722         02337899999999998      44


Q ss_pred             e-C--hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          192 M-D--APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       192 ~-~--~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                      + .  .....+.++++|++|++++|...         ........+++|++|+++++..........+..+++|+.|+++
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  429 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI---------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS  429 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEE---------EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred             cCccccccccccccCccCEEECCCCccc---------cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence            4 2  23456788999999999998762         2222355789999999987665443222246789999999999


Q ss_pred             ccccccCCCCcchhhccCccEEEeecCCCC-cc--eee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccC
Q 046380          269 SSVFGKLPSSLSSAILKKLKLVRMENCRFD-GP--VEI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLG  343 (434)
Q Consensus       269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l-~~--~~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~  343 (434)
                      +|.+...+.. ....+++|++|++++|.-. ..  ..+ .+++|+.|+++++...  +. ...+..+++|++|+++++ .
T Consensus       430 ~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n-~  505 (570)
T 2z63_A          430 HTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMASN-Q  505 (570)
T ss_dssp             TSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSS-C
T ss_pred             CCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc--cCChhhhhcccCCCEEeCCCC-c
Confidence            9987764321 1345789999999998532 11  223 6899999999997644  22 234567899999999988 4


Q ss_pred             CcHHHHHHHHhcCCccceEEeecccc
Q 046380          344 LRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       344 ~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ++.. ....+..+++|+.|++++|++
T Consensus       506 l~~~-~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          506 LKSV-PDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             CSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCC-CHHHhhcccCCcEEEecCCcc
Confidence            4332 122346899999999999987

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.14  E-value=2.2e-10  Score=114.33  Aligned_cols=164  Identities=14%  Similarity=0.036  Sum_probs=74.8

Q ss_pred             HhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCC
Q 046380          199 YFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSS  278 (434)
Q Consensus       199 ~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~  278 (434)
                      +.++++|++|.+++|.....            ....++|++|+++++....-.   .+..+++|+.|++++|.+..+|..
T Consensus       191 ~~~l~~L~~L~l~~N~l~~l------------~~~~~~L~~L~l~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~l~~~  255 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKKL------------PDLPLSLESIVAGNNILEELP---ELQNLPFLTTIYADNNLLKTLPDL  255 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSC------------CCCCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSCCSC
T ss_pred             ccCCCCCCEEECCCCcCCcC------------CCCcCcccEEECcCCcCCccc---ccCCCCCCCEEECCCCcCCccccc
Confidence            34566666666666554221            011245666666554333211   144566666666666665555531


Q ss_pred             cchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcc-ccee-------------ecCCCC-CCccEEEEcCccC
Q 046380          279 LSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEI-ASFH-------------FGGRGF-GNIKTLAVNGFLG  343 (434)
Q Consensus       279 ~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~-------------~~~~~~-~~Lk~L~l~~~~~  343 (434)
                           +++|+.|+++++.-. .+.-..++|+.|+++++.... ....             .....+ ++|++|+++++ .
T Consensus       256 -----~~~L~~L~l~~N~l~-~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~  328 (454)
T 1jl5_A          256 -----PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-K  328 (454)
T ss_dssp             -----CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-C
T ss_pred             -----ccccCEEECCCCccc-ccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-c
Confidence                 345666665554311 111123455555555443210 0000             000111 35666666555 2


Q ss_pred             CcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCc
Q 046380          344 LRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDH  391 (434)
Q Consensus       344 ~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~  391 (434)
                      ++.     +...+++|+.|++++|.+.  .++....+|+.|+++++..
T Consensus       329 l~~-----lp~~~~~L~~L~L~~N~l~--~lp~~l~~L~~L~L~~N~l  369 (454)
T 1jl5_A          329 LIE-----LPALPPRLERLIASFNHLA--EVPELPQNLKQLHVEYNPL  369 (454)
T ss_dssp             CSC-----CCCCCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCC
T ss_pred             ccc-----ccccCCcCCEEECCCCccc--cccchhhhccEEECCCCCC
Confidence            221     1112456666666666552  1222345666666666643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.14  E-value=1.4e-10  Score=115.74  Aligned_cols=116  Identities=17%  Similarity=0.098  Sum_probs=53.5

Q ss_pred             cccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHH
Q 046380          174 PSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFE  253 (434)
Q Consensus       174 ~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~  253 (434)
                      ++|++|++++      ..+..+.. +.++++|++|++++|.....            -...++|++|+++++......  
T Consensus       131 ~~L~~L~L~~------n~l~~lp~-~~~l~~L~~L~l~~N~l~~l------------p~~~~~L~~L~L~~n~l~~l~--  189 (454)
T 1jl5_A          131 PLLEYLGVSN------NQLEKLPE-LQNSSFLKIIDVDNNSLKKL------------PDLPPSLEFIAAGNNQLEELP--  189 (454)
T ss_dssp             TTCCEEECCS------SCCSSCCC-CTTCTTCCEEECCSSCCSCC------------CCCCTTCCEEECCSSCCSSCC--
T ss_pred             CCCCEEECcC------CCCCCCcc-cCCCCCCCEEECCCCcCccc------------CCCcccccEEECcCCcCCcCc--
Confidence            4666666666      33311221 55566666776666654221            011235555555544333211  


Q ss_pred             HHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccc
Q 046380          254 SALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAG  316 (434)
Q Consensus       254 ~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~  316 (434)
                       .+..+++|+.|++++|.+..+|..     .++|++|+++++.--....+ .+++|++|+++++
T Consensus       190 -~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          190 -ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILEELPELQNLPFLTTIYADNN  247 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             -cccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCCcccccCCCCCCCEEECCCC
Confidence             234555555555555555544431     23555555554422111112 3445555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.14  E-value=5.2e-11  Score=112.75  Aligned_cols=198  Identities=15%  Similarity=0.065  Sum_probs=108.0

Q ss_pred             CCCceeEEEEeeeeec-cccccccccccccc--ccCcccceEEEeeecccceEee-C---hHHHHHh-cCCCcceeeecc
Q 046380          141 SGSFLVSLTIRHCKIG-AYQKNTVMGLTLSN--FFNPSVRRLVVRGCMALQGFEM-D---APRLNYF-QCSGIRDFDEAF  212 (434)
Q Consensus       141 ~~~~L~~L~L~~~~~~-~~~~~~~~~l~~~~--~~~~~L~~L~L~~c~~~~~~~~-~---~l~~~~~-~cp~L~~L~l~~  212 (434)
                      ..+ |++|+|++|.+. .        +|...  ..+++|++|+|++      ..+ +   .+..+.. ..++|++|++++
T Consensus        94 l~~-L~~L~L~~n~l~~~--------~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~l~~~~~~~L~~L~L~~  158 (312)
T 1wwl_A           94 ISG-LQELTLENLEVTGT--------APPPLLEATGPDLNILNLRN------VSWATRDAWLAELQQWLKPGLKVLSIAQ  158 (312)
T ss_dssp             TSC-CCEEEEEEEBCBSC--------CCCCSSSCCSCCCSEEEEES------CBCSSSSSHHHHHHTTCCTTCCEEEEES
T ss_pred             cCC-ccEEEccCCcccch--------hHHHHHHhcCCCccEEEccC------CCCcchhHHHHHHHHhhcCCCcEEEeeC
Confidence            344 888888888762 2        12333  6778888888887      444 2   1222111 137888888887


Q ss_pred             ccCCCCcccccccccceeeccCCceeEEEEEeEEeCch-hHHHHh--ccCCCCcEEEeeccccccCCCC--cchhhccCc
Q 046380          213 VYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDR-TFESAL--SKFSNLETLKLLSSVFGKLPSS--LSSAILKKL  287 (434)
Q Consensus       213 ~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~~~~~p~~--~~~~~~~~L  287 (434)
                      |......        ......+++|++|+++++...+. .....+  ..+++|++|++++|.+..+|..  .....+++|
T Consensus       159 N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  230 (312)
T 1wwl_A          159 AHSLNFS--------CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL  230 (312)
T ss_dssp             CSCCCCC--------TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred             CCCccch--------HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence            7763321        11223567777777776543321 122222  6777888888887776643320  011234677


Q ss_pred             cEEEeecCCCCcce---ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEE
Q 046380          288 KLVRMENCRFDGPV---EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLY  363 (434)
Q Consensus       288 ~~L~l~~c~~l~~~---~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~  363 (434)
                      ++|+++++.--...   .+ .+++|+.|+++++..+  .+.....  ++|++|+++++ .++..  +. +..+++|+.|+
T Consensus       231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~  302 (312)
T 1wwl_A          231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYN-RLDRN--PS-PDELPQVGNLS  302 (312)
T ss_dssp             SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSS-CCCSC--CC-TTTSCEEEEEE
T ss_pred             CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCC-CCCCC--hh-HhhCCCCCEEe
Confidence            77777765422211   11 3567777777766533  2221122  56777777666 33322  11 34666677777


Q ss_pred             eecccc
Q 046380          364 LNSCAI  369 (434)
Q Consensus       364 l~~~~~  369 (434)
                      ++++++
T Consensus       303 L~~N~l  308 (312)
T 1wwl_A          303 LKGNPF  308 (312)
T ss_dssp             CTTCTT
T ss_pred             ccCCCC
Confidence            766665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.13  E-value=1.6e-10  Score=109.46  Aligned_cols=202  Identities=11%  Similarity=0.051  Sum_probs=139.0

Q ss_pred             cCCCeEEEEEeecCCCCCCCCccccccccc-cCCCceeEEEEeeeeecccccccccccccccccC-----cccceEEEee
Q 046380          110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIF-SSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFN-----PSVRRLVVRG  183 (434)
Q Consensus       110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~  183 (434)
                      -+++++|+++.+.       ....+|..+| ....+|++|+|+++.+..        +|.....+     ++|++|++++
T Consensus        94 l~~L~~L~L~~n~-------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~l~~~~~~~L~~L~L~~  158 (312)
T 1wwl_A           94 ISGLQELTLENLE-------VTGTAPPPLLEATGPDLNILNLRNVSWAT--------RDAWLAELQQWLKPGLKVLSIAQ  158 (312)
T ss_dssp             TSCCCEEEEEEEB-------CBSCCCCCSSSCCSCCCSEEEEESCBCSS--------SSSHHHHHHTTCCTTCCEEEEES
T ss_pred             cCCccEEEccCCc-------ccchhHHHHHHhcCCCccEEEccCCCCcc--------hhHHHHHHHHhhcCCCcEEEeeC
Confidence            4799999999887       3345677653 333349999999998832        12333444     8999999999


Q ss_pred             ecccceEee-ChHHHHHhcCCCcceeeeccccCCCCccccccccc-ceeeccCCceeEEEEEeEEeCc--hhHHHHhccC
Q 046380          184 CMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFK-VANENSMSSLETLVFSFMVLND--RTFESALSKF  259 (434)
Q Consensus       184 c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~  259 (434)
                            ..+ ......+..+++|++|++++|.......     .. ......+++|++|+++++....  ......+..+
T Consensus       159 ------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          159 ------AHSLNFSCEQVRVFPALSTLDLSDNPELGERG-----LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR  227 (312)
T ss_dssp             ------CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-----HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred             ------CCCccchHHHhccCCCCCEEECCCCCcCcchH-----HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence                  555 3333456789999999999997521100     00 0111467999999999877663  2223455788


Q ss_pred             CCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEE
Q 046380          260 SNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAV  338 (434)
Q Consensus       260 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l  338 (434)
                      ++|+.|++++|.+...+..-....+++|++|+++++.-- .+.- -.++|++|+++++..+  +.. ....+++|++|++
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~--~~p-~~~~l~~L~~L~L  303 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLD--RNP-SPDELPQVGNLSL  303 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCC--SCC-CTTTSCEEEEEEC
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCC--CCh-hHhhCCCCCEEec
Confidence            999999999999887542111234679999999987532 2222 1279999999998754  332 2678899999999


Q ss_pred             cCc
Q 046380          339 NGF  341 (434)
Q Consensus       339 ~~~  341 (434)
                      +++
T Consensus       304 ~~N  306 (312)
T 1wwl_A          304 KGN  306 (312)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            987

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.12  E-value=2e-10  Score=104.26  Aligned_cols=190  Identities=12%  Similarity=0.059  Sum_probs=93.8

Q ss_pred             eeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEe-eC-hHHHHHhcCCCcceeeecc-ccCCCCcc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFE-MD-APRLNYFQCSGIRDFDEAF-VYRPDHFC  220 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~-~~-~l~~~~~~cp~L~~L~l~~-~~~~~~~~  220 (434)
                      |++|+++++.+..        +++ .+..+++|++|++++      .. +. -....+.++++|++|++++ +.....  
T Consensus        33 l~~L~l~~n~l~~--------i~~~~~~~l~~L~~L~l~~------n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i--   96 (239)
T 2xwt_C           33 TQTLKLIETHLRT--------IPSHAFSNLPNISRIYVSI------DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI--   96 (239)
T ss_dssp             CCEEEEESCCCSE--------ECTTTTTTCTTCCEEEEEC------CSSCCEECTTTEESCTTCCEEEEEEETTCCEE--
T ss_pred             ccEEEEeCCcceE--------ECHHHccCCCCCcEEeCCC------CCCcceeCHhHcCCCcCCcEEECCCCCCeeEc--
Confidence            6666666665521        112 344566666666666      32 21 1112345566666666665 333110  


Q ss_pred             cccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCc---EEEeecc-ccccCCCCcchhhccCcc-EEEeecC
Q 046380          221 CRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLE---TLKLLSS-VFGKLPSSLSSAILKKLK-LVRMENC  295 (434)
Q Consensus       221 ~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~p~~~~~~~~~~L~-~L~l~~c  295 (434)
                            .......+++|++|+++++......   .+..+++|+   .|++++| .++.+|... ...+++|+ +|+++++
T Consensus        97 ------~~~~f~~l~~L~~L~l~~n~l~~lp---~~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C           97 ------DPDALKELPLLKFLGIFNTGLKMFP---DLTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLYNN  166 (239)
T ss_dssp             ------CTTSEECCTTCCEEEEEEECCCSCC---CCTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEECCSC
T ss_pred             ------CHHHhCCCCCCCEEeCCCCCCcccc---ccccccccccccEEECCCCcchhhcCccc-ccchhcceeEEEcCCC
Confidence                  0111234566666666665443311   134455555   7777766 665554321 22355666 6666654


Q ss_pred             CCCcce---eecCCcccEEEecccc-Cccccee-ecCCCC-CCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccc
Q 046380          296 RFDGPV---EIHSPNLETFVYKAGH-GEIASFH-FGGRGF-GNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCA  368 (434)
Q Consensus       296 ~~l~~~---~~~~p~L~~L~l~~~~-~~~~~~~-~~~~~~-~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~  368 (434)
                      .- ..+   .+..++|++|+++++. ..  .+. ..+..+ ++|++|+++++ .++.-..    ..+++|+.|.+.++.
T Consensus       167 ~l-~~i~~~~~~~~~L~~L~L~~n~~l~--~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          167 GF-TSVQGYAFNGTKLDAVYLNKNKYLT--VIDKDAFGGVYSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNTW  237 (239)
T ss_dssp             CC-CEECTTTTTTCEEEEEECTTCTTCC--EECTTTTTTCSBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC-
T ss_pred             CC-cccCHhhcCCCCCCEEEcCCCCCcc--cCCHHHhhccccCCcEEECCCC-ccccCCh----hHhccCceeeccCcc
Confidence            31 121   1223567777776652 32  211 123455 67777777765 2221100    146677777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.11  E-value=1.4e-10  Score=109.59  Aligned_cols=222  Identities=13%  Similarity=0.066  Sum_probs=106.5

Q ss_pred             hhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCcccccccc--ccCCCceeEEEEeeeeecccccccccccc-cccccC
Q 046380           97 KHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVI--FSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFN  173 (434)
Q Consensus        97 ~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~  173 (434)
                      ...+....... ..+++++|+++.+.       .....|..+  ....+ |++|+|++|.+...    ...++ .....+
T Consensus        78 ~~~~~~~~~~~-~~~~L~~L~l~~n~-------l~~~~~~~~~~~~~~~-L~~L~Ls~n~i~~~----~~~~~~~~~~~~  144 (310)
T 4glp_A           78 AQLLVGALRVL-AYSRLKELTLEDLK-------ITGTMPPLPLEATGLA-LSSLRLRNVSWATG----RSWLAELQQWLK  144 (310)
T ss_dssp             HHHHHHHHHHH-HHSCCCEEEEESCC-------CBSCCCCCSSSCCCBC-CSSCEEESCCCSST----TSSHHHHHTTBC
T ss_pred             HHHHHHHHHhc-ccCceeEEEeeCCE-------eccchhhhhhhccCCC-CCEEEeecccccch----hhhhHHHHhhhc
Confidence            33444444443 33568888887655       222334433  22334 77777777766210    00000 112357


Q ss_pred             cccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchh-
Q 046380          174 PSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRT-  251 (434)
Q Consensus       174 ~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~-  251 (434)
                      ++|++|+|++      +.+ ......+..+++|++|++++|........    ........+|+|++|+++++...... 
T Consensus       145 ~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~  214 (310)
T 4glp_A          145 PGLKVLSIAQ------AHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL----MAALCPHKFPAIQNLALRNTGMETPTG  214 (310)
T ss_dssp             SCCCEEEEEC------CSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH----HTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred             cCCCEEEeeC------CCcchhhHHHhccCCCCCEEECCCCCCccchhh----hHHHhhhcCCCCCEEECCCCCCCchHH
Confidence            7777777776      433 22233445677777777777754210000    00011124556666666655443211 


Q ss_pred             -HHHHhccCCCCcEEEeeccccccC-CCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCC
Q 046380          252 -FESALSKFSNLETLKLLSSVFGKL-PSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRG  329 (434)
Q Consensus       252 -~~~~~~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~  329 (434)
                       ....+..+++|++|++++|.+... |..+  ..+.                  ..++|++|+++++..+  .+....  
T Consensus       215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~--~~~~------------------~~~~L~~L~Ls~N~l~--~lp~~~--  270 (310)
T 4glp_A          215 VCAALAAAGVQPHSLDLSHNSLRATVNPSA--PRCM------------------WSSALNSLNLSFAGLE--QVPKGL--  270 (310)
T ss_dssp             HHHHHHHHTCCCSSEECTTSCCCCCCCSCC--SSCC------------------CCTTCCCEECCSSCCC--SCCSCC--
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCccchhhH--Hhcc------------------CcCcCCEEECCCCCCC--chhhhh--
Confidence             111235556666666666655554 3211  0010                  1245666666555432  221111  


Q ss_pred             CCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          330 FGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       330 ~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      +++|++|+++++ .++.-  . ....+|+|+.|+++++++
T Consensus       271 ~~~L~~L~Ls~N-~l~~~--~-~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          271 PAKLRVLDLSSN-RLNRA--P-QPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CSCCSCEECCSC-CCCSC--C-CTTSCCCCSCEECSSTTT
T ss_pred             cCCCCEEECCCC-cCCCC--c-hhhhCCCccEEECcCCCC
Confidence            256677777666 33321  1 124667777777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.09  E-value=1.4e-10  Score=105.23  Aligned_cols=197  Identities=11%  Similarity=0.023  Sum_probs=131.8

Q ss_pred             CcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeecccc-CCCCcccccccccce-eeccCCceeEEEEEe-EEeC
Q 046380          173 NPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVY-RPDHFCCRFLEFKVA-NENSMSSLETLVFSF-MVLN  248 (434)
Q Consensus       173 ~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~-~~~~~~~~~l~~~~~-~~~~~p~L~~L~l~~-~~~~  248 (434)
                      .++|++|++++      ..+ .-....+.++++|++|++++|. ...         +.. ....+++|++|++++ ....
T Consensus        30 ~~~l~~L~l~~------n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~---------i~~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           30 PPSTQTLKLIE------THLRTIPSHAFSNLPNISRIYVSIDVTLQQ---------LESHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             CTTCCEEEEES------CCCSEECTTTTTTCTTCCEEEEECCSSCCE---------ECTTTEESCTTCCEEEEEEETTCC
T ss_pred             CCcccEEEEeC------CcceEECHHHccCCCCCcEEeCCCCCCcce---------eCHhHcCCCcCCcEEECCCCCCee
Confidence            34899999998      555 2223356789999999999996 421         111 234688999999987 4333


Q ss_pred             chhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc---EEEeecCCCCccee---e-cCCccc-EEEeccccCcc
Q 046380          249 DRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK---LVRMENCRFDGPVE---I-HSPNLE-TFVYKAGHGEI  320 (434)
Q Consensus       249 ~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~---~L~l~~c~~l~~~~---~-~~p~L~-~L~l~~~~~~~  320 (434)
                      ... ...+..+++|+.|++++|.+..+|.   ...+++|+   +|+++++..+..+.   + .+++|+ +|+++++... 
T Consensus        95 ~i~-~~~f~~l~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-  169 (239)
T 2xwt_C           95 YID-PDALKELPLLKFLGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-  169 (239)
T ss_dssp             EEC-TTSEECCTTCCEEEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-
T ss_pred             EcC-HHHhCCCCCCCEEeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-
Confidence            211 1245689999999999999988885   33466776   99999885555443   3 588999 9999887643 


Q ss_pred             cceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcC-CccceEEeeccccccccccccccccceeEeccCCcc
Q 046380          321 ASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISAC-ILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       321 ~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~-p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  392 (434)
                       .+.......++|++|.++++..+..- -...+..+ ++|+.|+++++.+. ........+|+.|.+.++..+
T Consensus       170 -~i~~~~~~~~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          170 -SVQGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTWTL  239 (239)
T ss_dssp             -EECTTTTTTCEEEEEECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC---
T ss_pred             -ccCHhhcCCCCCCEEEcCCCCCcccC-CHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCccCC
Confidence             22222222378999999988323311 11223567 99999999998873 222224568999998887643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.08  E-value=1.5e-10  Score=121.42  Aligned_cols=84  Identities=13%  Similarity=-0.011  Sum_probs=47.8

Q ss_pred             cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCccCCcHHH-------HHHHHhcCCccceEEeeccccccccc-
Q 046380          304 HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFLGLRNKS-------LEELISACILLENLYLNSCAIPKGHL-  374 (434)
Q Consensus       304 ~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~~~~~~~-------l~~l~~~~p~Le~L~l~~~~~~~~~~-  374 (434)
                      .+++|+.|+++++...  .+. ..+..+++|++|+++++ .++.-.       ....+..+++|+.|++++|.+..-.. 
T Consensus       478 ~l~~L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~  554 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIA--NINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE  554 (680)
T ss_dssp             TCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCCCCEEECCCCCCC--cCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH
Confidence            4666777777665432  221 12456677888888776 333210       00123567888888888887632111 


Q ss_pred             -cccccccceeEeccCC
Q 046380          375 -EIYSLTLKTLVVHGCD  390 (434)
Q Consensus       375 -~~~~~~L~~L~l~~c~  390 (434)
                       .....+|+.|+++++.
T Consensus       555 ~~~~l~~L~~L~Ls~N~  571 (680)
T 1ziw_A          555 VFKDLFELKIIDLGLNN  571 (680)
T ss_dssp             TTTTCTTCCEEECCSSC
T ss_pred             HcccccCcceeECCCCC
Confidence             1124578888887763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.07  E-value=1.4e-10  Score=107.59  Aligned_cols=198  Identities=13%  Similarity=0.095  Sum_probs=96.0

Q ss_pred             eeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCR  222 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~  222 (434)
                      |++|+++++.+..        +++ ....+++|++|++++      ..+ +.....+..+++|++|++++|.....    
T Consensus        30 l~~L~ls~n~l~~--------~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----   91 (276)
T 2z62_A           30 TKNLDLSFNPLRH--------LGSYSFFSFPELQVLDLSR------CEIQTIEDGAYQSLSHLSTLILTGNPIQSL----   91 (276)
T ss_dssp             CCEEECTTCCCCE--------ECTTTTTTCTTCSEEECTT------CCCCEECTTTTTTCTTCCEEECTTCCCCEE----
T ss_pred             ccEEECCCCcccc--------cCHhHhccccCCcEEECCC------CcCCccCHHHccCCcCCCEEECCCCccCcc----
Confidence            6666666665511        112 344566666666665      332 11122344566666666666654211    


Q ss_pred             cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--
Q 046380          223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--  300 (434)
Q Consensus       223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--  300 (434)
                          .......+++|++|+++++....... ..+..+++|+.|++++|.+..++..-....+++|++|+++++.--..  
T Consensus        92 ----~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           92 ----ALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             ----CTTTTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ----ChhhhcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence                00112245566666665443322110 02455666777777766665522111233456677777666532211  


Q ss_pred             eee-cCCccc----EEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          301 VEI-HSPNLE----TFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       301 ~~~-~~p~L~----~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ..+ .+++|+    +|+++++...  .+........+|++|+++++ .++.- ....+..+++|+.|+++++++
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~--~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMN--FIQPGAFKEIRLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCC--EECTTSSCSCCEEEEECCSS-CCSCC-CTTTTTTCCSCCEEECCSSCB
T ss_pred             HHhhhhhhccccceeeecCCCccc--ccCccccCCCcccEEECCCC-ceeec-CHhHhcccccccEEEccCCcc
Confidence            111 233333    5566555432  22222223346777777776 33311 122335677788888877765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.07  E-value=6.7e-11  Score=109.83  Aligned_cols=197  Identities=13%  Similarity=0.101  Sum_probs=128.5

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccccccccc-CCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFS-SGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~  188 (434)
                      +++++|+++.+.        ...++...+. ..+ |++|++++|.+..        +++ ....+++|++|++++     
T Consensus        28 ~~l~~L~ls~n~--------l~~~~~~~~~~l~~-L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~L~~-----   85 (276)
T 2z62_A           28 FSTKNLDLSFNP--------LRHLGSYSFFSFPE-LQVLDLSRCEIQT--------IEDGAYQSLSHLSTLILTG-----   85 (276)
T ss_dssp             TTCCEEECTTCC--------CCEECTTTTTTCTT-CSEEECTTCCCCE--------ECTTTTTTCTTCCEEECTT-----
T ss_pred             CCccEEECCCCc--------ccccCHhHhccccC-CcEEECCCCcCCc--------cCHHHccCCcCCCEEECCC-----
Confidence            578888887655        4555554444 445 9999999987722        112 456789999999988     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEe
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL  267 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  267 (434)
                       ..+ +.....+.++++|++|.+.+|......        ......+++|++|+++++..........+..+++|+.|++
T Consensus        86 -n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L  156 (276)
T 2z62_A           86 -NPIQSLALGAFSGLSSLQKLVAVETNLASLE--------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (276)
T ss_dssp             -CCCCEECTTTTTTCTTCCEEECTTSCCCCST--------TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             -CccCccChhhhcCCccccEEECCCCCccccC--------chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence             444 222344677899999999888764321        1123467889999988766554333345678899999999


Q ss_pred             eccccccCCCCcchhhccCcc----EEEeecCCCCc--ceeecCCcccEEEeccccCcccceee-cCCCCCCccEEEEcC
Q 046380          268 LSSVFGKLPSSLSSAILKKLK----LVRMENCRFDG--PVEIHSPNLETFVYKAGHGEIASFHF-GGRGFGNIKTLAVNG  340 (434)
Q Consensus       268 ~~~~~~~~p~~~~~~~~~~L~----~L~l~~c~~l~--~~~~~~p~L~~L~l~~~~~~~~~~~~-~~~~~~~Lk~L~l~~  340 (434)
                      ++|.++.++.. ....+.+|+    +|+++++.--.  ...+..++|++|+++++..+  ++.. .+..+++|++|.+++
T Consensus       157 s~N~l~~~~~~-~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          157 SSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             CSSCCCEECGG-GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS--CCCTTTTTTCCSCCEEECCS
T ss_pred             CCCCCCcCCHH-HhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee--ecCHhHhcccccccEEEccC
Confidence            99988776532 123345555    67777653221  11224568999998887643  2222 245688999999987


Q ss_pred             c
Q 046380          341 F  341 (434)
Q Consensus       341 ~  341 (434)
                      +
T Consensus       234 N  234 (276)
T 2z62_A          234 N  234 (276)
T ss_dssp             S
T ss_pred             C
Confidence            6

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.07  E-value=7.9e-11  Score=113.95  Aligned_cols=234  Identities=11%  Similarity=0.044  Sum_probs=123.5

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccccc----ccc-cCCCceeEEEEeeeeeccccccccccccccccc-----CcccceEE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPR----VIF-SSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFF-----NPSVRRLV  180 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~----~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~-----~~~L~~L~  180 (434)
                      +++++|+++.+.        ....+.    ..+ ....+|++|+|++|.+...      + +.....     +++|++|+
T Consensus        22 ~~L~~L~Ls~n~--------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~------~-~~~l~~~l~~~~~~L~~L~   86 (362)
T 3goz_A           22 HGVTSLDLSLNN--------LYSISTVELIQAFANTPASVTSLNLSGNSLGFK------N-SDELVQILAAIPANVTSLN   86 (362)
T ss_dssp             TTCCEEECTTSC--------GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS------C-HHHHHHHHHTSCTTCCEEE
T ss_pred             CCceEEEccCCC--------CChHHHHHHHHHHHhCCCceeEEECcCCCCCHH------H-HHHHHHHHhccCCCccEEE
Confidence            457777776554        223322    222 2331377888877766220      0 011122     27788888


Q ss_pred             EeeecccceEee-C----hHHHHHhcC-CCcceeeeccccCCCCcccccccccceeecc-CCceeEEEEEeEEeCchh--
Q 046380          181 VRGCMALQGFEM-D----APRLNYFQC-SGIRDFDEAFVYRPDHFCCRFLEFKVANENS-MSSLETLVFSFMVLNDRT--  251 (434)
Q Consensus       181 L~~c~~~~~~~~-~----~l~~~~~~c-p~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~-~p~L~~L~l~~~~~~~~~--  251 (434)
                      |++      +.+ +    .+...+..+ ++|++|++++|...+...    ..+...... .++|++|+++++...+..  
T Consensus        87 Ls~------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           87 LSG------NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS----SEFKQAFSNLPASITSLNLRGNDLGIKSSD  156 (362)
T ss_dssp             CCS------SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH----HHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred             CcC------CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH----HHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence            877      444 2    333444555 778888887776532211    000000111 247777777766555422  


Q ss_pred             -HHHHhccCC-CCcEEEeeccccccCCCCcch---hhc-cCccEEEeecCCCCc--c--e--ee-c-CCcccEEEecccc
Q 046380          252 -FESALSKFS-NLETLKLLSSVFGKLPSSLSS---AIL-KKLKLVRMENCRFDG--P--V--EI-H-SPNLETFVYKAGH  317 (434)
Q Consensus       252 -~~~~~~~~~-~L~~L~l~~~~~~~~p~~~~~---~~~-~~L~~L~l~~c~~l~--~--~--~~-~-~p~L~~L~l~~~~  317 (434)
                       +...+...+ +|++|++++|.++..+.....   ..+ ++|++|+++++.--.  .  +  .+ . .++|++|+++++.
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence             223334454 788888887776654321111   123 477777777764211  0  1  11 2 4578888877765


Q ss_pred             Ccccc---eeecCCCCCCccEEEEcCcc--CCcHHHHHHHHh---cCCccceEEeecccc
Q 046380          318 GEIAS---FHFGGRGFGNIKTLAVNGFL--GLRNKSLEELIS---ACILLENLYLNSCAI  369 (434)
Q Consensus       318 ~~~~~---~~~~~~~~~~Lk~L~l~~~~--~~~~~~l~~l~~---~~p~Le~L~l~~~~~  369 (434)
                      ....+   +......+++|++|.++++.  .++.+.+..+..   .+++|+.|+++++++
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            43221   12234566778888887773  355555555544   455666777777766

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.06  E-value=7.4e-11  Score=118.82  Aligned_cols=211  Identities=16%  Similarity=0.159  Sum_probs=151.9

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      ++++.|+++.+.        ....++ +....+ |++|+|++|.+..        + +   ..++|++|++++      +
T Consensus        58 ~~L~~L~Ls~N~--------l~~~~~-l~~l~~-L~~L~Ls~N~l~~--------l-~---~~~~L~~L~L~~------N  109 (487)
T 3oja_A           58 TKLELLNLSSNV--------LYETLD-LESLST-LRTLDLNNNYVQE--------L-L---VGPSIETLHAAN------N  109 (487)
T ss_dssp             TTCCEEECTTSC--------CEEEEE-CTTCTT-CCEEECCSSEEEE--------E-E---ECTTCCEEECCS------S
T ss_pred             CCCCEEEeeCCC--------CCCCcc-cccCCC-CCEEEecCCcCCC--------C-C---CCCCcCEEECcC------C
Confidence            799999998765        333333 334455 9999999998832        1 1   238999999998      4


