Citrus Sinensis ID: 046382

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
Protein Sequence
MSLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRFYRGWM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccEEcccccccccccccccEEEcccccccccccHHccccccccEEEcccccccEEcccHHHHccccccEEEcccccccccccccccccccccEEEcccccccEEccccHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEccccEEEEcccHHHHccccccEEEccccccEEEcccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHHcccccccEEEccccEEEEcccccccccccccEEEcccccccccccHHHHHccccccccccccccccccccccEEEEcccccccccccccEEEEEEEEcccEEEEcccHHccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEHHEEEHHHHccccHHHHHHHHHHHHccEEEEEEEEEEEcHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccEEEEccccccEEcccHHccccccEEEEEccccccccccHHHccccccEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHcccccccccccccccHHHHcccccccccccccccccccccccEEEEEccccccccccHHHccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccc
Coil and Loop (DISEMBL)
MSLTINLLKTSLISLMHLISMEKLIlsnnhffqipisleplfnlsklktfdgeicaeteshynsltpkfqltsislsgyidggtfpkflyhqhdlknadlshlnlsgqfpnwllenNTNLVMLLLANnslfgsfrmpihshqnlatldvsnnffhghipveigtylpglmdlnlsrnafngsipssfaDMKMLErldisdnqltgeipermatgcFSLKILALSNnslqghifskkfnlTNLMRLQLDGNKFIGEIPESLSKCYLlgglylsdnhlsgeiprwlgnlsalegirmpnnnlegpipieFCQLSALKildlsnnsifgtlpscfspahieqVHLSKNKIEGRLesiihdspylvtLDLSynrlhgsipnridrlpQLNYLLLAHNYIKGEIPVQLCQLKEVRLIdlshnnlsghipsclvntalsgghheavaptsiwcgrASVYisaclpsrsappmgkeetVQFTTKNMSYYYQGRILtsmsgidlscnkltgeiptqigyLSGIHALNlshnnltgtipttfsnlkQIESLDLSYnllhgkippqlivLNTLEVFKVAYNNlsgkipdraqfstfeedsyegnpflcgkplskscnhnglttvtpeastenqgdslidtdSFLITFTVSYGIVIIGIIGVlyinpywrRRWFYLVEVCMTSCyyfvadnlvprrfyrgwm
Flexible Loop (DISEMBL)
MSLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAClpsrsappmgkEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVtpeastenqgdsLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYyfvadnlvpRRFYRGWM
Low Complexity Region (SEG)
MSLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYgiviigiigvLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRFYRGWM
Disordered region (IsUnstruct)
***TINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLP************VQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPL************************LIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRFYRGW*
Disordered Region (DISOPRED)
MSLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKP*****************************DSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRFYRGW*
Disordered Region (DISEMBL)
MSLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRFYRGWM
Disordered Region (DISPRO)
*SL*INLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRFYRGW*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRFYRGWM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	691	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.820	0.452	0.316	1e-61
Q9LHP4	1141	Receptor-like protein kin	no	no	0.820	0.496	0.326	6e-61
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.832	0.788	0.310	5e-60
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.895	0.495	0.295	5e-58
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.785	0.495	0.311	7e-57
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.849	0.486	0.303	2e-56
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.787	0.466	0.302	3e-56
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.835	0.478	0.306	5e-56
Q9LJF3	1164	Receptor-like protein kin	no	no	0.733	0.435	0.333	2e-55
O65440	992	Leucine-rich repeat recep	no	no	0.733	0.511	0.306	2e-55

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  238 bits (607), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 203/642 (31%), Positives = 299/642 (46%), Gaps = 75/642 (11%)

Query: 34  IPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQH 93
           +P  L  L NL  L   D     E  S    L     +  ++L G    G  PK L    
Sbjct: 232 LPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLV---SIQYLNLIGNQLQGLIPKRLTELA 288

Query: 94  DLKNADLSHLNL------------------------SGQFPNWLLENNTNLVMLLLANNS 129
           +L+  DLS  NL                        SG  P  +  NNT+L  L L+   
Sbjct: 289 NLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQ 348

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIP------VEI-----------GTY------L 166
           L G     I + Q+L  LD+SNN   G IP      VE+           GT       L
Sbjct: 349 LSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNL 408

Query: 167 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN 226
             L +  L  N   G +P     +  LE + + +N+ +GE+P  +   C  L+ +    N
Sbjct: 409 TNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGN-CTRLQEIDWYGN 467

Query: 227 SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGN 286
            L G I S    L +L RL L  N+ +G IP SL  C+ +  + L+DN LSG IP   G 
Sbjct: 468 RLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGF 527

Query: 287 LSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTL-PSCFSPAHIEQVHLSKN 345
           L+ALE   + NN+L+G +P     L  L  ++ S+N   G++ P C S +++    +++N
Sbjct: 528 LTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYL-SFDVTEN 586

Query: 346 KIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 405
             EG +   +  S  L  L L  N+  G IP    ++ +L+ L ++ N + G IPV+L  
Sbjct: 587 GFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL 646

Query: 406 LKEVRLIDLSHNNLSGHIPS------CLVNTALSGGHHEAVAPTSIWCGRASVYISACLP 459
            K++  IDL++N LSG IP+       L    LS        PT I+    +  ++  L 
Sbjct: 647 CKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFS--LTNILTLFLD 704

Query: 460 SRSAPPMGKEETVQFTTKNMSYYYQGRI----------LTSMSGIDLSCNKLTGEIPTQI 509
             S      +E       N     + ++          L+ +  + LS N LTGEIP +I
Sbjct: 705 GNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEI 764

Query: 510 GYLSGIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKV 568
           G L  +  AL+LS+NN TG IP+T S L ++ESLDLS+N L G++P Q+  + +L    +
Sbjct: 765 GQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNL 824

Query: 569 AYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNG 610
           +YNNL GK+  + QFS ++ D++ GN  LCG PLS  CN  G
Sbjct: 825 SYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPLSH-CNRAG 863

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  236 bits (601), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 198/606 (32%), Positives = 305/606 (50%), Gaps = 39/606 (6%)

Query: 6   NLLKTSLISLMHLISMEKLILSNNHFF-QIPISLEPLFNLSKLKTFDGEICAETESHYNS 64
           NL  T   SL   + ++ L LS+N     IP SL  L NL  L     ++  +     + 
Sbjct: 116 NLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISK 175

Query: 65  LTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLS-HLNLSGQFPNWLLENNTNLVML 123
            +   +L S+ L   +  G+ P  L     L+   +  +  +SGQ P+ +  + +NL +L
Sbjct: 176 CS---KLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEI-GDCSNLTVL 231

Query: 124 LLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSI 183
            LA  S+ G+    +   + L TL +      G IP ++G     L+DL L  N+ +GSI
Sbjct: 232 GLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGN-CSELVDLFLYENSLSGSI 290

Query: 184 PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLM 243
           P     +  LE+L +  N L G IPE +   C +LK++ LS N L G I S    L+ L 
Sbjct: 291 PREIGQLTKLEQLFLWQNSLVGGIPEEIGN-CSNLKMIDLSLNLLSGSIPSSIGRLSFLE 349

Query: 244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
              +  NKF G IP ++S C  L  L L  N +SG IP  LG L+ L      +N LEG 
Sbjct: 350 EFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGS 409

Query: 304 IPIEFCQLSALKILDLSNNSIFGTLPS-CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLV 362
           IP      + L+ LDLS NS+ GT+PS  F   ++ ++ L  N + G +   I +   LV
Sbjct: 410 IPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLV 469

Query: 363 TLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGH 422
            L L +NR+ G IP+ I  L ++N+L  + N + G++P ++    E+++IDLS+N+L G 
Sbjct: 470 RLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGS 529

Query: 423 IPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPP-MGKEETVQ--FTTKNM 479
           +P+                P S   G   + +SA   S   P  +G+  ++     +KN+
Sbjct: 530 LPN----------------PVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNL 573

Query: 480 SYYYQGRILTSM---SGI---DLSCNKLTGEIPTQIGYLSGIH-ALNLSHNNLTGTIPTT 532
              + G I TS+   SG+   DL  N+L+GEIP+++G +  +  ALNLS N LTG IP+ 
Sbjct: 574 ---FSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSK 630

Query: 533 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYE 592
            ++L ++  LDLS+N+L G + P L  +  L    ++YN+ SG +PD   F        E
Sbjct: 631 IASLNKLSILDLSHNMLEGDLAP-LANIENLVSLNISYNSFSGYLPDNKLFRQLSPQDLE 689

Query: 593 GNPFLC 598
           GN  LC
Sbjct: 690 GNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  233 bits (593), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 210/677 (31%), Positives = 301/677 (44%), Gaps = 102/677 (15%)

Query: 49  TFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQ 108
           +++G  C ++   +        +T ISL      GT    + + H L   DLS+  LSG 
Sbjct: 78  SWEGITCDDSSDSH--------VTVISLPSRGLSGTLASSVQNIHRLSRLDLSYNRLSGP 129

Query: 109 FPNWLLENNTNLVMLLLANNSLFG------SFRMPIHSHQNLATLDVSNNFFHGHIPVEI 162
            P         L++L L+ NS  G      +F    +   ++ TLD+S+N   G I +  
Sbjct: 130 LPPGFFSTLDQLMILNLSYNSFNGELPLEQAFGNESNRFFSIQTLDLSSNLLEGEI-LRS 188

Query: 163 GTYLPG---LMDLNLSRNAFNGSIPSSFADMK-MLERLDISDNQLTGEIPERMATGCFSL 218
             YL G   L+  N+S N+F G IPS        L +LD S N  +G I + +   C  L
Sbjct: 189 SVYLQGTINLISFNVSNNSFTGPIPSFMCRSSPQLSKLDFSYNDFSGHISQELGR-CLRL 247

Query: 219 KILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 278
            +L    N+L G I S+ +NL+ L +L L  N+  G+I  ++++   L  L L  NHL G
Sbjct: 248 TVLQAGFNNLSGVIPSEIYNLSELEQLFLPANQLTGKIDNNITRLRKLTSLALYSNHLEG 307

Query: 279 EIPRWLGNLSALEGIRMPNNNLEGPIP-------------------------IEFCQLSA 313
           EIP  +GNLS+L  +++  NN+ G +P                         +EF QL +
Sbjct: 308 EIPMDIGNLSSLRSLQLHINNINGTVPLSLANCTKLVKLNLRVNQLGGGLTELEFSQLQS 367

Query: 314 LKILDLSNNSIFGTLP-SCFSPAHIEQVHLSKNKIEGRLE-------------------- 352
           LK+LDL NNS  G LP   FS   +  +  + NK+ G +                     
Sbjct: 368 LKVLDLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTGEISPQVLELESLSFMGLSDNKLT 427

Query: 353 ------SIIHDSPYLVTLDLSYNRLHGSIPNRIDRL-----PQLNYLLLAHNYIKGEIPV 401
                 SI+     L TL L+ N    ++P++ D L     P+L    +    ++GEIP 
Sbjct: 428 NITGALSILQGCRKLSTLILAKNFYDETVPSKEDFLSPDGFPKLRIFGVGACRLRGEIPA 487

Query: 402 QLCQLKEVRLIDLSHNNLSGHIPSCLVNTA------LSGGHHEAVAPTSIWCGRASVYIS 455
            L  L +V ++DLS N   G IP  L          LS        P  ++  R      
Sbjct: 488 WLINLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLSDNLLTGELPKELFQLR------ 541

Query: 456 ACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSM-SGIDLSCNKLTGEIPTQIGYLSG 514
           A +  +       E  +     N++   Q   L S    I +  N LTG IP ++G L  
Sbjct: 542 ALMSQKITENNYLELPIFLNPNNVTTNQQYNKLYSFPPTIYIRRNNLTGSIPVEVGQLKV 601

Query: 515 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574
           +H L L  NNL+G+IP   SNL  +E LDLS N L G IP  L  LN L  F VA N+L 
Sbjct: 602 LHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLE 661

Query: 575 GKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFL 634
           G IP   QF TF + ++EGNP LCG  L  SC         P  + EN  D L  T  FL
Sbjct: 662 GPIPSEGQFDTFPKANFEGNPLLCGGVLLTSCK--------PTRAKEN--DELNRT--FL 709

Query: 635 ITFTVSYGIVIIGIIGV 651
           +   + Y +  + I+ V
Sbjct: 710 MGIAIGYFLSFVSILVV 726

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  226 bits (576), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 214/723 (29%), Positives = 329/723 (45%), Gaps = 104/723 (14%)

Query: 15  LMHLISMEKLILSNNHFF-QIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
           L  L ++E L L+NN    +IP  L  +  L  L     ++         SL     L +
Sbjct: 235 LGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPK---SLADLGNLQT 291

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS 133
           + LS     G  P+  ++   L +  L++ +LSG  P  +  NNTNL  L+L+   L G 
Sbjct: 292 LDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGE 351

Query: 134 FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 193
             + +   Q+L  LD+SNN   G IP E    L  L DL L  N   G++  S +++  L
Sbjct: 352 IPVELSKCQSLKQLDLSNNSLAGSIP-EALFELVELTDLYLHNNTLEGTLSPSISNLTNL 410

Query: 194 ERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFI 253
           + L +  N L G++P+ + +    L++L L  N   G I  +  N T+L  + + GN F 
Sbjct: 411 QWLVLYHNNLEGKLPKEI-SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFE 469

Query: 254 GEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA 313
           GEIP S+ +   L  L+L  N L G +P  LGN   L  + + +N L G IP  F  L  
Sbjct: 470 GEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKG 529

Query: 314 LKILDLSNNSIFGTLP-SCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
           L+ L L NNS+ G LP S  S  ++ +++LS N++ G +  +   S YL + D++ N   
Sbjct: 530 LEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYL-SFDVTNNGFE 588

Query: 373 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLV---- 428
             IP  +     L+ L L  N + G+IP  L +++E+ L+D+S N L+G IP  LV    
Sbjct: 589 DEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKK 648

Query: 429 -------NTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSY 481
                  N  LSG       P   W G+ S      L S            QF     + 
Sbjct: 649 LTHIDLNNNFLSG-------PIPPWLGKLSQLGELKLSSN-----------QFVESLPTE 690

Query: 482 YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIH------------------------- 516
            +    L  +S   L  N L G IP +IG L  ++                         
Sbjct: 691 LFNCTKLLVLS---LDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYE 747

Query: 517 ------------------------ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 552
                                   AL+LS+NN TG IP+T   L ++E+LDLS+N L G+
Sbjct: 748 LRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGE 807

Query: 553 IPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLT 612
           +P  +  + +L    V++NNL GK+  + QFS +  DS+ GN  LCG PLS+ CN     
Sbjct: 808 VPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSR-CNR---- 860

Query: 613 TVTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTS 672
                ++ + QG   +   S +I   +S  +  IG++ +L I  ++++R  +  +V   S
Sbjct: 861 ---VRSNNKQQG---LSARSVVIISAIS-ALTAIGLM-ILVIALFFKQRHDFFKKVGHGS 912

Query: 673 CYY 675
             Y
Sbjct: 913 TAY 915

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  222 bits (566), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 197/632 (31%), Positives = 283/632 (44%), Gaps = 89/632 (14%)

Query: 55  CAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLL 114
           C   E      +P+ ++TSI LS     G  P  +     L   DLSH  LSG  P   L
Sbjct: 78  CCSWEGISCDKSPENRVTSIILSSRGLSGNLPSSVLDLQRLSRLDLSHNRLSGPLPPGFL 137

Query: 115 ENNTNLVMLLLANNSLFGSFRMPIHSHQN-------LATLDVSNNFFHGHIPVEIGTYLP 167
                L++L L+ NS  G   +   S  N       + T+D+S+N   G I +    +L 
Sbjct: 138 SALDQLLVLDLSYNSFKGELPLQ-QSFGNGSNGIFPIQTVDLSSNLLEGEI-LSSSVFLQ 195

Query: 168 GLMDL---NLSRNAFNGSIPSSFADMK-MLERLDISDNQLTGEIPERMATGCFSLKILAL 223
           G  +L   N+S N+F GSIPS        L +LD S N  +G++ + ++  C  L +L  
Sbjct: 196 GAFNLTSFNVSNNSFTGSIPSFMCTASPQLTKLDFSYNDFSGDLSQELSR-CSRLSVLRA 254

Query: 224 SNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRW 283
             N+L G I  + +NL  L +L L  N+  G+I   +++   L  L L  NH+ GEIP+ 
Sbjct: 255 GFNNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDNGITRLTKLTLLELYSNHIEGEIPKD 314

Query: 284 LGNLSALEGIRMPNNNLEGPIP-------------------------IEFCQLSALKILD 318
           +G LS L  +++  NNL G IP                         I+F +  +L ILD
Sbjct: 315 IGKLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLNLRVNQLGGTLSAIDFSRFQSLSILD 374

Query: 319 LSNNSIFGTLPS-CFSPAHIEQVHLSKNKIEGRLE------------------------- 352
           L NNS  G  PS  +S   +  +  + NK+ G++                          
Sbjct: 375 LGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQISPQVLELESLSFFTFSDNKMTNLTGA 434

Query: 353 -SIIHDSPYLVTLDLSYNRLHGSIPN-----RIDRLPQLNYLLLAHNYIKGEIPVQLCQL 406
            SI+     L TL ++ N    ++P+     R D  P L    +    + GEIP  L +L
Sbjct: 435 LSILQGCKKLSTLIMAKNFYDETVPSNKDFLRSDGFPSLQIFGIGACRLTGEIPAWLIKL 494

Query: 407 KEVRLIDLSHNNLSGHIPSCLVNTA------LSGGHHEAVAPTSIWCGRASVYISACLPS 460
           + V ++DLS N   G IP  L          LS        P  ++  RA       L S
Sbjct: 495 QRVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSDNFLTGELPKELFQLRA-------LMS 547

Query: 461 RSAPPMGKEETVQFTT----KNMSYYYQGRILTSM-SGIDLSCNKLTGEIPTQIGYLSGI 515
           + A    +   ++        N++   Q   L+S+   I +  N LTG IP ++G L  +
Sbjct: 548 QKAYDATERNYLELPVFVNPNNVTTNQQYNQLSSLPPTIYIKRNNLTGTIPVEVGQLKVL 607

Query: 516 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG 575
           H L L  NN +G+IP   SNL  +E LDLS N L G+IP  L  L+ L  F VA N LSG
Sbjct: 608 HILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSG 667

Query: 576 KIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCN 607
            IP   QF TF + ++EGNP LCG  L  SC+
Sbjct: 668 PIPTGTQFDTFPKANFEGNPLLCGGVLLTSCD 699

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  221 bits (562), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 195/642 (30%), Positives = 311/642 (48%), Gaps = 55/642 (8%)

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
           +L   S+ G    G+ P+  +   +L   DLS  N S  FP++  ++ +NL  L L++N 
Sbjct: 213 ELEFFSIKGNKLAGSIPELDFK--NLSYLDLSANNFSTVFPSF--KDCSNLQHLDLSSNK 268

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPG--LMDLNLSRNAFNGSIPSSF 187
            +G     + S   L+ L+++NN F G +P      LP   L  L L  N F G  P+  
Sbjct: 269 FYGDIGSSLSSCGKLSFLNLTNNQFVGLVP-----KLPSESLQYLYLRGNDFQGVYPNQL 323

Query: 188 ADM-KMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHI-FSKKFNLTNLMRL 245
           AD+ K +  LD+S N  +G +PE +   C SL+++ +SNN+  G +       L+N+  +
Sbjct: 324 ADLCKTVVELDLSYNNFSGMVPESLGE-CSSLELVDISNNNFSGKLPVDTLLKLSNIKTM 382

Query: 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGN--LSALEGIRMPNNNLEGP 303
            L  NKF+G +P+S S    L  L +S N+L+G IP  +    ++ L+ + + NN  +GP
Sbjct: 383 VLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGP 442

Query: 304 IPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLV 362
           IP      S L  LDLS N + G++PS   S + ++ + L  N++ G +   +     L 
Sbjct: 443 IPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALE 502

Query: 363 TLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGH 422
            L L +N L G IP  +    +LN++ L++N + GEIP  L +L  + ++ L +N++SG+
Sbjct: 503 NLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGN 562

Query: 423 IPSCL----------VNTALSGG-------HHEAVAPTSIWCGRASVYIS-----ACLPS 460
           IP+ L          +NT    G               ++  G+  VYI       C  +
Sbjct: 563 IPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGA 622

Query: 461 RSAPPMG---KEETVQFTTK---NMSYYYQGRIL------TSMSGIDLSCNKLTGEIPTQ 508
            +    G   +E+  + +T+   N +  Y+G          SM  +DLS NKL G IP +
Sbjct: 623 GNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKE 682

Query: 509 IGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKV 568
           +G +  +  LNL HN+L+G IP     LK +  LDLSYN  +G IP  L  L  L    +
Sbjct: 683 LGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDL 742

Query: 569 AYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLI 628
           + NNLSG IP+ A F TF +  +  N  LCG PL   C+    +       +  +  SL 
Sbjct: 743 SNNNLSGMIPESAPFDTFPDYRFANNS-LCGYPLPLPCSSGPKSDANQHQKSHRRQASLA 801

Query: 629 DTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCM 670
            + +  + F++     I G+I V       RR+    +E  M
Sbjct: 802 GSVAMGLLFSL---FCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  220 bits (560), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 183/605 (30%), Positives = 276/605 (45%), Gaps = 61/605 (10%)

Query: 71  LTSISLSGYIDGGTFPKFLYHQ--HDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANN 128
           LT++ LS  I     P+         LK  DL+H NLSG F +       NL    L+ N
Sbjct: 177 LTTVDLSYNILSDKIPESFISDFPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQN 236

Query: 129 SLFGSFRMPI----------------------------HSHQNLATLDVSNNFFHGHIPV 160
           +L G  + PI                             S QNL  L +++N   G IP 
Sbjct: 237 NLSGD-KFPITLPNCKFLETLNISRNNLAGKIPNGEYWGSFQNLKQLSLAHNRLSGEIPP 295

Query: 161 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKI 220
           E+      L+ L+LS N F+G +PS F     L+ L++ +N L+G+    + +    +  
Sbjct: 296 ELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITY 355

Query: 221 LALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE---SLSKCYLLGGLYLSDNHLS 277
           L ++ N++ G +     N +NL  L L  N F G +P    SL    +L  + +++N+LS
Sbjct: 356 LYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLS 415

Query: 278 GEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPS--CFSPA 335
           G +P  LG   +L+ I +  N L GPIP E   L  L  L +  N++ GT+P   C    
Sbjct: 416 GTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGG 475

Query: 336 HIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYI 395
           ++E + L+ N + G +   I     ++ + LS NRL G IP+ I  L +L  L L +N +
Sbjct: 476 NLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSL 535

Query: 396 KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYI- 454
            G +P QL   K +  +DL+ NNL+G +P  L + A        V P S+  G+   ++ 
Sbjct: 536 SGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQA------GLVMPGSV-SGKQFAFVR 588

Query: 455 -SACLPSRSAPPMGKEETVQFTTKN---------MSYYYQGRILTSMSG------IDLSC 498
                  R A  + + E ++               +  Y G  + + S        D+S 
Sbjct: 589 NEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISY 648

Query: 499 NKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI 558
           N ++G IP   G +  +  LNL HN +TGTIP +F  LK I  LDLS+N L G +P  L 
Sbjct: 649 NAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLG 708

Query: 559 VLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEA 618
            L+ L    V+ NNL+G IP   Q +TF    Y  N  LCG PL + C       +T   
Sbjct: 709 SLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPL-RPCGSAPRRPITSRI 767

Query: 619 STENQ 623
             + Q
Sbjct: 768 HAKKQ 772

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  219 bits (558), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 194/633 (30%), Positives = 310/633 (48%), Gaps = 56/633 (8%)

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
           +L   SL G    G+ P+  +   +L   DLS  N S  FP++  ++ +NL  L L++N 
Sbjct: 213 ELEFFSLKGNKLAGSIPELDFK--NLSYLDLSANNFSTVFPSF--KDCSNLQHLDLSSNK 268

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPG--LMDLNLSRNAFNGSIPSSF 187
            +G     + S   L+ L+++NN F G +P      LP   L  L L  N F G  P+  
Sbjct: 269 FYGDIGSSLSSCGKLSFLNLTNNQFVGLVP-----KLPSESLQYLYLRGNDFQGVYPNQL 323

Query: 188 ADM-KMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN-LTNLMRL 245
           AD+ K +  LD+S N  +G +PE +   C SL+++ +S N+  G +     + L+N+  +
Sbjct: 324 ADLCKTVVELDLSYNNFSGMVPESLGE-CSSLELVDISYNNFSGKLPVDTLSKLSNIKTM 382

Query: 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGN--LSALEGIRMPNNNLEGP 303
            L  NKF+G +P+S S    L  L +S N+L+G IP  +    ++ L+ + + NN  +GP
Sbjct: 383 VLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGP 442

Query: 304 IPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLV 362
           IP      S L  LDLS N + G++PS   S + ++ + L  N++ G +   +     L 
Sbjct: 443 IPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALE 502

Query: 363 TLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGH 422
            L L +N L G IP  +    +LN++ L++N + GEIP  L +L  + ++ L +N++SG+
Sbjct: 503 NLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGN 562

Query: 423 IPSCL----------VNTALSGG-------HHEAVAPTSIWCGRASVYIS-----ACLPS 460
           IP+ L          +NT    G               ++  G+  VYI       C  +
Sbjct: 563 IPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKRYVYIKNDGSKECHGA 622

Query: 461 RSAPPMG---KEETVQFTTK---NMSYYYQGRIL------TSMSGIDLSCNKLTGEIPTQ 508
            +    G   +E+  + +T+   N +  Y+G          SM  +DLS NKL G IP +
Sbjct: 623 GNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKE 682

Query: 509 IGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKV 568
           +G +  +  LNL HN+L+G IP     LK +  LDLSYN  +G IP  L  L  L    +
Sbjct: 683 LGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDL 742

Query: 569 AYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLI 628
           + NNLSG IP+ A F TF +  +  N  LCG PL   C+    +       +  +  SL 
Sbjct: 743 SNNNLSGMIPESAPFDTFPDYRFANNS-LCGYPLPIPCSSGPKSDANQHQKSHRRQASLA 801

Query: 629 DTDSFLITFTVSYGIVIIGIIGVLYINPYWRRR 661
            + +  + F++     I G+I ++ I    RRR
Sbjct: 802 GSVAMGLLFSL---FCIFGLI-IVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  218 bits (554), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 185/555 (33%), Positives = 274/555 (49%), Gaps = 48/555 (8%)

Query: 93  HDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS-FRMPIHSHQNLATLDVSN 151
           + LK+ DLS  N++G F         NL +  L+ NS+ G  F + + + + L TL++S 
Sbjct: 201 NSLKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDRFPVSLSNCKLLETLNLSR 260

Query: 152 NFFHGHIPVE--IGTYLPGLMDLNLSRNAFNGSIPSSFADM-KMLERLDISDNQLTGEIP 208
           N   G IP +   G +   L  L+L+ N ++G IP   + + + LE LD+S N LTG++P
Sbjct: 261 NSLIGKIPGDDYWGNF-QNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLP 319

Query: 209 ERMATGCFSLKILALSNNSLQGHIFSKKFN-LTNLMRLQLDGNKFIGEIPESLSKCYLLG 267
           +   T C SL+ L L NN L G   S   + L+ +  L L  N   G +P SL+ C  L 
Sbjct: 320 QSF-TSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLR 378

Query: 268 GLYLSDNHLSGEIPRWLGNL---SALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
            L LS N  +GE+P    +L   S LE + + NN L G +P+E  +  +LK +DLS N++
Sbjct: 379 VLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNAL 438

Query: 325 FGTLPSCFS--PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRL 382
            G +P      P   + V  + N   G  ESI  D   L TL L+ N L GS+P  I + 
Sbjct: 439 TGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGSLPESISKC 498

Query: 383 PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTA----------- 431
             + ++ L+ N + GEIPV + +L+++ ++ L +N+L+G+IPS L N             
Sbjct: 499 TNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNN 558

Query: 432 LSG-------GHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYY-- 482
           L+G            V P S+  G+   ++     +      G  E      + + ++  
Sbjct: 559 LTGNLPGELASQAGLVMPGSV-SGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLEHFPM 617

Query: 483 ---------YQGRIL------TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTG 527
                    Y G  +       SM  +DLS N ++G IP   G +  +  LNL HN LTG
Sbjct: 618 VHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTG 677

Query: 528 TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFE 587
           TIP +F  LK I  LDLS+N L G +P  L  L+ L    V+ NNL+G IP   Q +TF 
Sbjct: 678 TIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIPFGGQLTTFP 737

Query: 588 EDSYEGNPFLCGKPL 602
              Y  N  LCG PL
Sbjct: 738 LTRYANNSGLCGVPL 752

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  217 bits (553), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 169/552 (30%), Positives = 269/552 (48%), Gaps = 45/552 (8%)

Query: 99  DLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHI 158
           DLS+LN+SG     +   + +LV L +++NS  G     I+    L  L++S+N F G +
Sbjct: 82  DLSNLNISGTISPEISRLSPSLVFLDISSNSFSGELPKEIYELSGLEVLNISSNVFEGEL 141

Query: 159 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSL 218
                + +  L+ L+   N+FNGS+P S   +  LE LD+  N   GEIP R      SL
Sbjct: 142 ETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGNYFDGEIP-RSYGSFLSL 200

Query: 219 KILALSNNSLQGHIFSKKFNLTNLMRLQLDG-NKFIGEIPES-----------LSKCYLL 266
           K L+LS N L+G I ++  N+T L++L L   N + G IP             L+ C L 
Sbjct: 201 KFLSLSGNDLRGRIPNELANITTLVQLYLGYYNDYRGGIPADFGRLINLVHLDLANCSLK 260

Query: 267 GG-------------LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA 313
           G              L+L  N L+G +PR LGN+++L+ + + NN LEG IP+E   L  
Sbjct: 261 GSIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNFLEGEIPLELSGLQK 320

Query: 314 LKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
           L++ +L  N + G +P   S    ++ + L  N   G++ S +  +  L+ +DLS N+L 
Sbjct: 321 LQLFNLFFNRLHGEIPEFVSELPDLQILKLWHNNFTGKIPSKLGSNGNLIEIDLSTNKLT 380

Query: 373 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLV---- 428
           G IP  +    +L  L+L +N++ G +P  L Q + +    L  N L+  +P  L+    
Sbjct: 381 GLIPESLCFGRRLKILILFNNFLFGPLPEDLGQCEPLWRFRLGQNFLTSKLPKGLIYLPN 440

Query: 429 -------NTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKE----ETVQFTTK 477
                  N  L+G   E  A  + +     + +S    S   P   +     + +     
Sbjct: 441 LSLLELQNNFLTGEIPEEEAGNAQFSSLTQINLSNNRLSGPIPGSIRNLRSLQILLLGAN 500

Query: 478 NMSYYYQGRI--LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSN 535
            +S    G I  L S+  ID+S N  +G+ P + G    +  L+LSHN ++G IP   S 
Sbjct: 501 RLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDLSHNQISGQIPVQISQ 560

Query: 536 LKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNP 595
           ++ +  L++S+N  +  +P +L  + +L     ++NN SG +P   QFS F   S+ GNP
Sbjct: 561 IRILNYLNVSWNSFNQSLPNELGYMKSLTSADFSHNNFSGSVPTSGQFSYFNNTSFLGNP 620

Query: 596 FLCGKPLSKSCN 607
           FLCG   S  CN
Sbjct: 621 FLCGFS-SNPCN 631

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
255581263	912	serine-threonine protein kinase, plant-t	0.916	0.694	0.549	0.0
224142481	781	predicted protein [Populus trichocarpa]	0.942	0.833	0.490	1e-161
224073452	710	predicted protein [Populus trichocarpa]	0.958	0.932	0.453	1e-151
224134891	953	predicted protein [Populus trichocarpa]	0.950	0.689	0.450	1e-147
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.942	0.444	0.468	1e-146
224073382	1309	predicted protein [Populus trichocarpa]	0.956	0.504	0.449	1e-145
224073436	1014	predicted protein [Populus trichocarpa]	0.959	0.653	0.442	1e-144
224073422	969	predicted protein [Populus trichocarpa]	0.934	0.666	0.447	1e-143
359482735	1097	PREDICTED: receptor-like protein 12-like	0.901	0.567	0.458	1e-143
224123984	1016	predicted protein [Populus trichocarpa]	0.947	0.644	0.443	1e-143

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/659 (54%), Positives = 442/659 (67%), Gaps = 26/659 (3%)