Q ss_pred             ee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                      .+ +..   ...+++|+.|.+++|.....        .......+++|+.|+++++...+.....+...+++|+.|++++
T Consensus       110 ~l~~~~---~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          110 NISRVS---CSRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             CCCCEE---ECCCSSCEEEECCSSCCCSG--------GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             cCCCCC---ccccCCCCEEECCCCCCCCC--------CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            44 211   12479999999999987432        1222345899999999887666543333445789999999999


Q ss_pred             cccccCCCCcchhhccCccEEEeecCCCCcce-ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHH
Q 046380          270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPV-EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNK  347 (434)
Q Consensus       270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~-~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~  347 (434)
                      |.+..+|..   ..+++|+.|+++++.--... .+ .+++|+.|+++++...  +++.....+++|+.|+++++ .+...
T Consensus       179 N~l~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~l~~N-~l~c~  252 (487)
T 3oja_A          179 NFIYDVKGQ---VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGN-GFHCG  252 (487)
T ss_dssp             SCCCEEECC---CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTC-CBCHH
T ss_pred             Ccccccccc---ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc--ccchhhccCCCCCEEEcCCC-CCcCc
Confidence            998877642   24789999999987532221 23 6899999999998754  44445667899999999998 55555


Q ss_pred             HHHHHHhcCCccceEEeec
Q 046380          348 SLEELISACILLENLYLNS  366 (434)
Q Consensus       348 ~l~~l~~~~p~Le~L~l~~  366 (434)
                      .+...+..++.|+.+++..
T Consensus       253 ~~~~~~~~l~~L~~l~~~~  271 (487)
T 3oja_A          253 TLRDFFSKNQRVQTVAKQT  271 (487)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHHhCCCCcEEeccc
Confidence            6777778889999888763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.05  E-value=2.9e-11  Score=117.05  Aligned_cols=236  Identities=12%  Similarity=0.090  Sum_probs=146.5

Q ss_pred             CceeEEEEeeeeecccccccccccccccccCc-ccceEEEeeecccceEee-C----hHHHHHhcC-CCcceeeeccccC
Q 046380          143 SFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNP-SVRRLVVRGCMALQGFEM-D----APRLNYFQC-SGIRDFDEAFVYR  215 (434)
Q Consensus       143 ~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~c~~~~~~~~-~----~l~~~~~~c-p~L~~L~l~~~~~  215 (434)
                      ++|++|+|++|.+...   ....+......++ +|++|+|++      +.+ +    .+...+..+ ++|++|++++|..
T Consensus        22 ~~L~~L~Ls~n~l~~~---~~~~l~~~l~~~~~~L~~L~Ls~------N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSI---STVELIQAFANTPASVTSLNLSG------NSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             TTCCEEECTTSCGGGS---CHHHHHHHHHTCCTTCCEEECCS------SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             CCceEEEccCCCCChH---HHHHHHHHHHhCCCceeEEECcC------CCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            3399999999988320   0000012334677 899999999      555 3    344444444 9999999999987


Q ss_pred             CCCcccccccccceeeccC-CceeEEEEEeEEeCchhHH---HHhcc-CCCCcEEEeeccccccCCCCcch---hhcc-C
Q 046380          216 PDHFCCRFLEFKVANENSM-SSLETLVFSFMVLNDRTFE---SALSK-FSNLETLKLLSSVFGKLPSSLSS---AILK-K  286 (434)
Q Consensus       216 ~~~~~~~~l~~~~~~~~~~-p~L~~L~l~~~~~~~~~~~---~~~~~-~~~L~~L~l~~~~~~~~p~~~~~---~~~~-~  286 (434)
                      .+...    ..+....... ++|++|+++++...+....   ..+.. .++|++|++++|.++.......+   ..++ +
T Consensus        93 ~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~  168 (362)
T 3goz_A           93 SYKSS----DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN  168 (362)
T ss_dssp             GGSCH----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ChHHH----HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence            43211    0011111223 7999999998876654333   23444 46999999999988754321111   1233 8


Q ss_pred             ccEEEeecCCCCcce--e----e-cC-CcccEEEeccccCcccce---eecCCC-CCCccEEEEcCccCCcH---HHHHH
Q 046380          287 LKLVRMENCRFDGPV--E----I-HS-PNLETFVYKAGHGEIASF---HFGGRG-FGNIKTLAVNGFLGLRN---KSLEE  351 (434)
Q Consensus       287 L~~L~l~~c~~l~~~--~----~-~~-p~L~~L~l~~~~~~~~~~---~~~~~~-~~~Lk~L~l~~~~~~~~---~~l~~  351 (434)
                      |++|++++|.--...  .    + .+ ++|++|+++++.....+.   ...... .++|++|+++++ .+++   +.+..
T Consensus       169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~  247 (362)
T 3goz_A          169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKL  247 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHH
T ss_pred             ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHH
Confidence            999999987422111  1    1 24 599999999987543221   112222 468999999998 5555   45566


Q ss_pred             HHhcCCccceEEeeccccc---ccccc------ccccccceeEeccCCcc
Q 046380          352 LISACILLENLYLNSCAIP---KGHLE------IYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       352 l~~~~p~Le~L~l~~~~~~---~~~~~------~~~~~L~~L~l~~c~~l  392 (434)
                      +.+.+++|+.|++++|.+.   .....      ....+|+.|++++++.-
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            6678899999999999831   11111      12346888888887643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.04  E-value=2.5e-10  Score=119.75  Aligned_cols=248  Identities=14%  Similarity=0.075  Sum_probs=156.3

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccC---CCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSS---GSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMA  186 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~---~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~  186 (434)
                      +++++|+++.+.-      ....++...|..   .+ |+.|++++|.+ ..        .+.....+++|++|++++   
T Consensus       353 ~~L~~L~Ls~n~~------~~~~l~~~~f~~~~~~~-L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~---  414 (680)
T 1ziw_A          353 INLKYLSLSNSFT------SLRTLTNETFVSLAHSP-LHILNLTKNKISKI--------ESDAFSWLGHLEVLDLGL---  414 (680)
T ss_dssp             TTCCEEECTTCBS------CCCEECTTTTGGGTTSC-CCEEECTTSCCCEE--------CTTTTTTCTTCCEEECCS---
T ss_pred             cCCcEEECCCCch------hhhhcchhhhcccccCc-CceEECCCCCCCeE--------ChhhhhCCCCCCEEeCCC---
Confidence            6899999875430      122333333322   34 99999999877 22        123556889999999998   


Q ss_pred             cceEee-ChH-HHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCc-hhHHHHhccCCCCc
Q 046380          187 LQGFEM-DAP-RLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLND-RTFESALSKFSNLE  263 (434)
Q Consensus       187 ~~~~~~-~~l-~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~~L~  263 (434)
                         ..+ +.+ ...+.++++|++|.+++|.....        .......+|+|+.|+++++.... ......+..+++|+
T Consensus       415 ---N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          415 ---NEIGQELTGQEWRGLENIFEIYLSYNKYLQL--------TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             ---SCCEEECCSGGGTTCTTCCEEECCSCSEEEC--------CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             ---CcCccccCcccccCcccccEEecCCCCccee--------ChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence               443 222 24567899999999998875221        11122357888888887654432 11222456788899


Q ss_pred             EEEeeccccccCCCCcchhhccCccEEEeecCCCCcc----------eee-cCCcccEEEeccccCcccceee-cCCCCC
Q 046380          264 TLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP----------VEI-HSPNLETFVYKAGHGEIASFHF-GGRGFG  331 (434)
Q Consensus       264 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~----------~~~-~~p~L~~L~l~~~~~~~~~~~~-~~~~~~  331 (434)
                      .|++++|.+..+|... ...+++|+.|+++++.-...          ..+ .+++|+.|+++++...  .+.. .+..++
T Consensus       484 ~L~Ls~N~l~~i~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~  560 (680)
T 1ziw_A          484 ILDLSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPVEVFKDLF  560 (680)
T ss_dssp             EEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCTTTTTTCT
T ss_pred             EEECCCCCCCcCChhh-hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCCHHHccccc
Confidence            9999988888776421 24567888888887642111          013 5788999998887643  3322 356788


Q ss_pred             CccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccc---cccccceeEeccCCcc
Q 046380          332 NIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEI---YSLTLKTLVVHGCDHL  392 (434)
Q Consensus       332 ~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l  392 (434)
                      +|++|+++++ .++.- ....+..+++|+.|++++|.+..-....   ...+|+.|++++++..
T Consensus       561 ~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          561 ELKIIDLGLN-NLNTL-PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             TCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CcceeECCCC-CCCcC-CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence            8999999877 33311 1223357788999999998773311111   3467888888876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.04  E-value=3.6e-10  Score=104.58  Aligned_cols=182  Identities=14%  Similarity=0.101  Sum_probs=94.4

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..+.  .+ |++|+|+++.+..        +++ .+..+++|++|++++      ..+ .-....+..+++|++|
T Consensus        28 l~~ip~~~~--~~-l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~------n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           28 LTAIPSNIP--AD-TKKLDLQSNKLSS--------LPSKAFHRLTKLRLLYLND------NKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             CSSCCSCCC--TT-CSEEECCSSCCSC--------CCTTSSSSCTTCCEEECCS------SCCSCCCTTTTSSCTTCCEE
T ss_pred             CCccCCCCC--CC-CCEEECcCCCCCe--------eCHHHhcCCCCCCEEECCC------CccCeeChhhhcCCCCCCEE
Confidence            344555443  23 8888888887722        122 456788888888887      444 2223345668888888


Q ss_pred             eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380          209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK  288 (434)
Q Consensus       209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~  288 (434)
                      .++++......        ......+++|++|++++....... ...+..+++|+.|++++|.+..+|... ...+++|+
T Consensus        91 ~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~  160 (270)
T 2o6q_A           91 WVTDNKLQALP--------IGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGV-FDKLTSLK  160 (270)
T ss_dssp             ECCSSCCCCCC--------TTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCC
T ss_pred             ECCCCcCCcCC--------HhHcccccCCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCcCCccCHhH-ccCCcccc
Confidence            88887663221        011224566666666654433211 112455667777777766666655321 12345666


Q ss_pred             EEEeecCCCCcc--eee-cCCcccEEEeccccCcccceee-cCCCCCCccEEEEcCc
Q 046380          289 LVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFHF-GGRGFGNIKTLAVNGF  341 (434)
Q Consensus       289 ~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~~-~~~~~~~Lk~L~l~~~  341 (434)
                      +|+++++.-...  ..+ .+++|+.|+++++...  .+.. .+..+++|+.|.++++
T Consensus       161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK--RVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSS
T ss_pred             eeEecCCcCcEeChhHhccCCCcCEEECCCCcCC--cCCHHHhccccCCCEEEecCC
Confidence            666655421111  112 3455555555554322  1111 1233455555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.02  E-value=2.2e-10  Score=106.17  Aligned_cols=102  Identities=13%  Similarity=0.075  Sum_probs=51.8

Q ss_pred             hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCccccee-ecCCCCC
Q 046380          256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFH-FGGRGFG  331 (434)
Q Consensus       256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~  331 (434)
                      +..+++|+.|++++|.++.+|... ...+++|++|+++++.--...  .+ .+++|+.|+++++...  +.. ..+..++
T Consensus       129 ~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~  205 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQLQSLPKGV-FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK--SVPDGVFDRLT  205 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCT
T ss_pred             hccCCCCCEEECCCCccCccCHHH-hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC--ccCHHHHhCCc
Confidence            345566666666666665554311 123456666666655321111  12 3566666666665432  111 1234566


Q ss_pred             CccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          332 NIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       332 ~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      +|++|.++++. ..        ..||+|+.|++..+..
T Consensus       206 ~L~~L~l~~N~-~~--------~~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          206 SLQYIWLHDNP-WD--------CTCPGIRYLSEWINKH  234 (272)
T ss_dssp             TCCEEECCSSC-BC--------CCTTTTHHHHHHHHHT
T ss_pred             CCCEEEccCCC-cc--------ccCcHHHHHHHHHHhC
Confidence            77777776662 11        2356666666655554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.00  E-value=9.2e-10  Score=103.09  Aligned_cols=39  Identities=15%  Similarity=0.116  Sum_probs=20.2

Q ss_pred             CCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          327 GRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       327 ~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ...+++|++|.++++ .+++-  .. +..+++|+.|+++++++
T Consensus       174 l~~l~~L~~L~L~~N-~i~~l--~~-l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             GTTCTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEEEEEEEE
T ss_pred             hcCCCccCEEECCCC-cCCCC--hh-hccCCCCCEEECcCCcc
Confidence            344555666666555 22221  11 34566666666666655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.00  E-value=3.3e-10  Score=106.13  Aligned_cols=193  Identities=16%  Similarity=0.101  Sum_probs=108.6

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      ++++++++....        ...+|..++  .. ++.|+|+++.+...       .+..+..+++|++|+|++      .
T Consensus        10 ~~l~~l~~~~~~--------l~~ip~~~~--~~-l~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~------n   65 (290)
T 1p9a_G           10 ASHLEVNCDKRN--------LTALPPDLP--KD-TTILHLSENLLYTF-------SLATLMPYTRLTQLNLDR------A   65 (290)
T ss_dssp             TTCCEEECTTSC--------CSSCCSCCC--TT-CCEEECTTSCCSEE-------EGGGGTTCTTCCEEECTT------S
T ss_pred             CCccEEECCCCC--------CCcCCCCCC--CC-CCEEEcCCCcCCcc-------CHHHhhcCCCCCEEECCC------C
Confidence            345555554332        455665554  23 88888888876220       013456788888888887      4


Q ss_pred             eeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecc
Q 046380          191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSS  270 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (434)
                      .+..+.. ...+++|+.|+++++....         +......+++|+.|++++....... ...+..+++|+.|++++|
T Consensus        66 ~l~~~~~-~~~l~~L~~L~Ls~N~l~~---------l~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G           66 ELTKLQV-DGTLPVLGTLDLSHNQLQS---------LPLLGQTLPALTVLDVSFNRLTSLP-LGALRGLGELQELYLKGN  134 (290)
T ss_dssp             CCCEEEC-CSCCTTCCEEECCSSCCSS---------CCCCTTTCTTCCEEECCSSCCCCCC-SSTTTTCTTCCEEECTTS
T ss_pred             ccCcccC-CCCCCcCCEEECCCCcCCc---------CchhhccCCCCCEEECCCCcCcccC-HHHHcCCCCCCEEECCCC
Confidence            4411111 1567888888888876632         2223345677777777665443211 113456777777777777


Q ss_pred             ccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380          271 VFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF  341 (434)
Q Consensus       271 ~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~  341 (434)
                      .+..+|... ...+++|+.|+++++.--...  .+ .+++|+.|.++++...  .+........+|+.|.+.++
T Consensus       135 ~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          135 ELKTLPPGL-LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CCCCCCTTT-TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSC
T ss_pred             CCCccChhh-cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCC
Confidence            777665421 234567777777665321111  12 3667777777665533  33333344556777777655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.98  E-value=1.9e-10  Score=108.77  Aligned_cols=203  Identities=14%  Similarity=0.063  Sum_probs=109.6

Q ss_pred             CCceeEEEEeeeee-ccccccccccccccc--ccCcccceEEEeeecccceEee-C---hHH-HHHhcCCCcceeeeccc
Q 046380          142 GSFLVSLTIRHCKI-GAYQKNTVMGLTLSN--FFNPSVRRLVVRGCMALQGFEM-D---APR-LNYFQCSGIRDFDEAFV  213 (434)
Q Consensus       142 ~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~--~~~~~L~~L~L~~c~~~~~~~~-~---~l~-~~~~~cp~L~~L~l~~~  213 (434)
                      .+ |++|++++|.+ +.        .+...  ..+++|++|+|++      +.+ +   .+. ..+..+++|++|++++|
T Consensus        91 ~~-L~~L~l~~n~l~~~--------~~~~~~~~~~~~L~~L~Ls~------n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n  155 (310)
T 4glp_A           91 SR-LKELTLEDLKITGT--------MPPLPLEATGLALSSLRLRN------VSWATGRSWLAELQQWLKPGLKVLSIAQA  155 (310)
T ss_dssp             SC-CCEEEEESCCCBSC--------CCCCSSSCCCBCCSSCEEES------CCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred             Cc-eeEEEeeCCEeccc--------hhhhhhhccCCCCCEEEeec------ccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence            44 88888888876 22        12233  6788888888887      544 2   122 22346888888888877


Q ss_pred             cCCCCcccccccccceeeccCCceeEEEEEeEEeCch-hHH--HHhccCCCCcEEEeeccccccCCCCcchhhccCccEE
Q 046380          214 YRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDR-TFE--SALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLV  290 (434)
Q Consensus       214 ~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~--~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L  290 (434)
                      ......        ......+++|++|+++++..... ...  ..+..+++|++|++++|.++.+|..            
T Consensus       156 ~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~------------  215 (310)
T 4glp_A          156 HSPAFS--------CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV------------  215 (310)
T ss_dssp             SSCCCC--------TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH------------
T ss_pred             Ccchhh--------HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH------------
Confidence            663221        01112344555555544332211 010  0113344444444444433322210            


Q ss_pred             EeecCCCCcceee-cCCcccEEEeccccCccc--ceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecc
Q 046380          291 RMENCRFDGPVEI-HSPNLETFVYKAGHGEIA--SFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSC  367 (434)
Q Consensus       291 ~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~--~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~  367 (434)
                              ....+ .+++|++|+++++.....  ........+++|++|+++++ .++  .++.-  -+++|+.|++++|
T Consensus       216 --------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~--~lp~~--~~~~L~~L~Ls~N  282 (310)
T 4glp_A          216 --------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLE--QVPKG--LPAKLRVLDLSSN  282 (310)
T ss_dssp             --------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCC--SCCSC--CCSCCSCEECCSC
T ss_pred             --------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCC--chhhh--hcCCCCEEECCCC
Confidence                    00011 457777788777654311  11112223479999999988 444  11111  2489999999999


Q ss_pred             ccccccccccccccceeEeccCCcc
Q 046380          368 AIPKGHLEIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       368 ~~~~~~~~~~~~~L~~L~l~~c~~l  392 (434)
                      .+..-......++|+.|++++++..
T Consensus       283 ~l~~~~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          283 RLNRAPQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred             cCCCCchhhhCCCccEEECcCCCCC
Confidence            9843223334578999999988643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.98  E-value=7.4e-10  Score=103.73  Aligned_cols=171  Identities=18%  Similarity=0.123  Sum_probs=103.2

Q ss_pred             cccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCc
Q 046380          170 NFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLND  249 (434)
Q Consensus       170 ~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~  249 (434)
                      ...+++|++|++++      ..+..+.. +..+++|++|.+++|...+.                               
T Consensus        42 ~~~l~~L~~L~l~~------~~i~~~~~-~~~l~~L~~L~L~~n~l~~~-------------------------------   83 (291)
T 1h6t_A           42 QNELNSIDQIIANN------SDIKSVQG-IQYLPNVTKLFLNGNKLTDI-------------------------------   83 (291)
T ss_dssp             HHHHHTCCEEECTT------SCCCCCTT-GGGCTTCCEEECCSSCCCCC-------------------------------
T ss_pred             hhhcCcccEEEccC------CCcccChh-HhcCCCCCEEEccCCccCCC-------------------------------
Confidence            34677777777776      33311111 45577777777777655221                               


Q ss_pred             hhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCC
Q 046380          250 RTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGR  328 (434)
Q Consensus       250 ~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~  328 (434)
                       .   .+..+++|+.|++++|.+..+|.   ...+++|++|+++++.--....+ .+++|+.|+++++...  .+ ....
T Consensus        84 -~---~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~--~~-~~l~  153 (291)
T 1h6t_A           84 -K---PLANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT--DI-TVLS  153 (291)
T ss_dssp             -G---GGTTCTTCCEEECCSSCCCCGGG---GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC--CC-GGGG
T ss_pred             -c---ccccCCCCCEEECCCCcCCCChh---hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCC--cc-hhhc
Confidence             0   13455566666666655555442   23455666666665532222223 5777888887776533  22 2456


Q ss_pred             CCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCcc
Q 046380          329 GFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       329 ~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l  392 (434)
                      .+++|++|.++++ .++...  . +..+++|+.|++++|.+..-.......+|+.|++++++..
T Consensus       154 ~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          154 RLTKLDTLSLEDN-QISDIV--P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             GCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred             cCCCCCEEEccCC-ccccch--h-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence            7889999999988 443321  1 5689999999999998733211123468999999988644

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.96  E-value=2.2e-10  Score=106.20  Aligned_cols=185  Identities=13%  Similarity=0.103  Sum_probs=123.0

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|.+..+.        ...++ .+..+.+ |++|++++|.+ +.          +....+++|++|++++      
T Consensus        41 ~~L~~L~l~~~~--------i~~~~-~l~~l~~-L~~L~l~~n~l~~~----------~~l~~l~~L~~L~L~~------   94 (272)
T 3rfs_A           41 NSIDQIIANNSD--------IKSVQ-GIQYLPN-VRYLALGGNKLHDI----------SALKELTNLTYLILTG------   94 (272)
T ss_dssp             TTCCEEECTTSC--------CCCCT-TGGGCTT-CCEEECTTSCCCCC----------GGGTTCTTCCEEECTT------
T ss_pred             cceeeeeeCCCC--------ccccc-ccccCCC-CcEEECCCCCCCCc----------hhhcCCCCCCEEECCC------
Confidence            688888876554        22222 2344455 99999999887 33          5567889999999988      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                      +.+ +.....+..+++|++|++++|......        ......+++|++|+++++...... ...+..+++|+.|+++
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLP--------DGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLS  165 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECC
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCccC--------HHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECC
Confidence            444 333344677899999999988763221        111245788999998876554322 1235778999999999


Q ss_pred             ccccccCCCCcchhhccCccEEEeecCCCCccee--e-cCCcccEEEeccccCcccceeecCCCCCCccEEEEc
Q 046380          269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVE--I-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVN  339 (434)
Q Consensus       269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~--~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~  339 (434)
                      +|.+..+|... ...+++|++|+++++.--....  + .+++|+.|++.++...        ..+++|+.|.+.
T Consensus       166 ~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~  230 (272)
T 3rfs_A          166 YNQLQSLPEGV-FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEW  230 (272)
T ss_dssp             SSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHH
T ss_pred             CCCcCccCHHH-hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHH
Confidence            99888776421 2457899999998875332222  3 5899999999886532        235556555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.95  E-value=4.9e-10  Score=104.92  Aligned_cols=191  Identities=13%  Similarity=0.092  Sum_probs=120.7

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF  223 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~  223 (434)
                      ++.+++.++.+..        +|+.  -.++|++|+|++      ..+ ......+..+++|++|.++++....      
T Consensus        12 l~~l~~~~~~l~~--------ip~~--~~~~l~~L~L~~------N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------   69 (290)
T 1p9a_G           12 HLEVNCDKRNLTA--------LPPD--LPKDTTILHLSE------NLLYTFSLATLMPYTRLTQLNLDRAELTK------   69 (290)
T ss_dssp             CCEEECTTSCCSS--------CCSC--CCTTCCEEECTT------SCCSEEEGGGGTTCTTCCEEECTTSCCCE------
T ss_pred             ccEEECCCCCCCc--------CCCC--CCCCCCEEEcCC------CcCCccCHHHhhcCCCCCEEECCCCccCc------
Confidence            8999998887732        2222  237899999998      555 2233456789999999999987632      


Q ss_pred             ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--e
Q 046380          224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--V  301 (434)
Q Consensus       224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~  301 (434)
                         .... ..+++|+.|++++......  ...+..+++|+.|++++|.++.+|... ...+++|++|.++++.--..  -
T Consensus        70 ---~~~~-~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N~l~~~~~~  142 (290)
T 1p9a_G           70 ---LQVD-GTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNELKTLPPG  142 (290)
T ss_dssp             ---EECC-SCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSCCCCCCTT
T ss_pred             ---ccCC-CCCCcCCEEECCCCcCCcC--chhhccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCCCCCccChh
Confidence               1111 4678888888877654421  123467788888888888887776421 24467788888877632211  1


Q ss_pred             ee-cCCcccEEEeccccCcccceee-cCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          302 EI-HSPNLETFVYKAGHGEIASFHF-GGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       302 ~~-~~p~L~~L~l~~~~~~~~~~~~-~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      .+ .+++|+.|+++++...  ++.. .+..+++|++|.++++ .+.  .+..-+...++|+.|++++++.
T Consensus       143 ~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L~~L~L~~N-~l~--~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          143 LLTPTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQEN-SLY--TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCS--CCCTTTTTTCTTCCEEECCSS-CCC--CCCTTTTTTCCCSEEECCSCCB
T ss_pred             hcccccCCCEEECCCCcCC--ccCHHHhcCcCCCCEEECCCC-cCC--ccChhhcccccCCeEEeCCCCc
Confidence            12 4677888888776533  2222 2345677888887776 332  1211223456777777777665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.95  E-value=9.3e-10  Score=113.41  Aligned_cols=54  Identities=9%  Similarity=0.046  Sum_probs=30.9

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccC
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      |+.|++++|.+ ..          +....+++|++|+|++      +.+..+.. +..+++|+.|.|++|..
T Consensus        45 L~~L~l~~n~i~~l----------~~l~~l~~L~~L~Ls~------N~l~~~~~-l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           45 IDQIIANNSDIKSV----------QGIQYLPNVTKLFLNG------NKLTDIKP-LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             CCCCBCTTCCCCCC----------TTGGGCTTCCEEECTT------SCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             CCEEECcCCCCCCC----------hHHccCCCCCEEEeeC------CCCCCChh-hccCCCCCEEECcCCCC
Confidence            66666666655 32          3455666777777766      44411111 55667777777766655

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.95  E-value=2.7e-09  Score=93.75  Aligned_cols=38  Identities=11%  Similarity=0.173  Sum_probs=21.4

Q ss_pred             HhccCCCCcEEEeeccc-cccCCCCcchhhccCccEEEeecC
Q 046380          255 ALSKFSNLETLKLLSSV-FGKLPSSLSSAILKKLKLVRMENC  295 (434)
Q Consensus       255 ~~~~~~~L~~L~l~~~~-~~~~p~~~~~~~~~~L~~L~l~~c  295 (434)
                      .+..+++|+.|++++|. ++.+|.   ...+++|++|++++|
T Consensus       131 ~l~~l~~L~~L~L~~n~~i~~~~~---l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          131 KINTLPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFD  169 (197)
T ss_dssp             HHTTCSSCCEEECCSCTBCCCCGG---GGGCSSCCEEECTTB
T ss_pred             HHhhCCCCCEEEccCCCCccccHh---hcCCCCCCEEECCCC
Confidence            44566777777777665 555542   233445555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.92  E-value=1.4e-09  Score=112.04  Aligned_cols=173  Identities=12%  Similarity=0.089  Sum_probs=128.4

Q ss_pred             ccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeC
Q 046380          169 SNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLN  248 (434)
Q Consensus       169 ~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~  248 (434)
                      ....+++|+.|++++      ..+..+. -+..+++|+.|.|++|.....         .. ...+++|+.|.++++...
T Consensus        38 ~~~~L~~L~~L~l~~------n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~---------~~-l~~l~~L~~L~Ls~N~l~  100 (605)
T 1m9s_A           38 TQNELNSIDQIIANN------SDIKSVQ-GIQYLPNVTKLFLNGNKLTDI---------KP-LTNLKNLGWLFLDENKIK  100 (605)
T ss_dssp             CHHHHTTCCCCBCTT------CCCCCCT-TGGGCTTCCEEECTTSCCCCC---------GG-GGGCTTCCEEECCSSCCC
T ss_pred             chhcCCCCCEEECcC------CCCCCCh-HHccCCCCCEEEeeCCCCCCC---------hh-hccCCCCCEEECcCCCCC
Confidence            456889999999998      5552222 267799999999999987432         22 457899999999887665


Q ss_pred             chhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecC
Q 046380          249 DRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGG  327 (434)
Q Consensus       249 ~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~  327 (434)
                      +..   .+..+++|+.|++++|.+..+|.   ...+++|+.|++++|.--....+ .+++|+.|+++++...  +... +
T Consensus       101 ~l~---~l~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~--~~~~-l  171 (605)
T 1m9s_A          101 DLS---SLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--DIVP-L  171 (605)
T ss_dssp             CCT---TSTTCTTCCEEECTTSCCCCCGG---GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCC--CCGG-G
T ss_pred             CCh---hhccCCCCCEEEecCCCCCCCcc---ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCC--Cchh-h
Confidence            532   46789999999999998887753   45688999999998754333334 6899999999987643  2222 6


Q ss_pred             CCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccc
Q 046380          328 RGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPK  371 (434)
Q Consensus       328 ~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~  371 (434)
                      ..+++|+.|.|+++ .++.-  . -+..+++|+.|+|++|.+..
T Consensus       172 ~~l~~L~~L~Ls~N-~i~~l--~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          172 AGLTKLQNLYLSKN-HISDL--R-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCTTCCEEECCSS-CCCBC--G-GGTTCTTCSEEECCSEEEEC
T ss_pred             ccCCCCCEEECcCC-CCCCC--h-HHccCCCCCEEEccCCcCcC
Confidence            77899999999988 44432  2 24688999999999998743

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.91  E-value=1.7e-09  Score=100.00  Aligned_cols=176  Identities=16%  Similarity=0.170  Sum_probs=122.0

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|+++.+.        ...+|...|....+|++|+|+++.+..        +++. +..+++|++|++++      
T Consensus        37 ~~l~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~--------i~~~~~~~l~~L~~L~l~~------   94 (270)
T 2o6q_A           37 ADTKKLDLQSNK--------LSSLPSKAFHRLTKLRLLYLNDNKLQT--------LPAGIFKELKNLETLWVTD------   94 (270)
T ss_dssp             TTCSEEECCSSC--------CSCCCTTSSSSCTTCCEEECCSSCCSC--------CCTTTTSSCTTCCEEECCS------
T ss_pred             CCCCEEECcCCC--------CCeeCHHHhcCCCCCCEEECCCCccCe--------eChhhhcCCCCCCEEECCC------
Confidence            578889887665        455665545443339999999998732        2233 35799999999998      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                      ..+ ......+..+++|++|.++++......        ......+++|++|+++++...... ...+..+++|+.|+++
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLP--------PRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLY  165 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeC--------HHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEec
Confidence            555 323345677999999999998764321        112246789999999876554322 1235788999999999


Q ss_pred             ccccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccC
Q 046380          269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHG  318 (434)
Q Consensus       269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~  318 (434)
                      +|.+..+|... ...+++|++|+++++.--...  .+ .+++|+.|++.++..
T Consensus       166 ~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          166 NNQLKRVPEGA-FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             SSCCSCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCcCcEeChhH-hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            99988876421 245789999999987422211  23 589999999988653

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.87  E-value=1.3e-09  Score=73.92  Aligned_cols=39  Identities=28%  Similarity=0.336  Sum_probs=33.2

Q ss_pred             CCCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhcc
Q 046380            3 AIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHW   41 (434)
Q Consensus         3 ~~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw   41 (434)
                      ..+.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            356789999999999999999999999999999999753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.80  E-value=1.6e-08  Score=104.58  Aligned_cols=156  Identities=15%  Similarity=0.072  Sum_probs=101.0

Q ss_pred             eccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce---ee-cCC
Q 046380          231 ENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV---EI-HSP  306 (434)
Q Consensus       231 ~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~---~~-~~p  306 (434)
                      ...+++|+.+.+.............+..+++++.++++.+.+...+.. ....+++|+.|+++++.....+   .+ .++
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccccccccchhhhhcccccccccccccccccccccccccccccccccc-ccccchhhhhhhhhhcccccccCchhhhhcc
Confidence            345677888777644332222222456788889999988877665331 2345678999999887543322   23 588