Query: 18  LISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGE---ICAETESHYNSLTPKFQLTSI 74
           L S+  L +SNNHF Q+P SL P FN S LK   G+   I  E E H     P+FQL SI
Sbjct: 275 LKSLVDLDVSNNHF-QVPFSLGPFFNHSNLKHIRGQNNAIYLEAELHS---APRFQLISI 330

Query: 75  SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSF 134
             SGY   GTFP FLYHQ++L+  DLSHL+L G+FPNWLL NNT L +L L NNSL G  
Sbjct: 331 IFSGYGICGTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHL 390

Query: 135 RMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 194
           ++P+H H NL  LD+SNN  H HIP+EIGT+LP L  LN+S N F+GSIPSSF +M  L 
Sbjct: 391 QLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLR 450

Query: 195 RLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIG 254
            LD+S+NQL+G IPE +ATGCFSL  L LSNNSLQG +FSK+FNLTNL  L+LD N F G
Sbjct: 451 ILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSG 510

Query: 255 EIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSAL 314
            IP+SLSK   L  + LSDNHLSG IP W+GNLS L+ + + NN L+GPIP+EFCQL  L
Sbjct: 511 RIPKSLSKSA-LSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYL 569

Query: 315 KILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS 374
           ++LDL+NNS+ G LPSC SP+ I  VHLS+N IEG   +    S +LVTLDLS NR+ G 
Sbjct: 570 EVLDLANNSVSGILPSCLSPSSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDLSSNRITGR 629

Query: 375 IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSG 434
           IP  I  +  L  L L  N   GEIP Q+C L ++ LI L+ NNLSG IPSC     L  
Sbjct: 630 IPTLIGGINALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC-----LQL 684

Query: 435 GHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGI 494
              +++AP        +      LP R   PM       FTTK  SY YQG+IL+ +SGI
Sbjct: 685 DQSDSLAPDVP--PVPNPLNPYYLPVR---PM------YFTTKRRSYSYQGKILSYISGI 733

Query: 495 DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 554
           D SCNKLTGEIP ++G  S I++LNLS+N  TG IP+TFSNLKQIESLDLSYN L+G IP
Sbjct: 734 DFSCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIP 793

Query: 555 PQLIVLNTLEVFKVAYNNLSGKIPDR-AQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTT 613
            QL+ L  L  F VA+NNL GK P R  QF+TFE  SYEGNP LCG PL KSC     ++
Sbjct: 794 SQLLELKFLSYFSVAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASS 853

Query: 614 VTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTS 672
             P AS  ++  + +D ++F  +F VSY  VIIG+  VLYINP WRR WF  V++C++S
Sbjct: 854 A-PRASAMDEESNFLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 337/687 (49%), Positives = 446/687 (64%), Gaps = 36/687 (5%)

Query: 11  SLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDG---EICAETESHYNSLTP 67
           SL  +  L S+  L LS+NHF QIPISL P FNLS LK  +G   EI   TE  +N L P
Sbjct: 117 SLSRIGSLTSIRDLKLSDNHF-QIPISLGPFFNLSNLKNLNGDHNEIYESTELVHN-LIP 174

Query: 68  KFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLAN 127
           +FQL  +SL+ +  GGTFPKFLY+QHDL+  DLSH+ + G+FP+WLL+NNT L  L L N
Sbjct: 175 RFQLQRLSLACHGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVN 234

Query: 128 NSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF 187
           +SL GS ++P  SH NL+ LD+S N     IP +IG Y P L  LNLSRN F+GSIPSS 
Sbjct: 235 SSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSI 294

Query: 188 ADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL 247
           ++M  L  LD+S+N L+G IPE++  GC SL+ L LSNN L+G  F + FNL  L  L L
Sbjct: 295 SNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLIL 354

Query: 248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE 307
            GN+  G +P SLS    L  L +S N+LSG+IPRW+G +S+L+ + +  NNL G +P  
Sbjct: 355 SGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSS 414

Query: 308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLS 367
           FC                       S   + +V+LSKNK+EG L   +     L  LDLS
Sbjct: 415 FC-----------------------SSRTMTEVYLSKNKLEGSLIGALDGCLSLNRLDLS 451

Query: 368 YNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
           +N   G IP  I  L +L++LLL +N ++G+IP QLC+L+++ LIDLSHN+L GHI  CL
Sbjct: 452 HNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCL 511

Query: 428 VNTALSGGHHE-AVAPTSIWCGRASV--YISACLPSRSAPPMGKEETVQFTTKNMSYYYQ 484
             T+      E ++ P+    GR +    I   +P+   P M K  +V+FTTK++SY ++
Sbjct: 512 QPTSKWQRERETSLNPSGNSLGRENRGPQIVFPVPAVEDPSMNK--SVEFTTKSISYSFK 569

Query: 485 GRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDL 544
           G IL  +SGIDLSCN LTGEIP ++G LS I  LNLSHN+LTG IP TFSNLK+IESLDL
Sbjct: 570 GIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDL 629

Query: 545 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR-AQFSTFEEDSYEGNPFLCGKPLS 603
           SYN L+G+IP QL+ LN L  F VA+NNLSGK P+  AQFSTF +  YEGNP LCG PL+
Sbjct: 630 SYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLA 689

Query: 604 KSCNHNGLTTVTPEAST-ENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRW 662
           ++C      +  P + T + + + +ID ++F++TF+V+Y +V++ I  VLYINP WRR W
Sbjct: 690 RNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAW 749

Query: 663 FYLVEVCMTSCYYFVADNL-VPRRFYR 688
           FY +   + +CYYF+ DNL VP RF R
Sbjct: 750 FYFIGESINNCYYFLVDNLPVPARFRR 776

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 314/693 (45%), Positives = 417/693 (60%), Gaps = 31/693 (4%)

Query: 15  LMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGE--ICAETESHYNSLTPKFQLT 72
           L +LIS+E L LSNN  F++PIS++P  N S LK F  E        + +++L PKFQL 
Sbjct: 23  LTNLISLEFLSLSNN-LFEVPISIKPFMNHSSLKFFSSENNKLVTEPAAFDNLIPKFQLV 81

Query: 73  SISLSGYIDG---GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
              LS           P FLY+Q DL+  DLSH N++G FP+WLL+NNT L  L L++NS
Sbjct: 82  FFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSDNS 141

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 189
             G+ ++  H H N+  LD+SNN  +G IP +I    P L  L +++N F G IPS   +
Sbjct: 142 FIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFPNLHTLRMAKNGFTGCIPSCLGN 201

Query: 190 MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDG 249
           +  L  LD+S+NQL+    E++ T    + +L LSNN+L G I +  FN + L  L L+G
Sbjct: 202 ISSLSFLDLSNNQLSTVKLEQLTT----IWVLKLSNNNLGGKIPTSVFNSSRLNFLYLNG 257

Query: 250 NKFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF 308
           N F G+I +  L +  +   L LS+N  SG +PR   N S L  I +  N+ +GPIP +F
Sbjct: 258 NNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVNFSILGVIDLSGNHFKGPIPRDF 317

Query: 309 CQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSY 368
           C+   L+ LDLS N++ G +PSCFSP  I  VHLSKN++ G L     +S YLVT+DL  
Sbjct: 318 CKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNRLSGPLTYAFFNSSYLVTMDLRE 377

Query: 369 NRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLV 428
           N   GSIPN I  L  L+ LLL  N+  GE+P+QLC L+++ ++D+SHN LSG +PSCL 
Sbjct: 378 NSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCLLEQLSILDVSHNQLSGPLPSCLG 437

Query: 429 NTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGK--------------EETVQF 474
           N        +A+   +   G  S  I         PP+                EE  +F
Sbjct: 438 NLTFKKSDKKAILEVAY--GFISESIEKAYYEIMGPPLVDSVDNLRNFFLFNFTEEVTEF 495

Query: 475 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFS 534
           TTKNM Y Y+G++L  M GIDLS N   G IP + G LS I ++NLSHNNLTG+IP TFS
Sbjct: 496 TTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPEFGNLSKILSVNLSHNNLTGSIPATFS 555

Query: 535 NLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSYEG 593
           NL  IESLDLSYN L+G IPPQ   + TLEVF VA+NNLSGK P+R  QF TF+E  YEG
Sbjct: 556 NLMHIESLDLSYNNLNGAIPPQFTEVTTLEVFSVAHNNLSGKTPERIYQFGTFDESCYEG 615

Query: 594 NPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLY 653
           NPFLCG PL  +C+   + +  P  + E   D  ID + F I+F V Y +V++ I  VLY
Sbjct: 616 NPFLCGPPLPNNCSEKAVVS-QPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVLY 674

Query: 654 INPYWRRRWFYLVEVCMTSCYYFVADNLVPRRF 686
           INPYWRRRW Y +E C+ +CYYFV  +   R+F
Sbjct: 675 INPYWRRRWLYFIEDCIDTCYYFVVASF--RKF 705

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 314/697 (45%), Positives = 418/697 (59%), Gaps = 40/697 (5%)

Query: 15  LMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGE---ICAETESHYNSLTPKFQL 71
           L +LIS+E L+LSNN  F++PIS++P  N S LK F  E   +  E  + +++L PKFQL
Sbjct: 267 LTNLISLEFLLLSNN-LFEVPISMKPFLNHSSLKFFSSENNRLVTEPVA-FDNLIPKFQL 324

Query: 72  TSISLSGYIDG---GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANN 128
               LS           P FLY+Q DL+  DLSH N++G FP+WLL+NNT L  L L+ N
Sbjct: 325 VFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSAN 384

Query: 129 SLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA 188
              G+ ++  H + N+  LD+SNN   G I  +I    P L  L +++N F G IPS   
Sbjct: 385 FFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSCLG 444

Query: 189 DMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLD 248
           ++  L  LD+S+NQL+    E++     ++ +L LSNNSL G I +  FN +    L L+
Sbjct: 445 NISSLLFLDLSNNQLSTVQLEQL-----TIPVLKLSNNSLGGQIPTSVFNSSTSQFLYLN 499

Query: 249 GNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE 307
           GN F G+I +  L     L  L LS+N  SG +PR   N + L  + +  N+ +GPIP +
Sbjct: 500 GNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVLDLSKNHYKGPIPKD 559

Query: 308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLS 367
           FC+L  L+ LDLS N++ G +PSCFSP  +  VHLSKN++ G L     +S YLVT+DL 
Sbjct: 560 FCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTYGFFNSSYLVTMDLR 619

Query: 368 YNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
            N L GSIPN I     L+ LLL  N+  GE+PVQLC L+++ ++D+S N LSG +PSCL
Sbjct: 620 DNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCL 679

Query: 428 VNTALSGGHHEA---VAPTSIWCGRASVYISACLPS--RSAPPMGK-------EETVQFT 475
            N        +A   +  + +       Y     P    S   +GK       EE ++F 
Sbjct: 680 GNLTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLLGKDFRLNFTEEVIEFR 739

Query: 476 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSN 535
           TKNM Y Y+G IL+ MSGIDLS N   G IP + G LS I +LNLSHNN T +IP TFSN
Sbjct: 740 TKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLNLSHNNPTESIPATFSN 799

Query: 536 LKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSYEGN 594
           LKQIESLDLSYN L+G IPPQL  + TLEVF VA+NNLSG  P+R  QF TF+E  YEGN
Sbjct: 800 LKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPERKYQFGTFDESCYEGN 859

Query: 595 PFLCGKPLSKSCNHNGLTTVTPEAST----ENQGD-SLIDTDSFLITFTVSYGIVIIGII 649
           PFLCG PL  +C      +V P +S     + QGD   ID + F I+F V Y +V++ I 
Sbjct: 860 PFLCGPPLRNNC------SVEPVSSQPVPDDEQGDVGFIDMEFFYISFGVCYTVVVMTIA 913

Query: 650 GVLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRF 686
            VLYINPYWRRRW Y +E C+ +CYYF+  +   R+F
Sbjct: 914 AVLYINPYWRRRWLYFIEDCIDTCYYFMVASF--RKF 948

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 316/675 (46%), Positives = 417/675 (61%), Gaps = 24/675 (3%)

Query: 18   LISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAET----ESHYNSLTPKFQLTS 73
            L+ +E L LS+N F   P  +      SKL+  D  IC       ES   +  P FQL  
Sbjct: 790  LMKLEFLSLSHNVFQTFP-PISSFAKHSKLEVLD-LICGNNTLLLESEDQTWVPSFQLKV 847

Query: 74   ISLSGYI-DGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFG 132
              LS  I   G+ P FL++QHDL+  DLS+ +L   FP WL++NNT L  L L NNSL G
Sbjct: 848  FRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTG 907

Query: 133  SFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 192
             F +P   +   + +D+SNN   G +P  I   LP LM LN+SRN+F GSIPS F  M+ 
Sbjct: 908  YFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGMRK 966

Query: 193  LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKF 252
            L  LD+S+N  TG IPE +A GC SL+ L LS N L G +F +  NL +L  L+LD N F
Sbjct: 967  LLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHF 1026

Query: 253  IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLS 312
             G+IP+ LS    L  LY+S N +SG++P W+GN+S L  + MPNN+LEGPIP+EFC L 
Sbjct: 1027 SGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLD 1085

Query: 313  ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
            AL++LDLSNN++ G+LPSCFSP+ +  VHL +N + G L      S  L TLD+  N L 
Sbjct: 1086 ALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNNLS 1145

Query: 373  GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL----V 428
            G IP+ I     L+ LLL  N+ +G+IP QLCQL ++ ++DLS+N+LSGHIPSCL     
Sbjct: 1146 GGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQF 1205

Query: 429  NTALSGGHHEAVA--PTSIWCGRA--SVYISACLPSRSAPPMGKEETV-QFTTKNMSYYY 483
             T    G    ++  P+  +      S +I     + ++ P+  ++ + +FTTKN + +Y
Sbjct: 1206 RTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTDFY 1265

Query: 484  QGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLD 543
            +G  L SM+GIDLS NKLTG IP +IG LS +HALNLSHN LTG IP  FS LK IESLD
Sbjct: 1266 KGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLD 1325

Query: 544  LSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPL 602
            LSYN L G IP +L  L  L VF VAYNNLSGKIP+  AQF TF E+SY GNP+LCG  L
Sbjct: 1326 LSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLL 1385

Query: 603  SKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRW 662
             K+C+         E         L D D F ++F  SY +V++G+  VLYIN  WR++W
Sbjct: 1386 RKNCSRAEEEAEIEEGEK-----GLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKKW 1440

Query: 663  FYLVEVCMTSCYYFV 677
            F++++V +T C  FV
Sbjct: 1441 FHVIDVLITCCCNFV 1455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 314/699 (44%), Positives = 419/699 (59%), Gaps = 38/699 (5%)

Query: 15   LMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETE------SHYNSLTPK 68
            L +LIS+E L LSNN  F++P S++P  N S LK F    C E        + ++ L PK
Sbjct: 617  LTNLISLEFLSLSNN-LFEVPTSMKPFMNHSSLKFF----CNENNRLVIEPAAFDHLIPK 671

Query: 69   FQLTSISLSGYIDG--GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLA 126
            FQL   SLS   +      P FLY+Q+ L+  DLSH N++G FP+WLL+NNT L  L L+
Sbjct: 672  FQLVFFSLSKTTEALNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLS 731

Query: 127  NNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS 186
             NS+ G+ ++  H +  +  LD+SNN   G IP +I    P L  L +++N F G IPS 
Sbjct: 732  GNSIVGTLQLQDHPYPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSC 791

Query: 187  FADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQ 246
              +M  L  LD+S+NQL+    E + T  F    L LSNN+L G I +  FN +    L 
Sbjct: 792  LGNMSSLGVLDLSNNQLSTVKLELLTTIWF----LKLSNNNLGGQIPTSMFNSSTSEYLY 847

Query: 247  LDGNKFIGEIPES-LSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP 305
            L  N F G+I +S L+       L LS+N  SG +PRW  N + L  I +  N+ EGPI 
Sbjct: 848  LGDNNFWGQISDSPLNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPIS 907

Query: 306  IEF-CQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTL 364
              F C+L  L+ LDLS N++FG +PSCF+   I  VHLSKN++ G L+   ++S  LVT+
Sbjct: 908  RHFFCKLDQLEYLDLSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKYEFYNSSSLVTM 967

Query: 365  DLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP 424
            DL  N   GSIPN +  L  L+ LLL  N++ GE+PVQLC L+++ ++D+S N LSG +P
Sbjct: 968  DLRDNSFTGSIPNWVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLP 1027

Query: 425  SCLVNTALSGGHHEAVA-------PTSIWCGRASVYISACLPS-----RSAPPMGKEETV 472
            SCL N        +A+        P  I      +     + S     +   P   EE +
Sbjct: 1028 SCLENLTFKESSQKALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVI 1087

Query: 473  QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTT 532
            +FTTKNM Y Y+G+IL+ MSGIDLS N   G IP + G LS I +LNLSHNNLTG+IP T
Sbjct: 1088 EFTTKNMYYGYKGKILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPAT 1147

Query: 533  FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSY 591
            FSNLK+IESLDLSYN  +G IPPQL  + TLEVF VA+NNLSGK P+R  QF TF+E  Y
Sbjct: 1148 FSNLKRIESLDLSYNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCY 1207

Query: 592  EGNPFLCGKPLSKSCNHNGLTT----VTPEASTENQGDSLIDTDSFLITFTVSYGIVIIG 647
            EGNPFLCG PL  +C+   + +      P  + E + D  ID + F I+F+V Y +V++ 
Sbjct: 1208 EGNPFLCGPPLRNNCSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMT 1267

Query: 648  IIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRF 686
            I  VLYINPYWRRRW Y +E C+ +CYYFV  +   R+F
Sbjct: 1268 IAAVLYINPYWRRRWLYFIEDCIDTCYYFVVASF--RKF 1304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 310/701 (44%), Positives = 418/701 (59%), Gaps = 38/701 (5%)

Query: 15   LMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGE--ICAETESHYNSLTPKFQLT 72
            L +L S+E L LSNN  F++PIS++P  N S LK F  E        + +++L PKFQL 
Sbjct: 318  LTNLTSLEFLSLSNN-LFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLIPKFQLV 376

Query: 73   SISLSGYIDG--GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL 130
               LS   +      P FLY+Q+D++  DLSH N++  FP+WLL+NNT L  L L+NNS 
Sbjct: 377  FFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSF 436

Query: 131  FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 190
             G+ ++  H + N+  LD+SNN  +G IP +I    P +  L ++ N F G IPS   ++
Sbjct: 437  VGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNI 496

Query: 191  KMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGN 250
              L+ LD+S+NQL+    E++ T  F    L LSNN+L G + +  FN + L  L L GN
Sbjct: 497  SSLKILDLSNNQLSIVKLEQLTTIWF----LKLSNNNLGGQLPTSVFNSSTLEYLYLHGN 552

Query: 251  KFIGEIPESLSKCY-LLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC 309
             F G+I + L   + +   L LSDN  SG +PRWL N + L  I +  N  +GPI  +FC
Sbjct: 553  NFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFC 612

Query: 310  QLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369
            +L+ L+ LDLS N++ G +PSCFSP  I  VHLS+N++ G L    +++  LVT+DL  N
Sbjct: 613  KLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYGFYNNSSLVTMDLRDN 672

Query: 370  RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
               GS PN I  L  L+ LLL  N+  GE+PVQLC L+++ ++D+S N LSG +PSCL N
Sbjct: 673  NFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGN 732

Query: 430  TALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGK--------------EETVQFT 475
                    + +A   +     S  I         PP+ +              EE ++FT
Sbjct: 733  LTFKESSQKTLA--DLGADVLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFTEEVIEFT 790

Query: 476  TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSN 535
            TKNM Y Y+G+ L+ MSGIDLS N   G IP + G LS I +LNLSHNNLTG+IP TFSN
Sbjct: 791  TKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATFSN 850

Query: 536  LKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSYEGN 594
            LKQIESLDLSYN L+G IPPQL  + TLEVF VA+NNLSG  P+R  QF TF+E  YEGN
Sbjct: 851  LKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYEGN 910

Query: 595  PFLCGKPLSKSCNHNGLTT---------VTPEASTENQGDSLIDTDSFLITFTVSYGIVI 645
            PFLCG PL  +C+   + +           P    E   D  ID + F I F V Y +V+
Sbjct: 911  PFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFGVCYTVVV 970

Query: 646  IGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLVPRRF 686
            + I+ VLYI+PYWRRRW Y +E C+ +CYYFV  +   R+F
Sbjct: 971  MIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVVASF--RKF 1009

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 304/680 (44%), Positives = 412/680 (60%), Gaps = 34/680 (5%)

Query: 15  LMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGE--ICAETESHYNSLTPKFQLT 72
           L +L+S+E L LSNN  F++P S++P  N S LK F  E        + +++L PKFQL 
Sbjct: 293 LTNLVSLEFLSLSNN-LFEVPTSMKPFMNHSSLKFFSSENNRLVTEPAAFDNLIPKFQLV 351

Query: 73  SISLSGYIDGGT--FPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL 130
            +SL    +      P FLY+Q+DL+  DLSH N++G FP+WLL+NNT +  L L++NS 
Sbjct: 352 FLSLLKTTEALNVHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSF 411

Query: 131 FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 190
            G+ ++P H + N+  LD+SNN  +  IP +I   LP L  L + +N F G IPS   ++
Sbjct: 412 VGTLQLPDHPYPNMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNI 471

Query: 191 KMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGN 250
             L  LD+S+NQL+    E + T    L  L LSNN+L G I    FN + L  L L+GN
Sbjct: 472 SSLSVLDLSNNQLSTVKLELLTT----LMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGN 527

Query: 251 KFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF- 308
            F G+I   SL +  +   L LS+N  SG +PRW  N + LE I +  N+ +GPIP +F 
Sbjct: 528 NFCGQILYLSLYEQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFF 587

Query: 309 CQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSY 368
           C+   L+ LDLS N++ G +PSCFSP  I  +HLSKN++ G L    ++S  LVT+DL  
Sbjct: 588 CKFDHLEYLDLSENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYGFYNSSSLVTMDLQD 647

Query: 369 NRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLV 428
           N    SIPN I  L  L+ LLL  N+            +++ ++D+S N LSG +PSCL 
Sbjct: 648 NSFTDSIPNWIGNLSSLSVLLLRANHFD----------EQLSILDVSQNQLSGPLPSCLG 697

Query: 429 NTALSGGHHEAVAPTSIWCGRASV----YISACLPSRSAPPMGK-------EETVQFTTK 477
           N        +A+    I+    S+    Y +   P   +  +GK       EE ++FTTK
Sbjct: 698 NLTFKESSQKAILDFVIFDISRSIEKTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFTTK 757

Query: 478 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLK 537
            MSY Y+G++L  MSGIDLS N   G IP + G LS I +LNLSHNNLTG+IP TFSNLK
Sbjct: 758 KMSYGYKGKVLNYMSGIDLSNNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLK 817

Query: 538 QIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSYEGNPF 596
           QIESLDLSYN L+G IPPQL  + TLEVF VA+NNLSGK P+R  QF TF+E  YEGNPF
Sbjct: 818 QIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPF 877

Query: 597 LCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINP 656
           LCG PL  +C+   +++  P  + E   D  +D + F I+F V Y +V++ I  VLYINP
Sbjct: 878 LCGPPLRNNCSEEAVSS-QPVPNDEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVLYINP 936

Query: 657 YWRRRWFYLVEVCMTSCYYF 676
           YWRRRW + +E C+ +CYYF
Sbjct: 937 YWRRRWLFFIEDCIDTCYYF 956

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 291/634 (45%), Positives = 392/634 (61%), Gaps = 11/634 (1%)

Query: 57   ETESHYN-SLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLE 115
            E E+ Y     P FQL  +SLS     G  P FL +Q  L   DLSH NL+G FPNWLLE
Sbjct: 457  EVETEYPVGWVPLFQLKVLSLSSCKLTGDLPGFLQYQFRLVGVDLSHNNLTGSFPNWLLE 516

Query: 116  NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS 175
            NNT L +LLL NNSL G   +P+  +  + +LD+S+N   G +   +   +P +  LNLS
Sbjct: 517  NNTRLEILLLRNNSLMGQL-LPLGPNTRINSLDISHNQLDGQLQENVAHMIPNITSLNLS 575

Query: 176  RNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSK 235
             N F G IPSS A+++ L+ LD+S N  +GE+P+++      L+IL LSNN   G IFS+
Sbjct: 576  NNGFEGIIPSSIAELRALQILDLSTNNFSGEVPKQLLAAK-DLEILKLSNNKFHGEIFSR 634

Query: 236  KFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM 295
             FNLT L+ L L  N+F G +   +S+   L  L +S+N++SGEIP W+GN++ L  + M
Sbjct: 635  DFNLTGLLCLYLGNNQFTGTLSNVISRISWLWVLDVSNNYMSGEIPSWIGNMTLLRTLVM 694

Query: 296  PNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESII 355
             NNN +G +P E  QL  ++ LD+S N++ G+LPS  S  ++E +HL  N   G +    
Sbjct: 695  GNNNFKGKLPPEISQLQRMEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDF 754

Query: 356  HDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLS 415
             +S  L+TLD+  NRL GSIPN I  L +L  LLL  N + G IP  LC L E+ L+DLS
Sbjct: 755  LNSSNLLTLDIRENRLFGSIPNSISALLKLRILLLRGNLLSGFIPNHLCHLTEISLMDLS 814

Query: 416  HNNLSGHIPSCLVNTALSGGHHE--AVAPTSIWCGRASVYISACLPSRS----APPMGKE 469
            +N+ SG IP C  +        E         W    S  + A    +     +P   ++
Sbjct: 815  NNSFSGPIPRCFGHIRFGETKKEDNVFGQFMYWYELNSDLVYAGYLVKHWEFLSPTYNEK 874

Query: 470  ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI 529
            + V+F TKN   +Y+G IL  MSG+DLSCN LTGEIP ++G LS I ALNLSHN L G+I
Sbjct: 875  DEVEFVTKNRHDFYRGGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSI 934

Query: 530  PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEE 588
            P +FSNL QIESLDLSYN L G+IP +L+ LN LEVF VAYNN SG++PD +AQF TF+E
Sbjct: 935  PKSFSNLSQIESLDLSYNKLGGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDE 994

Query: 589  DSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSL-IDTDSFLITFTVSYGIVIIG 647
             SYEGNPFLCG+ L + CN +  +   P  S E++     I+   F  +FT SY ++++G
Sbjct: 995  RSYEGNPFLCGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLG 1054

Query: 648  IIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNL 681
             + +LYINPYWR RWF  +E C+ SCYYFV D+L
Sbjct: 1055 FVIILYINPYWRHRWFNFIEECIYSCYYFVFDSL 1088

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 301/679 (44%), Positives = 407/679 (59%), Gaps = 24/679 (3%)

Query: 15   LMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTF--DGEICAETESHYNSLTPKFQLT 72
            L +L+S+E + LSNNHF Q+PIS++P  N S L+ F  D          ++ L PKFQL 
Sbjct: 334  LTNLLSLEFISLSNNHF-QVPISMKPFMNHSSLRFFSSDNNRLVTEPMSFHDLIPKFQLV 392

Query: 73   SISLSGYIDGG---TFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
              SLS           P FLY+QHDL+  DLS  +  G FP+WLL+NNT L  L L  NS
Sbjct: 393  FFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENS 452

Query: 130  LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 189
             FG+ ++  H + ++  +D+SNN  HG IP  I      L  L +++N   G IPS   +
Sbjct: 453  FFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLGN 512

Query: 190  MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDG 249
               L  LD+S+NQL+    E+  T    L  L LSNN+L G + +   N + L  L L  
Sbjct: 513  SSSLGVLDLSNNQLSMVELEQFIT----LTFLKLSNNNLGGQLPASMVNSSRLNYLYLSD 568

Query: 250  NKFIGEI---PESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPI 306
            N F G+I   P  +   + +  L LS+N  SG +PRW  NL+ +  I +  N+  GPIP+
Sbjct: 569  NNFWGQISDFPSPIKTIWPV--LDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIPV 626

Query: 307  EFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDL 366
            EFC+L  LK LDLS+N++F ++PSCF+P HI  VHLSKN++ G L    ++S  LVTLDL
Sbjct: 627  EFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYGFYNSSSLVTLDL 686

Query: 367  SYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSC 426
              N   GSI N I  L  L+ LLL  N   GE  VQLC L+++ ++D+S N LSG +PSC
Sbjct: 687  RDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQLSGPLPSC 746

Query: 427  LVNTALSGGHHEAVAPTSIWCGRASVYIS-------ACLPSRSAPPMGKEETVQFTTKNM 479
            L N +    + +A        G   +  +         L   S  P+  EE ++FT K+M
Sbjct: 747  LGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTEEVIEFTAKSM 806

Query: 480  SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQI 539
             Y Y+G+IL+ MSGIDLS NK +G IP ++G LS + ALNLSHNNLTG+IP TFSNLKQI
Sbjct: 807  YYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIPATFSNLKQI 866

Query: 540  ESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSYEGNPFLC 598
            ES DLSYN L G IP +L  + TLEVF VA+NNLSG+ P+R  QF TF+E SYEGNPFLC
Sbjct: 867  ESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQFGTFDESSYEGNPFLC 926

Query: 599  GKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYW 658
            G PL  +C+     ++ P  + + + D  ID + F I+  V Y +V++GI  VLYINPYW
Sbjct: 927  GPPLQNNCSEEESPSL-PMPNDKQEDDGFIDMNFFYISLGVGYIVVVMGIAAVLYINPYW 985

Query: 659  RRRWFYLVEVCMTSCYYFV 677
            R  WF  ++ C+ +C+ F+
Sbjct: 986  RCGWFNFIDYCIDTCFNFL 1004

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.947	0.655	0.4	8.4e-113
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.953	0.608	0.400	1.1e-112
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.920	0.713	0.400	1.5e-108
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.955	0.676	0.386	5.6e-100
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.943	0.697	0.376	5.8e-98
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.907	0.649	0.325	8.9e-70
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.942	0.716	0.321	1.2e-67
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.835	0.505	0.327	6.6e-65
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.862	0.477	0.323	1.6e-64
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.843	0.465	0.322	9.1e-64

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
 Identities = 272/680 (40%), Positives = 378/680 (55%)

Query:     1 MSLTINLLKTSLIS-LMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTF--DGEICAE 57
             + L+ N L  ++ S L +L S+E L L  N+F     SL  L NLSKLK    D +  + 
Sbjct:   287 LDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGF-FSLGLLANLSKLKVLRLDSQSNSL 345

Query:    58 TESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENN 117
                   S  PKFQL  I+L    +    P FL HQ DL + DLS   + G FP+WLLENN
Sbjct:   346 EVEFETSWKPKFQLVVIALRS-CNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENN 404

Query:   118 TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVE-IGTYLPGLMDLNLSR 176
             T L +LLL NNS F SF++P  +H NL  L+VS N F+ H+ ++  G  LP L+ +NL+ 
Sbjct:   405 TKLEVLLLQNNS-FTSFQLPKSAH-NLLFLNVSVNKFN-HLFLQNFGWILPHLVCVNLAY 461

Query:   177 NAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKK 236
             N F G++PSS  +MK +E LD+S N+  G++P R   GC++L IL LS+N L G +F + 
Sbjct:   462 NGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEA 521

Query:   237 FNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMP 296
              N T L  + +D N F G I +       L  L +S+N L+G IP W+G    L  +++ 
Sbjct:   522 ANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLS 581

Query:   297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH 356
             NN LEG IP     +S L++LDLS+N + G +P   S  +   V L +N     L  +I 
Sbjct:   582 NNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNN---NLSGVIP 638

Query:   357 DSPYL--VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 414
             D+  L  + LDL  NRL G++P  I+    ++ LLL  N   G+IP Q C L  ++L+DL
Sbjct:   639 DTLLLNVIVLDLRNNRLSGNLPEFINT-QNISILLLRGNNFTGQIPHQFCSLSNIQLLDL 697

Query:   415 SHNNLSGHIPSCLVNTA--LSGGH--HEAVAPTSIWCGRASVYISACL---PSRSAPPMG 467
             S+N  +G IPSCL NT+  L  G   +    P+     +  VY  + L            
Sbjct:   698 SNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETN 757

Query:   468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTG 527
              +  ++F TK+    Y G  L  + G+DLS N+L+GEIP ++G L  + ALNLSHNNL+G
Sbjct:   758 SQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSG 817

Query:   528 TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFE 587
              I  +FS LK +ESLDLS+N L G IP QL  + +L VF V+YNNLSG +P   QF+TFE
Sbjct:   818 VILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFE 877