Q ss_pred             cccEEEeccccCccccee-ecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccc---cccccccccc
Q 046380          307 NLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKG---HLEIYSLTLK  382 (434)
Q Consensus       307 ~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~---~~~~~~~~L~  382 (434)
                      +|+.|+++++...  ++. ..+..+++|++|+++++ .++.-. ...+..+++|+.|+|++|++..-   .+.....+|+
T Consensus       495 ~L~~L~Ls~N~L~--~l~~~~f~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~  570 (635)
T 4g8a_A          495 NLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHN-NFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  570 (635)
T ss_dssp             TCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTS-CCCBCC-CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred             ccCEEECCCCccC--CcChHHHcCCCCCCEEECCCC-cCCCCC-hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence            9999999987643  322 23567899999999987 332210 11236789999999999987432   2222235799


Q ss_pred             eeEeccCCc
Q 046380          383 TLVVHGCDH  391 (434)
Q Consensus       383 ~L~l~~c~~  391 (434)
                      .|++++++.
T Consensus       571 ~L~L~~Np~  579 (635)
T 4g8a_A          571 FLNLTQNDF  579 (635)
T ss_dssp             EEECTTCCB
T ss_pred             EEEeeCCCC
Confidence            999987543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.80  E-value=1.4e-08  Score=103.54  Aligned_cols=182  Identities=13%  Similarity=0.050  Sum_probs=111.3

Q ss_pred             hcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccc
Q 046380          109 LRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       109 ~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      ...+++.|+++.+.        ...+|..++  .+ |++|+|++|.+..        + |  ..+++|++|+|++     
T Consensus        57 ~~~~L~~L~Ls~n~--------L~~lp~~l~--~~-L~~L~Ls~N~l~~--------i-p--~~l~~L~~L~Ls~-----  109 (571)
T 3cvr_A           57 LINQFSELQLNRLN--------LSSLPDNLP--PQ-ITVLEITQNALIS--------L-P--ELPASLEYLDACD-----  109 (571)
T ss_dssp             HHTTCSEEECCSSC--------CSCCCSCCC--TT-CSEEECCSSCCSC--------C-C--CCCTTCCEEECCS-----
T ss_pred             ccCCccEEEeCCCC--------CCccCHhHc--CC-CCEEECcCCCCcc--------c-c--cccCCCCEEEccC-----
Confidence            34689999987665        445777664  34 9999999988732        2 3  5678999999998     


Q ss_pred             eEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          189 GFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       189 ~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                       +.+..+.. +.  .+|+.|.+++|....         ++.   .+++|+.|+++++....     +...+++|+.|+++
T Consensus       110 -N~l~~ip~-l~--~~L~~L~Ls~N~l~~---------lp~---~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls  168 (571)
T 3cvr_A          110 -NRLSTLPE-LP--ASLKHLDVDNNQLTM---------LPE---LPALLEYINADNNQLTM-----LPELPTSLEVLSVR  168 (571)
T ss_dssp             -SCCSCCCC-CC--TTCCEEECCSSCCSC---------CCC---CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECC
T ss_pred             -CCCCCcch-hh--cCCCEEECCCCcCCC---------CCC---cCccccEEeCCCCccCc-----CCCcCCCcCEEECC
Confidence             44412222 22  289999999887632         222   56778888877665443     11256788888888


Q ss_pred             ccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcc-------cEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380          269 SSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNL-------ETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF  341 (434)
Q Consensus       269 ~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L-------~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~  341 (434)
                      +|.++.+|. +    .++|+.|+++++.--....+ .++|       +.|+++++..+  .+......+++|++|+++++
T Consensus       169 ~N~L~~lp~-l----~~~L~~L~Ls~N~L~~lp~~-~~~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          169 NNQLTFLPE-L----PESLEALDVSTNLLESLPAV-PVRNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             SSCCSCCCC-C----CTTCCEEECCSSCCSSCCCC-C--------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSS
T ss_pred             CCCCCCcch-h----hCCCCEEECcCCCCCchhhH-HHhhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCC
Confidence            887777775 2    16777777776532111111 1145       66776665533  23333334667777777666


Q ss_pred             cCCcHH
Q 046380          342 LGLRNK  347 (434)
Q Consensus       342 ~~~~~~  347 (434)
                       .++..
T Consensus       241 -~l~~~  245 (571)
T 3cvr_A          241 -PLSSR  245 (571)
T ss_dssp             -SCCHH
T ss_pred             -cCCCc
Confidence             44443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.76  E-value=7.9e-09  Score=88.17  Aligned_cols=135  Identities=10%  Similarity=0.020  Sum_probs=78.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCcc--ccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHY--ALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~--~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      +++++|++..+.        ..  .+|..+....+ |++|++++|.+..        + .....+++|++|++++     
T Consensus        24 ~~L~~L~l~~n~--------l~~~~i~~~~~~l~~-L~~L~l~~n~l~~--------~-~~~~~l~~L~~L~Ls~-----   80 (168)
T 2ell_A           24 AAVRELVLDNCK--------SNDGKIEGLTAEFVN-LEFLSLINVGLIS--------V-SNLPKLPKLKKLELSE-----   80 (168)
T ss_dssp             TSCSEEECCSCB--------CBTTBCSSCCGGGGG-CCEEEEESSCCCC--------C-SSCCCCSSCCEEEEES-----
T ss_pred             ccCCEEECCCCC--------CChhhHHHHHHhCCC-CCEEeCcCCCCCC--------h-hhhccCCCCCEEECcC-----
Confidence            568888887665        22  56655444555 8888888887732        1 4566788888888888     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhH--HHHhccCCCCcEE
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF--ESALSKFSNLETL  265 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L  265 (434)
                       +.+ +.+...+..+++|+.|++++|...+...       ......+++|+.|+++++.......  ...+..+++|+.|
T Consensus        81 -N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           81 -NRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST-------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             -CCCCSCCCHHHHHCTTCCEEECBSSSCCSSGG-------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred             -CcCchHHHHHHhhCCCCCEEeccCCccCcchh-------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence             555 3356666778888888888887633210       0112234555555555443332111  1234455555555


Q ss_pred             EeeccccccCC
Q 046380          266 KLLSSVFGKLP  276 (434)
Q Consensus       266 ~l~~~~~~~~p  276 (434)
                      ++++|....+|
T Consensus       153 ~l~~n~~~~~~  163 (168)
T 2ell_A          153 DGYDREDQEAP  163 (168)
T ss_dssp             TTEETTSCBCC
T ss_pred             cCCCCChhhcc
Confidence            55555444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.74  E-value=1.1e-08  Score=98.19  Aligned_cols=65  Identities=5%  Similarity=0.004  Sum_probs=37.9

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChH-HHHHhcCCCcce
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAP-RLNYFQCSGIRD  207 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l-~~~~~~cp~L~~  207 (434)
                      ...+|..++  .+ +++|+|+++.+..        +++ .+.++++|++|+|++      ..+ +.+ ...+.++++|++
T Consensus        21 Lt~iP~~l~--~~-l~~L~Ls~N~i~~--------i~~~~f~~l~~L~~L~Ls~------N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X           21 VTEIPSDLP--RN-AIELRFVLTKLRV--------IQKGAFSGFGDLEKIEISQ------NDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             CCSCCTTCC--TT-CSEEEEESCCCSE--------ECTTSSTTCTTCCEEEEEC------CTTCCEECTTSBCSCTTCCE
T ss_pred             CCccCcCcC--CC-CCEEEccCCcCCC--------cCHHHHcCCCCCCEEECcC------CCCCCccChhHhhcchhhhh
Confidence            456666553  23 8888888887732        233 346788888888887      332 211 123455666665


Q ss_pred             eeecc
Q 046380          208 FDEAF  212 (434)
Q Consensus       208 L~l~~  212 (434)
                      +....
T Consensus        84 ~l~~~   88 (350)
T 4ay9_X           84 IRIEK   88 (350)
T ss_dssp             EEEEE
T ss_pred             hhccc
Confidence            44433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.73  E-value=7.3e-09  Score=94.61  Aligned_cols=159  Identities=15%  Similarity=0.113  Sum_probs=92.4

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..+.  .. |++|+|+++.+..        ++ ..+..+++|++|+|++      ..+ +.....+..+++|++|
T Consensus        26 l~~~p~~~~--~~-l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           26 LDSVPSGIP--AD-TEKLDLQSTGLAT--------LSDATFRGLTKLTWLNLDY------NQLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             CSSCCSCCC--TT-CCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTT------SCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCCCCC--CC-CCEEEccCCCcCc--------cCHhHhcCcccCCEEECCC------CcCCccCHhHhccCCcCCEE
Confidence            445555443  23 7888888877622        11 2455778888888877      444 2223345667788888


Q ss_pred             eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380          209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK  288 (434)
Q Consensus       209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~  288 (434)
                      ++++|......                                 ...+..+++|+.|++++|.+..+|... ...+++|+
T Consensus        89 ~L~~n~l~~~~---------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~  134 (251)
T 3m19_A           89 GLANNQLASLP---------------------------------LGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLK  134 (251)
T ss_dssp             ECTTSCCCCCC---------------------------------TTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCC
T ss_pred             ECCCCcccccC---------------------------------hhHhcccCCCCEEEcCCCcCCCcChhH-hccCCccc
Confidence            88777653210                                 012345566666666666666554321 13355666


Q ss_pred             EEEeecCCCCcce--ee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCcc
Q 046380          289 LVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFL  342 (434)
Q Consensus       289 ~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~  342 (434)
                      +|+++++.--...  .+ .+++|+.|+++++...  ++. ..+..+++|++|.++++.
T Consensus       135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ--SVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSCC
T ss_pred             EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC--ccCHHHHhCCCCCCEEEeeCCc
Confidence            6666665321111  23 4678888888776543  222 234567889999998873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.72  E-value=1.1e-08  Score=93.47  Aligned_cols=171  Identities=10%  Similarity=0.089  Sum_probs=117.6

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF  223 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~  223 (434)
                      .++++++++.+..        +|...  .++|++|+|++      ..+ +.....+.++++|++|++++|......    
T Consensus        16 ~~~l~~~~~~l~~--------~p~~~--~~~l~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----   75 (251)
T 3m19_A           16 KKEVDCQGKSLDS--------VPSGI--PADTEKLDLQS------TGLATLSDATFRGLTKLTWLNLDYNQLQTLS----   75 (251)
T ss_dssp             GTEEECTTCCCSS--------CCSCC--CTTCCEEECTT------SCCCCCCTTTTTTCTTCCEEECTTSCCCCCC----
T ss_pred             CeEEecCCCCccc--------cCCCC--CCCCCEEEccC------CCcCccCHhHhcCcccCCEEECCCCcCCccC----
Confidence            6778887776622        12222  26899999988      555 322334667889999999888662210    


Q ss_pred             ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce--
Q 046380          224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--  301 (434)
Q Consensus       224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--  301 (434)
                                                   ...+..+++|+.|++++|.+..+|... ...+++|++|+++++.--...  
T Consensus        76 -----------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~  125 (251)
T 3m19_A           76 -----------------------------AGVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLKSLPSG  125 (251)
T ss_dssp             -----------------------------TTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTT
T ss_pred             -----------------------------HhHhccCCcCCEEECCCCcccccChhH-hcccCCCCEEEcCCCcCCCcChh
Confidence                                         113567899999999999998876422 245789999999987422221  


Q ss_pred             ee-cCCcccEEEeccccCcccceee-cCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          302 EI-HSPNLETFVYKAGHGEIASFHF-GGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       302 ~~-~~p~L~~L~l~~~~~~~~~~~~-~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      .+ .+++|++|+++++...  ++.. .+..+++|++|+++++ .+... ....+..+++|+.|+++++++
T Consensus       126 ~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          126 VFDRLTKLKELRLNTNQLQ--SIPAGAFDKLTNLQTLSLSTN-QLQSV-PHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSCCB
T ss_pred             HhccCCcccEEECcCCcCC--ccCHHHcCcCcCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEEeeCCce
Confidence            23 5899999999997644  3322 3567899999999988 33321 112346789999999999987

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.72  E-value=1.9e-08  Score=92.64  Aligned_cols=139  Identities=11%  Similarity=0.111  Sum_probs=87.1

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF  223 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~  223 (434)
                      |++|++++|.+ ..          +....+++|++|++++      ..+..+.. +..+++|++|++++|.....     
T Consensus        43 L~~L~l~~n~i~~l----------~~l~~l~~L~~L~L~~------N~i~~~~~-l~~l~~L~~L~L~~N~l~~l-----  100 (263)
T 1xeu_A           43 VQNFNGDNSNIQSL----------AGMQFFTNLKELHLSH------NQISDLSP-LKDLTKLEELSVNRNRLKNL-----  100 (263)
T ss_dssp             CSEEECTTSCCCCC----------TTGGGCTTCCEEECCS------SCCCCCGG-GTTCSSCCEEECCSSCCSCC-----
T ss_pred             CcEEECcCCCcccc----------hHHhhCCCCCEEECCC------CccCCChh-hccCCCCCEEECCCCccCCc-----
Confidence            88888888877 33          4566788888888887      55511122 67788888888888876332     


Q ss_pred             ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee
Q 046380          224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI  303 (434)
Q Consensus       224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~  303 (434)
                          .....  ++|+.|+++++...+..   .+..+++|+.|++++|.++.+|.   ...+++|+.|+++++.--....+
T Consensus       101 ----~~~~~--~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~---l~~l~~L~~L~L~~N~i~~~~~l  168 (263)
T 1xeu_A          101 ----NGIPS--ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEITNTGGL  168 (263)
T ss_dssp             ----TTCCC--SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGG---GGGCTTCCEEECTTSCCCBCTTS
T ss_pred             ----Ccccc--CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCChH---HccCCCCCEEECCCCcCcchHHh
Confidence                11111  77777777766555431   36677888888888887776652   34466677777766532222222


Q ss_pred             -cCCcccEEEecccc
Q 046380          304 -HSPNLETFVYKAGH  317 (434)
Q Consensus       304 -~~p~L~~L~l~~~~  317 (434)
                       .+++|+.|+++++.
T Consensus       169 ~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTCCCCCEEEEEEEE
T ss_pred             ccCCCCCEEeCCCCc
Confidence             45666666665544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.70  E-value=7.9e-08  Score=84.28  Aligned_cols=127  Identities=10%  Similarity=0.064  Sum_probs=57.8

Q ss_pred             cCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCc--ceee-cCCccc
Q 046380          233 SMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDG--PVEI-HSPNLE  309 (434)
Q Consensus       233 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~--~~~~-~~p~L~  309 (434)
                      .+++|++|+++++...+..   .+..+++|+.|++++|.+..++.   ...+++|++|+++++.--.  ...+ .+++|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCCCSCCGG---GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCCCCcchh---hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            4556666666654443211   24556666666666664444331   2235555555555543211  1122 355555


Q ss_pred             EEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          310 TFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       310 ~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      +|+++++..... .......+++|++|.++++..+++-  . .+..+|+|+.|++++|.+
T Consensus       116 ~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          116 LLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             EEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCC
T ss_pred             EEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCC
Confidence            555555443210 0112234455555555555212221  1 133455555555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=3.5e-08  Score=94.98  Aligned_cols=168  Identities=13%  Similarity=0.069  Sum_probs=94.7

Q ss_pred             cccCcccceEEEeeecccc-eEe-eC--hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeE
Q 046380          170 NFFNPSVRRLVVRGCMALQ-GFE-MD--APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFM  245 (434)
Q Consensus       170 ~~~~~~L~~L~L~~c~~~~-~~~-~~--~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~  245 (434)
                      ...+++|+.|.+.....-. .+. .+  .+..++..+|+|++|.+.++....         ...  +..|+|++|.+..+
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~---------l~~--~~~~~L~~L~L~~~  203 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS---------IGK--KPRPNLKSLEIISG  203 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB---------CCS--CBCTTCSEEEEECS
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce---------ecc--ccCCCCcEEEEecC
Confidence            3456677777775410000 000 11  477888999999999999874311         111  34899999999877


Q ss_pred             EeCchhHHHHh-ccCCCCcEEEeecc--ccc------cCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccc
Q 046380          246 VLNDRTFESAL-SKFSNLETLKLLSS--VFG------KLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAG  316 (434)
Q Consensus       246 ~~~~~~~~~~~-~~~~~L~~L~l~~~--~~~------~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~  316 (434)
                      ...+.....+. ..+|+|+.|+|..+  ...      .+...+....|++|++|.+.+|                     
T Consensus       204 ~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~---------------------  262 (362)
T 2ra8_A          204 GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA---------------------  262 (362)
T ss_dssp             BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC---------------------
T ss_pred             CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC---------------------
Confidence            77666555443 47899999998632  111      1111111122444555544443                     


Q ss_pred             cCccc--ceeecCCCCCCccEEEEcCccCCcHHHHHHHH---hcCCccceEEeeccccc
Q 046380          317 HGEIA--SFHFGGRGFGNIKTLAVNGFLGLRNKSLEELI---SACILLENLYLNSCAIP  370 (434)
Q Consensus       317 ~~~~~--~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~---~~~p~Le~L~l~~~~~~  370 (434)
                      .....  ......+.+++|++|+++.+ .+++.+...+.   +++++|++|+|++|.+.
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            22111  11112234667777777665 56666555544   35677777777777663

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.68  E-value=2.4e-08  Score=91.95  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=69.1

Q ss_pred             hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCcc
Q 046380          256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIK  334 (434)
Q Consensus       256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk  334 (434)
                      +..+++|+.|++++|.+..+|...    .++|++|+++++.--....+ .+++|+.|+++++..+  .+ .....+++|+
T Consensus        81 l~~l~~L~~L~L~~N~l~~l~~~~----~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~--~~-~~l~~l~~L~  153 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKNLNGIP----SACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK--SI-VMLGFLSKLE  153 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSCCTTCC----CSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC--BC-GGGGGCTTCC
T ss_pred             hccCCCCCEEECCCCccCCcCccc----cCcccEEEccCCccCCChhhcCcccccEEECCCCcCC--CC-hHHccCCCCC
Confidence            566777778888777777765421    16788888777643222234 5788888888877643  22 1355678888


Q ss_pred             EEEEcCccCCcHHHHHHHHhcCCccceEEeeccccc
Q 046380          335 TLAVNGFLGLRNKSLEELISACILLENLYLNSCAIP  370 (434)
Q Consensus       335 ~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~  370 (434)
                      +|.++++ .++..   ..+..+++|+.|+++++.+.
T Consensus       154 ~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          154 VLDLHGN-EITNT---GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             EEECTTS-CCCBC---TTSTTCCCCCEEEEEEEEEE
T ss_pred             EEECCCC-cCcch---HHhccCCCCCEEeCCCCccc
Confidence            8888887 44333   33457888999999888763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.64  E-value=3.2e-08  Score=82.50  Aligned_cols=113  Identities=13%  Similarity=0.088  Sum_probs=60.4

Q ss_pred             ccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeec
Q 046380          133 ALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEA  211 (434)
Q Consensus       133 ~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~  211 (434)
                      .+|..+..+.+ |++|++++|.+..        + +....+++|++|++++      +.+ +.+...+..+++|++|+++
T Consensus        33 ~~~~~~~~l~~-L~~L~l~~n~l~~--------~-~~~~~l~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           33 KLEGLTDEFEE-LEFLSTINVGLTS--------I-ANLPKLNKLKKLELSD------NRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             BCCSCCTTCTT-CCEEECTTSCCCC--------C-TTCCCCTTCCEEECCS------SCCCSCTHHHHHHCTTCCEEECT
T ss_pred             HHHHHHhhcCC-CcEEECcCCCCCC--------c-hhhhcCCCCCEEECCC------CcccchHHHHhhhCCCCCEEECC
Confidence            34443333344 6666666655522        1 3344556666666665      333 2344445556666666666


Q ss_pred             cccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCC--cchhhccCccE
Q 046380          212 FVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSS--LSSAILKKLKL  289 (434)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~--~~~~~~~~L~~  289 (434)
                      +|..                                .+......+..+++|+.|++++|.+...|..  -....+++|++
T Consensus        97 ~N~i--------------------------------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           97 GNKI--------------------------------KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TSCC--------------------------------CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCcC--------------------------------CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            5544                                3222223567778888888888877766530  11344566666


Q ss_pred             EEee
Q 046380          290 VRME  293 (434)
Q Consensus       290 L~l~  293 (434)
                      |+++
T Consensus       145 L~l~  148 (149)
T 2je0_A          145 LDGY  148 (149)
T ss_dssp             ETTB
T ss_pred             ccCC
Confidence            6543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.63  E-value=3.4e-08  Score=100.84  Aligned_cols=175  Identities=13%  Similarity=0.027  Sum_probs=113.4

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL  224 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l  224 (434)
                      |++|+++++.+..        +|+..  +++|++|+|++      +.+..+.   ..+++|+.|++++|....       
T Consensus        61 L~~L~Ls~n~L~~--------lp~~l--~~~L~~L~Ls~------N~l~~ip---~~l~~L~~L~Ls~N~l~~-------  114 (571)
T 3cvr_A           61 FSELQLNRLNLSS--------LPDNL--PPQITVLEITQ------NALISLP---ELPASLEYLDACDNRLST-------  114 (571)
T ss_dssp             CSEEECCSSCCSC--------CCSCC--CTTCSEEECCS------SCCSCCC---CCCTTCCEEECCSSCCSC-------
T ss_pred             ccEEEeCCCCCCc--------cCHhH--cCCCCEEECcC------CCCcccc---cccCCCCEEEccCCCCCC-------
Confidence            9999999998732        23333  48999999998      5552222   568999999999997732       


Q ss_pred             cccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeec
Q 046380          225 EFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIH  304 (434)
Q Consensus       225 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~  304 (434)
                        ++.   ...+|++|+++++.....     ...+++|+.|++++|.++.+|.     .+++|++|+++++.--....+.
T Consensus       115 --ip~---l~~~L~~L~Ls~N~l~~l-----p~~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~l~  179 (571)
T 3cvr_A          115 --LPE---LPASLKHLDVDNNQLTML-----PELPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPELP  179 (571)
T ss_dssp             --CCC---CCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCCCC
T ss_pred             --cch---hhcCCCEEECCCCcCCCC-----CCcCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcchhh
Confidence              222   122888998887655441     1267889999999998888775     3678888888876422211123


Q ss_pred             CCcccEEEeccccCcccceeecCCCCCCc-------cEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          305 SPNLETFVYKAGHGEIASFHFGGRGFGNI-------KTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       305 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~L-------k~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                       ++|+.|+++++..+  .+.. +..  +|       +.|+++++ .++  .++.-+..+++|+.|+|++|++
T Consensus       180 -~~L~~L~Ls~N~L~--~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~--~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          180 -ESLEALDVSTNLLE--SLPA-VPV--RNHHSEETEIFFRCREN-RIT--HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -TTCCEEECCSSCCS--SCCC-CC----------CCEEEECCSS-CCC--CCCGGGGGSCTTEEEECCSSSC
T ss_pred             -CCCCEEECcCCCCC--chhh-HHH--hhhcccccceEEecCCC-cce--ecCHHHhcCCCCCEEEeeCCcC
Confidence             78888888887643  2222 111  55       77777776 333  1222223477777777777776

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.63  E-value=2.7e-08  Score=95.59  Aligned_cols=218  Identities=10%  Similarity=-0.016  Sum_probs=139.5

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-ccccccccccccc-ccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~  188 (434)
                      +++++|+++...        ...+|...|....+|++|+|++|.+ +.        +++ .+.++++|+++....+..+.
T Consensus        30 ~~l~~L~Ls~N~--------i~~i~~~~f~~l~~L~~L~Ls~N~i~~~--------i~~~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           30 RNAIELRFVLTK--------LRVIQKGAFSGFGDLEKIEISQNDVLEV--------IEADVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             TTCSEEEEESCC--------CSEECTTSSTTCTTCCEEEEECCTTCCE--------ECTTSBCSCTTCCEEEEEEETTCC
T ss_pred             CCCCEEEccCCc--------CCCcCHHHHcCCCCCCEEECcCCCCCCc--------cChhHhhcchhhhhhhcccCCccc
Confidence            689999999776        6788888776555599999999976 32        122 34578888776665532222


Q ss_pred             eEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEE-eCchhHHHHhcc-CCCCcEEE
Q 046380          189 GFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMV-LNDRTFESALSK-FSNLETLK  266 (434)
Q Consensus       189 ~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~-~~~L~~L~  266 (434)
                      +    -....+..+++|+.|.+.+|......        ........++..+.+.+.. ....... .+.. ...++.|+
T Consensus        94 ~----l~~~~f~~l~~L~~L~l~~n~l~~~~--------~~~~~~~~~l~~l~l~~~~~i~~l~~~-~f~~~~~~l~~L~  160 (350)
T 4ay9_X           94 Y----INPEAFQNLPNLQYLLISNTGIKHLP--------DVHKIHSLQKVLLDIQDNINIHTIERN-SFVGLSFESVILW  160 (350)
T ss_dssp             E----ECTTSBCCCTTCCEEEEEEECCSSCC--------CCTTCCBSSCEEEEEESCTTCCEECTT-SSTTSBSSCEEEE
T ss_pred             c----cCchhhhhccccccccccccccccCC--------chhhcccchhhhhhhcccccccccccc-chhhcchhhhhhc
Confidence            1    12344678999999999999774321        1112345566677765422 1110101 1223 35688999


Q ss_pred             eeccccccCCCCcchhhccCccEEEeecCCCCcceee----cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCcc
Q 046380          267 LLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI----HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFL  342 (434)
Q Consensus       267 l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~  342 (434)
                      +++|.++.+|....  ...+|++|.+.++..++.+.-    .+++|+.|+++++..+  ++.  ...+.+|++|.+.++.
T Consensus       161 L~~N~i~~i~~~~f--~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~--~lp--~~~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          161 LNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--SLP--SYGLENLKKLRARSTY  234 (350)
T ss_dssp             CCSSCCCEECTTSS--TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC--CCC--SSSCTTCCEEECTTCT
T ss_pred             cccccccCCChhhc--cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC--ccC--hhhhccchHhhhccCC
Confidence            99999988875422  235788888888777666542    5789999999987643  322  2446788888876663


Q ss_pred             CCcHHHHHHHHhcCCccceEEeec
Q 046380          343 GLRNKSLEELISACILLENLYLNS  366 (434)
Q Consensus       343 ~~~~~~l~~l~~~~p~Le~L~l~~  366 (434)
                      ...  .++. +..+++|+.+++.+
T Consensus       235 ~l~--~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          235 NLK--KLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             TCC--CCCC-TTTCCSCCEEECSC
T ss_pred             CcC--cCCC-chhCcChhhCcCCC
Confidence            221  1222 35788889888865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.61  E-value=5.8e-08  Score=100.38  Aligned_cols=61  Identities=16%  Similarity=0.179  Sum_probs=28.0

Q ss_pred             CCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecC
Q 046380          234 MSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENC  295 (434)
Q Consensus       234 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c  295 (434)
                      +++|++|+++++...... ...+..+++|+.|++++|.+..++..-....+++|++|+++++
T Consensus       123 L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            455555555443322210 0123455666666666665544332122334555666665554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.61  E-value=1.5e-08  Score=86.41  Aligned_cols=130  Identities=14%  Similarity=0.054  Sum_probs=76.0

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL  224 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l  224 (434)
                      |++|++++|.+..      ..++.....+++|++|++++      +.+..+ ..+..+++|++|++++|.....      
T Consensus        26 L~~L~l~~n~l~~------~~i~~~~~~l~~L~~L~l~~------n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~------   86 (168)
T 2ell_A           26 VRELVLDNCKSND------GKIEGLTAEFVNLEFLSLIN------VGLISV-SNLPKLPKLKKLELSENRIFGG------   86 (168)
T ss_dssp             CSEEECCSCBCBT------TBCSSCCGGGGGCCEEEEES------SCCCCC-SSCCCCSSCCEEEEESCCCCSC------
T ss_pred             CCEEECCCCCCCh------hhHHHHHHhCCCCCEEeCcC------CCCCCh-hhhccCCCCCEEECcCCcCchH------
Confidence            9999999988741      02344557889999999998      444222 4466788888898888877321      


Q ss_pred             cccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCC--cchhhccCccEEEeecC
Q 046380          225 EFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSS--LSSAILKKLKLVRMENC  295 (434)
Q Consensus       225 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~--~~~~~~~~L~~L~l~~c  295 (434)
                        .......+++|++|+++++...+......+..+++|+.|++++|.+..+|..  .....+++|++|++.+|
T Consensus        87 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           87 --LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             --CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             --HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence              1222223666666666655544422212445566666666666666555430  01223445555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.46  E-value=9.9e-10  Score=112.42  Aligned_cols=184  Identities=11%  Similarity=0.106  Sum_probs=109.2

Q ss_pred             ccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCC-----cccccccccceeeccCCceeEEE-EEe
Q 046380          171 FFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDH-----FCCRFLEFKVANENSMSSLETLV-FSF  244 (434)
Q Consensus       171 ~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~-----~~~~~l~~~~~~~~~~p~L~~L~-l~~  244 (434)
                      ..+++|+.|+|++      ..+..++.-+.+|++|++|++.++.....     ..+......+.....+++|+.|+ ++.
T Consensus       346 ~~~~~L~~L~Ls~------n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~  419 (567)
T 1dce_A          346 ATDEQLFRCELSV------EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  419 (567)
T ss_dssp             STTTTSSSCCCCH------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred             ccCccceeccCCh------hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh
Confidence            4577888888877      33335566677788888888766541000     00000011111222344555554 221


Q ss_pred             EEeC--------chhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc-eee-cCCcccEEEec
Q 046380          245 MVLN--------DRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP-VEI-HSPNLETFVYK  314 (434)
Q Consensus       245 ~~~~--------~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~-~~~-~~p~L~~L~l~  314 (434)
                      ....        ...+..+  ....|+.|++++|.++.+|.   ...+++|+.|+++++.--.. ..+ .+++|+.|+++
T Consensus       420 n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~lp~---~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls  494 (567)
T 1dce_A          420 AYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS  494 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSSCCC---GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC
T ss_pred             cccchhhhhhhhccccccc--CccCceEEEecCCCCCCCcC---ccccccCcEeecCcccccccchhhhcCCCCCEEECC
Confidence            1000        0111111  12368899999998888874   56788899999988642211 123 68899999998


Q ss_pred             cccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          315 AGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ++..+  ++. .+..+++|++|+++++ .++....+.-+..+++|+.|++++|.+
T Consensus       495 ~N~l~--~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          495 DNALE--NVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             SSCCC--CCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCC--CCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            87644  333 5677889999999888 443321133346889999999999887

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.45  E-value=5.2e-08  Score=86.14  Aligned_cols=155  Identities=13%  Similarity=0.166  Sum_probs=88.9

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..+..  + |++|+++++.+..        +++ ....+++|++|++++      ..+ +.....+..+++|++|
T Consensus        19 l~~~p~~~~~--~-l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A           19 RTSVPTGIPA--Q-TTYLDLETNSLKS--------LPNGVFDELTSLTQLYLGG------NKLQSLPNGVFNKLTSLTYL   81 (208)
T ss_dssp             CSSCCSCCCT--T-CSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCS------SCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCCCCCCC--C-CcEEEcCCCccCc--------CChhhhcccccCcEEECCC------CccCccChhhcCCCCCcCEE
Confidence            3445554432  3 8899998887722        123 345788899999988      444 2223345678889999


Q ss_pred             eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380          209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK  288 (434)
Q Consensus       209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~  288 (434)
                      ++++|......        ......+++|++|++++....... ...+..+++|+.|++++|.+..+|... ...+++|+
T Consensus        82 ~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~  151 (208)
T 2o6s_A           82 NLSTNQLQSLP--------NGVFDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQ  151 (208)
T ss_dssp             ECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCC
T ss_pred             ECCCCcCCccC--------HhHhcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHH-hccCCCcc
Confidence            88888663210        111234566777777655433211 113456677777777777666655321 23455666


Q ss_pred             EEEeecCCCCcceeecCCcccEEEeccc
Q 046380          289 LVRMENCRFDGPVEIHSPNLETFVYKAG  316 (434)
Q Consensus       289 ~L~l~~c~~l~~~~~~~p~L~~L~l~~~  316 (434)
                      +|++++++..    -.+++|+.|.+..+
T Consensus       152 ~L~l~~N~~~----~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          152 YIWLHDNPWD----CTCPGIRYLSEWIN  175 (208)
T ss_dssp             EEECCSCCBC----CCTTTTHHHHHHHH
T ss_pred             EEEecCCCee----cCCCCHHHHHHHHH
Confidence            6666664211    13555666554443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.38  E-value=6.3e-08  Score=80.71  Aligned_cols=13  Identities=8%  Similarity=0.020  Sum_probs=6.6

Q ss_pred             CCcceeeeccccC
Q 046380          203 SGIRDFDEAFVYR  215 (434)
Q Consensus       203 p~L~~L~l~~~~~  215 (434)
                      ++|++|.+++|..
T Consensus        17 ~~l~~L~l~~n~l   29 (149)
T 2je0_A           17 SDVKELVLDNSRS   29 (149)
T ss_dssp             GGCSEEECTTCBC
T ss_pred             ccCeEEEccCCcC
Confidence            4455555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.37  E-value=3.1e-07  Score=82.56  Aligned_cols=135  Identities=12%  Similarity=0.070  Sum_probs=76.1

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..+.  .+ |++|+|+++.+..        + +..+..+++|++|+|++      ..+ .-....+..+++|+.|
T Consensus        31 l~~ip~~~~--~~-L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~------N~l~~i~~~~~~~l~~L~~L   93 (229)
T 3e6j_A           31 HASVPAGIP--TN-AQILYLHDNQITK--------LEPGVFDSLINLKELYLGS------NQLGALPVGVFDSLTQLTVL   93 (229)
T ss_dssp             CSSCCSCCC--TT-CSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------SCCCCCCTTTTTTCTTCCEE
T ss_pred             cCccCCCCC--CC-CCEEEcCCCccCc--------cCHHHhhCccCCcEEECCC------CCCCCcChhhcccCCCcCEE
Confidence            445555443  33 8888888887722        1 23456788888888887      444 2222345667888888


Q ss_pred             eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380          209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK  288 (434)
Q Consensus       209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~  288 (434)
                      ++++|......                                 ...+..+++|+.|++++|.+..+|..  ...+++|+
T Consensus        94 ~Ls~N~l~~l~---------------------------------~~~~~~l~~L~~L~Ls~N~l~~lp~~--~~~l~~L~  138 (229)
T 3e6j_A           94 DLGTNQLTVLP---------------------------------SAVFDRLVHLKELFMCCNKLTELPRG--IERLTHLT  138 (229)
T ss_dssp             ECCSSCCCCCC---------------------------------TTTTTTCTTCCEEECCSSCCCSCCTT--GGGCTTCS
T ss_pred             ECCCCcCCccC---------------------------------hhHhCcchhhCeEeccCCcccccCcc--cccCCCCC
Confidence            88877653210                                 01234455666666666665555543  24455666


Q ss_pred             EEEeecCCCCc--ceee-cCCcccEEEecccc
Q 046380          289 LVRMENCRFDG--PVEI-HSPNLETFVYKAGH  317 (434)
Q Consensus       289 ~L~l~~c~~l~--~~~~-~~p~L~~L~l~~~~  317 (434)
                      +|+++++.--.  .-.+ .+++|+.|.+.++.
T Consensus       139 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          139 HLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            66665542111  1112 46677777776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.37  E-value=1.5e-07  Score=80.83  Aligned_cols=107  Identities=11%  Similarity=-0.014  Sum_probs=50.2

Q ss_pred             eeEEEEeeeeeccccccccccccccccc-CcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFF-NPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF  223 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~  223 (434)
                      |+.|++++|.+..        + +.... .++|++|++++      +.+..+ ..+..+++|+.|++++|....      
T Consensus        21 L~~L~l~~n~l~~--------i-~~~~~~~~~L~~L~Ls~------N~l~~~-~~l~~l~~L~~L~Ls~N~l~~------   78 (176)
T 1a9n_A           21 DRELDLRGYKIPV--------I-ENLGATLDQFDAIDFSD------NEIRKL-DGFPLLRRLKTLLVNNNRICR------   78 (176)
T ss_dssp             CEEEECTTSCCCS--------C-CCGGGGTTCCSEEECCS------SCCCEE-CCCCCCSSCCEEECCSSCCCE------
T ss_pred             ceEEEeeCCCCch--------h-HHhhhcCCCCCEEECCC------CCCCcc-cccccCCCCCEEECCCCcccc------
Confidence            6666666666522        1 22232 33666666666      333111 234456666666666665421      


Q ss_pred             ccccc-eeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCC
Q 046380          224 LEFKV-ANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLP  276 (434)
Q Consensus       224 l~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p  276 (434)
                         .. .....+|+|++|+++++...+......+..+++|+.|++++|.+..+|
T Consensus        79 ---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~  129 (176)
T 1a9n_A           79 ---IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  129 (176)
T ss_dssp             ---ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             ---cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence               11 011234444444444433322111113445566666666666555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.33  E-value=1.6e-07  Score=90.62  Aligned_cols=121  Identities=13%  Similarity=0.114  Sum_probs=67.9

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccccc-cc-cCcccceEEEeeecccceEee-ChHHHHHhcCCCcce
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NF-FNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRD  207 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~-~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~  207 (434)
                      ...+|..+..  . ++.|+|+++.+..        +++. .. .+++|++|+|++      ..+ ......+.++++|++
T Consensus        30 l~~iP~~~~~--~-l~~L~Ls~N~l~~--------l~~~~~~~~l~~L~~L~L~~------N~i~~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           30 LPNVPQSLPS--Y-TALLDLSHNNLSR--------LRAEWTPTRLTNLHSLLLSH------NHLNFISSEAFVPVPNLRY   92 (361)
T ss_dssp             CSSCCSSCCT--T-CSEEECCSSCCCE--------ECTTSSSSCCTTCCEEECCS------SCCCEECTTTTTTCTTCCE
T ss_pred             cCccCccCCC--C-CCEEECCCCCCCc--------cChhhhhhcccccCEEECCC------CcCCccChhhccCCCCCCE
Confidence            4455655433  2 7888888887722        1222 33 788888888887      444 222234567888888


Q ss_pred             eeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCC
Q 046380          208 FDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPS  277 (434)
Q Consensus       208 L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~  277 (434)
                      |++++|.....        .......+++|+.|+++++...... ...+..+++|+.|++++|.+..+|.
T Consensus        93 L~Ls~N~l~~~--------~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~  153 (361)
T 2xot_A           93 LDLSSNHLHTL--------DEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPV  153 (361)
T ss_dssp             EECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred             EECCCCcCCcC--------CHHHhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCH
Confidence            88888765211        0111224566666666554433211 1134556666666666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.33  E-value=4.4e-07  Score=81.03  Aligned_cols=69  Identities=6%  Similarity=0.013  Sum_probs=46.0

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..+.  .+ |+.|+++++.+..        +++ .+..+++|++|+|++      ..+ ......+.++++|++|
T Consensus        23 l~~iP~~l~--~~-l~~L~l~~n~i~~--------i~~~~~~~l~~L~~L~Ls~------N~i~~~~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           23 LTEIPTNLP--ET-ITEIRLEQNTIKV--------IPPGAFSPYKKLRRIDLSN------NQISELAPDAFQGLRSLNSL   85 (220)
T ss_dssp             CSSCCSSCC--TT-CCEEECCSSCCCE--------ECTTSSTTCTTCCEEECCS------SCCCEECTTTTTTCSSCCEE
T ss_pred             cCcCCCccC--cC-CCEEECCCCcCCC--------cCHhHhhCCCCCCEEECCC------CcCCCcCHHHhhCCcCCCEE
Confidence            445565543  33 8899998887722        122 456788899999988      444 2223446678888888


Q ss_pred             eeccccCC
Q 046380          209 DEAFVYRP  216 (434)
Q Consensus       209 ~l~~~~~~  216 (434)
                      ++++|...
T Consensus        86 ~Ls~N~l~   93 (220)
T 2v9t_B           86 VLYGNKIT   93 (220)
T ss_dssp             ECCSSCCC
T ss_pred             ECCCCcCC
Confidence            88888763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.30  E-value=2.3e-07  Score=89.82  Aligned_cols=167  Identities=13%  Similarity=-0.007  Sum_probs=81.7

Q ss_pred             CcccceEEEeeecccceEee-C----hHHHHHh-cCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEE
Q 046380          173 NPSVRRLVVRGCMALQGFEM-D----APRLNYF-QCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMV  246 (434)
Q Consensus       173 ~~~L~~L~L~~c~~~~~~~~-~----~l~~~~~-~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~  246 (434)
                      .++|++|+|++      +.+ +    .+...+. .+++|++|++++|...+.       ....+...+++|++|+++++.
T Consensus        71 ~~~L~~L~Ls~------n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~-------~~~~l~~~L~~L~~L~Ls~n~  137 (372)
T 3un9_A           71 LSSLRQLNLAG------VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA-------GLRTLLPVFLRARKLGLQLNS  137 (372)
T ss_dssp             HTTCCEEECTT------SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH-------HHHHTHHHHHTEEEEECCSSC
T ss_pred             HhhCCEEEecC------CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH-------HHHHHHHHHHhccHhhcCCCC
Confidence            45566666666      334 1    2223232 235677777766654211       011111123355555555555


Q ss_pred             eCchhHHHH---h-ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccc
Q 046380          247 LNDRTFESA---L-SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIAS  322 (434)
Q Consensus       247 ~~~~~~~~~---~-~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~  322 (434)
                      .++.....+   + ...++|+.|++++|.++..+....+..+                  -..++|++|+++++.....+
T Consensus       138 l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L------------------~~~~~L~~L~Ls~N~l~~~g  199 (372)
T 3un9_A          138 LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL------------------AGNTSVTHLSLLHTGLGDEG  199 (372)
T ss_dssp             CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH------------------HTCSSCCEEECTTSSCHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH------------------hcCCCcCEEeCCCCCCCcHH
Confidence            444333222   2 2456677777776655432110000000                  02455566666555433221


Q ss_pred             ---eeecCCCCCCccEEEEcCccCCcHHHHHHH---HhcCCccceEEeecccccc
Q 046380          323 ---FHFGGRGFGNIKTLAVNGFLGLRNKSLEEL---ISACILLENLYLNSCAIPK  371 (434)
Q Consensus       323 ---~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l---~~~~p~Le~L~l~~~~~~~  371 (434)
                         +.......++|++|+++++ .+++.+...+   +..+++|+.|+|++|.+..
T Consensus       200 ~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          200 LELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence               1122344567777777777 6666644433   3456777888877777643

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.30  E-value=9.3e-07  Score=75.34  Aligned_cols=89  Identities=11%  Similarity=0.071  Sum_probs=59.3

Q ss_pred             CcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhc---CCccceEEeeccc-cccccccc--ccc
Q 046380          306 PNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISA---CILLENLYLNSCA-IPKGHLEI--YSL  379 (434)
Q Consensus       306 p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~---~p~Le~L~l~~~~-~~~~~~~~--~~~  379 (434)
                      .+|++|+++++..+..++. ....|++|++|.+++|..+++.++..+.+.   +++|+.|+|++|. +++..+..  ..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3456666665544444442 235788888888888877888888888763   5788888888886 43322221  246


Q ss_pred             ccceeEeccCCcccee
Q 046380          380 TLKTLVVHGCDHLHFA  395 (434)
Q Consensus       380 ~L~~L~l~~c~~l~~~  395 (434)
                      +|++|++++|+.+++.
T Consensus       140 ~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             TCCEEEEESCTTCCCH
T ss_pred             CCCEEECCCCCCCCch
Confidence            7888888888877653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.29  E-value=6e-07  Score=77.03  Aligned_cols=91  Identities=13%  Similarity=0.075  Sum_probs=48.7

Q ss_pred             hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380          256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKT  335 (434)
Q Consensus       256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~  335 (434)
                      +..+++|+.|++++|.+..+|... ...+                     ++|+.|+++++....-........+++|++
T Consensus        60 l~~l~~L~~L~Ls~N~l~~~~~~~-~~~l---------------------~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           60 FPLLRRLKTLLVNNNRICRIGEGL-DQAL---------------------PDLTELILTNNSLVELGDLDPLASLKSLTY  117 (176)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCH-HHHC---------------------TTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred             cccCCCCCEEECCCCcccccCcch-hhcC---------------------CCCCEEECCCCcCCcchhhHhhhcCCCCCE
Confidence            455667777777777666555321 1234                     444444444433210000012345667777


Q ss_pred             EEEcCccCCcHH--HHHHHHhcCCccceEEeecccc
Q 046380          336 LAVNGFLGLRNK--SLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       336 L~l~~~~~~~~~--~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      |.++++ .++..  ....++..+|+|+.|+++.+..
T Consensus       118 L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          118 LCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            777766 22211  2233566888888888888765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.28  E-value=3.4e-07  Score=81.71  Aligned_cols=68  Identities=13%  Similarity=0.087  Sum_probs=41.4

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccccc--ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcce
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL--SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRD  207 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~  207 (434)
                      ...+|..+..  . +++|+|+++.+..        +++  .+..+++|++|+|++      ..+ ......+.++++|++
T Consensus        23 l~~iP~~~~~--~-~~~L~L~~N~l~~--------~~~~~~~~~l~~L~~L~L~~------N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           23 LNKIPEHIPQ--Y-TAELRLNNNEFTV--------LEATGIFKKLPQLRKINFSN------NKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             CSSCCSCCCT--T-CSEEECCSSCCCE--------ECCCCCGGGCTTCCEEECCS------SCCCEECTTTTTTCTTCCE
T ss_pred             cccCccCCCC--C-CCEEEcCCCcCCc--------cCchhhhccCCCCCEEECCC------CcCCEECHHHhCCCCCCCE
Confidence            3445554432  2 7788888877622        111  245788888888887      444 222234566788888


Q ss_pred             eeeccccC
Q 046380          208 FDEAFVYR  215 (434)
Q Consensus       208 L~l~~~~~  215 (434)
                      |++++|..
T Consensus        86 L~Ls~N~l   93 (220)
T 2v70_A           86 ILLTSNRL   93 (220)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCcc
Confidence            88887766

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.26  E-value=1.3e-07  Score=82.93  Aligned_cols=112  Identities=12%  Similarity=0.008  Sum_probs=58.9

Q ss_pred             ccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCC
Q 046380          137 VIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRP  216 (434)
Q Consensus       137 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~  216 (434)
                      .+....+ |++|++++|.+..        + +....+++|++|++++      +.+..+......+|+|++|++++|...
T Consensus        43 ~~~~l~~-L~~L~ls~n~l~~--------l-~~~~~l~~L~~L~l~~------n~l~~l~~~~~~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           43 TLSTLKA-CKHLALSTNNIEK--------I-SSLSGMENLRILSLGR------NLIKKIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHTTT-CSEEECSEEEESC--------C-CCHHHHTTCCEEEEEE------EEECSCSSHHHHHHHCSEEEEEEEECC
T ss_pred             HHhcCCC-CCEEECCCCCCcc--------c-cccccCCCCCEEECCC------CCcccccchhhcCCcCCEEECcCCcCC
Confidence            3333444 6666666666521        1 3445666666666666      444222233344566666666666552


Q ss_pred             CCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecccccc
Q 046380          217 DHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGK  274 (434)
Q Consensus       217 ~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  274 (434)
                      ..         . ....+++|+.|+++++...+......+..+++|+.|++++|.+..
T Consensus       107 ~l---------~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          107 SL---------S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             CH---------H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             cC---------C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            21         1 122345566666665555543322345666777777777665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.24  E-value=4.9e-07  Score=81.23  Aligned_cols=129  Identities=16%  Similarity=0.104  Sum_probs=84.3

Q ss_pred             cCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccc
Q 046380          110 RGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       110 ~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~  188 (434)
                      .+++++|+++.+.        ...++...|....+|++|+|+++.+..        +++. +..+++|++|+|++     
T Consensus        39 ~~~L~~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~L~~N~l~~--------i~~~~~~~l~~L~~L~Ls~-----   97 (229)
T 3e6j_A           39 PTNAQILYLHDNQ--------ITKLEPGVFDSLINLKELYLGSNQLGA--------LPVGVFDSLTQLTVLDLGT-----   97 (229)
T ss_dssp             CTTCSEEECCSSC--------CCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS-----
T ss_pred             CCCCCEEEcCCCc--------cCccCHHHhhCccCCcEEECCCCCCCC--------cChhhcccCCCcCEEECCC-----
Confidence            3689999998765        445544444443349999999998832        2233 46899999999998     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEe
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKL  267 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  267 (434)
                       ..+ ......+..+++|++|.+++|.....         ..                         .+..+++|+.|++
T Consensus        98 -N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l---------p~-------------------------~~~~l~~L~~L~L  142 (229)
T 3e6j_A           98 -NQLTVLPSAVFDRLVHLKELFMCCNKLTEL---------PR-------------------------GIERLTHLTHLAL  142 (229)
T ss_dssp             -SCCCCCCTTTTTTCTTCCEEECCSSCCCSC---------CT-------------------------TGGGCTTCSEEEC
T ss_pred             -CcCCccChhHhCcchhhCeEeccCCccccc---------Cc-------------------------ccccCCCCCEEEC
Confidence             555 23334457799999999999876321         10                         2355666777777


Q ss_pred             eccccccCCCCcchhhccCccEEEeecC
Q 046380          268 LSSVFGKLPSSLSSAILKKLKLVRMENC  295 (434)
Q Consensus       268 ~~~~~~~~p~~~~~~~~~~L~~L~l~~c  295 (434)
                      ++|.+..+|.. ....+++|+.|.+.+.
T Consensus       143 ~~N~l~~~~~~-~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          143 DQNQLKSIPHG-AFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CSSCCCCCCTT-TTTTCTTCCEEECTTS
T ss_pred             CCCcCCccCHH-HHhCCCCCCEEEeeCC
Confidence            77766665531 1234566777776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.24  E-value=5e-07  Score=80.66  Aligned_cols=129  Identities=13%  Similarity=0.110  Sum_probs=86.1

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      +++++|++....        ...++...|....+|++|+|+++.+...       .+..+.++++|++|+|++      .
T Consensus        32 ~~l~~L~l~~n~--------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-------~~~~~~~l~~L~~L~Ls~------N   90 (220)
T 2v9t_B           32 ETITEIRLEQNT--------IKVIPPGAFSPYKKLRRIDLSNNQISEL-------APDAFQGLRSLNSLVLYG------N   90 (220)
T ss_dssp             TTCCEEECCSSC--------CCEECTTSSTTCTTCCEEECCSSCCCEE-------CTTTTTTCSSCCEEECCS------S
T ss_pred             cCCCEEECCCCc--------CCCcCHhHhhCCCCCCEEECCCCcCCCc-------CHHHhhCCcCCCEEECCC------C
Confidence            578889887665        5566665565544499999999987220       124567899999999998      5


Q ss_pred             ee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          191 EM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       191 ~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                      .+ .-....+.++++|+.|.+++|.......                                 ..+..+++|+.|++++
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---------------------------------~~~~~l~~L~~L~L~~  137 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRV---------------------------------DAFQDLHNLNLLSLYD  137 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------------------------TTTTTCTTCCEEECCS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCH---------------------------------HHcCCCCCCCEEECCC
Confidence            55 2333446778999999999987732200                                 1345566777777777


Q ss_pred             cccccCCCCcchhhccCccEEEeec
Q 046380          270 SVFGKLPSSLSSAILKKLKLVRMEN  294 (434)
Q Consensus       270 ~~~~~~p~~~~~~~~~~L~~L~l~~  294 (434)
                      |.++.+|... ...+++|++|++++
T Consensus       138 N~l~~~~~~~-~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          138 NKLQTIAKGT-FSPLRAIQTMHLAQ  161 (220)
T ss_dssp             SCCSCCCTTT-TTTCTTCCEEECCS
T ss_pred             CcCCEECHHH-HhCCCCCCEEEeCC
Confidence            7766655321 23356677777765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.20  E-value=3e-07  Score=80.60  Aligned_cols=102  Identities=16%  Similarity=0.094  Sum_probs=47.8

Q ss_pred             CCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccEEE
Q 046380          259 FSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLA  337 (434)
Q Consensus       259 ~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~  337 (434)
                      +++|+.|++++|.+..+|.  ....+++|++|+++++.--....+ .+++|+.|+++++....-........+++|++|.
T Consensus        69 l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           69 MENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             HTTCCEEEEEEEEECSCSS--HHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             CCCCCEEECCCCCcccccc--hhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence            3444444444444444332  122234444444444321111112 3455556665554422101101245667788888


Q ss_pred             EcCccCCc---------HHHHHHHHhcCCccceEE
Q 046380          338 VNGFLGLR---------NKSLEELISACILLENLY  363 (434)
Q Consensus       338 l~~~~~~~---------~~~l~~l~~~~p~Le~L~  363 (434)
                      ++++ .+.         ......++..+|+|+.|+
T Consensus       147 l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          147 LAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            8776 222         123345567888888886

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.20  E-value=7.8e-07  Score=78.46  Aligned_cols=132  Identities=14%  Similarity=0.123  Sum_probs=83.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|+++...        ...++...+....+|++|+++++.+..        +++. +..+++|++|++++      
T Consensus        28 ~~l~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~Ls~------   85 (208)
T 2o6s_A           28 AQTTYLDLETNS--------LKSLPNGVFDELTSLTQLYLGGNKLQS--------LPNGVFNKLTSLTYLNLST------   85 (208)
T ss_dssp             TTCSEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred             CCCcEEEcCCCc--------cCcCChhhhcccccCcEEECCCCccCc--------cChhhcCCCCCcCEEECCC------
Confidence            577888877655        445666555443338888888887722        1232 45788888888887      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                      ..+ ......+..+++|++|+++++......        ......+++|++|++++....... ...+..+++|+.|+++
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLP--------DGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccC--------HhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEec
Confidence            444 222334567888888888888663221        111235688888888776544321 1235678888999988


Q ss_pred             ccccc
Q 046380          269 SSVFG  273 (434)
Q Consensus       269 ~~~~~  273 (434)
                      +|.+.
T Consensus       157 ~N~~~  161 (208)
T 2o6s_A          157 DNPWD  161 (208)
T ss_dssp             SCCBC
T ss_pred             CCCee
Confidence            87543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.19  E-value=5.7e-07  Score=86.63  Aligned_cols=151  Identities=17%  Similarity=0.099  Sum_probs=103.2

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccc--cCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeeccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIF--SSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMAL  187 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~  187 (434)
                      ..++.|+++...        ...++...|  ...+ |++|+|+++.+..        ++ ..+..+++|++|+|++    
T Consensus        39 ~~l~~L~Ls~N~--------l~~l~~~~~~~~l~~-L~~L~L~~N~i~~--------i~~~~~~~l~~L~~L~Ls~----   97 (361)
T 2xot_A           39 SYTALLDLSHNN--------LSRLRAEWTPTRLTN-LHSLLLSHNHLNF--------ISSEAFVPVPNLRYLDLSS----   97 (361)
T ss_dssp             TTCSEEECCSSC--------CCEECTTSSSSCCTT-CCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCS----
T ss_pred             CCCCEEECCCCC--------CCccChhhhhhcccc-cCEEECCCCcCCc--------cChhhccCCCCCCEEECCC----
Confidence            568888887665        566777666  3455 9999999998822        12 2467899999999998    


Q ss_pred             ceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHh---ccCCCCc
Q 046380          188 QGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESAL---SKFSNLE  263 (434)
Q Consensus       188 ~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~---~~~~~L~  263 (434)
                        ..+ ......+.++++|+.|.+++|.....        .......+++|+.|+++++........ .+   ..+++|+
T Consensus        98 --N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--------~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~~~~l~~L~  166 (361)
T 2xot_A           98 --NHLHTLDEFLFSDLQALEVLLLYNNHIVVV--------DRNAFEDMAQLQKLYLSQNQISRFPVE-LIKDGNKLPKLM  166 (361)
T ss_dssp             --SCCCEECTTTTTTCTTCCEEECCSSCCCEE--------CTTTTTTCTTCCEEECCSSCCCSCCGG-GTC----CTTCC
T ss_pred             --CcCCcCCHHHhCCCcCCCEEECCCCcccEE--------CHHHhCCcccCCEEECCCCcCCeeCHH-HhcCcccCCcCC
Confidence              544 22234567899999999999987321        112234678999999988765542211 22   5689999


Q ss_pred             EEEeeccccccCCCCcchhhccC--ccEEEeec
Q 046380          264 TLKLLSSVFGKLPSSLSSAILKK--LKLVRMEN  294 (434)
Q Consensus       264 ~L~l~~~~~~~~p~~~~~~~~~~--L~~L~l~~  294 (434)
                      .|++++|.+..+|.. ....++.  |+.|.+.+
T Consensus       167 ~L~L~~N~l~~l~~~-~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          167 LLDLSSNKLKKLPLT-DLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             EEECCSSCCCCCCHH-HHHHSCHHHHTTEECCS
T ss_pred             EEECCCCCCCccCHH-HhhhccHhhcceEEecC
Confidence            999999999888732 1123333  36677776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.18  E-value=2.1e-06  Score=73.08  Aligned_cols=73  Identities=10%  Similarity=-0.014  Sum_probs=51.9

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-C-hHHHHHhc---CCCc
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQ---CSGI  205 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~---cp~L  205 (434)
                      ...+|........ |++|++++|.+..      .|+ ....++++|++|+|++|     ..+ | ++..+...   |++|
T Consensus        50 ~~~LP~~~~~~~~-L~~LDLs~~~Itd------~GL-~~L~~~~~L~~L~L~~C-----~~ItD~gL~~L~~~~~~~~~L  116 (176)
T 3e4g_A           50 YNHLPTGPLDKYK-IQAIDATDSCIMS------IGF-DHMEGLQYVEKIRLCKC-----HYIEDGCLERLSQLENLQKSM  116 (176)
T ss_dssp             GGGSCCCSTTCCC-EEEEEEESCCCCG------GGG-GGGTTCSCCCEEEEESC-----TTCCHHHHHHHHTCHHHHHHC
T ss_pred             cccCCcccCCCce-EeEEeCcCCCccH------HHH-HHhcCCCCCCEEEeCCC-----CccCHHHHHHHHhcccccCCC
Confidence            4456665444556 9999999998722      244 33468999999999996     345 5 67776653   7889


Q ss_pred             ceeeeccccCC
Q 046380          206 RDFDEAFVYRP  216 (434)
Q Consensus       206 ~~L~l~~~~~~  216 (434)
                      ++|++++|...
T Consensus       117 ~~L~Ls~C~~I  127 (176)
T 3e4g_A          117 LEMEIISCGNV  127 (176)
T ss_dssp             CEEEEESCTTC
T ss_pred             CEEEcCCCCcC
Confidence            99999998764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.11  E-value=1.4e-06  Score=77.65  Aligned_cols=84  Identities=11%  Similarity=0.048  Sum_probs=59.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCcccc-ccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYAL-PRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~l-p~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~  188 (434)
                      ..+++|+++...        ...+ |...|....+|++|+|+++.+..        +++ .+..+++|++|+|++     
T Consensus        32 ~~~~~L~L~~N~--------l~~~~~~~~~~~l~~L~~L~L~~N~i~~--------i~~~~~~~l~~L~~L~Ls~-----   90 (220)
T 2v70_A           32 QYTAELRLNNNE--------FTVLEATGIFKKLPQLRKINFSNNKITD--------IEEGAFEGASGVNEILLTS-----   90 (220)
T ss_dssp             TTCSEEECCSSC--------CCEECCCCCGGGCTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCS-----
T ss_pred             CCCCEEEcCCCc--------CCccCchhhhccCCCCCEEECCCCcCCE--------ECHHHhCCCCCCCEEECCC-----
Confidence            567788887655        4444 34445444449999999998722        123 567899999999998     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCC
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRP  216 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~  216 (434)
                       ..+ ......+.++++|++|.+++|...
T Consensus        91 -N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           91 -NRLENVQHKMFKGLESLKTLMLRSNRIT  118 (220)
T ss_dssp             -SCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred             -CccCccCHhHhcCCcCCCEEECCCCcCC
Confidence             555 333445678999999999998773

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.10  E-value=8.3e-07  Score=85.84  Aligned_cols=169  Identities=15%  Similarity=0.090  Sum_probs=93.9

Q ss_pred             CCCcceeeeccccCCCCccccccccc-ceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcc
Q 046380          202 CSGIRDFDEAFVYRPDHFCCRFLEFK-VANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLS  280 (434)
Q Consensus       202 cp~L~~L~l~~~~~~~~~~~~~l~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~  280 (434)
                      .+.|++|++++|....... .   .+ ..+....++|+.|+++++..++.....+...+++|+.|++++|.++..+....
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~-~---~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L  146 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKC-T---VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL  146 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHH-H---HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHH-H---HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence            4678888888877532110 0   00 00111224555555555544444333333344455555555444332111000


Q ss_pred             hhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccc---eeecCCCCCCccEEEEcCccCCcHHHHHHH---Hh
Q 046380          281 SAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIAS---FHFGGRGFGNIKTLAVNGFLGLRNKSLEEL---IS  354 (434)
Q Consensus       281 ~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~---~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l---~~  354 (434)
                      ...                 +.-..++|++|+++++.....+   +.......++|++|+++++ .+++.++..+   +.
T Consensus       147 ~~~-----------------L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~  208 (372)
T 3un9_A          147 RDL-----------------LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLD  208 (372)
T ss_dssp             HHH-----------------HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGG
T ss_pred             HHH-----------------HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHh
Confidence            000                 0012567778887776643222   2122356789999999999 7888766544   45


Q ss_pred             cCCccceEEeeccccccccccc------cccccceeEeccCCcc
Q 046380          355 ACILLENLYLNSCAIPKGHLEI------YSLTLKTLVVHGCDHL  392 (434)
Q Consensus       355 ~~p~Le~L~l~~~~~~~~~~~~------~~~~L~~L~l~~c~~l  392 (434)
                      ..++|+.|+|++|.+.......      ..++|+.|++++|..-
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            7789999999999985422211      2468999999999644

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.10  E-value=3.8e-06  Score=80.69  Aligned_cols=132  Identities=20%  Similarity=0.157  Sum_probs=80.7

Q ss_pred             HhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCC----cceee-cCCcccEEEecccc---Cc---ccce
Q 046380          255 ALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFD----GPVEI-HSPNLETFVYKAGH---GE---IASF  323 (434)
Q Consensus       255 ~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l----~~~~~-~~p~L~~L~l~~~~---~~---~~~~  323 (434)
                      ++..+|+|+.|.++++.-..+|.    ...++|++|.+..|.--    ..+.. .+|+|+.|++....   ..   ...+
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l~~----~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSIGK----KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBCCS----CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHhcCCCCcEEEEeCCCCceecc----ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            45566777777776652112221    12567888888765321    11122 57899999875321   11   1011


Q ss_pred             --eecCCCCCCccEEEEcCccCCcHHHHHHHHh--cCCccceEEeecccccccc---cc---ccccccceeEeccCCc
Q 046380          324 --HFGGRGFGNIKTLAVNGFLGLRNKSLEELIS--ACILLENLYLNSCAIPKGH---LE---IYSLTLKTLVVHGCDH  391 (434)
Q Consensus       324 --~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~--~~p~Le~L~l~~~~~~~~~---~~---~~~~~L~~L~l~~c~~  391 (434)
                        ......+++|++|.+.++ .+.+.....+.+  .+|+|+.|+|+.|.+....   +.   ...++|+.|++++|..
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence              112245899999999988 677766556654  5789999999998874321   11   1246899999998853

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.07  E-value=1.9e-06  Score=88.12  Aligned_cols=58  Identities=17%  Similarity=0.207  Sum_probs=26.8

Q ss_pred             cCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccC--CCCcchhhccCccEEEeecC
Q 046380          233 SMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKL--PSSLSSAILKKLKLVRMENC  295 (434)
Q Consensus       233 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--p~~~~~~~~~~L~~L~l~~c  295 (434)
                      .+++|+.|+++++..+.-.   .+..+++|+.|++++|.+..+  |..  ...+++|+.|+++++
T Consensus       484 ~l~~L~~L~Ls~N~l~~lp---~l~~l~~L~~L~Ls~N~l~~~~~p~~--l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          484 ALRCLEVLQASDNALENVD---GVANLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGN  543 (567)
T ss_dssp             GCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCSSCCCSSSTTGG--GGGCTTCCEEECTTS
T ss_pred             cCCCCCEEECCCCCCCCCc---ccCCCCCCcEEECCCCCCCCCCCcHH--HhcCCCCCEEEecCC
Confidence            3444444444443333211   344555555555555555544  321  234555555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.06  E-value=6.4e-07  Score=94.41  Aligned_cols=64  Identities=22%  Similarity=0.299  Sum_probs=35.9