Query:   588 EDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYXXXXXX 647
               SY GNP LCGK +  SC  N      P  +     +S +D +SF  +F  +Y      
Sbjct:   878 TQSYFGNPLLCGKSIDISCASNNFH---PTDNGVEADESTVDMESFYWSFVAAYVTILLG 934

Query:   648 XXXXLYINPYWRRRWFYLVE 667
                 L  +  W R WFY+V+
Sbjct:   935 ILASLSFDSPWSRAWFYIVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
 Identities = 279/696 (40%), Positives = 375/696 (53%)

Query:     1 MSLTINLLKTSLISLMH-LIS-MEKLILSNNHFFQIPISLEPLFNLSKLKTFD-----GE 53
             + L+ N L  +L S +  L S +E L L +N+F         L N ++L  F      G 
Sbjct:   386 LDLSNNQLNGNLSSFVSGLPSVLEYLSLLDNNF-DGSFLFNSLVNQTRLTVFKLSSKVGV 444

Query:    54 ICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWL 113
             I  +TES   S  P FQL  + LS    G T   FL HQ DL   DLSH  L+G FP WL
Sbjct:   445 IQVQTES---SWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWL 501

Query:   114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
             ++NNT L  +LL+ NSL    ++PI  H  L  LD+S+N  +  I  +IG   P L  +N
Sbjct:   502 VKNNTRLQTILLSGNSLT-KLQLPILVH-GLQVLDISSNMIYDSIQEDIGMVFPNLRFMN 559

Query:   174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIF 233
              S N F G+IPSS  +MK L+ LD+S N L G++P    +GC+SL++L LSNN LQG IF
Sbjct:   560 FSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIF 619

Query:   234 SKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGI 293
             SK  NLT L+ L LDGN F G + E L K   L  L +SDN  SG +P W+G +S L  +
Sbjct:   620 SKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYL 679

Query:   294 RMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLES 353
              M  N L+GP P    Q   ++++D+S+NS  G++P   +   + ++ L  N+  G +  
Sbjct:   680 YMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPG 738

Query:   354 IIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 413
              +  +  L  LDL  N   G I N ID+  +L  LLL +N  +  IP ++CQL EV L+D
Sbjct:   739 NLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLD 798

Query:   414 LSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS------------- 460
             LSHN   G IPSC   + +S G  +     S+       YI+  LP              
Sbjct:   799 LSHNQFRGPIPSCF--SKMSFGAEQNDRTMSLVADFDFSYITF-LPHCQYGSHLNLDDGV 855

Query:   461 RSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL 520
             R+         V F TK+    YQG IL  M G+DLS N+L+GEIP +IG L  I +LNL
Sbjct:   856 RNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNL 915

Query:   521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR 580
             S N LTG+IP + S LK +ESLDLS N L G IPP L  LN+L    ++YNNLSG+IP +
Sbjct:   916 SSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFK 975

Query:   581 AQFSTFEEDSYEGNPFLCGKPLSKSCNHN------GLTTVTPEASTENQGDSLIDTDSFL 634
                 TF+E SY GN  LCG P +K+C          ++T   E   E +G+ +ID   F 
Sbjct:   976 GHLVTFDERSYIGNAHLCGLPTNKNCISQRVPEPPSVSTHAKEEENEEEGN-VIDMVWFY 1034

Query:   635 ITFTVSYXXXXXXXXXXLYINPYWRRRWFYLVEVCM 670
              T    Y          LYI+  W R WFY V++C+
Sbjct:  1035 WTCAAVYISTSLALFAFLYIDSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 266/664 (40%), Positives = 373/664 (56%)

Query:    20 SMEKLILSNNHFFQIPISLEPLFNLSKLKTFD----GEICAETESHYNSLTPKFQLTSIS 75
             SME L L +N F  +  SL  +  L++LK F       +    E++ +      QL+SI 
Sbjct:   227 SMEYLSLLDNDFEGL-FSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQS-QLSSIM 284

Query:    76 LSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFR 135
             LS + + G  P FL++Q +L+  DLS+  LSG FP WLLENNT L  LLL NNS F +  
Sbjct:   285 LS-HCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNS-FKTLT 342

Query:   136 MPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 195
             +P  + + L  LD+S N F+  +P ++G  L  L  LNLS N F G++PSS A M+ +E 
Sbjct:   343 LP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEF 401

Query:   196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGE 255
             +D+S N  +G++P  + TGC+SL  L LS+N   G I  K  + T+L+ L +D N F G+
Sbjct:   402 MDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGK 461

Query:   256 IPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALK 315
             IP +L    +L  + LS+N L+G IPRWLGN   LE +R+ NN L+G IP     +  L 
Sbjct:   462 IPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLW 520

Query:   316 ILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI 375
             +LDLS N + G+LP   S  +   + L  N + G +   +     L  LDL  N+L G+I
Sbjct:   521 LLDLSGNFLSGSLPLRSSSDYGYILDLHNNNLTGSIPDTLWYG--LRLLDLRNNKLSGNI 578

Query:   376 PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTAL-SG 434
             P      P ++ +LL  N + G+IPV+LC L  VR++D +HN L+  IPSC+ N +  SG
Sbjct:   579 P-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSG 637

Query:   435 GHHEAVA---PTSIWCGRASVYI-----SACLPSRSAPPMGKEETVQ--FTTKNMSYYYQ 484
             GH  A +   P S+      +Y      S  +  R +     +  VQ  F  K     Y 
Sbjct:   638 GHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYM 697

Query:   485 GRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDL 544
                L  M G+DLS N+L+G IP ++G L  + +LNLS N+L+G+IP +FSNL+ IESLDL
Sbjct:   698 RGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDL 757

Query:   545 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK 604
             S+N LHG IP QL +L +L VF V+YNNLSG IP   QF+TF E SY GN  LCG P  +
Sbjct:   758 SFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCGSPTKR 817

Query:   605 SCNHNGLTTVTPEASTENQGDS-LIDTDSFLITFTVSYXXXXXXXXXXLYINPYWRRRWF 663
             SC   G TT++     E+  +S L+D      +   +Y          L  +  WRR WF
Sbjct:   818 SC---GGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWF 874

Query:   664 YLVE 667
              LV+
Sbjct:   875 CLVD 878

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
 Identities = 268/694 (38%), Positives = 368/694 (53%)

Query:     1 MSLTINLLKTSL-ISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTF----DGEIC 55
             + L+ N L  +L  S   L S+E L LS+N+F     SL PL NL+KLK F      E+ 
Sbjct:   289 LDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGF-FSLNPLANLTKLKVFRLSSTSEML 347

Query:    56 -AETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLL 114
               ETES++    PKFQLT  +L  +   G  P FL +Q +L+  DLS   LSG  P WLL
Sbjct:   348 QVETESNW---LPKFQLTVAALP-FCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLL 403

Query:   115 ENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNL 174
             ENN  L +L L NNS F  F++P   H+ L  LD S N   G +P  IG  LP L+ +N 
Sbjct:   404 ENNPELKVLQLKNNS-FTIFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMNG 461

Query:   175 SRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFS 234
             S N F G++PSS  +M  +  LD+S N  +GE+P  + TGCFSL  L LS+NS  G I  
Sbjct:   462 SHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILP 521

Query:   235 KKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG-NLSALEGI 293
              +  LT+L+ L++  N F GEI   L     L     S+N L+G I   +  + S L  +
Sbjct:   522 IQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIML 581

Query:   294 RMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLE 352
              + NN LEG +P     +  L  LDLS N + G LPS   +  +  ++ L  N   G L 
Sbjct:   582 LLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLP 641

Query:   353 SIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 412
               + ++ Y+  LDL  N+L GSIP  ++    +  LLL  N + G IP +LC L  +RL+
Sbjct:   642 VTLLENAYI--LDLRNNKLSGSIPQFVNTGKMIT-LLLRGNNLTGSIPRKLCDLTSIRLL 698

Query:   413 DLSHNNLSGHIPSCL--VNT------ALSGGHHEAVAPTSIWCG--RASVYISACLPSRS 462
             DLS N L+G IP CL  ++T       LSG   E     S+     R++  +   +    
Sbjct:   699 DLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYD 758

Query:   463 APPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSH 522
             +  M  E  ++F  K     + G  L  M G+DLS N+L+G IP ++G LS + ALNLS 
Sbjct:   759 STYMIVE--IEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSR 816

Query:   523 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQ 582
             N L+ +IP  FS LK IESLDLSYN+L G IP QL  L +L VF V++NNLSG IP   Q
Sbjct:   817 NLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQ 876

Query:   583 FSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDT--DSFLITFTV- 639
             F+TF ++SY GNP LCG P  +SC     T        E + D   +   D  ++ +T  
Sbjct:   877 FNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTG 936

Query:   640 -SYXXXXXXXXXXLYINPYWRRRWFYLVEVCMTS 672
              +Y          +  +  WRR W  +V+  + S
Sbjct:   937 STYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
 Identities = 254/674 (37%), Positives = 337/674 (50%)

Query:    13 ISLMHLISMEKLILSNNHFF-QIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQL 71
             + L  L  +  L LS+N     +P S   L +L  L   D     +     N LT    L
Sbjct:   264 LCLGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNF--DGSFSLNPLTNLTNL 321

Query:    72 TSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLF 131
               + +  +      P FL +Q  L+  DLS  NLSG  P WLL NN  L +L L NNS F
Sbjct:   322 KFVVVLRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNS-F 380

Query:   132 GSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMK 191
               F +P   H NL   D S N   G  P ++   LP L+ LN S N F G  P+S  +MK
Sbjct:   381 TIFPIPTMVH-NLQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMK 438

Query:   192 MLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNK 251
              +  LD+S N  +G++P    TGC S+  L LS+N   G    ++ N  +L  L++D N 
Sbjct:   439 NISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNL 498

Query:   252 FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQL 311
             F G I   LS   +L  L +S+N LSG IPRWL     L+ + + NN LEG IP     +
Sbjct:   499 FTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGM 558

Query:   312 SALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRL 371
               L  LDLS N   G LPS         + L  N   G +   +  S  +  LDL  N+L
Sbjct:   559 PFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPDTLLKSVQI--LDLRNNKL 616

Query:   372 HGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTA 431
              GSIP + D    +N LLL  N + G IP +LC L  VRL+DLS N L+G IPSCL N +
Sbjct:   617 SGSIP-QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLS 675

Query:   432 LSGGHHEAVA----PTSIWCG-RASVYISACLPSRSAPPMGK-EET-VQFTTKNMSYYYQ 484
                   +A+A    P+ +       +Y S  L  +        +ET ++F  K     Y 
Sbjct:   676 FGRLQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETEIKFAAKQRYDSYS 735

Query:   485 GR------ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQ 538
             GR      IL  M G+DLS N+L+G IPT++G L  +  LNLSHN+L G+IP++FS L  
Sbjct:   736 GRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLID 795

Query:   539 IESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLC 598
             +ESLDLS+N+L G IP  L  L +L VF V+ NNLSG IP   QF+TFEE+SY GNP LC
Sbjct:   796 VESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLC 855

Query:   599 GKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYXXXXXXXXXXLYINPYW 658
             G P S+SC  N           E    + ID   F  +    Y          +  +  W
Sbjct:   856 GPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPW 915

Query:   659 RRRWFYLVEVCMTS 672
             RR W  +V+  + S
Sbjct:   916 RRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 219/673 (32%), Positives = 336/673 (49%)

Query:    11 SLISLMHLISMEKLILSNNHFFQI--PISLEPLFNLSKLKTFDGEICAETESHYNSLTPK 68
             SL +L +L+ ++  + S +   Q+    S +P F LS +      +  E   H+  L  +
Sbjct:   312 SLANLSNLMVLK--LCSKSSSLQVLSESSWKPKFQLSVIALRSCNM--EKVPHF--LLHQ 365

Query:    69 FQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVML-LLAN 127
               L  + LS     G  P +L   +      L   NL   F   + ++  NL+ L + AN
Sbjct:   366 KDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSFQ--IPKSAHNLLFLDVSAN 423

Query:   128 --NSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 185
               N LF      I  H  L  L+ S N F  ++P  +G  + G+  ++LSRN+F+G++P 
Sbjct:   424 DFNHLFPENIGWIFPH--LRYLNTSKNNFQENLPSSLGN-MNGIQYMDLSRNSFHGNLPR 480

Query:   186 SFAD-MKMLERLDISDNQLTGEI-PERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLM 243
             SF +    +  L +S N+L+GEI PE  +T   ++  L + NN   G I     +L NL 
Sbjct:   481 SFVNGCYSMAILKLSHNKLSGEIFPE--STNFTNILGLFMDNNLFTGKIGQGLRSLINLE 538

Query:   244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
              L +  N   G IP  + +   L  L +SDN L G+IP  L N S+L+ + +  N+L G 
Sbjct:   539 LLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGV 598

Query:   304 IPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVT 363
             IP +    + + +L L +N + GT+P     A++E + L  N+  G++   I+     + 
Sbjct:   599 IPPQHDSRNGVVLL-LQDNKLSGTIPDTLL-ANVEILDLRNNRFSGKIPEFINIQNISIL 656

Query:   364 LDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL-----KEVRLIDLSHNN 418
             L L  N   G IP+++  L  +  L L++N + G IP  L        KE    D     
Sbjct:   657 L-LRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFG- 714

Query:   419 LSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACL---PSRSAPPMGKEETVQFT 475
             +S   PS + N   S   H+  +          +Y  + L   P         +  ++F 
Sbjct:   715 IS--FPSDVFN-GFS--LHQDFSSNK----NGGIYFKSLLTLDPLSMDYKAATQTKIEFA 765

Query:   476 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSN 535
             TK+    Y G  L  + G+DLS N+L+GEIP + G L  + ALNLSHNNL+G IP + S+
Sbjct:   766 TKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISS 825

Query:   536 LKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNP 595
             ++++ES DLS+N L G+IP QL  L +L VFKV++NNLSG IP   QF+TF+ +SY GN 
Sbjct:   826 MEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNR 885

Query:   596 FLCGKPLSKSCNHNGLTTVTPEASTENQGD-SLIDTDSFLITFTVSYXXXXXXXXXXLYI 654
              LCG+P ++SCN+N       EA    + D S+ID  SF ++F  +Y          L  
Sbjct:   886 LLCGQPTNRSCNNNSYE----EADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLSF 941

Query:   655 NPYWRRRWFYLVE 667
             +  W R WFY V+
Sbjct:   942 DSPWSRFWFYKVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 222/690 (32%), Positives = 321/690 (46%)

Query:     5 INLLKTSLISLMHLISMEKLILSNNHFF-QIPISLEPLFNLSKLKTFDGEICAETESHYN 63
             IN +    +   +L  +  L LS+N     IP S   L +L  L   D       E  + 
Sbjct:   230 INFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSF----EGFF- 284

Query:    64 SLTPKFQLTSISLSGYI--DGGTFPKFLYHQHDLKNADLSHLNLSG--QFPNWLLENNTN 119
             SL P   LT + +  +   D     K       L    +  L L    + PN+L+    N
Sbjct:   285 SLNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLEKIPNFLMYQK-N 343

Query:   120 LVMLLLANNSLFGSF-RMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNA 178
             L ++ L+ N + G      + ++  L  L + NN F      ++ T +  L  L+ S N 
Sbjct:   344 LHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSF---TIFQMPTSVHNLQVLDFSENN 400

Query:   179 FNGSIPSSFAD-MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF 237
               G  P +F   +  L  ++ S+N   G  P  M    +++  L LS N+L G +  + F
Sbjct:   401 IGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGE-MYNISFLDLSYNNLSGEL-PQSF 458

Query:   238 --NLTNLMRLQLDGNKFIGE-IPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIR 294
               +  +L  LQL  NKF G  +P   +   L+  L +++N  +G+I   L  L  L  + 
Sbjct:   459 VSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIV-LRINNNLFTGKIGVGLLTLVDLCILD 517

Query:   295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESI 354
             M NN LEG +P        L  LDLS N + G LPS  S  ++  +H   N   G +   
Sbjct:   518 MSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNVLFLH--NNNFTGPIPDT 575

Query:   355 IHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 414
                S  +  LDL  N+L G+IP  +D    +++LLL  N + G IP  LC+  ++RL+DL
Sbjct:   576 FLGS--IQILDLRNNKLSGNIPQFVDT-QDISFLLLRGNSLTGYIPSTLCEFSKMRLLDL 632