Q ss_pred             hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380          256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKT  335 (434)
Q Consensus       256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~  335 (434)
                      +..+++|+.|+|++|.+..+|..  ..                     .+++|++|.++++...  .+...+..+++|++
T Consensus       266 ~~~l~~L~~L~Ls~N~l~~lp~~--~~---------------------~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~  320 (727)
T 4b8c_D          266 IKNLSNLRVLDLSHNRLTSLPAE--LG---------------------SCFQLKYFYFFDNMVT--TLPWEFGNLCNLQF  320 (727)
T ss_dssp             GGGGTTCCEEECTTSCCSSCCSS--GG---------------------GGTTCSEEECCSSCCC--CCCSSTTSCTTCCC
T ss_pred             hhCCCCCCEEeCcCCcCCccChh--hc---------------------CCCCCCEEECCCCCCC--ccChhhhcCCCccE
Confidence            45566666666666666655542  12                     3445555555554322  33334566777888


Q ss_pred             EEEcCccCCc
Q 046380          336 LAVNGFLGLR  345 (434)
Q Consensus       336 L~l~~~~~~~  345 (434)
                      |.|+++ .++
T Consensus       321 L~L~~N-~l~  329 (727)
T 4b8c_D          321 LGVEGN-PLE  329 (727)
T ss_dssp             EECTTS-CCC
T ss_pred             EeCCCC-ccC
Confidence            888777 444

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.02  E-value=2.3e-06  Score=78.85  Aligned_cols=37  Identities=19%  Similarity=0.462  Sum_probs=34.4

Q ss_pred             CCCCCCCHHHHHHHHcCCChHHHH-HHhhhhhhhhhcc
Q 046380            5 DRISFLPDDLTHHIMSLLPMKDIA-RTSILSKRWMSHW   41 (434)
Q Consensus         5 D~is~LPdeiL~~I~s~L~~~~~~-r~~~vskrW~~lw   41 (434)
                      ..+..||+|++.+||++||+++++ +++.|||+|+.+.
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~   86 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV   86 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence            468899999999999999999999 9999999999763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=1.3e-05  Score=75.89  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=32.6

Q ss_pred             CCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeec
Q 046380          234 MSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMEN  294 (434)
Q Consensus       234 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~  294 (434)
                      ..++..+.+.+.. .......+...+++|+.+++.++.+..+|... ...+.+|++|.+..
T Consensus       201 ~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a-F~~~~~L~~l~l~~  259 (329)
T 3sb4_A          201 PRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFT-FAQKKYLLKIKLPH  259 (329)
T ss_dssp             GGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTT-TTTCTTCCEEECCT
T ss_pred             ccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhh-hhCCCCCCEEECCc
Confidence            3445555555432 22333333455788888888877777766421 23344555555544

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.95  E-value=1.9e-06  Score=78.58  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=31.8

Q ss_pred             CCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhh
Q 046380            6 RISFLPDDLTHHIMSLLPMKDIARTSILSKRWMS   39 (434)
Q Consensus         6 ~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~   39 (434)
                      .|+.||+||+.+||+||+++|+++++.|||+||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999985

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.89  E-value=3.1e-06  Score=73.65  Aligned_cols=68  Identities=13%  Similarity=0.082  Sum_probs=46.3

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccccc--ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcce
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL--SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRD  207 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~  207 (434)
                      ...+|..++.  + |++|+++++.+..        +++  .+..+++|++|+|++      ..+ ......+.++++|++
T Consensus        20 l~~ip~~~~~--~-l~~L~l~~n~i~~--------~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~   82 (192)
T 1w8a_A           20 LKEIPRDIPL--H-TTELLLNDNELGR--------ISSDGLFGRLPHLVKLELKR------NQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             CSSCCSCCCT--T-CSEEECCSCCCCS--------BCCSCSGGGCTTCCEEECCS------SCCCCBCTTTTTTCTTCCE
T ss_pred             cCcCccCCCC--C-CCEEECCCCcCCc--------cCCccccccCCCCCEEECCC------CCCCCcCHhHcCCcccCCE
Confidence            4556665544  4 8889998887722        123  256888899999988      555 232445667888888


Q ss_pred             eeeccccC
Q 046380          208 FDEAFVYR  215 (434)
Q Consensus       208 L~l~~~~~  215 (434)
                      |+++++..
T Consensus        83 L~Ls~N~l   90 (192)
T 1w8a_A           83 LQLGENKI   90 (192)
T ss_dssp             EECCSCCC
T ss_pred             EECCCCcC
Confidence            88888866

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=4.4e-05  Score=72.28  Aligned_cols=38  Identities=18%  Similarity=0.164  Sum_probs=20.9

Q ss_pred             CCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          330 FGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       330 ~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ..+++.+.+.+.  +.......+...|++|+.++|.++.+
T Consensus       201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i  238 (329)
T 3sb4_A          201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNA  238 (329)
T ss_dssp             GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred             ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCc
Confidence            345555555554  44444555555566666666666543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.81  E-value=4.4e-06  Score=82.63  Aligned_cols=40  Identities=25%  Similarity=0.360  Sum_probs=36.6

Q ss_pred             CCCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhccc
Q 046380            3 AIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWL   42 (434)
Q Consensus         3 ~~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw~   42 (434)
                      ..|.|+.||+|++.+||+||+++++++++.|||+|+++..
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   50 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence            3589999999999999999999999999999999987543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.80  E-value=6.2e-06  Score=71.85  Aligned_cols=113  Identities=9%  Similarity=0.043  Sum_probs=66.5

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFD  209 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~  209 (434)
                      ...+|..++  .+ |++|+|+++.+..        +|..+..+++|++|+|++      ..+ ......+.++++|++|.
T Consensus        22 l~~ip~~~~--~~-l~~L~L~~n~i~~--------ip~~~~~l~~L~~L~Ls~------N~i~~i~~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           22 LKVLPKGIP--RD-VTELYLDGNQFTL--------VPKELSNYKHLTLIDLSN------NRISTLSNQSFSNMTQLLTLI   84 (193)
T ss_dssp             CSSCCSCCC--TT-CCEEECCSSCCCS--------CCGGGGGCTTCCEEECCS------SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcCCCCCC--CC-CCEEECCCCcCch--------hHHHhhcccCCCEEECCC------CcCCEeCHhHccCCCCCCEEE
Confidence            344555443  23 7777777776632        234556677777777776      444 22223355667777777


Q ss_pred             eccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccE
Q 046380          210 EAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKL  289 (434)
Q Consensus       210 l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~  289 (434)
                      +++|.....                                . ...+..+++|+.|++++|.+..+|... ...+++|++
T Consensus        85 Ls~N~l~~i--------------------------------~-~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~  130 (193)
T 2wfh_A           85 LSYNRLRCI--------------------------------P-PRTFDGLKSLRLLSLHGNDISVVPEGA-FNDLSALSH  130 (193)
T ss_dssp             CCSSCCCBC--------------------------------C-TTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCE
T ss_pred             CCCCccCEe--------------------------------C-HHHhCCCCCCCEEECCCCCCCeeChhh-hhcCccccE
Confidence            777655211                                0 013456777888888887777766421 234667777


Q ss_pred             EEeec
Q 046380          290 VRMEN  294 (434)
Q Consensus       290 L~l~~  294 (434)
                      |++++
T Consensus       131 L~L~~  135 (193)
T 2wfh_A          131 LAIGA  135 (193)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            77776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.79  E-value=1.5e-05  Score=68.17  Aligned_cols=57  Identities=9%  Similarity=-0.048  Sum_probs=28.5

Q ss_pred             eeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccC
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      |++|+++++.+..        +++ ....+++|++|++++      ..+ ......+..+++|++|++++|..
T Consensus        30 l~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           30 ATRLELESNKLQS--------LPHGVFDKLTQLTKLSLSQ------NQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             CSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCS------SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEeCCCcccE--------eCHHHhcCcccccEEECCC------CcceEeChhHccCCCccCEEECCCCCc
Confidence            6666666665521        112 234566666666665      333 11122234556666666665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.77  E-value=4.7e-06  Score=87.80  Aligned_cols=59  Identities=20%  Similarity=0.274  Sum_probs=29.4

Q ss_pred             cCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecC
Q 046380          233 SMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENC  295 (434)
Q Consensus       233 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c  295 (434)
                      .+++|+.|+++++.+..  +...+..+++|+.|+|++|.+..+|..  ...+++|+.|+++++
T Consensus       268 ~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~lp~~--~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          268 NLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFFDNMVTTLPWE--FGNLCNLQFLGVEGN  326 (727)
T ss_dssp             GGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEECCSSCCCCCCSS--TTSCTTCCCEECTTS
T ss_pred             CCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEECCCCCCCccChh--hhcCCCccEEeCCCC
Confidence            34455555554443331  111234556666666666665555543  234555666665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.75  E-value=1.9e-05  Score=68.70  Aligned_cols=105  Identities=15%  Similarity=0.105  Sum_probs=73.9

Q ss_pred             CcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhH
Q 046380          173 NPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF  252 (434)
Q Consensus       173 ~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~  252 (434)
                      .++|++|+|++      ..+..+...+.++++|+.|+++++......                                 
T Consensus        30 ~~~l~~L~L~~------n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~---------------------------------   70 (193)
T 2wfh_A           30 PRDVTELYLDG------NQFTLVPKELSNYKHLTLIDLSNNRISTLS---------------------------------   70 (193)
T ss_dssp             CTTCCEEECCS------SCCCSCCGGGGGCTTCCEEECCSSCCCCCC---------------------------------
T ss_pred             CCCCCEEECCC------CcCchhHHHhhcccCCCEEECCCCcCCEeC---------------------------------
Confidence            36899999988      544222345677888888888888763210                                 


Q ss_pred             HHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEecccc
Q 046380          253 ESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGH  317 (434)
Q Consensus       253 ~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~  317 (434)
                      ...+..+++|++|++++|.+..+|.. ....+++|++|+++++.--...  .+ .+++|+.|++.++.
T Consensus        71 ~~~f~~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           71 NQSFSNMTQLLTLILSYNRLRCIPPR-TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             HhHccCCCCCCEEECCCCccCEeCHH-HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            01357789999999999999887642 1345789999999986432221  23 58999999998865

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.74  E-value=1.3e-05  Score=68.61  Aligned_cols=109  Identities=13%  Similarity=0.141  Sum_probs=70.6

Q ss_pred             cCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCch
Q 046380          172 FNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDR  250 (434)
Q Consensus       172 ~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~  250 (434)
                      ..++|++|++++      ..+ ......+..+++|++|+++++......        ......+++|+.|++++......
T Consensus        26 ~~~~l~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~N~l~~~   91 (177)
T 2o6r_A           26 IPSSATRLELES------NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP--------DGVFDKLTKLTILYLHENKLQSL   91 (177)
T ss_dssp             CCTTCSEEECCS------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCcEEEeCC------CcccEeCHHHhcCcccccEEECCCCcceEeC--------hhHccCCCccCEEECCCCCcccc
Confidence            346888888887      444 222334567888888888888763221        11123577888888877655432


Q ss_pred             hHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCC
Q 046380          251 TFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCR  296 (434)
Q Consensus       251 ~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~  296 (434)
                      . ...+..+++|+.|++++|.++.+|... ...+++|++|++++++
T Consensus        92 ~-~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           92 P-NGVFDKLTQLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             C-TTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             C-HHHhhCCcccCEEECcCCcceEeCHHH-hcCCcccCEEEecCCC
Confidence            1 113467788888888888888776532 2346788888888754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.61  E-value=2.9e-05  Score=76.41  Aligned_cols=38  Identities=29%  Similarity=0.465  Sum_probs=35.7

Q ss_pred             CCCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhc
Q 046380            3 AIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSH   40 (434)
Q Consensus         3 ~~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~l   40 (434)
                      ..|.|+.||+|++.+||+||+++++++++.|||+|+.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            46999999999999999999999999999999999863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.60  E-value=2e-05  Score=68.41  Aligned_cols=123  Identities=9%  Similarity=0.037  Sum_probs=66.1

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCR  222 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~  222 (434)
                      -++++++++.+..        +|...  .++|++|++++      ..+ . .....+..+++|++|+++++......   
T Consensus        10 ~~~l~~s~~~l~~--------ip~~~--~~~l~~L~l~~------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---   70 (192)
T 1w8a_A           10 GTTVDCTGRGLKE--------IPRDI--PLHTTELLLND------NELGRISSDGLFGRLPHLVKLELKRNQLTGIE---   70 (192)
T ss_dssp             TTEEECTTSCCSS--------CCSCC--CTTCSEEECCS------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC---
T ss_pred             CCEEEcCCCCcCc--------CccCC--CCCCCEEECCC------CcCCccCCccccccCCCCCEEECCCCCCCCcC---
Confidence            3567777776622        12222  34899999988      555 2 11224677889999999888763210   


Q ss_pred             cccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcc--
Q 046380          223 FLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGP--  300 (434)
Q Consensus       223 ~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--  300 (434)
                           ..                         .+..+++|+.|++++|.+..++... ...+++|++|+++++.--..  
T Consensus        71 -----~~-------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           71 -----PN-------------------------AFEGASHIQELQLGENKIKEISNKM-FLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             -----TT-------------------------TTTTCTTCCEEECCSCCCCEECSSS-STTCTTCCEEECCSSCCCEECT
T ss_pred             -----Hh-------------------------HcCCcccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCCeeCH
Confidence                 11                         2344555555555555554443211 12345555555555422111  


Q ss_pred             eee-cCCcccEEEecccc
Q 046380          301 VEI-HSPNLETFVYKAGH  317 (434)
Q Consensus       301 ~~~-~~p~L~~L~l~~~~  317 (434)
                      -.+ ..++|++|+++++.
T Consensus       120 ~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          120 GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TSSTTCTTCCEEECTTCC
T ss_pred             HHhhcCCCCCEEEeCCCC
Confidence            122 46677777777654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.57  E-value=1.6e-05  Score=78.01  Aligned_cols=37  Identities=27%  Similarity=0.532  Sum_probs=35.0

Q ss_pred             CCCCCCCCCHH----HHHHHHcCCChHHHHHHhhhhhhhhh
Q 046380            3 AIDRISFLPDD----LTHHIMSLLPMKDIARTSILSKRWMS   39 (434)
Q Consensus         3 ~~D~is~LPde----iL~~I~s~L~~~~~~r~~~vskrW~~   39 (434)
                      ..|.|+.||+|    |+.+||+||++++++++++|||+|++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            46999999999    99999999999999999999999985

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.52  E-value=4e-05  Score=66.20  Aligned_cols=42  Identities=10%  Similarity=0.006  Sum_probs=30.5

Q ss_pred             CCCCCCccEEEE--cCccCCcHHHH---HHHHhcCCccceEEeecccc
Q 046380          327 GRGFGNIKTLAV--NGFLGLRNKSL---EELISACILLENLYLNSCAI  369 (434)
Q Consensus       327 ~~~~~~Lk~L~l--~~~~~~~~~~l---~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ....++|++|++  .++ .+++++.   ...++..++|++|++++|.+
T Consensus       117 L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             GGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            345567888888  556 6777754   44455778899999988876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.51  E-value=0.00015  Score=70.57  Aligned_cols=224  Identities=13%  Similarity=0.137  Sum_probs=117.6

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDE  210 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l  210 (434)
                      ...++...|...+ |+.+.+...--..         ...++.-.+|+++.+...     +.. --...+.+|++|+.+.+
T Consensus       124 i~~I~~~aF~~~~-L~~i~l~~~i~~I---------~~~aF~~~~L~~i~lp~~-----l~~-I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          124 VKSIPKDAFRNSQ-IAKVVLNEGLKSI---------GDMAFFNSTVQEIVFPST-----LEQ-LKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             CCEECTTTTTTCC-CSEEECCTTCCEE---------CTTTTTTCCCCEEECCTT-----CCE-ECSSTTTTCTTCCEEEC
T ss_pred             cCEehHhhcccCC-ccEEEeCCCccEE---------CHHhcCCCCceEEEeCCC-----ccE-ehHHHhhCcccCCeeec
Confidence            3455566666555 8888886541111         122222236888888651     221 01234677999999999


Q ss_pred             ccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEE
Q 046380          211 AFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLV  290 (434)
Q Consensus       211 ~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L  290 (434)
                      ..+...         .+........+|+.+.+......-.  ...+.++++|+.+++..+ +..++...+..  .+|+.+
T Consensus       188 ~~n~l~---------~I~~~aF~~~~L~~l~lp~~l~~I~--~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i  253 (401)
T 4fdw_A          188 SKTKIT---------KLPASTFVYAGIEEVLLPVTLKEIG--SQAFLKTSQLKTIEIPEN-VSTIGQEAFRE--SGITTV  253 (401)
T ss_dssp             TTSCCS---------EECTTTTTTCCCSEEECCTTCCEEC--TTTTTTCTTCCCEECCTT-CCEECTTTTTT--CCCSEE
T ss_pred             CCCcce---------EechhhEeecccCEEEeCCchheeh--hhHhhCCCCCCEEecCCC-ccCcccccccc--CCccEE
Confidence            876542         1222223356777776643211100  114577888888888753 44444322222  478888


Q ss_pred             EeecC-CCCcceee-cCCcccEEEeccccCccc---cee-ecCCCCCCccEEEEcCcc-CCcHHHHHHHHhcCCccceEE
Q 046380          291 RMENC-RFDGPVEI-HSPNLETFVYKAGHGEIA---SFH-FGGRGFGNIKTLAVNGFL-GLRNKSLEELISACILLENLY  363 (434)
Q Consensus       291 ~l~~c-~~l~~~~~-~~p~L~~L~l~~~~~~~~---~~~-~~~~~~~~Lk~L~l~~~~-~~~~~~l~~l~~~~p~Le~L~  363 (434)
                      .+... ..+..-.+ .|++|+++.+.++.....   .+. ..+..|++|+++.+.+.- .+....    +.+|++|+.+.
T Consensus       254 ~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~a----F~~c~~L~~l~  329 (401)
T 4fdw_A          254 KLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGL----LGGNRKVTQLT  329 (401)
T ss_dssp             EEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTT----TTTCCSCCEEE
T ss_pred             EeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhh----hcCCCCccEEE
Confidence            77542 22222233 588888888766542200   111 134567788888776421 111222    25678888888


Q ss_pred             eeccccc-cccccccccccceeEeccC
Q 046380          364 LNSCAIP-KGHLEIYSLTLKTLVVHGC  389 (434)
Q Consensus       364 l~~~~~~-~~~~~~~~~~L~~L~l~~c  389 (434)
                      |..+-.. .......+ +|+.+.+.+.
T Consensus       330 lp~~l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          330 IPANVTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             ECTTCCEECTTSSSSS-CCCEEEECCS
T ss_pred             ECccccEEcHHhCCCC-CCCEEEEcCC
Confidence            7544211 11111223 6666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.33  E-value=2.9e-05  Score=67.10  Aligned_cols=115  Identities=15%  Similarity=0.051  Sum_probs=56.0

Q ss_pred             eeEEEEeee-eecccccccccccccccccCcccceEEEeeecccceEee-C----hHHHHHhcCCCcceeeeccccCCCC
Q 046380          145 LVSLTIRHC-KIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-D----APRLNYFQCSGIRDFDEAFVYRPDH  218 (434)
Q Consensus       145 L~~L~L~~~-~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~----~l~~~~~~cp~L~~L~l~~~~~~~~  218 (434)
                      |++|+|++| .++.   .++..+.......++|++|+|++      +.+ +    .+...+..++.|++|++++|...+.
T Consensus        38 L~~L~L~~n~~i~~---~g~~~l~~~L~~~~~L~~L~Ls~------n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           38 LEEVNLNNIMNIPV---PTLKACAEALKTNTYVKKFSIVG------TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             CCEEECTTCTTCCH---HHHHHHHHHHTTCCSCCEEECTT------SCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             CCEEEecCCCCCCH---HHHHHHHHHHHhCCCcCEEECcC------CCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            666666665 5421   01111112233456677777766      444 2    3344455566777777776655321


Q ss_pred             cccccccccceeeccCCceeEEEE--EeEEeCchh---HHHHhccCCCCcEEEeecccc
Q 046380          219 FCCRFLEFKVANENSMSSLETLVF--SFMVLNDRT---FESALSKFSNLETLKLLSSVF  272 (434)
Q Consensus       219 ~~~~~l~~~~~~~~~~p~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~  272 (434)
                      ..    ..+.......++|++|++  +++.+.+..   +...+...++|++|++++|.+
T Consensus       109 g~----~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          109 GI----LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HH----HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HH----HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            10    001111223445666666  444444433   233445566777777776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.23  E-value=0.00033  Score=59.66  Aligned_cols=17  Identities=12%  Similarity=0.321  Sum_probs=8.6

Q ss_pred             ccCCCCcEEEeeccccc
Q 046380          257 SKFSNLETLKLLSSVFG  273 (434)
Q Consensus       257 ~~~~~L~~L~l~~~~~~  273 (434)
                      ..+++|+.|++++|.+.
T Consensus       102 ~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTCTTCSEEECCSSCBC
T ss_pred             ccccCCCEEEeCCCCcc
Confidence            34455555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.22  E-value=0.00099  Score=64.81  Aligned_cols=199  Identities=12%  Similarity=0.115  Sum_probs=92.2

Q ss_pred             ccccccccccCCCceeEEEEeeee--ecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCK--IGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~--~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L  208 (434)
                      ...++...|...+ |+.+.+...-  ++.          ..+.+|++|+++++..      ..+..+..-.-.|.+|+++
T Consensus       146 i~~I~~~aF~~~~-L~~i~lp~~l~~I~~----------~aF~~c~~L~~l~l~~------n~l~~I~~~aF~~~~L~~l  208 (401)
T 4fdw_A          146 LKSIGDMAFFNST-VQEIVFPSTLEQLKE----------DIFYYCYNLKKADLSK------TKITKLPASTFVYAGIEEV  208 (401)
T ss_dssp             CCEECTTTTTTCC-CCEEECCTTCCEECS----------STTTTCTTCCEEECTT------SCCSEECTTTTTTCCCSEE
T ss_pred             ccEECHHhcCCCC-ceEEEeCCCccEehH----------HHhhCcccCCeeecCC------CcceEechhhEeecccCEE
Confidence            3455555565555 7777776521  121          2345677777777764      2220010001115667777


Q ss_pred             eeccccCCCCcccccccccceeeccCCceeEEEEEeEE--eCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccC
Q 046380          209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMV--LNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKK  286 (434)
Q Consensus       209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~  286 (434)
                      .+...-. .        ........+++|+.+.+.+..  +...    .+.+ .+|+.+.+. +.+..++.. ....+++
T Consensus       209 ~lp~~l~-~--------I~~~aF~~~~~L~~l~l~~~l~~I~~~----aF~~-~~L~~i~lp-~~i~~I~~~-aF~~c~~  272 (401)
T 4fdw_A          209 LLPVTLK-E--------IGSQAFLKTSQLKTIEIPENVSTIGQE----AFRE-SGITTVKLP-NGVTNIASR-AFYYCPE  272 (401)
T ss_dssp             ECCTTCC-E--------ECTTTTTTCTTCCCEECCTTCCEECTT----TTTT-CCCSEEEEE-TTCCEECTT-TTTTCTT
T ss_pred             EeCCchh-e--------ehhhHhhCCCCCCEEecCCCccCcccc----cccc-CCccEEEeC-CCccEEChh-HhhCCCC
Confidence            6653311 0        001112234555555553211  1111    1222 466666663 233333321 1223556


Q ss_pred             ccEEEeecCCC-------Ccceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCcc-CCcHHHHHHHHhcCC
Q 046380          287 LKLVRMENCRF-------DGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFL-GLRNKSLEELISACI  357 (434)
Q Consensus       287 L~~L~l~~c~~-------l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~-~~~~~~l~~l~~~~p  357 (434)
                      |+.+.+.+...       +..-.+ .|++|+.+.+...-..++.  ..+..|.+|+++.|...- .+....    +.+| 
T Consensus       273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~--~aF~~c~~L~~l~lp~~l~~I~~~a----F~~~-  345 (401)
T 4fdw_A          273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQ--GLLGGNRKVTQLTIPANVTQINFSA----FNNT-  345 (401)
T ss_dssp             CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECT--TTTTTCCSCCEEEECTTCCEECTTS----SSSS-
T ss_pred             CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhh--hhhcCCCCccEEEECccccEEcHHh----CCCC-
Confidence            66666654311       111222 4777777776642111111  134567778888775431 111111    2466 


Q ss_pred             ccceEEeecccc
Q 046380          358 LLENLYLNSCAI  369 (434)
Q Consensus       358 ~Le~L~l~~~~~  369 (434)
                      +|+.+++.++..
T Consensus       346 ~L~~l~l~~n~~  357 (401)
T 4fdw_A          346 GIKEVKVEGTTP  357 (401)
T ss_dssp             CCCEEEECCSSC
T ss_pred             CCCEEEEcCCCC
Confidence            788888877654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.15  E-value=0.0003  Score=59.64  Aligned_cols=68  Identities=12%  Similarity=-0.042  Sum_probs=40.3

Q ss_pred             ccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..++  .. |++|+|+++.+..        ++ ..+..+++|++|+|++      ..+ .-....+..+++|++|
T Consensus        21 l~~ip~~~~--~~-l~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~Ls~------N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           21 LASVPTGIP--TT-TQVLYLYDNQITK--------LEPGVFDRLTQLTRLDLDN------NQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             CSSCCSCCC--TT-CSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCS------SCCCCCCTTTTTTCTTCCEE
T ss_pred             cCccCccCC--CC-CcEEEcCCCcCCc--------cChhhhcCcccCCEEECCC------CCcCccChhhccCCCCCCEE
Confidence            444555543  33 7777777776621        11 2355777777887777      444 2222334567777777


Q ss_pred             eeccccC
Q 046380          209 DEAFVYR  215 (434)
Q Consensus       209 ~l~~~~~  215 (434)
                      +++++..
T Consensus        84 ~L~~N~l   90 (170)
T 3g39_A           84 SLNDNQL   90 (170)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCcc
Confidence            7777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.82  E-value=0.00066  Score=57.73  Aligned_cols=93  Identities=11%  Similarity=-0.016  Sum_probs=60.1

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccc-ccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGL-TLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..+.  .+ |++|+|+++.+..        + +..+..+++|++|+|++      ..+ .-....+..+++|+.|
T Consensus        24 l~~iP~~~~--~~-L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~------N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           24 LASVPAGIP--TD-KQRLWLNNNQITK--------LEPGVFDHLVNLQQLYFNS------NKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             CSSCCSCCC--TT-CSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------SCCCCCCTTTTTTCTTCCEE
T ss_pred             CCccCCCcC--CC-CcEEEeCCCCccc--------cCHHHhcCCcCCCEEECCC------CCCCccChhHhCCcchhhEE
Confidence            456666554  34 8888888887722        1 23456888899999988      544 2223345678889999


Q ss_pred             eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeC
Q 046380          209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLN  248 (434)
Q Consensus       209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~  248 (434)
                      ++++|......        ......+++|+.|++++....
T Consensus        87 ~L~~N~l~~l~--------~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           87 DLNDNHLKSIP--------RGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ECCSSCCCCCC--------TTTTTTCTTCSEEECCSSCBC
T ss_pred             ECCCCccceeC--------HHHhccccCCCEEEeCCCCcc
Confidence            98888763221        111335788888888776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.80  E-value=0.00069  Score=57.35  Aligned_cols=83  Identities=13%  Similarity=0.021  Sum_probs=60.7

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccc-cccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLS-NFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|+++...        ...++...|....+|++|+|+++.+..        +++. +..+++|++|+|++      
T Consensus        30 ~~l~~L~L~~N~--------i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------l~~~~f~~l~~L~~L~L~~------   87 (170)
T 3g39_A           30 TTTQVLYLYDNQ--------ITKLEPGVFDRLTQLTRLDLDNNQLTV--------LPAGVFDKLTQLTQLSLND------   87 (170)
T ss_dssp             TTCSEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCS------
T ss_pred             CCCcEEEcCCCc--------CCccChhhhcCcccCCEEECCCCCcCc--------cChhhccCCCCCCEEECCC------
Confidence            688889887665        556655555544449999999998832        2343 46899999999998      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccC
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      ..+ .-....+..+++|+.|.++++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            555 22234567789999999999876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.87  E-value=0.012  Score=53.59  Aligned_cols=84  Identities=17%  Similarity=0.155  Sum_probs=50.6

Q ss_pred             ccCCCCcEEEeeccccccCCC-CcchhhccCccEEEeecCCCCcceeecCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380          257 SKFSNLETLKLLSSVFGKLPS-SLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKT  335 (434)
Q Consensus       257 ~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~  335 (434)
                      ..+++|+.|+|++|.+..++. .-...                     .+|+|+.|+++++.............+ +|++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~---------------------~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~  224 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQ---------------------KAPNLKILNLSGNELKSERELDKIKGL-KLEE  224 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHH---------------------HSTTCCEEECTTSCCCSGGGGGGGTTS-CCSE
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHh---------------------hCCCCCEEECCCCccCCchhhhhcccC-Ccce
Confidence            678999999999988776542 00112                     345555555555443211001112223 7888


Q ss_pred             EEEcCccCCcH------HHHHHHHhcCCccceEE
Q 046380          336 LAVNGFLGLRN------KSLEELISACILLENLY  363 (434)
Q Consensus       336 L~l~~~~~~~~------~~l~~l~~~~p~Le~L~  363 (434)
                      |.+.++ .++.      .....++..+|+|+.|+
T Consensus       225 L~L~~N-pl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          225 LWLDGN-SLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             EECTTS-TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EEccCC-cCccccCcchhHHHHHHHHCcccCeEC
Confidence            888887 4443      34567788999999987

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.79  E-value=0.0045  Score=58.58  Aligned_cols=69  Identities=12%  Similarity=0.028  Sum_probs=40.2

Q ss_pred             ccccccccccCCCceeEEEEee-eeecccccccccccc-cccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcce
Q 046380          131 HYALPRVIFSSGSFLVSLTIRH-CKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRD  207 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~  207 (434)
                      ...+|. +....+ |++|+|++ +.+..        ++ ..+.++++|++|+|++      +.+ ......+.++++|+.
T Consensus        21 l~~ip~-l~~~~~-L~~L~l~~~n~l~~--------~~~~~~~~l~~L~~L~l~~------N~l~~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           21 LDSLHH-LPGAEN-LTELYIENQQHLQH--------LELRDLRGLGELRNLTIVK------SGLRFVAPDAFHFTPRLSR   84 (347)
T ss_dssp             CTTTTT-SCSCSC-CSEEECCSCSSCCE--------ECGGGSCSCCCCSEEECCS------SCCCEECTTGGGSCSCCCE
T ss_pred             CCccCC-CCCCCC-eeEEEccCCCCCCC--------cChhHhccccCCCEEECCC------CccceeCHHHhcCCcCCCE
Confidence            445666 444444 77777775 65521        12 2355777777777777      433 122334566777777


Q ss_pred             eeeccccC
Q 046380          208 FDEAFVYR  215 (434)
Q Consensus       208 L~l~~~~~  215 (434)
                      |+|++|..
T Consensus        85 L~l~~N~l   92 (347)
T 2ifg_A           85 LNLSFNAL   92 (347)
T ss_dssp             EECCSSCC
T ss_pred             EeCCCCcc
Confidence            77777655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.79  E-value=0.0038  Score=59.10  Aligned_cols=82  Identities=15%  Similarity=0.029  Sum_probs=42.4

Q ss_pred             CCCeEEEEEe-ecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHV-RDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~-~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~  188 (434)
                      .++++|+|+. ..        ...+|...|....+|+.|+|++|.+..        +++ .+..+++|++|+|++     
T Consensus        31 ~~L~~L~l~~~n~--------l~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~l~~L~~L~l~~-----   89 (347)
T 2ifg_A           31 ENLTELYIENQQH--------LQHLELRDLRGLGELRNLTIVKSGLRF--------VAPDAFHFTPRLSRLNLSF-----   89 (347)
T ss_dssp             SCCSEEECCSCSS--------CCEECGGGSCSCCCCSEEECCSSCCCE--------ECTTGGGSCSCCCEEECCS-----
T ss_pred             CCeeEEEccCCCC--------CCCcChhHhccccCCCEEECCCCccce--------eCHHHhcCCcCCCEEeCCC-----
Confidence            4566776653 33        445555444433337777777766521        122 335667777777776     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccC
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                       +.+ .-....+...+ |+.|.+.++..
T Consensus        90 -N~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           90 -NALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             -SCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             -CccceeCHHHcccCC-ceEEEeeCCCc
Confidence             433 11112222223 66666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.02  E-value=0.0084  Score=54.55  Aligned_cols=86  Identities=13%  Similarity=-0.053  Sum_probs=44.0