Query:   415 SHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYI----SACLPSRSAPPMGK-- 468
             S N L+G IPSC  N +      E +    +     S Y+    S  +            
Sbjct:   633 SDNKLNGFIPSCFNNLSFGLARKEEITNYYVAVALESFYLGFYKSTFVVENFRLDYSNYF 692

Query:   469 EETVQFTTKNMSYYYQGRI------LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSH 522
             E  V+F TK     Y G        L SM G+DLS N+L+G IP ++G L  + ALNLSH
Sbjct:   693 EIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSH 752

Query:   523 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQ 582
             N L+  IP +FS L+ IESLDLSYN+L G IP QL  L +L +F V+YNNLSG IP   Q
Sbjct:   753 NFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQ 812

Query:   583 FSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYX 642
             F+TF+E+SY GNP LCG P   SC     +        E+  +  ID   F  +   +Y 
Sbjct:   813 FNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYV 872

Query:   643 XXXXXXXXXLYINPYWRRRWFYLVEVCMTS 672
                      + ++  WRR W  LV+  + S
Sbjct:   873 TALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 6.6e-65, P = 6.6e-65
 Identities = 200/611 (32%), Positives = 311/611 (50%)

Query:     6 NLLKTSLISLMHLISMEKLILSNNHFF-QIPISLEPLFNLSKLKTFDGEICAETESHYNS 64
             NL  T   SL   + ++ L LS+N     IP SL  L NL  L     ++  +     + 
Sbjct:   116 NLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISK 175

Query:    65 LTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLS-HLNLSGQFPNWLLENNTNLVML 123
              +   +L S+ L   +  G+ P  L     L+   +  +  +SGQ P+ +  + +NL +L
Sbjct:   176 CS---KLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEI-GDCSNLTVL 231

Query:   124 LLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSI 183
              LA  S+ G+    +   + L TL +      G IP ++G     L+DL L  N+ +GSI
Sbjct:   232 GLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGN-CSELVDLFLYENSLSGSI 290

Query:   184 PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLM 243
             P     +  LE+L +  N L G IPE +   C +LK++ LS N L G I S    L+ L 
Sbjct:   291 PREIGQLTKLEQLFLWQNSLVGGIPEEIGN-CSNLKMIDLSLNLLSGSIPSSIGRLSFLE 349

Query:   244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
                +  NKF G IP ++S C  L  L L  N +SG IP  LG L+ L      +N LEG 
Sbjct:   350 EFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGS 409

Query:   304 IPIEFCQLSALKILDLSNNSIFGTLPS-CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLV 362
             IP      + L+ LDLS NS+ GT+PS  F   ++ ++ L  N + G +   I +   LV
Sbjct:   410 IPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLV 469

Query:   363 TLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGH 422
              L L +NR+ G IP+ I  L ++N+L  + N + G++P ++    E+++IDLS+N+L G 
Sbjct:   470 RLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGS 529

Query:   423 IPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYY 482
             +P+ +  ++LSG     V   S     A+ + S  +P+     +   + +   +KN+   
Sbjct:   530 LPNPV--SSLSGLQ---VLDVS-----ANQF-SGKIPASLGRLVSLNKLI--LSKNL--- 573

Query:   483 YQGRILTSM---SGI---DLSCNKLTGEIPTQIGYLSGIH-ALNLSHNNLTGTIPTTFSN 535
             + G I TS+   SG+   DL  N+L+GEIP+++G +  +  ALNLS N LTG IP+  ++
Sbjct:   574 FSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIAS 633

Query:   536 LKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNP 595
             L ++  LDLS+N+L G + P L  +  L    ++YN+ SG +PD   F        EGN 
Sbjct:   634 LNKLSILDLSHNMLEGDLAP-LANIENLVSLNISYNSFSGYLPDNKLFRQLSPQDLEGNK 692

Query:   596 FLCGKPLSKSC 606
              LC      SC
Sbjct:   693 KLCSST-QDSC 702

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.6e-64, P = 1.6e-64
 Identities = 203/627 (32%), Positives = 312/627 (49%)

Query:     1 MSLTINLLKTSLIS-LMHLISMEKLILSNNHFFQ-IPISLEPLFNLSKLKTFDGEICAET 58
             ++L  N L   + S L  +  ++ L L  N     IP SL  L NL  L      +  E 
Sbjct:   244 LNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEI 303

Query:    59 ESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQH-DLKNADLSHLNLSGQFPNWLLENN 117
                + +++   QL  + L+     G+ PK +   + +L+   LS   LSG+ P  L +  
Sbjct:   304 PEEFWNMS---QLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQ 360

Query:   118 TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN 177
             + L  L L+NNSL GS    +     L  L + NN   G +   I   L  L  L L  N
Sbjct:   361 S-LKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISN-LTNLQWLVLYHN 418

Query:   178 AFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF 237
                G +P   + ++ LE L + +N+ +GEIP+ +   C SLK++ +  N  +G I     
Sbjct:   419 NLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGN-CTSLKMIDMFGNHFEGEIPPSIG 477

Query:   238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297
              L  L  L L  N+ +G +P SL  C+ L  L L+DN LSG IP   G L  LE + + N
Sbjct:   478 RLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYN 537

Query:   298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTL-PSCFSPAHIEQVHLSKNKIEGRLESIIH 356
             N+L+G +P     L  L  ++LS+N + GT+ P C S +++    ++ N  E  +   + 
Sbjct:   538 NSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLS-FDVTNNGFEDEIPLELG 596

Query:   357 DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 416
             +S  L  L L  N+L G IP  + ++ +L+ L ++ N + G IP+QL   K++  IDL++
Sbjct:   597 NSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNN 656

Query:   417 NNLSGHIP------SCLVNTALSGGHHEAVAPTSIW-CGRASVY------ISACLPSRSA 463
             N LSG IP      S L    LS        PT ++ C +  V       ++  +P    
Sbjct:   657 NFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIG 716

Query:   464 PPMGKEETVQFTTKNMSYYYQGRI--LTSMSGIDLSCNKLTGEIPTQIGYLSGIH-ALNL 520
               +G    +       S      +  L+ +  + LS N LTGEIP +IG L  +  AL+L
Sbjct:   717 N-LGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDL 775

Query:   521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR 580
             S+NN TG IP+T   L ++E+LDLS+N L G++P  +  + +L    V++NNL GK+  +
Sbjct:   776 SYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--K 833

Query:   581 AQFSTFEEDSYEGNPFLCGKPLSKSCN 607
              QFS +  DS+ GN  LCG PLS+ CN
Sbjct:   834 KQFSRWPADSFLGNTGLCGSPLSR-CN 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 9.1e-64, P = 9.1e-64
 Identities = 197/611 (32%), Positives = 305/611 (49%)

Query:    18 LISMEKLILSNNHFFQ-IPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISL 76
             L+S++ L L  N     IP  L  L NL  L      +       +  +    QL  + L
Sbjct:   263 LVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMN---QLEFLVL 319

Query:    77 SGYIDGGTFPKFLYHQH-DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFR 135
             +     G+ PK +   +  LK   LS   LSG+ P  +  N  +L +L L+NN+L G   
Sbjct:   320 AKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEI-SNCQSLKLLDLSNNTLTGQIP 378

Query:   136 MPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 195
               +     L  L ++NN   G +   I   L  L +  L  N   G +P     +  LE 
Sbjct:   379 DSLFQLVELTNLYLNNNSLEGTLSSSISN-LTNLQEFTLYHNNLEGKVPKEIGFLGKLEI 437

Query:   196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGE 255
             + + +N+ +GE+P  +   C  L+ +    N L G I S    L +L RL L  N+ +G 
Sbjct:   438 MYLYENRFSGEMPVEIGN-CTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGN 496

Query:   256 IPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALK 315
             IP SL  C+ +  + L+DN LSG IP   G L+ALE   + NN+L+G +P     L  L 
Sbjct:   497 IPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLT 556

Query:   316 ILDLSNNSIFGTL-PSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS 374
              ++ S+N   G++ P C S +++    +++N  EG +   +  S  L  L L  N+  G 
Sbjct:   557 RINFSSNKFNGSISPLCGSSSYLS-FDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGR 615

Query:   375 IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSG 434
             IP    ++ +L+ L ++ N + G IPV+L   K++  IDL++N LSG IP+ L    L G
Sbjct:   616 IPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLG 675

Query:   435 ----GHHEAVA--PTSIWC--GRASVYISACLPSRSAPP-MGKEETVQ---FTTKNMSYY 482
                   ++ V   PT I+      ++++     + S P  +G  + +         +S  
Sbjct:   676 ELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGP 735

Query:   483 YQGRI--LTSMSGIDLSCNKLTGEIPTQIGYLSGIH-ALNLSHNNLTGTIPTTFSNLKQI 539
                 I  L+ +  + LS N LTGEIP +IG L  +  AL+LS+NN TG IP+T S L ++
Sbjct:   736 LPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKL 795

Query:   540 ESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCG 599
             ESLDLS+N L G++P Q+  + +L    ++YNNL GK+  + QFS ++ D++ GN  LCG
Sbjct:   796 ESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCG 853

Query:   600 KPLSKSCNHNG 610
              PLS  CN  G
Sbjct:   854 SPLSH-CNRAG 863

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181059 hypothetical protein (781 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	691
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-61
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-50
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-31
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  225 bits (576), Expect = 7e-63
 Identities = 172/509 (33%), Positives = 246/509 (48%), Gaps = 32/509 (6%)

Query: 100 LSHLNLSGQFPNW---LLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHG 156
           LS+ N S     W      N++ +V + L+  ++ G     I     + T+++SNN   G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 157 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCF 216
            IP +I T    L  LNLS N F GSIP        LE LD+S+N L+GEIP  +  G F
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDI--GSF 163

Query: 217 S-LKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 275
           S LK+L L  N L G I +   NLT+L  L L  N+ +G+IP  L +   L  +YL  N+
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 276 LSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLP-SCFSP 334
           LSGEIP  +G L++L  + +  NNL GPIP     L  L+ L L  N + G +P S FS 
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNY 394
             +  + LS N + G +  ++     L  L L  N   G IP  +  LP+L  L L  N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 395 IKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYI 454
             GEIP  L +   + ++DLS NNL+G IP  L +   SG   + +  ++   G     +
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS---SGNLFKLILFSNSLEGEIPKSL 400

Query: 455 SACLPSR----SAPPMGKEETVQFTTKNMSYY-------YQGRI------LTSMSGIDLS 497
            AC   R           E   +FT   + Y+        QGRI      + S+  + L+
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 498 CNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL 557
            NK  G +P   G    +  L+LS N  +G +P    +L ++  L LS N L G+IP +L
Sbjct: 461 RNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Query: 558 IVLNTLEVFKVAYNNLSGKIPDRAQFSTF 586
                L    +++N LSG+IP  A FS  
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIP--ASFSEM 546

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  221 bits (565), Expect = 2e-61
 Identities = 175/557 (31%), Positives = 253/557 (45%), Gaps = 44/557 (7%)

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
           ++ SI LSG    G     ++    ++  +LS+  LSG  P+ +   +++L  L L+NN+
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFH------------------------GHIPVEIGTY 165
             GS  +P  S  NL TLD+SNN                           G IP  +   
Sbjct: 130 FTGS--IPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN- 186

Query: 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN 225
           L  L  L L+ N   G IP     MK L+ + +  N L+GEIP  +  G  SL  L L  
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVY 245

Query: 226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG 285
           N+L G I S   NL NL  L L  NK  G IP S+     L  L LSDN LSGEIP  + 
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 286 NLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAH-IEQVHLSK 344
            L  LE + + +NN  G IP+    L  L++L L +N   G +P      + +  + LS 
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 345 NKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLC 404
           N + G +   +  S  L  L L  N L G IP  +     L  + L  N   GE+P +  
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425

Query: 405 QLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAP 464
           +L  V  +D+S+NNL G I S   +            P+      A       LP     
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDM-----------PSLQMLSLARNKFFGGLPDSFGS 474

Query: 465 PMGKEETVQFTTKNMSYYYQGRI--LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSH 522
              + E +  +    S     ++  L+ +  + LS NKL+GEIP ++     + +L+LSH
Sbjct: 475 K--RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 523 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQ 582
           N L+G IP +FS +  +  LDLS N L G+IP  L  + +L    +++N+L G +P    
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592

Query: 583 FSTFEEDSYEGNPFLCG 599
           F      +  GN  LCG
Sbjct: 593 FLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  188 bits (480), Expect = 2e-50
 Identities = 139/418 (33%), Positives = 201/418 (48%), Gaps = 31/418 (7%)

Query: 13  ISLMHLISMEKLILSNNHFF-QIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQL 71
            SL +L S+E L L++N    QIP  L  + +L  +              YN+L+     
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL-----------GYNNLS----- 225

Query: 72  TSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLF 131
                      G  P  +     L + DL + NL+G  P+  L N  NL  L L  N L 
Sbjct: 226 -----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLS 273

Query: 132 GSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMK 191
           G     I S Q L +LD+S+N   G IP E+   L  L  L+L  N F G IP +   + 
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 192 MLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNK 251
            L+ L +  N+ +GEIP+ +     +L +L LS N+L G I     +  NL +L L  N 
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 252 FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQL 311
             GEIP+SL  C  L  + L DN  SGE+P     L  +  + + NNNL+G I      +
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451

Query: 312 SALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRL 371
            +L++L L+ N  FG LP  F    +E + LS+N+  G +   +     L+ L LS N+L
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Query: 372 HGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
            G IP+ +    +L  L L+HN + G+IP    ++  +  +DLS N LSG IP  L N
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  129 bits (325), Expect = 8e-31
 Identities = 99/315 (31%), Positives = 147/315 (46%), Gaps = 42/315 (13%)

Query: 270 YLSDNHLSGEIPRWLG----NLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325
           YLS+ + S ++  W G    N S +  I +   N+ G I     +L  ++ ++LSNN + 
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 326 GTLPS--CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLP 383
           G +P     + + +  ++LS N   G +       P L TLDLS N L G IPN I    
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS 164

Query: 384 QLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPT 443
            L  L L  N + G+IP  L  L  +  + L+ N L G IP  L       G  +++   
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-------GQMKSLK-- 215

Query: 444 SIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG 503
             W       +S  +P                       Y+   LTS++ +DL  N LTG
Sbjct: 216 --WIYLGYNNLSGEIP-----------------------YEIGGLTSLNHLDLVYNNLTG 250

Query: 504 EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
            IP+ +G L  +  L L  N L+G IP +  +L+++ SLDLS N L G+IP  +I L  L
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310

Query: 564 EVFKVAYNNLSGKIP 578
           E+  +  NN +GKIP
Sbjct: 311 EILHLFSNNFTGKIP 325

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 3e-15
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 35/179 (19%)

Query: 491 MSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550
           + G+ L    L G IP  I  L  + ++NLS N++ G IP +  ++  +E LDLSYN  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 551 GKIPPQLIVLNTLEVFKVAYNNLSGKIP--------DRAQFSTFEEDSYEGNPFLCGKPL 602
           G IP  L  L +L +  +  N+LSG++P         RA F      ++  N  LCG P 
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF------NFTDNAGLCGIP- 532

Query: 603 SKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRR 661
                  GL    P  S   +           I F VS   + + I  +     +W+RR
Sbjct: 533 -------GLRACGPHLSVGAK---------IGIAFGVSVAFLFLVICAMC----WWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 9e-13
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 123 LLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS 182
           L L N  L G     I   ++L ++++S N   G+IP  +G+ +  L  L+LS N+FNGS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGS 481

Query: 183 IPSSFADMKMLERLDISDNQLTGEIP 208
           IP S   +  L  L+++ N L+G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 8e-11
 Identities = 33/86 (38%), Positives = 51/86 (59%)

Query: 245 LQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPI 304
           L LD     G IP  +SK   L  + LS N + G IP  LG++++LE + +  N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 305 PIEFCQLSALKILDLSNNSIFGTLPS 330
           P    QL++L+IL+L+ NS+ G +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 317 LDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI 375
           L L N  + G +P+  S   H++ ++LS N I G +   +     L  LDLSYN  +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 376 PNRIDRLPQLNYLLLAHNYIKGEIPVQL 403
           P  + +L  L  L L  N + G +P  L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGE 206
           L + N    G IP +I + L  L  +NLS N+  G+IP S   +  LE LD+S N   G 
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 207 IPERMATGCFSLKILALSNNSLQGHI 232
           IPE +     SL+IL L+ NSL G +
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 29/91 (31%), Positives = 52/91 (57%)

Query: 337 IEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK 396
           I+ + L    + G + + I    +L +++LS N + G+IP  +  +  L  L L++N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 397 GEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
           G IP  L QL  +R+++L+ N+LSG +P+ L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 80/307 (26%), Positives = 117/307 (38%), Gaps = 34/307 (11%)

Query: 116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS 175
            N   +  L  N +   S    +    NL +LD+ NN     IP  IG     L +L+LS
Sbjct: 90  LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLS 148

Query: 176 RNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSK 235
            N    S+PS   ++  L+ LD+S N L+                           +   
Sbjct: 149 DNKI-ESLPSPLRNLPNLKNLDLSFNDLS--------------------------DLPKL 181

Query: 236 KFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM 295
             NL+NL  L L GNK I ++P  +     L  L LS+N +  E+   L NL  L G+ +
Sbjct: 182 LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239

Query: 296 PNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESII 355
            NN LE  +P     LS L+ LDLSNN I  ++ S  S  ++ ++ LS N +   L  I 
Sbjct: 240 SNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLIA 297

Query: 356 --HDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 413
                  L+   L   +      N I     +       +     I   L  L  +    
Sbjct: 298 LLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNAL 357

Query: 414 LSHNNLS 420
              N   
Sbjct: 358 DESNLNR 364

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 200 DNQ-LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE 258
           DNQ L G IP  ++     L+ + LS NS++G+I     ++T+L  L L  N F G IPE
Sbjct: 426 DNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 259 SLSKCYLLGGLYLSDNHLSGEIPRWLG 285
           SL +   L  L L+ N LSG +P  LG
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 258 ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKIL 317
           +S    + + GL L +  L G IP  +  L  L+ I +  N++ G IP     +++L++L
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471

Query: 318 DLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRL 351
           DLS NS  G++P        +  ++L+ N + GR+
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 8e-07
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 4/203 (1%)

Query: 217 SLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 276
           ++  LAL+ +S    +     +    + L         +  E+L     L  L L+ N L
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 277 SGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAH 336
              I   L  L+ L  + + NNN+    P+     S LK LDLS+N I        +  +
Sbjct: 106 RSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPN 164

Query: 337 IEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK 396
           ++ + LS N +   L  ++ +   L  LDLS N++   +P  I+ L  L  L L++N I 
Sbjct: 165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII 222

Query: 397 GEIPVQLCQLKEVRLIDLSHNNL 419
            E+   L  LK +  ++LS+N L
Sbjct: 223 -ELLSSLSNLKNLSGLELSNNKL 244

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 32/85 (37%), Positives = 43/85 (50%)

Query: 221 LALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEI 280
           L L N  L+G I +    L +L  + L GN   G IP SL     L  L LS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 281 PRWLGNLSALEGIRMPNNNLEGPIP 305
           P  LG L++L  + +  N+L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 25/56 (44%), Positives = 30/56 (53%)

Query: 494 IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 549
           +DLS N+LT         L  +  L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ 202
           NL +LD+SNN     IP      LP L  L+LS N      P +F+ +  L  LD+S N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 203 L 203
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 99  DLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHI 158
            L +  L G  PN  +    +L  + L+ NS+ G+    + S  +L  LD+S N F+G I
Sbjct: 424 GLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 159 PVEIGTYLPGLMDLNLSRNAFNGSIPSS 186
           P  +G  L  L  LNL+ N+ +G +P++
Sbjct: 483 PESLGQ-LTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 7/164 (4%)

Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
           L   TNL  L L NN++     +      NL  LD+S+N     +P  +   LP L +L+
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLR-NLPNLKNLD 169

Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIF 233
           LS N  +  +P   +++  L  LD+S N+++ ++P  +     +L+ L LSNNS+   + 
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS-ALEELDLSNNSII-ELL 225

Query: 234 SKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 277
           S   NL NL  L+L  NK   ++PES+     L  L LS+N +S
Sbjct: 226 SSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNS 227
            L  L+LS N        +F  +  L+ LD+S N LT  I     +G  SL+ L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 228 L 228
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 47/237 (19%), Positives = 75/237 (31%), Gaps = 43/237 (18%)

Query: 8   LKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTP 67
           LK   +SL     + + + S                L +L   D  +  +      SL  
Sbjct: 53  LKELCLSLNETGRIPRGLQSLLQGLT------KGCGLQELDLSDNALGPDGCGVLESLLR 106

Query: 68  KFQLTSISLSGYIDGGTFPKFL-----YHQHDLKNADLSHLNLSGQFPNWLLE---NNTN 119
              L  + L+    G    + L          L+   L    L G     L +    N +
Sbjct: 107 SSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166

Query: 120 LVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAF 179
           L  L LANN +             +  L             E       L  L+L+ N  
Sbjct: 167 LKELNLANNGI---------GDAGIRAL------------AEGLKANCNLEVLDLNNNGL 205

Query: 180 N----GSIPSSFADMKMLERLDISDNQLTG----EIPERMATGCFSLKILALSNNSL 228
                 ++  + A +K LE L++ DN LT      +   + +   SL  L+LS N +
Sbjct: 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 23/59 (38%), Positives = 28/59 (47%)

Query: 361 LVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 419
           L +LDLS NRL          LP L  L L+ N +    P     L  +R +DLS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIP 530
           +TS+  +DLS N   G IP  +G L+ +  LNL+ N+L+G +P
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 269 LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
           L LS+N L+         L  L+ + +  NNL    P  F  L +L+ LDLS N++
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 60/284 (21%), Positives = 92/284 (32%), Gaps = 79/284 (27%)

Query: 183 IPSSFADMKMLERLDISDNQLTGEIPE------RMATGCFSLKILALSNNSLQGHIFSKK 236
           + S+      L+ L +S N+ TG IP       +  T    L+ L LS+N+L        
Sbjct: 43  LASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP------ 95

Query: 237 FNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG-----NLSALE 291
                      DG   +    ESL +   L  L L++N L     R L         ALE
Sbjct: 96  -----------DGCGVL----ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140

Query: 292 GIRMPNNNLEG----PIPIEFCQLSALKILDLSNNSI--FGT-----------------L 328
            + +  N LEG     +         LK L+L+NN I   G                  L
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200

Query: 329 PSCF--------------SPAHIEQVHLSKNKIEGR-----LESIIHDSPYLVTLDLSYN 369
            +                S   +E ++L  N +          +++  +  L+TL LS N
Sbjct: 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

Query: 370 RLH----GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV 409
            +       +   +     L  L L  N    E    L +    
Sbjct: 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE 304

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	691
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN03150	623	hypothetical protein; Provisional	99.56
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
PLN03150	623	hypothetical protein; Provisional	99.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.94
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.91
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.84
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.82
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.63
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.52
KOG4341	483	consensus F-box protein containing LRR [General fu	98.4
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG4341	483	consensus F-box protein containing LRR [General fu	98.13
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.91
PRK15386	426	type III secretion protein GogB; Provisional	97.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.88
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.77
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.7
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.38
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.3
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.95
KOG4308	478	consensus LRR-containing protein [Function unknown	93.4
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.04
KOG4308	478	consensus LRR-containing protein [Function unknown	93.03
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.3
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.03
smart00370	26	LRR Leucine-rich repeats, outliers.	91.03
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.6
smart00370	26	LRR Leucine-rich repeats, outliers.	90.43
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.43
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.97
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.63
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	84.02

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.9e-62  Score=572.31  Aligned_cols=536  Identities=34%  Similarity=0.468  Sum_probs=470.0

Q ss_pred             Ccccccccccc-cccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382            1 MSLTINLLKTS-LISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY   79 (691)
Q Consensus         1 l~l~~n~~~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~   79 (691)
                      |+|++|.++.. +..+..+++|++|+|++|+ ..+..+...+.++++|++|+++++..... ++ .....+|++|++++|
T Consensus        74 L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p-~~~l~~L~~L~Ls~n  150 (968)
T PLN00113         74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGS-IP-RGSIPNLETLDLSNN  150 (968)
T ss_pred             EEecCCCccccCChHHhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccc-cC-ccccCCCCEEECcCC
Confidence            46777777654 6788899999999999998 55555544556889999999988544211 11 123458999999999


Q ss_pred             CCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCc
Q 046382           80 IDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIP  159 (691)
Q Consensus        80 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  159 (691)
                      .+.+..|..++++++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+.++++|++|++++|.+++.+|
T Consensus       151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  229 (968)
T PLN00113        151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP  229 (968)
T ss_pred             cccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence            9988889889999999999999999887888774 889999999999999988888889999999999999999988888


Q ss_pred             hhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCC
Q 046382          160 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNL  239 (691)
Q Consensus       160 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  239 (691)
                      ..+.. +++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..+..+.++
T Consensus       230 ~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l  307 (968)
T PLN00113        230 YEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQL  307 (968)
T ss_pred             hhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCC
Confidence            87765 7899999999999988889999999999999999999987787776 468899999999999988888888889


Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEc
Q 046382          240 TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDL  319 (691)
Q Consensus       240 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  319 (691)
                      ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus       308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  387 (968)
T PLN00113        308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL  387 (968)
T ss_pred             CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence            99999999999998888888899999999999999998888988999999999999999998888888888899999999


Q ss_pred             cCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCccc
Q 046382          320 SNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE  398 (691)
Q Consensus       320 ~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~  398 (691)
                      ++|.+.+..+..+ .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus       388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~  467 (968)
T PLN00113        388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG  467 (968)
T ss_pred             cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence            9999887777655 678999999999999888888889999999999999999988888888899999999999999888


Q ss_pred             CCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecC
Q 046382          399 IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKN  478 (691)
Q Consensus       399 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (691)
                      .|..+ ..++|+.|++++|++++.+|..+..                                                 
T Consensus       468 ~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~-------------------------------------------------  497 (968)
T PLN00113        468 LPDSF-GSKRLENLDLSRNQFSGAVPRKLGS-------------------------------------------------  497 (968)
T ss_pred             cCccc-ccccceEEECcCCccCCccChhhhh-------------------------------------------------
Confidence            77665 4588999999999998877776543                                                 


Q ss_pred             ccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccc
Q 046382          479 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI  558 (691)
Q Consensus       479 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  558 (691)
                               +++|++|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|||++|++++.+|..+.
T Consensus       498 ---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  568 (968)
T PLN00113        498 ---------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG  568 (968)
T ss_pred             ---------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence                     67899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCC
Q 046382          559 VLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       559 ~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      .+++|+.+++++|++++.+|..+++.++....+.|||.+|+.+
T Consensus       569 ~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-57  Score=535.37  Aligned_cols=517  Identities=29%  Similarity=0.450  Sum_probs=448.1

Q ss_pred             CCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccc---cccccCCCCCccccEEEecCCCCCCCcchhhcCCCC
Q 046382           18 LISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAET---ESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHD   94 (691)
Q Consensus        18 l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~   94 (691)
                      ..+++.|+|++|. ..+..+ ..+..+++|+.|+++++...   |..+  +..+.+|++|++++|.+++..|.  +.+++
T Consensus        68 ~~~v~~L~L~~~~-i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~--~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~  141 (968)
T PLN00113         68 SSRVVSIDLSGKN-ISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDI--FTTSSSLRYLNLSNNNFTGSIPR--GSIPN  141 (968)
T ss_pred             CCcEEEEEecCCC-ccccCC-hHHhCCCCCCEEECCCCccCCcCChHH--hccCCCCCEEECcCCccccccCc--cccCC
Confidence            3578899999988 444443 56888999999999985432   2222  22555899999999988877664  45788


Q ss_pred             CCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEc
Q 046382           95 LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNL  174 (691)
Q Consensus        95 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L  174 (691)
                      |++|++++|.+.+.+|..+ +++++|++|++++|.+.+..|..+.++++|++|++++|.+++.+|..+.. +++|++|++
T Consensus       142 L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L  219 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYL  219 (968)
T ss_pred             CCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEEC
Confidence            9999999999887888774 88999999999999988888888899999999999999988788877765 789999999


Q ss_pred             cCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcc
Q 046382          175 SRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIG  254 (691)
Q Consensus       175 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  254 (691)
                      ++|.+.+.+|..++++++|++|++++|.+++.+|..+ ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            9999988889899999999999999999887777765 678999999999999988888888889999999999999888


Q ss_pred             cCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-C
Q 046382          255 EIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-S  333 (691)
Q Consensus       255 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~  333 (691)
                      ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+ .
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~  378 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS  378 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence            888888889999999999999988888889999999999999999988888888889999999999999887776655 6


Q ss_pred             CCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEE
Q 046382          334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID  413 (691)
Q Consensus       334 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  413 (691)
                      .++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..++.|+.|++++|++++..+..+..+++|+.|+
T Consensus       379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  458 (968)
T PLN00113        379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS  458 (968)
T ss_pred             cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence            78899999999999888888888899999999999999888888888999999999999999988888888889999999


Q ss_pred             ccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccce
Q 046382          414 LSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSG  493 (691)
Q Consensus       414 l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  493 (691)
                      +++|++.+.+|..+.                                                           .++|+.
T Consensus       459 L~~n~~~~~~p~~~~-----------------------------------------------------------~~~L~~  479 (968)
T PLN00113        459 LARNKFFGGLPDSFG-----------------------------------------------------------SKRLEN  479 (968)
T ss_pred             CcCceeeeecCcccc-----------------------------------------------------------cccceE
Confidence            999988876665321                                                           367999


Q ss_pred             EEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcc
Q 046382          494 IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL  573 (691)
Q Consensus       494 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  573 (691)
                      ||+++|++++..|..+..+++|+.|+|++|++.+.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|++++|++
T Consensus       480 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  559 (968)
T PLN00113        480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL  559 (968)
T ss_pred             EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCC-CCCCCCcCcCcccCCCCCCCCCC
Q 046382          574 SGKIPD-RAQFSTFEEDSYEGNPFLCGKPL  602 (691)
Q Consensus       574 ~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l  602 (691)
                      ++.+|. ...+..++.+++++|++.+..|.
T Consensus       560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        560 SGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             cccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            999987 45677889999999999886663

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-42  Score=341.07  Aligned_cols=377  Identities=22%  Similarity=0.226  Sum_probs=276.1

Q ss_pred             CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEc
Q 046382          168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL  247 (691)
Q Consensus       168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  247 (691)
                      .-+.|++++|++..+.+..|.++++|+++++..|.++ .+|... ....+|+.|+|.+|.|+....+.+..++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            3455666666666666666666666666666666666 566533 23344666666666666666666666666666666


Q ss_pred             cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCccc
Q 046382          248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGT  327 (691)
Q Consensus       248 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~  327 (691)
                      +.|.++......|..-.++++|+|++|.|+......|..+.+|.+|.++.|+++...+..|..+++|+.|+|..|+|...
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            66666654445555556677777777777666666666777777777777777766666677777777777777777644


Q ss_pred             CCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCC
Q 046382          328 LPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL  406 (691)
Q Consensus       328 ~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  406 (691)
                      -...| ++++|+.|.+..|.|.....+.|..+.++++|+|+.|++...-..|+.+++.|+.|++++|.|..+-++....+
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            23333 67777777777777777777788888888888888888887777788888888888888888887777788888


Q ss_pred             CCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccc
Q 046382          407 KEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGR  486 (691)
Q Consensus       407 ~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (691)
                      ++|++|+|++|+|+...+..+..                                                         
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~---------------------------------------------------------  339 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRV---------------------------------------------------------  339 (873)
T ss_pred             ccceeEeccccccccCChhHHHH---------------------------------------------------------
Confidence            88888888888887544444433                                                         


Q ss_pred             cccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccc---hhhcCCCcCCEEeCCCccccccCCcccccCCCC
Q 046382          487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL  563 (691)
Q Consensus       487 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  563 (691)
                       +..|++|+|++|++...-...|..+++|++|||++|.|+..+.   ..|.+|++|+.|++.+|++..+...+|..++.|
T Consensus       340 -L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L  418 (873)
T KOG4194|consen  340 -LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL  418 (873)
T ss_pred             -HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence             5678888888888887777788888889999999998876554   347788899999999999987777888889999