Q ss_pred             HhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecccccc-CCC
Q 046380          199 YFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGK-LPS  277 (434)
Q Consensus       199 ~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~p~  277 (434)
                      ..++|+|++|+|++|......      .+......+|+|+.|++++....+..-...+..+ +|+.|++.+|.+.. +|.
T Consensus       166 ~~~l~~L~~L~Ls~N~l~~l~------~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          166 EENIPELLSLNLSNNRLYRLD------DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HHHCTTCCEEECTTSCCCCCG------GGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred             HhhCCCCCEEECCCCCCCCCc------cchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCc
Confidence            355666666666666653321      1112223566666666665554433111122233 77777777776653 331


Q ss_pred             -----CcchhhccCccEEE
Q 046380          278 -----SLSSAILKKLKLVR  291 (434)
Q Consensus       278 -----~~~~~~~~~L~~L~  291 (434)
                           ......|++|+.|+
T Consensus       239 ~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          239 QSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHHHCTTCCEES
T ss_pred             chhHHHHHHHHCcccCeEC
Confidence                 01134566777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.93  E-value=0.02  Score=55.18  Aligned_cols=65  Identities=6%  Similarity=0.024  Sum_probs=38.9

Q ss_pred             cccccccc-CCCceeEEEEeeeee--cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceee
Q 046380          133 ALPRVIFS-SGSFLVSLTIRHCKI--GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFD  209 (434)
Q Consensus       133 ~lp~~~~~-~~~~L~~L~L~~~~~--~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~  209 (434)
                      .+....|. |.+ |+.+.+.....  ..          ..+.++++|+.+.+...     +.. --...+.+|+.|+.+.
T Consensus       152 ~i~~~aF~~c~~-L~~i~l~~~~~~I~~----------~~F~~c~~L~~i~l~~~-----~~~-I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          152 VIGDEAFATCES-LEYVSLPDSMETLHN----------GLFSGCGKLKSIKLPRN-----LKI-IRDYCFAECILLENME  214 (394)
T ss_dssp             EECTTTTTTCTT-CCEEECCTTCCEECT----------TTTTTCTTCCBCCCCTT-----CCE-ECTTTTTTCTTCCBCC
T ss_pred             ccchhhhcccCC-CcEEecCCccceecc----------ccccCCCCceEEEcCCC-----ceE-eCchhhccccccceee
Confidence            34444454 555 99998865422  22          24557889999888652     221 1123456788888887


Q ss_pred             ecccc
Q 046380          210 EAFVY  214 (434)
Q Consensus       210 l~~~~  214 (434)
                      +....
T Consensus       215 ~~~~~  219 (394)
T 4fs7_A          215 FPNSL  219 (394)
T ss_dssp             CCTTC
T ss_pred             cCCCc
Confidence            76543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.45  E-value=0.043  Score=52.85  Aligned_cols=32  Identities=19%  Similarity=0.153  Sum_probs=17.8

Q ss_pred             CCeEEEEEeecCCCCCCCCcccccccccc-CCCceeEEEEeee
Q 046380          112 KLQKLDLHVRDHVGNSLCDHYALPRVIFS-SGSFLVSLTIRHC  153 (434)
Q Consensus       112 ~l~~L~l~~~~~~~~~~~~~~~lp~~~~~-~~~~L~~L~L~~~  153 (434)
                      .++++.+-         .....+....|. |.+ |+.+.+..+
T Consensus        65 ~L~sI~iP---------~svt~Ig~~AF~~C~~-L~~i~~~~n   97 (394)
T 4gt6_A           65 VLTSVQIP---------DTVTEIGSNAFYNCTS-LKRVTIQDN   97 (394)
T ss_dssp             CCCEEEEC---------TTCCEECTTTTTTCTT-CCEEEEGGG
T ss_pred             cCEEEEEC---------CCeeEEhHHHhhCCcc-CceEeecCC
Confidence            36666662         123455555554 455 777777543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.34  E-value=0.047  Score=52.56  Aligned_cols=39  Identities=8%  Similarity=0.025  Sum_probs=26.8

Q ss_pred             ccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccc
Q 046380          169 SNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFV  213 (434)
Q Consensus       169 ~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~  213 (434)
                      .+.++++|+++.+...     +.. --...+.+|++|+.+.+...
T Consensus       157 aF~~c~~L~~i~l~~~-----~~~-I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS-----MET-LHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTTCTTCCEEECCTT-----CCE-ECTTTTTTCTTCCBCCCCTT
T ss_pred             hhcccCCCcEEecCCc-----cce-eccccccCCCCceEEEcCCC
Confidence            4568899999999752     211 11234678999999998654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.46  E-value=0.71  Score=44.14  Aligned_cols=105  Identities=13%  Similarity=0.148  Sum_probs=47.0

Q ss_pred             hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecC-CCCcceee-cCCcccEEEeccccCcccceeecCCCCCCc
Q 046380          256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENC-RFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNI  333 (434)
Q Consensus       256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c-~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L  333 (434)
                      +..+.+|+.+.+..... .++.. ....+.+|+.+.+... ..+..-.+ .|.+|+++.+...-..++.  ..+..|.+|
T Consensus       261 F~~c~~L~~i~lp~~~~-~I~~~-aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~--~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVV-SIGTG-AFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD--DAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCC-EECTT-TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT--TTTTTCTTC
T ss_pred             eeecccccEEecccccc-eecCc-ccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH--hHhhCCCCC
Confidence            45566666666543311 11110 0122445665555421 11111122 3666666666432111111  124556667


Q ss_pred             cEEEEcCc-cCCcHHHHHHHHhcCCccceEEeeccc
Q 046380          334 KTLAVNGF-LGLRNKSLEELISACILLENLYLNSCA  368 (434)
Q Consensus       334 k~L~l~~~-~~~~~~~l~~l~~~~p~Le~L~l~~~~  368 (434)
                      +++.|... ..+...++    .+|++|+.+++.++.
T Consensus       337 ~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          337 ERIAIPSSVTKIPESAF----SNCTALNNIEYSGSR  368 (394)
T ss_dssp             CEEEECTTCCBCCGGGG----TTCTTCCEEEESSCH
T ss_pred             CEEEECcccCEEhHhHh----hCCCCCCEEEECCce
Confidence            77766432 12223322    466677777666544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=85.40  E-value=0.83  Score=39.14  Aligned_cols=35  Identities=14%  Similarity=0.165  Sum_probs=16.0

Q ss_pred             CCccEEEEcCccCCcHHHHHHHHh---cCCccceEEeec
Q 046380          331 GNIKTLAVNGFLGLRNKSLEELIS---ACILLENLYLNS  366 (434)
Q Consensus       331 ~~Lk~L~l~~~~~~~~~~l~~l~~---~~p~Le~L~l~~  366 (434)
                      ++|++|+|+++ .+++.+...+.+   .-..|+.|+|++
T Consensus        98 ~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           98 PSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             SSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            34555555555 445544443333   223455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=83.22  E-value=0.47  Score=40.73  Aligned_cols=21  Identities=5%  Similarity=-0.146  Sum_probs=10.0

Q ss_pred             HHHHHhcCCCcceeeeccccC
Q 046380          195 PRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       195 l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      +...+...+.|++|+|..|..
T Consensus        90 lA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           90 LIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             HHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHhcCCccCeEecCCCcC
Confidence            334444445555555554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	7e-07
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.001

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 7e-07
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 1  MEAIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSH------W--LCFPVQEFDES 52
              D IS LP +L  +++S L  KD+ + +   + W         W   C      +  
Sbjct: 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPL 72

Query: 53 WFKGRRESCGRDFHEYLRRSLARRD 77
            K R+       H   + +  R+ 
Sbjct: 73 HIKRRKVIKPGFIHSPWKSAYIRQH 97

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 5  DRISFLPDDLTHHIMSLLPMKDIARTSILSKRW 37
          D I+ LP +++  I + L  +DI  +  +S+ W
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNW 36

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 10 LPDDLTHHIMSLLPMKDIARTSILSKRW 37
          LPD+L   I S L + ++ + S + KRW
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRW 31

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 5  DRISFLP----DDLTHHIMSLLPMKDIARTSILSKRWM------SHWLCFPVQEFD-ESW 53
          D I+ LP    D +  +I+S L  K +    ++ K W         W     +    +S 
Sbjct: 9  DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSL 68

Query: 54 FKGRRESCGRDFHEYLRRS 72
          ++G  E  G   + +  + 
Sbjct: 69 WRGLAERRGWGQYLFKNKP 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.19
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.12
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.1
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.06
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.04
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.96
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.9
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.86
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.85
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.81
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.78
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.77
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.69
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.62
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.47
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.44
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.21
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.08
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.82
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.55
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.54

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7e-15  Score=135.47  Aligned_cols=59  Identities=10%  Similarity=0.043  Sum_probs=31.9

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccC
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      |++|++++|.+..      .++......+++|++|+|++      +.+ +.....++.+|+|++|++++|..
T Consensus        48 L~~LdLs~~~i~~------~~l~~l~~~c~~L~~L~L~~------~~l~~~~~~~l~~~~~L~~L~Ls~c~~  107 (284)
T d2astb2          48 VQHMDLSNSVIEV------STLHGILSQCSKLQNLSLEG------LRLSDPIVNTLAKNSNLVRLNLSGCSG  107 (284)
T ss_dssp             CCEEECTTCEECH------HHHHHHHTTBCCCSEEECTT------CBCCHHHHHHHTTCTTCSEEECTTCBS
T ss_pred             CCEEECCCCccCH------HHHHHHHHhCCCcccccccc------cCCCcHHHHHHhcCCCCcCcccccccc
Confidence            6666666665521      11122344666666666666      434 33333345566666666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.6e-15  Score=136.11  Aligned_cols=207  Identities=17%  Similarity=0.178  Sum_probs=144.8

Q ss_pred             cccCcccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeE-E
Q 046380          170 NFFNPSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFM-V  246 (434)
Q Consensus       170 ~~~~~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~-~  246 (434)
                      .....+|++|++++      +.+ + .+..++..||+|++|.+.+|...+. .      .. ....+|+|++|+++++ .
T Consensus        42 ~~~~~~L~~LdLs~------~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~-~------~~-~l~~~~~L~~L~Ls~c~~  107 (284)
T d2astb2          42 HFSPFRVQHMDLSN------SVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-I------VN-TLAKNSNLVRLNLSGCSG  107 (284)
T ss_dssp             CCCCBCCCEEECTT------CEECHHHHHHHHTTBCCCSEEECTTCBCCHH-H------HH-HHTTCTTCSEEECTTCBS
T ss_pred             hccCCCCCEEECCC------CccCHHHHHHHHHhCCCcccccccccCCCcH-H------HH-HHhcCCCCcCcccccccc
Confidence            34567899999998      666 3 7888999999999999999965321 1      11 1235789999999885 4


Q ss_pred             eCchhHHHHhccCCCCcEEEeeccc-cccCCC-CcchhhccCccEEEeecCC-CCcceee-----cCCcccEEEecccc-
Q 046380          247 LNDRTFESALSKFSNLETLKLLSSV-FGKLPS-SLSSAILKKLKLVRMENCR-FDGPVEI-----HSPNLETFVYKAGH-  317 (434)
Q Consensus       247 ~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~p~-~~~~~~~~~L~~L~l~~c~-~l~~~~~-----~~p~L~~L~l~~~~-  317 (434)
                      .++.....+...+++|+.|++++|. +..... ......+++|++|++++|. .+....+     .+|+|++|+++++. 
T Consensus       108 itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~  187 (284)
T d2astb2         108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  187 (284)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             ccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccC
Confidence            6666666677889999999999873 322110 0112235789999999874 3443222     58999999998754 


Q ss_pred             CcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEeccCCccce
Q 046380          318 GEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCDHLHF  394 (434)
Q Consensus       318 ~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  394 (434)
                      .+...+ .....+++|++|.+++|..+++.++..+ ..+|+|+.|++.+| ..+..+......+.+|.+ +|.+++.
T Consensus       188 itd~~~-~~l~~~~~L~~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i-~~~~ls~  260 (284)
T d2astb2         188 LKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQI-NCSHFTT  260 (284)
T ss_dssp             CCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEE-SCCCSCC
T ss_pred             CCchhh-hhhcccCcCCEEECCCCCCCChHHHHHH-hcCCCCCEEeeeCC-CCHHHHHHHHHhCccccc-cCccCCC
Confidence            333332 2345788999999999878888877765 47899999999988 434555544455666666 4555553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=9.9e-11  Score=111.28  Aligned_cols=242  Identities=11%  Similarity=0.056  Sum_probs=135.0

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      .++++|++..+.        ...+. .+-...+ |++|++++|.+ +.          +....+++|++|++++      
T Consensus        44 ~~l~~L~l~~~~--------I~~l~-gl~~L~n-L~~L~Ls~N~l~~l----------~~l~~L~~L~~L~L~~------   97 (384)
T d2omza2          44 DQVTTLQADRLG--------IKSID-GVEYLNN-LTQINFSNNQLTDI----------TPLKNLTKLVDILMNN------   97 (384)
T ss_dssp             TTCCEEECCSSC--------CCCCT-TGGGCTT-CCEEECCSSCCCCC----------GGGTTCTTCCEEECCS------
T ss_pred             CCCCEEECCCCC--------CCCcc-ccccCCC-CCEEeCcCCcCCCC----------ccccCCcccccccccc------
Confidence            578888887654        22232 2323344 88999988877 43          4467888899999888      


Q ss_pred             Eee-ChHHHHHhcCCCcceeeeccccCCCCcccc----------------------------------------c-----
Q 046380          190 FEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCR----------------------------------------F-----  223 (434)
Q Consensus       190 ~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~----------------------------------------~-----  223 (434)
                      +.+ + +.. ++.+++|+.|.+.++...+.....                                        .     
T Consensus        98 n~i~~-i~~-l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (384)
T d2omza2          98 NQIAD-ITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT  175 (384)
T ss_dssp             SCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCT
T ss_pred             ccccc-ccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccc
Confidence            555 3 111 567888888888777654321100                                        0     


Q ss_pred             ----------ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEee
Q 046380          224 ----------LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRME  293 (434)
Q Consensus       224 ----------l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~  293 (434)
                                ..........+++++.+.+++....+..   -....++|++|+++++.+..+|.   ...+++|+.|++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~  249 (384)
T d2omza2         176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLA  249 (384)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECC
T ss_pred             ccccccccccccccccccccccccceeeccCCccCCCC---cccccCCCCEEECCCCCCCCcch---hhcccccchhccc
Confidence                      0000112233456666666554333211   23556788888888887776653   3457788888888


Q ss_pred             cCCCCcceee-cCCcccEEEeccccCcc-cce------------------eecCCCCCCccEEEEcCccCCcHHHHHHHH
Q 046380          294 NCRFDGPVEI-HSPNLETFVYKAGHGEI-ASF------------------HFGGRGFGNIKTLAVNGFLGLRNKSLEELI  353 (434)
Q Consensus       294 ~c~~l~~~~~-~~p~L~~L~l~~~~~~~-~~~------------------~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~  353 (434)
                      ++.-.....+ .+++|++|.++++.... ..+                  ......++++++|+++++ .+.+-  .. +
T Consensus       250 ~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l--~~-l  325 (384)
T d2omza2         250 NNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDI--SP-V  325 (384)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCC--GG-G
T ss_pred             cCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCC-CCCCC--cc-c
Confidence            7653333334 57888888876654220 000                  001234456666666655 33321  11 3


Q ss_pred             hcCCccceEEeeccccccccccccccccceeEeccCC
Q 046380          354 SACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHGCD  390 (434)
Q Consensus       354 ~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~  390 (434)
                      ..+|+|++|++++|.+..-..-...++|+.|++++|.
T Consensus       326 ~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         326 SSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCc
Confidence            4566677777666665221101123466666666653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.12  E-value=2.7e-11  Score=112.43  Aligned_cols=242  Identities=12%  Similarity=0.074  Sum_probs=149.3

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeee-ee-cccccccccccccccccCcccceEEEeeecccc
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHC-KI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~-~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      .+|++|++....     ......+|..+..... |++|+|+++ .+ +.        +|+....+++|++|+|++     
T Consensus        50 ~~v~~L~L~~~~-----l~g~~~lp~~l~~L~~-L~~L~Ls~~N~l~g~--------iP~~i~~L~~L~~L~Ls~-----  110 (313)
T d1ogqa_          50 YRVNNLDLSGLN-----LPKPYPIPSSLANLPY-LNFLYIGGINNLVGP--------IPPAIAKLTQLHYLYITH-----  110 (313)
T ss_dssp             CCEEEEEEECCC-----CSSCEECCGGGGGCTT-CSEEEEEEETTEESC--------CCGGGGGCTTCSEEEEEE-----
T ss_pred             EEEEEEECCCCC-----CCCCCCCChHHhcCcc-ccccccccccccccc--------cccccccccccchhhhcc-----
Confidence            368899998765     2234468888887778 999999985 45 22        456788999999999998     


Q ss_pred             eEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCC-CcEEE
Q 046380          189 GFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSN-LETLK  266 (434)
Q Consensus       189 ~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~  266 (434)
                       ..+ ......+..++.|+.+.+.++.....        .+.....+++|+.+.+++....+. ....+..+++ ++.+.
T Consensus       111 -N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~--------~p~~l~~l~~L~~l~l~~n~l~~~-ip~~~~~l~~l~~~l~  180 (313)
T d1ogqa_         111 -TNVSGAIPDFLSQIKTLVTLDFSYNALSGT--------LPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             -ECCEEECCGGGGGCTTCCEEECCSSEEESC--------CCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEE
T ss_pred             -ccccccccccccchhhhccccccccccccc--------CchhhccCcccceeeccccccccc-cccccccccccccccc
Confidence             555 33344467789999999998865321        222334678888888876543321 1112344444 47888


Q ss_pred             eeccccccCCCCcchhhcc--CccEEEeecCCCCcce--ee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCc
Q 046380          267 LLSSVFGKLPSSLSSAILK--KLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGF  341 (434)
Q Consensus       267 l~~~~~~~~p~~~~~~~~~--~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~  341 (434)
                      ++.+.+...+..    .+.  .+..+++..+.....+  .+ ..++++.+.+..+...  +.......+++|+.|+++++
T Consensus       181 ~~~n~l~~~~~~----~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~--~~~~~~~~~~~L~~L~Ls~N  254 (313)
T d1ogqa_         181 ISRNRLTGKIPP----TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             CCSSEEEEECCG----GGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC--CBGGGCCCCTTCCEEECCSS
T ss_pred             cccccccccccc----cccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccCccC
Confidence            887776653221    123  3334555544322111  12 5788888887776532  22224556788999999887


Q ss_pred             cCCcHHHHHHHHhcCCccceEEeecccccccccccc--ccccceeEeccCC
Q 046380          342 LGLRNKSLEELISACILLENLYLNSCAIPKGHLEIY--SLTLKTLVVHGCD  390 (434)
Q Consensus       342 ~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~--~~~L~~L~l~~c~  390 (434)
                       .++.. ++.-+.++++|+.|+|++|++ .+.++..  ..+|+.+.+.+++
T Consensus       255 -~l~g~-iP~~l~~L~~L~~L~Ls~N~l-~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         255 -RIYGT-LPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             -CCEEC-CCGGGGGCTTCCEEECCSSEE-EEECCCSTTGGGSCGGGTCSSS
T ss_pred             -eeccc-CChHHhCCCCCCEEECcCCcc-cccCCCcccCCCCCHHHhCCCc
Confidence             44432 223345788999999999887 3333321  2355555565554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=2.1e-10  Score=108.96  Aligned_cols=235  Identities=11%  Similarity=0.078  Sum_probs=139.0

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      +++++|+++.+.        ...+|. +..+.+ |++|++++|.+ +.          +....+++|+.|++.++....-
T Consensus        66 ~nL~~L~Ls~N~--------l~~l~~-l~~L~~-L~~L~L~~n~i~~i----------~~l~~l~~L~~L~~~~~~~~~~  125 (384)
T d2omza2          66 NNLTQINFSNNQ--------LTDITP-LKNLTK-LVDILMNNNQIADI----------TPLANLTNLTGLTLFNNQITDI  125 (384)
T ss_dssp             TTCCEEECCSSC--------CCCCGG-GTTCTT-CCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCEEeCcCCc--------CCCCcc-ccCCcc-cccccccccccccc----------cccccccccccccccccccccc
Confidence            789999998765        444543 344555 99999999987 44          4467888899888876322100


Q ss_pred             ----------------Eee----------------------------------------C--hHHHHHhcCCCcceeeec
Q 046380          190 ----------------FEM----------------------------------------D--APRLNYFQCSGIRDFDEA  211 (434)
Q Consensus       190 ----------------~~~----------------------------------------~--~l~~~~~~cp~L~~L~l~  211 (434)
                                      ..+                                        .  ........+++++.+.+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~  205 (384)
T d2omza2         126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT  205 (384)
T ss_dssp             GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeecc
Confidence                            000                                        0  001123445555555555


Q ss_pred             cccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEE
Q 046380          212 FVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVR  291 (434)
Q Consensus       212 ~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~  291 (434)
                      ++......          .....++|+.|.++++...+..   .+..+++|+.|++.++.+..++.   ...+++|++|+
T Consensus       206 ~n~i~~~~----------~~~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~  269 (384)
T d2omza2         206 NNQISDIT----------PLGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELK  269 (384)
T ss_dssp             SSCCCCCG----------GGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEE
T ss_pred             CCccCCCC----------cccccCCCCEEECCCCCCCCcc---hhhcccccchhccccCccCCCCc---ccccccCCEee
Confidence            55432211          1233566777776665444321   34566677777777666655432   23355666666


Q ss_pred             eecCCC----------------------Ccceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHH
Q 046380          292 MENCRF----------------------DGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKS  348 (434)
Q Consensus       292 l~~c~~----------------------l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~  348 (434)
                      ++++.-                      .....+ .+++++.|+++++...  .+ .....+++|++|.++++ .++.  
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~--~l-~~l~~l~~L~~L~L~~n-~l~~--  343 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS--DI-SPVSSLTKLQRLFFANN-KVSD--  343 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS--CC-GGGGGCTTCCEEECCSS-CCCC--
T ss_pred             ccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCC--CC-cccccCCCCCEEECCCC-CCCC--
Confidence            654321                      111112 4778888888776533  22 12567899999999998 5543  


Q ss_pred             HHHHHhcCCccceEEeeccccccccccc-cccccceeEeccC
Q 046380          349 LEELISACILLENLYLNSCAIPKGHLEI-YSLTLKTLVVHGC  389 (434)
Q Consensus       349 l~~l~~~~p~Le~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c  389 (434)
                      +.. +..+|+|+.|++++|++. +..+. ..++|+.|++++.
T Consensus       344 l~~-l~~l~~L~~L~l~~N~l~-~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 VSS-LANLTNINWLSAGHNQIS-DLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CGG-GGGCTTCCEEECCSSCCC-BCGGGTTCTTCSEEECCCE
T ss_pred             Chh-HcCCCCCCEEECCCCcCC-CChhhccCCCCCEeeCCCC
Confidence            222 468999999999999873 32222 2458888888763

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.8e-11  Score=74.84  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=32.1

Q ss_pred             CCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhcc
Q 046380            8 SFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHW   41 (434)
Q Consensus         8 s~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw   41 (434)
                      +.||+||+.+||+||+.+|+++++.|||+|+++-
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999854

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=4.2e-10  Score=99.21  Aligned_cols=180  Identities=11%  Similarity=0.086  Sum_probs=92.7

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF  223 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~  223 (434)
                      |+.|++.+|.+ +.          +....+++|++|++++      ..+..+.. +..+++|+.+.+.++...+..    
T Consensus        43 L~~L~l~~~~i~~l----------~~l~~l~~L~~L~ls~------n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~----  101 (227)
T d1h6ua2          43 ITTLSAFGTGVTTI----------EGVQYLNNLIGLELKD------NQITDLAP-LKNLTKITELELSGNPLKNVS----  101 (227)
T ss_dssp             CCEEECTTSCCCCC----------TTGGGCTTCCEEECCS------SCCCCCGG-GTTCCSCCEEECCSCCCSCCG----
T ss_pred             cCEEECCCCCCCcc----------hhHhcCCCCcEeecCC------ceeecccc-ccccccccccccccccccccc----
Confidence            67777776665 33          3455677777777776      43311111 456677777776666542210    


Q ss_pred             ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee
Q 046380          224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI  303 (434)
Q Consensus       224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~  303 (434)
                                                     .+..+++|+.++++++.....+.   ....+.++.+.+..+.......+
T Consensus       102 -------------------------------~l~~l~~L~~l~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~  147 (227)
T d1h6ua2         102 -------------------------------AIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISPL  147 (227)
T ss_dssp             -------------------------------GGTTCTTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGG
T ss_pred             -------------------------------cccccccccccccccccccccch---hccccchhhhhchhhhhchhhhh
Confidence                                           13345555555555444333221   11234555555555433332233


Q ss_pred             -cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc-cccccc
Q 046380          304 -HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE-IYSLTL  381 (434)
Q Consensus       304 -~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~-~~~~~L  381 (434)
                       .+++|++|.+.++...  .. .....+++|++|+++++ .+.+  +.. +.++|+|+.|++++|++.. ... ....+|
T Consensus       148 ~~~~~L~~L~l~~n~~~--~~-~~l~~l~~L~~L~Ls~n-~l~~--l~~-l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L  219 (227)
T d1h6ua2         148 AGLTNLQYLSIGNAQVS--DL-TPLANLSKLTTLKADDN-KISD--ISP-LASLPNLIEVHLKNNQISD-VSPLANTSNL  219 (227)
T ss_dssp             GGCTTCCEEECCSSCCC--CC-GGGTTCTTCCEEECCSS-CCCC--CGG-GGGCTTCCEEECTTSCCCB-CGGGTTCTTC
T ss_pred             ccccccccccccccccc--cc-hhhcccccceecccCCC-ccCC--Chh-hcCCCCCCEEECcCCcCCC-CcccccCCCC
Confidence             5666777776665422  11 12455677777777766 3332  111 3567777777777776522 111 123456


Q ss_pred             ceeEec
Q 046380          382 KTLVVH  387 (434)
Q Consensus       382 ~~L~l~  387 (434)
                      +.|+++
T Consensus       220 ~~L~ls  225 (227)
T d1h6ua2         220 FIVTLT  225 (227)
T ss_dssp             CEEEEE
T ss_pred             CEEEee
Confidence            666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.04  E-value=2.4e-10  Score=105.37  Aligned_cols=202  Identities=9%  Similarity=0.063  Sum_probs=101.4

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..++.  + +++|+|+++.+..        +++ .+.++++|++|++++      ..+ .-....+.++++|+.|
T Consensus        22 L~~lP~~l~~--~-l~~L~Ls~N~i~~--------l~~~~f~~l~~L~~L~l~~------n~~~~i~~~~f~~l~~L~~L   84 (305)
T d1xkua_          22 LEKVPKDLPP--D-TALLDLQNNKITE--------IKDGDFKNLKNLHTLILIN------NKISKISPGAFAPLVKLERL   84 (305)
T ss_dssp             CCSCCCSCCT--T-CCEEECCSSCCCC--------BCTTTTTTCTTCCEEECCS------SCCCCBCTTTTTTCTTCCEE
T ss_pred             CCccCCCCCC--C-CCEEECcCCcCCC--------cChhHhhcccccccccccc------ccccccchhhhhCCCccCEe
Confidence            4566666542  3 8888888887722        233 356788888888887      444 2223345678888888


Q ss_pred             eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCc-------------------------hhHHHHhccCCCCc
Q 046380          209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLND-------------------------RTFESALSKFSNLE  263 (434)
Q Consensus       209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~-------------------------~~~~~~~~~~~~L~  263 (434)
                      .+.+|.......           ...+.++.|...+.....                         ......+..+++|+
T Consensus        85 ~l~~n~l~~l~~-----------~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~  153 (305)
T d1xkua_          85 YLSKNQLKELPE-----------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  153 (305)
T ss_dssp             ECCSSCCSBCCS-----------SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             cccCCccCcCcc-----------chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccC
Confidence            888886532211           112333333333221111                         00111234555666


Q ss_pred             EEEeeccccccCCCCcchhhccCccEEEeecCCCCcce--ee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEc
Q 046380          264 TLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV--EI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVN  339 (434)
Q Consensus       264 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~--~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~  339 (434)
                      .+++.++.+..+|..    .+++|++|++.++......  .+ .+++++.|.++++...  ++. ..+..+++|++|+++
T Consensus       154 ~l~l~~n~l~~l~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~--~~~~~~~~~l~~L~~L~L~  227 (305)
T d1xkua_         154 YIRIADTNITTIPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLN  227 (305)
T ss_dssp             EEECCSSCCCSCCSS----CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC--EECTTTGGGSTTCCEEECC
T ss_pred             ccccccCCccccCcc----cCCccCEEECCCCcCCCCChhHhhcccccccccccccccc--ccccccccccccceeeecc
Confidence            666666555555432    2455666665554322211  12 3555555555554322  111 122345566666665


Q ss_pred             CccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          340 GFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       340 ~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ++ .++.  +..-+..+|+|+.|++++|++
T Consensus       228 ~N-~L~~--lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         228 NN-KLVK--VPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             SS-CCSS--CCTTTTTCSSCCEEECCSSCC
T ss_pred             cc-cccc--cccccccccCCCEEECCCCcc
Confidence            55 2221  111123556666666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=7.5e-10  Score=96.35  Aligned_cols=78  Identities=19%  Similarity=0.273  Sum_probs=32.5

Q ss_pred             hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCcc
Q 046380          256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIK  334 (434)
Q Consensus       256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk  334 (434)
                      +..+++++.+.+..+.+...+.   ...+++|+.+.++++.--....+ .+++|++|+++++..+  .+. ....+++|+
T Consensus       130 l~~l~~l~~l~~~~n~l~~~~~---~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~--~l~-~l~~l~~L~  203 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--DLR-ALAGLKNLD  203 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC--BCG-GGTTCTTCS
T ss_pred             cccccccccccccccccccccc---ccccccccccccccccccccccccCCCCCCEEECCCCCCC--CCh-hhcCCCCCC
Confidence            3445555555555554443321   22344445444444321111122 3455555555544322  111 233445555


Q ss_pred             EEEEc
Q 046380          335 TLAVN  339 (434)
Q Consensus       335 ~L~l~  339 (434)
                      .|+++
T Consensus       204 ~L~Ls  208 (210)
T d1h6ta2         204 VLELF  208 (210)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            55554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.90  E-value=1.8e-09  Score=92.99  Aligned_cols=18  Identities=28%  Similarity=0.464  Sum_probs=8.7

Q ss_pred             ccCCCCcEEEeecccccc
Q 046380          257 SKFSNLETLKLLSSVFGK  274 (434)
Q Consensus       257 ~~~~~L~~L~l~~~~~~~  274 (434)
                      ..+++|+.|+++++.+..
T Consensus       125 ~~l~~L~~L~l~~n~l~~  142 (199)
T d2omxa2         125 KNLTNLNRLELSSNTISD  142 (199)
T ss_dssp             TTCTTCSEEECCSSCCCC
T ss_pred             chhhhhHHhhhhhhhhcc
Confidence            344555555555544433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=5.6e-09  Score=91.70  Aligned_cols=162  Identities=15%  Similarity=0.170  Sum_probs=93.8

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      .++++|.+..+.        ...++ .+....+ |++|++++|.+ +.          .....+++|+++++.+      
T Consensus        41 ~~L~~L~l~~~~--------i~~l~-~l~~l~~-L~~L~ls~n~i~~~----------~~l~~l~~l~~l~~~~------   94 (227)
T d1h6ua2          41 DGITTLSAFGTG--------VTTIE-GVQYLNN-LIGLELKDNQITDL----------APLKNLTKITELELSG------   94 (227)
T ss_dssp             HTCCEEECTTSC--------CCCCT-TGGGCTT-CCEEECCSSCCCCC----------GGGTTCCSCCEEECCS------
T ss_pred             CCcCEEECCCCC--------CCcch-hHhcCCC-CcEeecCCceeecc----------cccccccccccccccc------
Confidence            588999887665        33443 3444555 99999999988 43          4578999999999998      


Q ss_pred             EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                      ..+..+. -++.+++|+.+.+.++.......          ....+.++.+.++++......   .+..+++|+.|++.+
T Consensus        95 n~~~~i~-~l~~l~~L~~l~l~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~  160 (227)
T d1h6ua2          95 NPLKNVS-AIAGLQSIKTLDLTSTQITDVTP----------LAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGN  160 (227)
T ss_dssp             CCCSCCG-GGTTCTTCCEEECTTSCCCCCGG----------GTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCS
T ss_pred             ccccccc-cccccccccccccccccccccch----------hccccchhhhhchhhhhchhh---hhccccccccccccc
Confidence            4441222 25679999999999887643211          223455566655443322211   235566666666666


Q ss_pred             cccccCCCCcchhhccCccEEEeecCCCCccee-e-cCCcccEEEeccc
Q 046380          270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPVE-I-HSPNLETFVYKAG  316 (434)
Q Consensus       270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~-~-~~p~L~~L~l~~~  316 (434)
                      +.+...+.   ...+++|+.|+++++. +..+. + .+++|++|+++++
T Consensus       161 n~~~~~~~---l~~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         161 AQVSDLTP---LANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNN  205 (227)
T ss_dssp             SCCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTS
T ss_pred             cccccchh---hcccccceecccCCCc-cCCChhhcCCCCCCEEECcCC
Confidence            65543321   1234555555555542 22111 2 3445555554444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.85  E-value=3.3e-09  Score=92.14  Aligned_cols=161  Identities=14%  Similarity=0.101  Sum_probs=112.9

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      ..+++|++..+.        ...++ .+-.+.+ |++|++++|.+ +.          +....+++|++|++++      
T Consensus        46 ~~L~~L~l~~~~--------i~~l~-~l~~l~~-L~~L~L~~n~i~~l----------~~~~~l~~L~~L~l~~------   99 (210)
T d1h6ta2          46 NSIDQIIANNSD--------IKSVQ-GIQYLPN-VTKLFLNGNKLTDI----------KPLANLKNLGWLFLDE------   99 (210)
T ss_dssp             HTCCEEECTTSC--------CCCCT-TGGGCTT-CCEEECCSSCCCCC----------GGGTTCTTCCEEECCS------
T ss_pred             cCccEEECcCCC--------CCCch-hHhhCCC-CCEEeCCCccccCc----------cccccCcccccccccc------
Confidence            367888776554        22232 2333455 99999999987 44          4457889999999998      


Q ss_pred             EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                      +.+..+. .+..+++|+.|.+.++......          ....+++++.+.+++....+..   ....+++|+.+++++
T Consensus       100 n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~----------~l~~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~  165 (210)
T d1h6ta2         100 NKVKDLS-SLKDLKKLKSLSLEHNGISDIN----------GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLED  165 (210)
T ss_dssp             SCCCCGG-GGTTCTTCCEEECTTSCCCCCG----------GGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCS
T ss_pred             ccccccc-cccccccccccccccccccccc----------cccccccccccccccccccccc---ccccccccccccccc
Confidence            5442233 2677899999999988764321          1345778888888776555432   456789999999999


Q ss_pred             cccccCCCCcchhhccCccEEEeecCCCCccee-e-cCCcccEEEecc
Q 046380          270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGPVE-I-HSPNLETFVYKA  315 (434)
Q Consensus       270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~-~-~~p~L~~L~l~~  315 (434)
                      +.+..++.   ...+++|++|+++++. ++.+. + .+++|+.|++++
T Consensus       166 n~l~~i~~---l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         166 NQISDIVP---LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCCCGG---GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEE
T ss_pred             cccccccc---ccCCCCCCEEECCCCC-CCCChhhcCCCCCCEEEccC
Confidence            98877653   3457899999999874 44333 4 689999999865

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=6.4e-09  Score=89.43  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=56.6

Q ss_pred             hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCcc
Q 046380          256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIK  334 (434)
Q Consensus       256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk  334 (434)
                      +..+++|+.|+++++.+..++.   ...+++|+.|.++++.......+ .+++|+.|.++++...  .+ .....+++|+
T Consensus        80 l~~l~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~-~~l~~~~~L~  153 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS--DI-SALSGLTSLQ  153 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC--CC-GGGTTCTTCS
T ss_pred             ccCCcccccccccccccccccc---cccccccccccccccccccccccchhhhhHHhhhhhhhhc--cc-cccccccccc
Confidence            4455666666666665554442   23455666666665544333333 4666777776665422  11 1244566777


Q ss_pred             EEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          335 TLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       335 ~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      .|.+.++ .+++-  .. +.++++|+.|++++|++
T Consensus       154 ~L~l~~n-~l~~l--~~-l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         154 QLNFSSN-QVTDL--KP-LANLTTLERLDISSNKV  184 (199)
T ss_dssp             EEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCC
T ss_pred             ccccccc-cccCC--cc-ccCCCCCCEEECCCCCC
Confidence            7777666 22221  11 24667777777777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.2e-09  Score=98.71  Aligned_cols=181  Identities=17%  Similarity=0.106  Sum_probs=120.5

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFD  209 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~  209 (434)
                      ...+|..+.  .+ |++|+|+++.+..        +++ .+.++++|++|+|++      ..+..+.. .+.+++|+.|+
T Consensus        22 L~~iP~~lp--~~-l~~L~Ls~N~i~~--------l~~~~f~~l~~L~~L~L~~------N~l~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_          22 LTALPPDLP--KD-TTILHLSENLLYT--------FSLATLMPYTRLTQLNLDR------AELTKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             CSSCCSCCC--TT-CCEEECTTSCCSE--------EEGGGGTTCTTCCEEECTT------SCCCEEEC-CSCCTTCCEEE
T ss_pred             CCeeCcCcC--cC-CCEEECcCCcCCC--------cCHHHhhcccccccccccc------cccccccc-ccccccccccc
Confidence            455666553  23 8999999987722        222 356889999999988      43311111 25688999999


Q ss_pred             eccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccE
Q 046380          210 EAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKL  289 (434)
Q Consensus       210 l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~  289 (434)
                      +++|....         .......+++|+.|++++....... ......+++++.|.+.++.+..+|... ...+++|+.
T Consensus        84 Ls~N~l~~---------~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~l~~L~l~~n~l~~l~~~~-~~~l~~l~~  152 (266)
T d1p9ag_          84 LSHNQLQS---------LPLLGQTLPALTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNELKTLPPGL-LTPTPKLEK  152 (266)
T ss_dssp             CCSSCCSS---------CCCCTTTCTTCCEEECCSSCCCCCC-SSTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCE
T ss_pred             cccccccc---------cccccccccccccccccccccceee-ccccccccccccccccccccceecccc-ccccccchh
Confidence            99887632         2333456788999988765433211 113467889999999999888876532 334678888


Q ss_pred             EEeecCCCCc--ceee-cCCcccEEEeccccCcccceeecCCCCCCccEEEEcCcc
Q 046380          290 VRMENCRFDG--PVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFL  342 (434)
Q Consensus       290 L~l~~c~~l~--~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~  342 (434)
                      |+++++.--.  .-.+ .+++|++|+++++..+  .+.......++|+.|.++++.
T Consensus       153 l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~--~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccccccccCccccccccccceeecccCCCc--ccChhHCCCCCCCEEEecCCC
Confidence            8888864221  1123 5788999999887643  444445567888999998764

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=4.2e-10  Score=85.54  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=36.9

Q ss_pred             CCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhcccc
Q 046380            4 IDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHWLC   43 (434)
Q Consensus         4 ~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw~~   43 (434)
                      .|.|+.||+||+.+||+||+++|++++++|||+|+++...
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            5999999999999999999999999999999999876543

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.5e-09  Score=82.73  Aligned_cols=39  Identities=28%  Similarity=0.422  Sum_probs=36.4

Q ss_pred             CCCCCCCCCHHHHHHHHcCCChHHHHHHhhhhhhhhhcc
Q 046380            3 AIDRISFLPDDLTHHIMSLLPMKDIARTSILSKRWMSHW   41 (434)
Q Consensus         3 ~~D~is~LPdeiL~~I~s~L~~~~~~r~~~vskrW~~lw   41 (434)
                      -.|.|+.||+||+.+||+||+++|+++++.|||+|+.+.
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            369999999999999999999999999999999999753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.8e-09  Score=95.50  Aligned_cols=208  Identities=15%  Similarity=0.098  Sum_probs=123.0

Q ss_pred             ccccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..+.  .+ +++|+|+++.+..        +++ .+.++++|++|++++      ..+ ........+++.++++
T Consensus        23 L~~iP~~ip--~~-~~~L~Ls~N~i~~--------i~~~~f~~l~~L~~L~ls~------n~l~~i~~~~~~~~~~~~~l   85 (284)
T d1ozna_          23 LQAVPVGIP--AA-SQRIFLHGNRISH--------VPAASFRACRNLTILWLHS------NVLARIDAAAFTGLALLEQL   85 (284)
T ss_dssp             CSSCCTTCC--TT-CSEEECTTSCCCE--------ECTTTTTTCTTCCEEECCS------SCCCEECTTTTTTCTTCCEE
T ss_pred             CCccCCCCC--CC-CCEEECcCCcCCC--------CCHHHhhcccccccccccc------cccccccccccccccccccc
Confidence            345555443  23 7888888887722        222 356788888888887      444 2222334556777777


Q ss_pred             eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380          209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK  288 (434)
Q Consensus       209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~  288 (434)
                      ...........       .......+++|+.|++++....... .......++|+.+++.++.++.+|... ...+++|+
T Consensus        86 ~~~~~~~~~~l-------~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~N~l~~i~~~~-f~~~~~L~  156 (284)
T d1ozna_          86 DLSDNAQLRSV-------DPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNLT  156 (284)
T ss_dssp             ECCSCTTCCCC-------CTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCC
T ss_pred             ccccccccccc-------cchhhcccccCCEEecCCccccccc-ccccchhcccchhhhccccccccChhH-hccccchh
Confidence            66544332110       0111234577888877654432211 113466788888888888887776422 23456788


Q ss_pred             EEEeecCCCCcce---ee-cCCcccEEEeccccCcccce-eecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEE
Q 046380          289 LVRMENCRFDGPV---EI-HSPNLETFVYKAGHGEIASF-HFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLY  363 (434)
Q Consensus       289 ~L~l~~c~~l~~~---~~-~~p~L~~L~l~~~~~~~~~~-~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~  363 (434)
                      +|++.++. +..+   .+ .+++|+.+.+..+...  +. ...+..+++|++|+++++ .+... ....+..+++|+.|+
T Consensus       157 ~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~l~--~i~~~~f~~l~~L~~L~l~~N-~i~~~-~~~~~~~~~~L~~L~  231 (284)
T d1ozna_         157 HLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFAN-NLSAL-PTEALAPLRALQYLR  231 (284)
T ss_dssp             EEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSS-CCSCC-CHHHHTTCTTCCEEE
T ss_pred             hcccccCc-ccccchhhhccccccchhhhhhcccc--ccChhHhhhhhhccccccccc-ccccc-cccccccccccCEEE
Confidence            88887763 2222   22 5788888888776533  21 123566778888888877 33221 223446788888888


Q ss_pred             eecccc
Q 046380          364 LNSCAI  369 (434)
Q Consensus       364 l~~~~~  369 (434)
                      +++++.
T Consensus       232 l~~N~l  237 (284)
T d1ozna_         232 LNDNPW  237 (284)
T ss_dssp             CCSSCE
T ss_pred             ecCCCC
Confidence            888765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.74  E-value=3.9e-09  Score=98.83  Aligned_cols=38  Identities=3%  Similarity=-0.193  Sum_probs=22.5

Q ss_pred             cCcccceEEEeeecccceEee-C----hHHHHHhcCCCcceeeeccccC
Q 046380          172 FNPSVRRLVVRGCMALQGFEM-D----APRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       172 ~~~~L~~L~L~~c~~~~~~~~-~----~l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      .+++|++|+|++      +.+ +    .+...+..+++|++|.+.+|..
T Consensus        91 ~~~~L~~L~L~~------n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          91 KCPKLHTVRLSD------NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TCTTCCEEECCS------CCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             hCCCcccccccc------cccccccccchhhhhcccccchheecccccc
Confidence            456677777766      444 2    3444455667777777766643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.3e-09  Score=95.18  Aligned_cols=200  Identities=13%  Similarity=0.045  Sum_probs=136.1

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      .++++|+++...        ...+|...|....+|++|+++++.+ ...        +.....++.++++....+...+ 
T Consensus        32 ~~~~~L~Ls~N~--------i~~i~~~~f~~l~~L~~L~ls~n~l~~i~--------~~~~~~~~~~~~l~~~~~~~~~-   94 (284)
T d1ozna_          32 AASQRIFLHGNR--------ISHVPAASFRACRNLTILWLHSNVLARID--------AAAFTGLALLEQLDLSDNAQLR-   94 (284)
T ss_dssp             TTCSEEECTTSC--------CCEECTTTTTTCTTCCEEECCSSCCCEEC--------TTTTTTCTTCCEEECCSCTTCC-
T ss_pred             CCCCEEECcCCc--------CCCCCHHHhhccccccccccccccccccc--------cccccccccccccccccccccc-
Confidence            578999987655        6678877666544599999999877 220        1344567888888876521111 


Q ss_pred             EeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeec
Q 046380          190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLS  269 (434)
Q Consensus       190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  269 (434)
                         +.-...+.++++|++|.+.++......        .......++|+.+++++....... ...+..+++|+.|++++
T Consensus        95 ---~l~~~~~~~l~~L~~L~l~~n~~~~~~--------~~~~~~~~~L~~l~l~~N~l~~i~-~~~f~~~~~L~~L~l~~  162 (284)
T d1ozna_          95 ---SVDPATFHGLGRLHTLHLDRCGLQELG--------PGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHG  162 (284)
T ss_dssp             ---CCCTTTTTTCTTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCS
T ss_pred             ---cccchhhcccccCCEEecCCccccccc--------ccccchhcccchhhhccccccccC-hhHhccccchhhccccc
Confidence               111334678999999999998864321        122345678899988776544321 12467889999999999


Q ss_pred             cccccCCCCcchhhccCccEEEeecCCCCcc--eee-cCCcccEEEeccccCccccee-ecCCCCCCccEEEEcCcc
Q 046380          270 SVFGKLPSSLSSAILKKLKLVRMENCRFDGP--VEI-HSPNLETFVYKAGHGEIASFH-FGGRGFGNIKTLAVNGFL  342 (434)
Q Consensus       270 ~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~--~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~Lk~L~l~~~~  342 (434)
                      +.+..+|... ...+++|+.+.+.++.-...  -.+ .+++|++|+++.+...  +.. ..+..+++|++|.++++.
T Consensus       163 N~l~~l~~~~-f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         163 NRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS--ALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCHHHHTTCTTCCEEECCSSC
T ss_pred             Ccccccchhh-hccccccchhhhhhccccccChhHhhhhhhcccccccccccc--cccccccccccccCEEEecCCC
Confidence            9988776432 24577899999988653322  234 5899999999987643  221 234678999999999863

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.1e-08  Score=90.21  Aligned_cols=147  Identities=14%  Similarity=0.089  Sum_probs=76.2

Q ss_pred             cccceEEEeeecccceEee-ChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhH
Q 046380          174 PSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTF  252 (434)
Q Consensus       174 ~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~  252 (434)
                      ++|++|+|++      ..+ .-....+.++++|++|.+++|....         +.. ...+++|+.|++++......  
T Consensus        31 ~~l~~L~Ls~------N~i~~l~~~~f~~l~~L~~L~L~~N~l~~---------l~~-~~~l~~L~~L~Ls~N~l~~~--   92 (266)
T d1p9ag_          31 KDTTILHLSE------NLLYTFSLATLMPYTRLTQLNLDRAELTK---------LQV-DGTLPVLGTLDLSHNQLQSL--   92 (266)
T ss_dssp             TTCCEEECTT------SCCSEEEGGGGTTCTTCCEEECTTSCCCE---------EEC-CSCCTTCCEEECCSSCCSSC--
T ss_pred             cCCCEEECcC------CcCCCcCHHHhhccccccccccccccccc---------ccc-cccccccccccccccccccc--
Confidence            5799999998      555 2223456789999999999987621         111 12456666666655433321  


Q ss_pred             HHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCC--Ccceee-cCCcccEEEeccccCccccee-ecCC
Q 046380          253 ESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRF--DGPVEI-HSPNLETFVYKAGHGEIASFH-FGGR  328 (434)
Q Consensus       253 ~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~--l~~~~~-~~p~L~~L~l~~~~~~~~~~~-~~~~  328 (434)
                      ...+..+++|+.|+++++.+..++.. ....+.+++.|.+.++..  +..-.+ ..++++.+.++++...  .+. ..+.
T Consensus        93 ~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~--~~~~~~~~  169 (266)
T d1p9ag_          93 PLLGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT--ELPAGLLN  169 (266)
T ss_dssp             CCCTTTCTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS--CCCTTTTT
T ss_pred             ccccccccccccccccccccceeecc-ccccccccccccccccccceeccccccccccchhccccccccc--ccCccccc
Confidence            11245566666666666655544321 122344555555554321  111111 3455555555554322  111 1123


Q ss_pred             CCCCccEEEEcCc
Q 046380          329 GFGNIKTLAVNGF  341 (434)
Q Consensus       329 ~~~~Lk~L~l~~~  341 (434)
                      .+++|++|+++++
T Consensus       170 ~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         170 GLENLDTLLLQEN  182 (266)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cccccceeecccC
Confidence            4455555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.64  E-value=3.8e-08  Score=91.55  Aligned_cols=136  Identities=17%  Similarity=0.081  Sum_probs=83.1

Q ss_pred             hcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccc
Q 046380          109 LRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQ  188 (434)
Q Consensus       109 ~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~  188 (434)
                      ...++++|+++...        ...+|..+   .+ |++|+++++.+..        + |  ..+.+|++|++.+     
T Consensus        36 ~~~~l~~LdLs~~~--------L~~lp~~~---~~-L~~L~Ls~N~l~~--------l-p--~~~~~L~~L~l~~-----   87 (353)
T d1jl5a_          36 LDRQAHELELNNLG--------LSSLPELP---PH-LESLVASCNSLTE--------L-P--ELPQSLKSLLVDN-----   87 (353)
T ss_dssp             HHHTCSEEECTTSC--------CSCCCSCC---TT-CSEEECCSSCCSS--------C-C--CCCTTCCEEECCS-----
T ss_pred             HHcCCCEEEeCCCC--------CCCCCCCC---CC-CCEEECCCCCCcc--------c-c--cchhhhhhhhhhh-----
Confidence            44589999987654        45677532   34 9999999988732        1 2  3457899999998     


Q ss_pred             eEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEee
Q 046380          189 GFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLL  268 (434)
Q Consensus       189 ~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  268 (434)
                       ..+..+..   --+.|++|+++++.....         +. ...+++|+.|++++.....     .....+.+..+.+.
T Consensus        88 -n~l~~l~~---lp~~L~~L~L~~n~l~~l---------p~-~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~l~~~  148 (353)
T d1jl5a_          88 -NNLKALSD---LPPLLEYLGVSNNQLEKL---------PE-LQNSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAG  148 (353)
T ss_dssp             -SCCSCCCS---CCTTCCEEECCSSCCSSC---------CC-CTTCTTCCEEECCSSCCSC-----CCCCCTTCCEEECC
T ss_pred             -cccchhhh---hccccccccccccccccc---------cc-hhhhccceeeccccccccc-----cccccccccchhhc
Confidence             43311211   125799999998876322         22 2457889999887654332     22345677777776


Q ss_pred             ccccccCCCCcchhhccCccEEEeec
Q 046380          269 SSVFGKLPSSLSSAILKKLKLVRMEN  294 (434)
Q Consensus       269 ~~~~~~~p~~~~~~~~~~L~~L~l~~  294 (434)
                      .+.......   ...++.++.|.+..
T Consensus       149 ~~~~~~~~~---l~~l~~l~~L~l~~  171 (353)
T d1jl5a_         149 NNQLEELPE---LQNLPFLTAIYADN  171 (353)
T ss_dssp             SSCCSSCCC---CTTCTTCCEEECCS
T ss_pred             ccccccccc---ccccccceeccccc
Confidence            554333211   12355666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.62  E-value=1.1e-08  Score=94.36  Aligned_cols=221  Identities=16%  Similarity=0.099  Sum_probs=137.6

Q ss_pred             eeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCccccc
Q 046380          145 LVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRF  223 (434)
Q Consensus       145 L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~  223 (434)
                      ++.|+|+++.+ ..      ..+|+....+++|++|+|++|..+.    +.+..-++++++|++|++++|.....     
T Consensus        52 v~~L~L~~~~l~g~------~~lp~~l~~L~~L~~L~Ls~~N~l~----g~iP~~i~~L~~L~~L~Ls~N~l~~~-----  116 (313)
T d1ogqa_          52 VNNLDLSGLNLPKP------YPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGA-----  116 (313)
T ss_dssp             EEEEEEECCCCSSC------EECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEE-----
T ss_pred             EEEEECCCCCCCCC------CCCChHHhcCccccccccccccccc----cccccccccccccchhhhcccccccc-----
Confidence            99999999877 21      1246788899999999999742222    35555678899999999999976321     


Q ss_pred             ccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccc-cCCCCcchhhccCc-cEEEeecCCCCc--
Q 046380          224 LEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFG-KLPSSLSSAILKKL-KLVRMENCRFDG--  299 (434)
Q Consensus       224 l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L-~~L~l~~c~~l~--  299 (434)
                         ........++|+.+.++....... ....+..+++++.++++++.+. .+|..  ...+.++ +.+.++.+.-..  
T Consensus       117 ---~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~l~l~~n~l~~~ip~~--~~~l~~l~~~l~~~~n~l~~~~  190 (313)
T d1ogqa_         117 ---IPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNRLTGKI  190 (313)
T ss_dssp             ---CCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGG--GGCCCTTCCEEECCSSEEEEEC
T ss_pred             ---ccccccchhhhccccccccccccc-CchhhccCcccceeeccccccccccccc--cccccccccccccccccccccc
Confidence               122344678899998876543321 1235678999999999999775 35542  1234444 555555432111  


Q ss_pred             ceeecCCcccEEEeccccCcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccccccccc-c-c
Q 046380          300 PVEIHSPNLETFVYKAGHGEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLE-I-Y  377 (434)
Q Consensus       300 ~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~-~-~  377 (434)
                      ...+.......+.+...... .........+++|+.+.+.++. .... +.. +..+++|+.|++++|++...... + .
T Consensus       191 ~~~~~~l~~~~l~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~-l~~~-~~~-~~~~~~L~~L~Ls~N~l~g~iP~~l~~  266 (313)
T d1ogqa_         191 PPTFANLNLAFVDLSRNMLE-GDASVLFGSDKNTQKIHLAKNS-LAFD-LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             CGGGGGCCCSEEECCSSEEE-ECCGGGCCTTSCCSEEECCSSE-ECCB-GGG-CCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cccccccccccccccccccc-cccccccccccccccccccccc-cccc-ccc-cccccccccccCccCeecccCChHHhC
Confidence            11122223334554443211 1122344567899999998873 2221 112 34689999999999998422111 1 2


Q ss_pred             ccccceeEeccCC
Q 046380          378 SLTLKTLVVHGCD  390 (434)
Q Consensus       378 ~~~L~~L~l~~c~  390 (434)
                      .++|+.|+++++.
T Consensus       267 L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         267 LKFLHSLNVSFNN  279 (313)
T ss_dssp             CTTCCEEECCSSE
T ss_pred             CCCCCEEECcCCc
Confidence            3689999999983

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.53  E-value=1.2e-07  Score=86.85  Aligned_cols=227  Identities=11%  Similarity=0.001  Sum_probs=130.2

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccc-cccccCcccceEEEeeecccce
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQG  189 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~  189 (434)
                      ++++.|+++.+.        ...+|...|....+|++|+++++.+..        ++ ..+..+++|++|++++      
T Consensus        31 ~~l~~L~Ls~N~--------i~~l~~~~f~~l~~L~~L~l~~n~~~~--------i~~~~f~~l~~L~~L~l~~------   88 (305)
T d1xkua_          31 PDTALLDLQNNK--------ITEIKDGDFKNLKNLHTLILINNKISK--------ISPGAFAPLVKLERLYLSK------   88 (305)
T ss_dssp             TTCCEEECCSSC--------CCCBCTTTTTTCTTCCEEECCSSCCCC--------BCTTTTTTCTTCCEEECCS------
T ss_pred             CCCCEEECcCCc--------CCCcChhHhhccccccccccccccccc--------cchhhhhCCCccCEecccC------
Confidence            467777776554        566666545433337777777776621        11 2345677777777776      


Q ss_pred             EeeChHHHHHhcCCCcceeeeccccCCCCcc-----c---c----------cccccceeeccCCceeEEEEEeEEeCchh
Q 046380          190 FEMDAPRLNYFQCSGIRDFDEAFVYRPDHFC-----C---R----------FLEFKVANENSMSSLETLVFSFMVLNDRT  251 (434)
Q Consensus       190 ~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~-----~---~----------~l~~~~~~~~~~p~L~~L~l~~~~~~~~~  251 (434)
                      ..+..+.  ...++.|+.|.+.++.......     +   .          ...........+++|+.+.++++......
T Consensus        89 n~l~~l~--~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~  166 (305)
T d1xkua_          89 NQLKELP--EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  166 (305)
T ss_dssp             SCCSBCC--SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CccCcCc--cchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC
Confidence            3221111  0123455555555544332110     0   0          00011122334678888888765443211


Q ss_pred             HHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCc--ceee-cCCcccEEEeccccCcccceeecCC
Q 046380          252 FESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDG--PVEI-HSPNLETFVYKAGHGEIASFHFGGR  328 (434)
Q Consensus       252 ~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~--~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~  328 (434)
                          ....++|+.|++.++.....+.. ....+++++.|.++++.-..  ...+ .+++|++|+++++..+  .+...+.
T Consensus       167 ----~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~--~lp~~l~  239 (305)
T d1xkua_         167 ----QGLPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLA  239 (305)
T ss_dssp             ----SSCCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTT
T ss_pred             ----cccCCccCEEECCCCcCCCCChh-Hhhccccccccccccccccccccccccccccceeeeccccccc--ccccccc
Confidence                23468999999998876554321 13446788899988763222  1223 5899999999987643  4444567


Q ss_pred             CCCCccEEEEcCccCCcH---HHH--HHHHhcCCccceEEeecccc
Q 046380          329 GFGNIKTLAVNGFLGLRN---KSL--EELISACILLENLYLNSCAI  369 (434)
Q Consensus       329 ~~~~Lk~L~l~~~~~~~~---~~l--~~l~~~~p~Le~L~l~~~~~  369 (434)
                      .+++|++|+++++ .++.   ..+  .......++|+.|+|+++++
T Consensus       240 ~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         240 DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            7899999999987 3322   111  11223457788888888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.8e-08  Score=97.09  Aligned_cols=107  Identities=17%  Similarity=0.153  Sum_probs=59.6

Q ss_pred             cCccEEEeecCCCCcc----e---eecCCcccEEEeccccCccccee---ec-CCCCCCccEEEEcCccCCcHHHHHHH-
Q 046380          285 KKLKLVRMENCRFDGP----V---EIHSPNLETFVYKAGHGEIASFH---FG-GRGFGNIKTLAVNGFLGLRNKSLEEL-  352 (434)
Q Consensus       285 ~~L~~L~l~~c~~l~~----~---~~~~p~L~~L~l~~~~~~~~~~~---~~-~~~~~~Lk~L~l~~~~~~~~~~l~~l-  352 (434)
                      ..|+.+.++.|..-..    +   ...+++|++|+++++.....++.   .. ....+.|++|.++++ .++++++..+ 
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~  390 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA  390 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHH
Confidence            3566666666532111    1   01366777777777654432221   11 123456788888877 6777654443 


Q ss_pred             --HhcCCccceEEeecccccccc-------ccccccccceeEeccCCcc
Q 046380          353 --ISACILLENLYLNSCAIPKGH-------LEIYSLTLKTLVVHGCDHL  392 (434)
Q Consensus       353 --~~~~p~Le~L~l~~~~~~~~~-------~~~~~~~L~~L~l~~c~~l  392 (434)
                        +..+++|++|+|+++.+....       +......|+.|.+.++..-
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence              456778888888877763311       1112235777777776544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=2.9e-08  Score=78.24  Aligned_cols=92  Identities=11%  Similarity=-0.042  Sum_probs=44.7

Q ss_pred             ccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeC
Q 046380          169 SNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLN  248 (434)
Q Consensus       169 ~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~  248 (434)
                      ....+++|++|++++      ..+..+...+..+++|+.|+++++...+.         +. ...+|+|+.|++++....
T Consensus        15 ~l~~l~~L~~L~ls~------N~l~~lp~~~~~l~~L~~L~l~~N~i~~l---------~~-~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3          15 HLEQLLLVTHLDLSH------NRLRALPPALAALRCLEVLQASDNALENV---------DG-VANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             CGGGGTTCCEEECCS------SCCCCCCGGGGGCTTCCEEECCSSCCCCC---------GG-GTTCSSCCEEECCSSCCC
T ss_pred             ccccCCCCCEEECCC------CccCcchhhhhhhhccccccccccccccc---------Cc-cccccccCeEECCCCccC
Confidence            345566666666665      33312222244566666666666555221         10 123444444444443333


Q ss_pred             chhHHHHhccCCCCcEEEeeccccccCC
Q 046380          249 DRTFESALSKFSNLETLKLLSSVFGKLP  276 (434)
Q Consensus       249 ~~~~~~~~~~~~~L~~L~l~~~~~~~~p  276 (434)
                      +......+..+++|+.|++++|.+...+
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            2211123456677777777777665443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.9e-07  Score=77.09  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=52.8

Q ss_pred             ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce-e-e-cCCcccEEEeccccCcc-cceeecCCCCCC
Q 046380          257 SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV-E-I-HSPNLETFVYKAGHGEI-ASFHFGGRGFGN  332 (434)
Q Consensus       257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~-~-~-~~p~L~~L~l~~~~~~~-~~~~~~~~~~~~  332 (434)
                      ..+++|+.|++++|.+..++.   ...+++|++|+++++.-.... . + .+|+|+.|.+.++.... ..+ .....+++
T Consensus        38 ~~l~~L~~L~Ls~N~i~~l~~---~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l-~~l~~l~~  113 (162)
T d1a9na_          38 ATLDQFDAIDFSDNEIRKLDG---FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKS  113 (162)
T ss_dssp             GGTTCCSEEECCSSCCCEECC---CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGG-GGGGGCTT
T ss_pred             cccccCCEEECCCCCCCccCC---cccCcchhhhhcccccccCCCccccccccccccceeccccccccccc-cccccccc
Confidence            344555555555554444321   123445555555554321111 1 1 46677777776655321 111 22456778


Q ss_pred             ccEEEEcCccCCcHH--HHHHHHhcCCccceEE
Q 046380          333 IKTLAVNGFLGLRNK--SLEELISACILLENLY  363 (434)
Q Consensus       333 Lk~L~l~~~~~~~~~--~l~~l~~~~p~Le~L~  363 (434)
                      |++|.++++ .++..  .-..++..+|+|+.|+
T Consensus       114 L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         114 LTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSS-GGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cchhhcCCC-ccccccchHHHHHHHCCCcCeeC
Confidence            888888777 33322  2244566788888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.47  E-value=1.1e-08  Score=87.73  Aligned_cols=116  Identities=11%  Similarity=-0.007  Sum_probs=79.7

Q ss_pred             cccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeee
Q 046380          132 YALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDE  210 (434)
Q Consensus       132 ~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l  210 (434)
                      ..++..+....+ |++|+|+++.+ +.          +....+++|++|+|++      +.+..+..+...+++|++|.+
T Consensus        38 ~~l~~sl~~L~~-L~~L~Ls~n~I~~i----------~~l~~l~~L~~L~Ls~------N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          38 EKMDATLSTLKA-CKHLALSTNNIEKI----------SSLSGMENLRILSLGR------NLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CCCHHHHHHTTT-CCEEECSEEEESCC----------CCHHHHTTCCEEECCE------EEECSCSSHHHHHHHCCEEEC
T ss_pred             hhhhhHHhcccc-cceeECcccCCCCc----------ccccCCccccChhhcc------ccccccccccccccccccccc
Confidence            344444444555 99999999888 43          4566888999999988      555223333444678899999


Q ss_pred             ccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeecccccc
Q 046380          211 AFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGK  274 (434)
Q Consensus       211 ~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  274 (434)
                      .+|.....         . ....+++|+.|+++++...+......+..+++|+.|++++|.+..
T Consensus       101 ~~N~i~~l---------~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         101 SYNQIASL---------S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECCCH---------H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccc---------c-cccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            88876322         1 133567888888888777664433467888999999998886654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5e-08  Score=80.72  Aligned_cols=109  Identities=11%  Similarity=-0.005  Sum_probs=52.4

Q ss_pred             eeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccc
Q 046380          145 LVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFL  224 (434)
Q Consensus       145 L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l  224 (434)
                      |+.|+|+++.+..        ++.....+++|++|+|++      +.+..+. -+..+|+|++|.+++|......     
T Consensus        20 lr~L~L~~n~I~~--------i~~~~~~l~~L~~L~Ls~------N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~-----   79 (162)
T d1a9na_          20 DRELDLRGYKIPV--------IENLGATLDQFDAIDFSD------NEIRKLD-GFPLLRRLKTLLVNNNRICRIG-----   79 (162)
T ss_dssp             CEEEECTTSCCCS--------CCCGGGGTTCCSEEECCS------SCCCEEC-CCCCCSSCCEEECCSSCCCEEC-----
T ss_pred             CcEEECCCCCCCc--------cCccccccccCCEEECCC------CCCCccC-CcccCcchhhhhcccccccCCC-----
Confidence            6677777766622        122334566777777776      3331111 1355667777777766652110     


Q ss_pred             cccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCC
Q 046380          225 EFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLP  276 (434)
Q Consensus       225 ~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p  276 (434)
                         ......+|+|+.|+++++...+-.-...+..+++|+.|++.+|.+...|
T Consensus        80 ---~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          80 ---EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             ---SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             ---ccccccccccccceeccccccccccccccccccccchhhcCCCcccccc
Confidence               0111234444444444433332111123445566666666655554444

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.5e-08  Score=77.94  Aligned_cols=38  Identities=29%  Similarity=0.551  Sum_probs=35.0

Q ss_pred             CCCCCCCCC----HHHHHHHHcCCChHHHHHHhhhhhhhhhc
Q 046380            3 AIDRISFLP----DDLTHHIMSLLPMKDIARTSILSKRWMSH   40 (434)
Q Consensus         3 ~~D~is~LP----deiL~~I~s~L~~~~~~r~~~vskrW~~l   40 (434)
                      -.|.|+.||    |||+.+||+||+++|+++++.|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            359999999    59999999999999999999999999864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.44  E-value=7e-08  Score=90.03  Aligned_cols=250  Identities=11%  Similarity=0.039  Sum_probs=153.9

Q ss_pred             ccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceEee-----ChHHHHHhcCCCcce
Q 046380          133 ALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-----DAPRLNYFQCSGIRD  207 (434)
Q Consensus       133 ~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-----~~l~~~~~~cp~L~~  207 (434)
                      .+...+-...+ |+.|+|+++.+..   .++..+.......++|+.|++.+|........     ..+...+..|++|++
T Consensus        22 ~l~~~L~~~~~-l~~L~Ls~n~i~~---~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~   97 (344)
T d2ca6a1          22 SVFAVLLEDDS-VKEIVLSGNTIGT---EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   97 (344)
T ss_dssp             TTSHHHHHCSC-CCEEECTTSEECH---HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHhhCCC-CCEEECcCCcCCH---HHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccc
Confidence            34444444566 9999999998732   12222334556789999999987421110000     023445677999999


Q ss_pred             eeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHH------------HHhccCCCCcEEEeeccccccC
Q 046380          208 FDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFE------------SALSKFSNLETLKLLSSVFGKL  275 (434)
Q Consensus       208 L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~------------~~~~~~~~L~~L~l~~~~~~~~  275 (434)
                      |++++|...+...    ..+.......++|++|.++++...+....            ......+.|+.|.++.+.+..-
T Consensus        98 L~L~~n~i~~~~~----~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1          98 VRLSDNAFGPTAQ----EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             EECCSCCCCTTTH----HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             ccccccccccccc----cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccc
Confidence            9999987643211    11122233578999999987655432111            1124678899999988765432


Q ss_pred             CCCc---chhhccCccEEEeecCCCCc----c-e--ee-cCCcccEEEeccccCcccc---eeecCCCCCCccEEEEcCc
Q 046380          276 PSSL---SSAILKKLKLVRMENCRFDG----P-V--EI-HSPNLETFVYKAGHGEIAS---FHFGGRGFGNIKTLAVNGF  341 (434)
Q Consensus       276 p~~~---~~~~~~~L~~L~l~~c~~l~----~-~--~~-~~p~L~~L~l~~~~~~~~~---~~~~~~~~~~Lk~L~l~~~  341 (434)
                      ....   ....+++|+.|.++.|.--.    . +  .+ .+++|+.|+++++.....+   +......+++|++|.+++|
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            1100   12346789999998874211    0 1  12 5788999999887643222   2234567889999999998


Q ss_pred             cCCcHHHHHHHHh-----cCCccceEEeeccccccccc-------cccccccceeEeccCCc
Q 046380          342 LGLRNKSLEELIS-----ACILLENLYLNSCAIPKGHL-------EIYSLTLKTLVVHGCDH  391 (434)
Q Consensus       342 ~~~~~~~l~~l~~-----~~p~Le~L~l~~~~~~~~~~-------~~~~~~L~~L~l~~c~~  391 (434)
                       .++++++..+..     ..+.|+.|+|++|.+.....       ......|++|+++++..
T Consensus       254 -~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         254 -LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             -CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             -ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence             788876666653     24679999999988743211       11235788898887754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.4e-07  Score=83.07  Aligned_cols=108  Identities=13%  Similarity=0.050  Sum_probs=53.7

Q ss_pred             hccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecC--CCCcceee----c-CCcccEEEeccccCcccceeecCC
Q 046380          256 LSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENC--RFDGPVEI----H-SPNLETFVYKAGHGEIASFHFGGR  328 (434)
Q Consensus       256 ~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c--~~l~~~~~----~-~p~L~~L~l~~~~~~~~~~~~~~~  328 (434)
                      +..+++|+.|++.++.+...+..   ..+.+++.+.....  ..+..+..    . ...++.+.+.++...  .+.....
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~~---~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~--~i~~~~~  173 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPDV---HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--EIHNCAF  173 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCCC---TTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--EECTTTT
T ss_pred             ccccccccccccchhhhcccccc---cccccccccccccccccccccccccccccccccceeeeccccccc--ccccccc
Confidence            45677777777777766655431   12334444443322  22222221    1 245666776665432  2222222


Q ss_pred             CCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeecccc
Q 046380          329 GFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAI  369 (434)
Q Consensus       329 ~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      ...+++++...+...++.- -...++++++|+.|+|+++++
T Consensus       174 ~~~~l~~~~~l~~n~l~~l-~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         174 NGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             TTCCEEEEECTTCTTCCCC-CTTTTTTSCCCSEEECTTSCC
T ss_pred             cchhhhccccccccccccc-cHHHhcCCCCCCEEECCCCcC
Confidence            3345555543332122210 012246789999999988887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1e-07  Score=91.72  Aligned_cols=115  Identities=9%  Similarity=0.019  Sum_probs=70.9

Q ss_pred             ccceEeEEEEecCccchhhHHHHHHHHHhcCCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeeccccc
Q 046380           81 MQELKIITYSQIDDELKHLITRFVAKEILRGKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQK  160 (434)
Q Consensus        81 l~~l~~l~~~~~~~~~~~~v~~wi~~~~~~~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~  160 (434)
                      ++++.   +.+-. .....+..++...   ++++.|++..|.   ........++..+..+.+ |++|+|++|.+..   
T Consensus         4 l~~ld---~~~~~-i~~~~~~~l~~~l---~~l~~L~L~~~~---i~~~~~~~l~~~L~~~~~-L~~LdLs~N~i~~---   69 (460)
T d1z7xw1           4 IQSLD---IQCEE-LSDARWAELLPLL---QQCQVVRLDDCG---LTEARCKDISSALRVNPA-LAELNLRSNELGD---   69 (460)
T ss_dssp             EEEEE---EESCC-CCHHHHHHHHHHH---TTCSEEEEESSC---CCHHHHHHHHHHHHTCTT-CCEEECTTCCCHH---
T ss_pred             CCEEE---eeCCc-CChHHHHHHHHhC---CCCCEEEeCCCC---CCHHHHHHHHHHHhcCCC-CCEEECcCCcCCh---
Confidence            44455   54332 4455556666554   899999999885   001112334444455666 9999999998721   


Q ss_pred             cccccccccc-ccCcccceEEEeeecccceEee-C-h---HHHHHhcCCCcceeeeccccC
Q 046380          161 NTVMGLTLSN-FFNPSVRRLVVRGCMALQGFEM-D-A---PRLNYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       161 ~~~~~l~~~~-~~~~~L~~L~L~~c~~~~~~~~-~-~---l~~~~~~cp~L~~L~l~~~~~  215 (434)
                      .++..+.... ....+|++|+|++      +.+ + .   +...+..+++|++|.+.+|..
T Consensus        70 ~~~~~l~~~l~~~~~~L~~L~L~~------n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          70 VGVHCVLQGLQTPSCKIQKLSLQN------CCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTT------SCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             HHHHHHHHHHhcCCCCCCEEECCC------CCccccccccccchhhccccccccccccccc
Confidence            0001111111 2345799999999      555 3 3   445567899999999999865

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.6e-07  Score=80.39  Aligned_cols=184  Identities=6%  Similarity=-0.036  Sum_probs=75.9

Q ss_pred             cccccccccCCCceeEEEEeeeeeccccccccccccc-ccccCcccceEEEeeecccceEeeChH-HHHHhcCCCcceee
Q 046380          132 YALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTL-SNFFNPSVRRLVVRGCMALQGFEMDAP-RLNYFQCSGIRDFD  209 (434)
Q Consensus       132 ~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~c~~~~~~~~~~l-~~~~~~cp~L~~L~  209 (434)
                      ..+|..++.  + +++|+|+++.+..        +++ .+.++++|++|++++|...     +.+ ...+.+++.++++.
T Consensus        21 ~~iP~~l~~--~-l~~L~Ls~n~i~~--------l~~~~f~~l~~L~~L~ls~n~~~-----~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          21 TEIPSDLPR--N-AIELRFVLTKLRV--------IQKGAFSGFGDLEKIEISQNDVL-----EVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SSCCSCSCS--C-CSEEEEESCCCCE--------ECTTTTTTCTTCCEEEEESCTTC-----CEECSSSEESCTTCCEEE
T ss_pred             CCcCCCCCC--C-CCEEECcCCcCCc--------cChhHhhccchhhhhhhcccccc-----ceeecccccccccccccc
Confidence            344544432  2 6666666665521        122 2345666666666652111     111 11234456666666


Q ss_pred             eccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCccE
Q 046380          210 EAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKL  289 (434)
Q Consensus       210 l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~  289 (434)
                      +..+.....       ........+++|+.+.+.+...........+..++.+..+....+.+..++.....+.-..++.
T Consensus        85 ~~~~n~l~~-------~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~  157 (242)
T d1xwdc1          85 IEKANNLLY-------INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI  157 (242)
T ss_dssp             EECCTTCCE-------ECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred             ccccccccc-------cccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccee
Confidence            554432110       0111223456666666655443322111122333333333333333333332111111224555


Q ss_pred             EEeecCCCCccee---ecCCcccEEEe-ccccCcccceee-cCCCCCCccEEEEcCc
Q 046380          290 VRMENCRFDGPVE---IHSPNLETFVY-KAGHGEIASFHF-GGRGFGNIKTLAVNGF  341 (434)
Q Consensus       290 L~l~~c~~l~~~~---~~~p~L~~L~l-~~~~~~~~~~~~-~~~~~~~Lk~L~l~~~  341 (434)
                      |.+.++ .+..+.   +..+++.++.. .++..+  .+.. .+.++++|+.|+++++
T Consensus       158 L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~l~--~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         158 LWLNKN-GIQEIHNCAFNGTQLDELNLSDNNNLE--ELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             EECCSS-CCCEECTTTTTTCCEEEEECTTCTTCC--CCCTTTTTTSCCCSEEECTTS
T ss_pred             eecccc-cccccccccccchhhhccccccccccc--cccHHHhcCCCCCCEEECCCC
Confidence            555432 222221   23444444442 222221  1211 2355677777777665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=1.3e-06  Score=68.36  Aligned_cols=103  Identities=14%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             ccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceee-cCCcccEEEeccccCcccceeecCCCCCCccE
Q 046380          257 SKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEI-HSPNLETFVYKAGHGEIASFHFGGRGFGNIKT  335 (434)
Q Consensus       257 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~~Lk~  335 (434)
                      ..+++|++|++++|.++.+|..  ...+++|+.|++++..--....+ .+|+|+.|+++++....-........+++|++
T Consensus        17 ~~l~~L~~L~ls~N~l~~lp~~--~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~   94 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL   94 (124)
T ss_dssp             GGGTTCCEEECCSSCCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             ccCCCCCEEECCCCccCcchhh--hhhhhcccccccccccccccCccccccccCeEECCCCccCCCCCchhhcCCCCCCE
Confidence            4455666666666666555532  23455555555555321111122 45556666655544321111112344555666


Q ss_pred             EEEcCccCCcHH--HHHHHHhcCCccceE
Q 046380          336 LAVNGFLGLRNK--SLEELISACILLENL  362 (434)
Q Consensus       336 L~l~~~~~~~~~--~l~~l~~~~p~Le~L  362 (434)
                      |+++++ .++..  ....+.+.+|+|+.|
T Consensus        95 L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          95 LNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             EECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            666554 22211  123344445555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.20  E-value=4.7e-06  Score=76.79  Aligned_cols=251  Identities=15%  Similarity=0.059  Sum_probs=132.3

Q ss_pred             CCCeEEEEEeecCCCCCCCCccccccccccCCCceeEEEEeeeeecccccccccccccccccCcccceEEEeeecccceE
Q 046380          111 GKLQKLDLHVRDHVGNSLCDHYALPRVIFSSGSFLVSLTIRHCKIGAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGF  190 (434)
Q Consensus       111 ~~l~~L~l~~~~~~~~~~~~~~~lp~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~  190 (434)
                      +++++|+++...        ...+|..+   .+ |+.|++.++....        + +  .-.++|++|++++      .
T Consensus        58 ~~L~~L~Ls~N~--------l~~lp~~~---~~-L~~L~l~~n~l~~--------l-~--~lp~~L~~L~L~~------n  108 (353)
T d1jl5a_          58 PHLESLVASCNS--------LTELPELP---QS-LKSLLVDNNNLKA--------L-S--DLPPLLEYLGVSN------N  108 (353)
T ss_dssp             TTCSEEECCSSC--------CSSCCCCC---TT-CCEEECCSSCCSC--------C-C--SCCTTCCEEECCS------S
T ss_pred             CCCCEEECCCCC--------Ccccccch---hh-hhhhhhhhcccch--------h-h--hhccccccccccc------c
Confidence            578888887544        44666532   23 8888888876622        1 1  1124588888887      4


Q ss_pred             eeChHHHHHhcCCCcceeeeccccCCCCcc----cccc-----cc-cceeeccCCceeEEEEEeEEeCc-----------
Q 046380          191 EMDAPRLNYFQCSGIRDFDEAFVYRPDHFC----CRFL-----EF-KVANENSMSSLETLVFSFMVLND-----------  249 (434)
Q Consensus       191 ~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~----~~~l-----~~-~~~~~~~~p~L~~L~l~~~~~~~-----------  249 (434)
                      .+..+.. ...+++|+.|.+.++.......    ...+     .. ........+.++.+.+.+.....           
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l  187 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI  187 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             ccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccc
Confidence            4411221 3567888888887776543221    0000     00 00111234555666554221110           


Q ss_pred             ----hhH--HHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcceeecCCcccEEEecccc------
Q 046380          250 ----RTF--ESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPVEIHSPNLETFVYKAGH------  317 (434)
Q Consensus       250 ----~~~--~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~l~~~~------  317 (434)
                          ...  ......++.|+.+.+..+....+|..     ..++..+.+......... ...+.+....+....      
T Consensus       188 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-----~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~~  261 (353)
T d1jl5a_         188 VAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSE  261 (353)
T ss_dssp             ECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC-----CTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSEESC
T ss_pred             ccccccccccccccccccccccccccccccccccc-----cccccccccccccccccc-ccccccccccccccccccccc
Confidence                000  01235678899999988876665542     445666665543211100 011122222211100      


Q ss_pred             ---------CcccceeecCCCCCCccEEEEcCccCCcHHHHHHHHhcCCccceEEeeccccccccccccccccceeEecc
Q 046380          318 ---------GEIASFHFGGRGFGNIKTLAVNGFLGLRNKSLEELISACILLENLYLNSCAIPKGHLEIYSLTLKTLVVHG  388 (434)
Q Consensus       318 ---------~~~~~~~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~l~~  388 (434)
                               .....+......+++|++|+++++ .+..     +....|+|+.|++++|.+ . .+.....+|++|++++
T Consensus       262 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~L~~N~L-~-~l~~~~~~L~~L~L~~  333 (353)
T d1jl5a_         262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIE-----LPALPPRLERLIASFNHL-A-EVPELPQNLKQLHVEY  333 (353)
T ss_dssp             CCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCC-S-CCCCCCTTCCEEECCS
T ss_pred             ccchhcccccccCccccccccCCCCCEEECCCC-ccCc-----cccccCCCCEEECCCCcC-C-ccccccCCCCEEECcC
Confidence                     000011112234679999999988 3331     223578999999999987 2 3444456899999999


Q ss_pred             CCccceeeEecCceEEEE
Q 046380          389 CDHLHFAEIQAPQLLYFQ  406 (434)
Q Consensus       389 c~~l~~~~i~~~~l~~~~  406 (434)
                      |+ ++.+......+..++
T Consensus       334 N~-L~~lp~~~~~L~~L~  350 (353)
T d1jl5a_         334 NP-LREFPDIPESVEDLR  350 (353)
T ss_dssp             SC-CSSCCCCCTTCCEEE
T ss_pred             Cc-CCCCCccccccCeeE
Confidence            97 665543344555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.08  E-value=4e-07  Score=77.77  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=19.0

Q ss_pred             CCCCCccEEEEcCccCCcH---------HHHHHHHhcCCccceEE
Q 046380          328 RGFGNIKTLAVNGFLGLRN---------KSLEELISACILLENLY  363 (434)
Q Consensus       328 ~~~~~Lk~L~l~~~~~~~~---------~~l~~l~~~~p~Le~L~  363 (434)
                      ..+++|+.|.++++. +..         .....++..+|+|+.|+
T Consensus       137 ~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         137 AALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TTTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cCCCccceeecCCCc-cccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            445666666666541 111         12234456788888775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.61  E-value=1e-05  Score=68.26  Aligned_cols=115  Identities=12%  Similarity=0.052  Sum_probs=69.7

Q ss_pred             ccccccccccCCCceeEEEEeeeee-cccccccccccccccccCcccceEEEeeecccceEee-ChHHHHHhcCCCccee
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCKI-GAYQKNTVMGLTLSNFFNPSVRRLVVRGCMALQGFEM-DAPRLNYFQCSGIRDF  208 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~c~~~~~~~~-~~l~~~~~~cp~L~~L  208 (434)
                      ...+|..++  .. +++|+|+++.+ ..-+       +..+..+++|++|+|++      ..+ ......+...++|++|
T Consensus        20 L~~iP~~lp--~~-l~~L~Ls~N~i~~~~~-------~~~f~~l~~L~~L~L~~------N~i~~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_          20 LKEIPRDIP--LH-TTELLLNDNELGRISS-------DGLFGRLPHLVKLELKR------NQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             CSSCCSCCC--TT-CSEEECCSCCCCSBCC-------SCSGGGCTTCCEEECCS------SCCCCBCTTTTTTCTTCCEE
T ss_pred             cCccCCCCC--CC-CCEEEeCCCCCccccc-------ccccCCCceEeeeeccc------ccccccccccccccccccee
Confidence            455666554  23 88888888877 2200       12345788888888887      444 2334455667888888


Q ss_pred             eeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchhHHHHhccCCCCcEEEeeccccccCCCCcchhhccCcc
Q 046380          209 DEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRTFESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLK  288 (434)
Q Consensus       209 ~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~  288 (434)
                      .++++.....         .                        ...+.++++|+.|++++|.++.+|... ...+++|+
T Consensus        84 ~Ls~N~l~~l---------~------------------------~~~F~~l~~L~~L~L~~N~l~~i~~~~-f~~l~~L~  129 (192)
T d1w8aa_          84 QLGENKIKEI---------S------------------------NKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLT  129 (192)
T ss_dssp             ECCSCCCCEE---------C------------------------SSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCC
T ss_pred             eecccccccc---------C------------------------HHHHhCCCcccccccCCccccccCHHH-hcCCcccc
Confidence            8888765211         0                        013456677777777777776665422 22355677


Q ss_pred             EEEeecC
Q 046380          289 LVRMENC  295 (434)
Q Consensus       289 ~L~l~~c  295 (434)
                      +|.+++.
T Consensus       130 ~l~L~~N  136 (192)
T d1w8aa_         130 SLNLASN  136 (192)
T ss_dssp             EEECTTC
T ss_pred             ccccccc
Confidence            7777653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.55  E-value=1.3e-05  Score=67.61  Aligned_cols=104  Identities=12%  Similarity=0.068  Sum_probs=73.8

Q ss_pred             cccceEEEeeecccceEee-C-hHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEeCchh
Q 046380          174 PSVRRLVVRGCMALQGFEM-D-APRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVLNDRT  251 (434)
Q Consensus       174 ~~L~~L~L~~c~~~~~~~~-~-~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~~~~~  251 (434)
                      +++++|+|++      ..+ . .....+.+.++|++|.++++......                                
T Consensus        29 ~~l~~L~Ls~------N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~--------------------------------   70 (192)
T d1w8aa_          29 LHTTELLLND------NELGRISSDGLFGRLPHLVKLELKRNQLTGIE--------------------------------   70 (192)
T ss_dssp             TTCSEEECCS------CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--------------------------------
T ss_pred             CCCCEEEeCC------CCCcccccccccCCCceEeeeecccccccccc--------------------------------
Confidence            5788999988      554 2 22344567888888888877663210                                


Q ss_pred             HHHHhccCCCCcEEEeeccccccCCCCcchhhccCccEEEeecCCCCcce---ee-cCCcccEEEeccccC
Q 046380          252 FESALSKFSNLETLKLLSSVFGKLPSSLSSAILKKLKLVRMENCRFDGPV---EI-HSPNLETFVYKAGHG  318 (434)
Q Consensus       252 ~~~~~~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~~---~~-~~p~L~~L~l~~~~~  318 (434)
                       ...+..+++|+.|++++|.+..+|... ...+++|++|++++.. +..+   .+ ..++|+++.++++..
T Consensus        71 -~~~~~~~~~L~~L~Ls~N~l~~l~~~~-F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          71 -PNAFEGASHIQELQLGENKIKEISNKM-FLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             -TTTTTTCTTCCEEECCSCCCCEECSSS-STTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             -ccccccccccceeeeccccccccCHHH-HhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccc
Confidence             114567899999999999998887532 3568899999999864 3332   23 589999999988653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.82  E-value=0.00034  Score=57.13  Aligned_cols=65  Identities=12%  Similarity=0.007  Sum_probs=37.9

Q ss_pred             CCcccEEEeccccCcccc---eeecCCCCCCccEEEEcCcc--CCcHHH---HHHHHhcCCccceEEeecccc
Q 046380          305 SPNLETFVYKAGHGEIAS---FHFGGRGFGNIKTLAVNGFL--GLRNKS---LEELISACILLENLYLNSCAI  369 (434)
Q Consensus       305 ~p~L~~L~l~~~~~~~~~---~~~~~~~~~~Lk~L~l~~~~--~~~~~~---l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      .+.|++|+++++.....+   +.......++|++|++.++.  .++.++   +...++..++|++|+++.+..
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            344455555444433222   22245566778888887653  244443   555566789999998877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0018  Score=52.00  Aligned_cols=74  Identities=12%  Similarity=-0.053  Sum_probs=43.7

Q ss_pred             cccccCcccceEEEeeecccceEeeChHHHHHhcCCCcceeeeccccCCCCcccccccccceeeccCCceeEEEEEeEEe
Q 046380          168 LSNFFNPSVRRLVVRGCMALQGFEMDAPRLNYFQCSGIRDFDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFMVL  247 (434)
Q Consensus       168 ~~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~cp~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~~~  247 (434)
                      .....+++|++|++.++..++.    --...+.+.++|+.|.++++.....                             
T Consensus        25 ~~l~~l~~l~~L~l~~n~~l~~----i~~~~f~~l~~L~~L~Ls~N~l~~i-----------------------------   71 (156)
T d2ifga3          25 HHLPGAENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRFV-----------------------------   71 (156)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCE----ECGGGSCSCCCCSEEECCSSCCCEE-----------------------------
T ss_pred             ccccCccccCeeecCCCccccc----cCchhhccccccCcceeeccccCCc-----------------------------
Confidence            3445667778887765211111    1122345677777777777655110                             


Q ss_pred             CchhHHHHhccCCCCcEEEeeccccccCCCC
Q 046380          248 NDRTFESALSKFSNLETLKLLSSVFGKLPSS  278 (434)
Q Consensus       248 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~p~~  278 (434)
                      .    ...+..+++|++|++++|.++.+|.+
T Consensus        72 ~----~~~f~~l~~L~~L~Ls~N~l~~l~~~   98 (156)
T d2ifga3          72 A----PDAFHFTPRLSRLNLSFNALESLSWK   98 (156)
T ss_dssp             C----TTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred             c----cccccccccccceeccCCCCcccChh
Confidence            0    11456778888888888888877753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0011  Score=53.31  Aligned_cols=91  Identities=13%  Similarity=-0.006  Sum_probs=58.1

Q ss_pred             ccccccccccCCCceeEEEEeeee-ecccccccccccc-cccccCcccceEEEeeecccceEeeChH-HHHHhcCCCcce
Q 046380          131 HYALPRVIFSSGSFLVSLTIRHCK-IGAYQKNTVMGLT-LSNFFNPSVRRLVVRGCMALQGFEMDAP-RLNYFQCSGIRD  207 (434)
Q Consensus       131 ~~~lp~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~c~~~~~~~~~~l-~~~~~~cp~L~~  207 (434)
                      ....|..+....+ |++|++.++. +..        ++ ..+.++++|+.|+|++      ..+..+ ...+.+.++|++
T Consensus        20 ~~~~p~~l~~l~~-l~~L~l~~n~~l~~--------i~~~~f~~l~~L~~L~Ls~------N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3          20 ALDSLHHLPGAEN-LTELYIENQQHLQH--------LELRDLRGLGELRNLTIVK------SGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCTTTTTSCSCSC-CSEEECCSCSSCCE--------ECGGGSCSCCCCSEEECCS------SCCCEECTTGGGSCSCCCE
T ss_pred             CccCcccccCccc-cCeeecCCCccccc--------cCchhhccccccCcceeec------cccCCcccccccccccccc
Confidence            3445655555566 9999998664 422        12 3466899999999998      544222 345677999999


Q ss_pred             eeeccccCCCCcccccccccceeeccCCceeEEEEEeE
Q 046380          208 FDEAFVYRPDHFCCRFLEFKVANENSMSSLETLVFSFM  245 (434)
Q Consensus       208 L~l~~~~~~~~~~~~~l~~~~~~~~~~p~L~~L~l~~~  245 (434)
                      |+|+++.....         ..-.+..++|++|++++.
T Consensus        85 L~Ls~N~l~~l---------~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          85 LNLSFNALESL---------SWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             EECCSSCCSCC---------CSTTTCSCCCCEEECCSS
T ss_pred             eeccCCCCccc---------ChhhhccccccccccCCC
Confidence            99999987432         222233445666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.18  E-value=0.0015  Score=52.86  Aligned_cols=44  Identities=9%  Similarity=0.047  Sum_probs=29.5

Q ss_pred             cCCCCCCccEEEEcCcc-CCcHHH---HHHHHhcCCccceEEeecccc
Q 046380          326 GGRGFGNIKTLAVNGFL-GLRNKS---LEELISACILLENLYLNSCAI  369 (434)
Q Consensus       326 ~~~~~~~Lk~L~l~~~~-~~~~~~---l~~l~~~~p~Le~L~l~~~~~  369 (434)
                      .....++|+.+.|..+. .+++++   +...++.+++|++|+++.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            34556778877776443 466654   444456889999999877654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.90  E-value=0.0033  Score=50.88  Aligned_cols=64  Identities=13%  Similarity=0.003  Sum_probs=41.8

Q ss_pred             CCcccEEEeccccCccccee---ecCCCCCCccEEEEcCccCCcHHHHHHHHh---cCCccceEEeecccc
Q 046380          305 SPNLETFVYKAGHGEIASFH---FGGRGFGNIKTLAVNGFLGLRNKSLEELIS---ACILLENLYLNSCAI  369 (434)
Q Consensus       305 ~p~L~~L~l~~~~~~~~~~~---~~~~~~~~Lk~L~l~~~~~~~~~~l~~l~~---~~p~Le~L~l~~~~~  369 (434)
                      .++|++|+++++.....+..   ......++|++|.++++ +++++++..+.+   ..++|++|+++++..
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            56677777766554322211   12345678899999888 788877666544   567799999887754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0018  Score=52.33  Aligned_cols=12  Identities=25%  Similarity=0.473  Sum_probs=7.0

Q ss_pred             cCcccceEEEee
Q 046380          172 FNPSVRRLVVRG  183 (434)
Q Consensus       172 ~~~~L~~L~L~~  183 (434)
                      .+++|+.|+|++
T Consensus        89 ~l~~L~~L~Ls~  100 (162)
T d1koha1          89 KAPNLKILNLSG  100 (162)
T ss_dssp             HSTTCCCCCCTT
T ss_pred             hCCccccccccc
Confidence            455566666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.0029  Score=51.00  Aligned_cols=18  Identities=0%  Similarity=-0.291  Sum_probs=10.5

Q ss_pred             HHhcCCCcceeeeccccC
Q 046380          198 NYFQCSGIRDFDEAFVYR  215 (434)
Q Consensus       198 ~~~~cp~L~~L~l~~~~~  215 (434)
                      +...+|+|++|++++|..
T Consensus        60 ~~~~~~~L~~L~Ls~N~i   77 (162)
T d1koha1          60 IEENIPELLSLNLSNNRL   77 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCC
T ss_pred             HHHhCCCCCEeeCCCccc
Confidence            344566666666666655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.54  E-value=0.077  Score=42.18  Aligned_cols=81  Identities=12%  Similarity=0.030  Sum_probs=35.9

Q ss_pred             ccCccEEEeecCCCCcceee--------cCCcccEEEeccccCcccce---eecCCCCCCccEEEEcCccCCcHHHHHHH
Q 046380          284 LKKLKLVRMENCRFDGPVEI--------HSPNLETFVYKAGHGEIASF---HFGGRGFGNIKTLAVNGFLGLRNKSLEEL  352 (434)
Q Consensus       284 ~~~L~~L~l~~c~~l~~~~~--------~~p~L~~L~l~~~~~~~~~~---~~~~~~~~~Lk~L~l~~~~~~~~~~l~~l  352 (434)
                      .++|++|++.++..++...+        ..++|++|+++++.....+.   .......++++.+.+.++ .++++++..+
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccchhHHHH
Confidence            34566666655443332211        24555555555544322111   111223445555555555 4444444433


Q ss_pred             H---hcCCccceEEee
Q 046380          353 I---SACILLENLYLN  365 (434)
Q Consensus       353 ~---~~~p~Le~L~l~  365 (434)
                      .   ...++|+.++|+
T Consensus        95 ~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          95 VEALQSNTSLIELRID  110 (166)
T ss_dssp             HHGGGGCSSCCEEECC
T ss_pred             HHHHHhCccccEEeec
Confidence            3   234555554444