Q ss_pred             CeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCCCCC
Q 046382          564 EVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK  604 (691)
Q Consensus       564 ~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~~  604 (691)
                      +.|||.+|.|...-|.......++++.+.--.++|+|.+.|
T Consensus       419 E~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  419 EHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             ceecCCCCcceeecccccccchhhhhhhcccceEEeccHHH
Confidence            99999999887766664333367777787788999998876

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-39  Score=323.78  Aligned_cols=393  Identities=23%  Similarity=0.238  Sum_probs=306.6

Q ss_pred             CCEEEccCCCCcccCchHHhhc-CCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEE
Q 046382           95 LKNADLSHLNLSGQFPNWLLEN-NTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN  173 (691)
Q Consensus        95 L~~L~L~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~  173 (691)
                      -+.||.++..+...--..+-+- .+.-+.|++++|++....+..|.++++|+++++.+|.++ .+|..... ..+|+.|+
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~  131 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLD  131 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEe
Confidence            4567777777652110010011 234567999999998888888889999999999999988 88865543 56799999


Q ss_pred             ccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCc
Q 046382          174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFI  253 (691)
Q Consensus       174 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  253 (691)
                      |.+|.|+.+-.+.++.++.|++|||+.|.|+ ++|...|..-.++++|+|++|+|+......|..+.+|..|.|+.|+++
T Consensus       132 L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit  210 (873)
T KOG4194|consen  132 LRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT  210 (873)
T ss_pred             eeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence            9999998888888888999999999999988 888877766678999999999998888888888888999999999988


Q ss_pred             ccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCC-C
Q 046382          254 GEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSC-F  332 (691)
Q Consensus       254 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~  332 (691)
                      ...+..|..+++|+.|+|..|++.-.---.|.++++|+.|.+..|.+.......|..+.++++|+|+.|++...-..+ |
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf  290 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF  290 (873)
T ss_pred             ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence            777778888889999999988886444556788888888888888888777778888888888888888887665554 4


Q ss_pred             CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEE
Q 046382          333 SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI  412 (691)
Q Consensus       333 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  412 (691)
                      +++.|++|++++|.|..+.+..+..+++|++|+|++|+|+...+..|..+..|++|+|++|.+...-...|..+++|++|
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence            78888888888888888888888888888888888888887777788888888888888888876666778888888888


Q ss_pred             EccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccc
Q 046382          413 DLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMS  492 (691)
Q Consensus       413 ~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  492 (691)
                      ||++|.+++.+.+.-.                                                     .|.|  +++|+
T Consensus       371 dLr~N~ls~~IEDaa~-----------------------------------------------------~f~g--l~~Lr  395 (873)
T KOG4194|consen  371 DLRSNELSWCIEDAAV-----------------------------------------------------AFNG--LPSLR  395 (873)
T ss_pred             cCcCCeEEEEEecchh-----------------------------------------------------hhcc--chhhh
Confidence            8888888754443111                                                     1222  67777


Q ss_pred             eEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCC
Q 046382          493 GIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY  546 (691)
Q Consensus       493 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  546 (691)
                      .|++.+|++.......|.++.+|++|||.+|.|..+.|.+|..+ .|++|.++.
T Consensus       396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            78888888775555677777778888888887777777777777 777776654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.3e-41  Score=321.70  Aligned_cols=473  Identities=27%  Similarity=0.345  Sum_probs=330.4

Q ss_pred             CCCCccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCcc
Q 046382           65 LTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNL  144 (691)
Q Consensus        65 ~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  144 (691)
                      ++....++.+.++.|.+.. +...+.++..|.+|++++|+++ .+|+++ +.+..++.|+.++|++ ...|..+..+.+|
T Consensus        41 wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~l-s~lp~~i~s~~~l  116 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKL-SELPEQIGSLISL  116 (565)
T ss_pred             hhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchH-hhccHHHhhhhhh
Confidence            4444477888888887763 3445778888889999998887 777775 7888888889998887 5667778888889


Q ss_pred             CEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcc
Q 046382          145 ATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALS  224 (691)
Q Consensus       145 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  224 (691)
                      +.++.++|.+. ++|..++. +-.++.++..+|++. ..|+.+..+.+|..+++.+|++. ..|..... ++.|++|+..
T Consensus       117 ~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~  191 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCN  191 (565)
T ss_pred             hhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccc
Confidence            99999999888 88888887 568888888888888 67888888888888999999888 66666654 8888899988


Q ss_pred             cccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCc
Q 046382          225 NNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPI  304 (691)
Q Consensus       225 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  304 (691)
                      .|.++ ..|..++.+.+|..|++..|++. ..| .|..|..|++++++.|.+.-...+...+++++..||+++|+++ ..
T Consensus       192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~  267 (565)
T KOG0472|consen  192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV  267 (565)
T ss_pred             hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence            88887 45677888888888899998887 566 6888888899998888887433344447888889999999888 67


Q ss_pred             chhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCC-----CCCccE----EeccCCC-----
Q 046382          305 PIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHD-----SPYLVT----LDLSYNR-----  370 (691)
Q Consensus       305 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-----~~~L~~----L~ls~n~-----  370 (691)
                      |..++.+.+|+.||+++|.|++..+....+ +|+.|-+.+|.+..+-...+..     ++.|+.    =-++...     
T Consensus       268 Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~  346 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET  346 (565)
T ss_pred             chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence            888888888889999999888766666666 8888888888775332211111     011111    0001000     


Q ss_pred             ----CCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCC---CCEEEccCCCCCCCCChhhhhcc-------ccCCC
Q 046382          371 ----LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE---VRLIDLSHNNLSGHIPSCLVNTA-------LSGGH  436 (691)
Q Consensus       371 ----i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~l~~n~l~~~~p~~~~~~~-------l~~~~  436 (691)
                          ..+..| ....+.+.+.|++++-+++ .+|+....-..   .+.++++.|++. ++|..+....       +..+.
T Consensus       347 ~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~  423 (565)
T KOG0472|consen  347 AMTLPSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK  423 (565)
T ss_pred             cCCCCCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence                000011 1122344555666665555 23322221112   455566666654 4444332211       00000


Q ss_pred             CcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCC
Q 046382          437 HEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIH  516 (691)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  516 (691)
                      ...+                                   .      .....+++|+.|+|++|.+. .+|..++.+..|+
T Consensus       424 isfv-----------------------------------~------~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq  461 (565)
T KOG0472|consen  424 ISFV-----------------------------------P------LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQ  461 (565)
T ss_pred             cccc-----------------------------------h------HHHHhhhcceeeecccchhh-hcchhhhhhhhhh
Confidence            0000                                   0      00011577888888888887 7788888888888


Q ss_pred             eEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCC
Q 046382          517 ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPF  596 (691)
Q Consensus       517 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~  596 (691)
                      +||+|+|++. .+|..+..+..++.+-.++|++....|+.+.++.+|..||+.+|.+....|..+.+.+++.+.++|||+
T Consensus       462 ~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  462 TLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             eecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence            8888888887 678877777778877777788886667678888888888888888887777778888888888888887


Q ss_pred             C
Q 046382          597 L  597 (691)
Q Consensus       597 ~  597 (691)
                      .
T Consensus       541 r  541 (565)
T KOG0472|consen  541 R  541 (565)
T ss_pred             C
Confidence            5

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-41  Score=322.75  Aligned_cols=428  Identities=26%  Similarity=0.375  Sum_probs=266.6

Q ss_pred             cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382           70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV  149 (691)
Q Consensus        70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  149 (691)
                      .+.+|+++++.+. ..|++++.+..++.++.++|++. .+|+.+ ..+.+|+.|+.++|.+. ..+..++.+..|..++.
T Consensus        69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~  144 (565)
T KOG0472|consen   69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA  144 (565)
T ss_pred             ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence            4444444444443 34444555555555555555554 455543 45555555555555542 23334455555555555


Q ss_pred             cCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC
Q 046382          150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ  229 (691)
Q Consensus       150 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  229 (691)
                      .+|+++ ..|.+++. +.++..+++.+|+++...|..+ .++.|++||..+|.+. .+|..+ +++.+|..|++.+|++.
T Consensus       145 ~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  145 TNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIR  219 (565)
T ss_pred             cccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhcccc
Confidence            555555 55555444 3455555555555553222222 2555555555555554 555554 34555555555555554


Q ss_pred             ccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhc
Q 046382          230 GHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC  309 (691)
Q Consensus       230 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  309 (691)
                      .. | .|.++..|++++++.|.+.....+...+++++..||+.+|++. ..|+.+.-+.+|+.||+++|.++ ..|..++
T Consensus       220 ~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg  295 (565)
T KOG0472|consen  220 FL-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG  295 (565)
T ss_pred             cC-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc
Confidence            22 2 4445555555555555554222222335555555555555554 44455555555555555555555 3444455


Q ss_pred             CCCCCCEEEccCCcCcc------------------------------------------cCCCCCCCCcccEEEccCCcc
Q 046382          310 QLSALKILDLSNNSIFG------------------------------------------TLPSCFSPAHIEQVHLSKNKI  347 (691)
Q Consensus       310 ~l~~L~~L~L~~n~i~~------------------------------------------~~~~~~~~~~L~~L~l~~n~i  347 (691)
                      ++ +|+.|-+.+|++..                                          ..+......+.+.|++++-++
T Consensus       296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql  374 (565)
T KOG0472|consen  296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL  374 (565)
T ss_pred             cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence            55 55555555554321                                          011111234677788888777


Q ss_pred             ccccccccCCCC--CccEEeccCCCCCCCcchhhcCCCCccE-EecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCC
Q 046382          348 EGRLESIIHDSP--YLVTLDLSYNRLHGSIPNRIDRLPQLNY-LLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP  424 (691)
Q Consensus       348 ~~~~~~~~~~~~--~L~~L~ls~n~i~~~~~~~~~~l~~L~~-L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  424 (691)
                      +..+...|....  -.+..+++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+. .+|
T Consensus       375 t~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP  451 (565)
T KOG0472|consen  375 TLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLP  451 (565)
T ss_pred             ccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcc
Confidence            766665554432  3778899999888 67776666655554 44555555 478888999999999999999886 566


Q ss_pred             hhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeec
Q 046382          425 SCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE  504 (691)
Q Consensus       425 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  504 (691)
                      ..++.                                                          +..|+.||+|+|++. .
T Consensus       452 ~e~~~----------------------------------------------------------lv~Lq~LnlS~NrFr-~  472 (565)
T KOG0472|consen  452 EEMGS----------------------------------------------------------LVRLQTLNLSFNRFR-M  472 (565)
T ss_pred             hhhhh----------------------------------------------------------hhhhheecccccccc-c
Confidence            65443                                                          456999999999999 8


Q ss_pred             cchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccc
Q 046382          505 IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS  574 (691)
Q Consensus       505 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  574 (691)
                      .|.....+..++.+-.++|++....|+.+.+|.+|.+|||.+|.+. .+|..++++++|++|+++||+++
T Consensus       473 lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  473 LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9999999999999999999999888888999999999999999998 77889999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=316.51  Aligned_cols=483  Identities=23%  Similarity=0.293  Sum_probs=373.8

Q ss_pred             CcccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCC
Q 046382            1 MSLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYI   80 (691)
Q Consensus         1 l~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~   80 (691)
                      +|.+...++-+|..+..-..++.|+++.|-+...|  .+...+.-+|+.||+++....+.... +....+|+.|+++.|-
T Consensus         3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             cccccccCcccchhhccHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchhh
Confidence            46778888999988888888999999999754444  45566666688888888544332221 2334488888888877


Q ss_pred             CCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCch
Q 046382           81 DGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPV  160 (691)
Q Consensus        81 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  160 (691)
                      +. ..|....++.+|+++.|.+|.+. .+|..+ ..+++|++|++++|++ +..|..+..+..+..+..++|.....++ 
T Consensus        80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg-  154 (1081)
T KOG0618|consen   80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLG-  154 (1081)
T ss_pred             Hh-hCchhhhhhhcchhheeccchhh-cCchhH-Hhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhc-
Confidence            65 45677778888888888888776 777775 7888888888888887 5566677777888888888882211222 


Q ss_pred             hhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCC
Q 046382          161 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLT  240 (691)
Q Consensus       161 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  240 (691)
                         +  ..++.+++..|.+.+.++..+..++.  .|++..|.+. .+.   ...+++|+.+....|++.....    .-+
T Consensus       155 ---~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~  219 (1081)
T KOG0618|consen  155 ---Q--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGP  219 (1081)
T ss_pred             ---c--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCc
Confidence               1  23778888888888777777777766  7999999876 332   2558889999999888875332    357


Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEcc
Q 046382          241 NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLS  320 (691)
Q Consensus       241 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  320 (691)
                      +|+.|+.++|.+....+.  ....+|+.++++.|+++ ..|+|++.+.+|+.++..+|.+. .+|..+....+|+.|.+.
T Consensus       220 ~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~  295 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAA  295 (1081)
T ss_pred             chheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence            899999999998854443  23458999999999998 56699999999999999999996 778888889999999999


Q ss_pred             CCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCC-ccEEeccCCCCCCCcch-hhcCCCCccEEecccCcCccc
Q 046382          321 NNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPY-LVTLDLSYNRLHGSIPN-RIDRLPQLNYLLLAHNYIKGE  398 (691)
Q Consensus       321 ~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~-L~~L~ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~i~~~  398 (691)
                      .|.+....+......+|+.|++..|++...++..+..... |..|+.+.|++.. .|. .=..++.|+.|++.+|.+++.
T Consensus       296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~  374 (1081)
T KOG0618|consen  296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDS  374 (1081)
T ss_pred             hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCccccc
Confidence            9999866666557899999999999998776655655554 8888888888873 332 223467899999999999987


Q ss_pred             CCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecC
Q 046382          399 IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKN  478 (691)
Q Consensus       399 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (691)
                      .-..+.++.+|+.|+|++|++. .+|.....                                                 
T Consensus       375 c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~-------------------------------------------------  404 (1081)
T KOG0618|consen  375 CFPVLVNFKHLKVLHLSYNRLN-SFPASKLR-------------------------------------------------  404 (1081)
T ss_pred             chhhhccccceeeeeecccccc-cCCHHHHh-------------------------------------------------
Confidence            7778889999999999999996 56653321                                                 


Q ss_pred             ccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccC-Cccc
Q 046382          479 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI-PPQL  557 (691)
Q Consensus       479 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l  557 (691)
                              .+..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|+|.|+++... |...
T Consensus       405 --------kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  405 --------KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             --------chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence                    1678999999999999 88899999999999999999998 667 6889999999999999997543 3333


Q ss_pred             ccCCCCCeEEccCCcc
Q 046382          558 IVLNTLEVFKVAYNNL  573 (691)
Q Consensus       558 ~~l~~L~~L~l~~N~l  573 (691)
                      . -++|++||++||.-
T Consensus       474 p-~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  474 P-SPNLKYLDLSGNTR  488 (1081)
T ss_pred             C-CcccceeeccCCcc
Confidence            3 38999999999973

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1.6e-34  Score=302.54  Aligned_cols=479  Identities=26%  Similarity=0.314  Sum_probs=359.6

Q ss_pred             EEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCc
Q 046382           74 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF  153 (691)
Q Consensus        74 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~  153 (691)
                      +|++++.+. .+|..+..-..++.|+++.|.+- ..|-.+..+.-+|+.|++++|++ +..|..+..+.+|+.|+++.|.
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNY   79 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhh
Confidence            455556554 34555555455888899888765 44444445666799999999987 6778889999999999999999


Q ss_pred             CcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCc
Q 046382          154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIF  233 (691)
Q Consensus       154 i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  233 (691)
                      |. .+|..... +.+|+++.|.+|... ..|..+..+++|+.|+++.|.+. .+|..+ ..+..+..+..++|...    
T Consensus        80 i~-~vp~s~~~-~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~----  150 (1081)
T KOG0618|consen   80 IR-SVPSSCSN-MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKI----  150 (1081)
T ss_pred             Hh-hCchhhhh-hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhh----
Confidence            98 88866665 789999999999887 78999999999999999999998 888877 46888999999999221    


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCC
Q 046382          234 SKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA  313 (691)
Q Consensus       234 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  313 (691)
                      ..++.. .++.+++..|.+.+.++..+..+..  .|++.+|.+.   ...+..+..|+.+....|++....    -.-++
T Consensus       151 ~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~  220 (1081)
T KOG0618|consen  151 QRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPS  220 (1081)
T ss_pred             hhhccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcc
Confidence            112222 2888899999888888777776666  7999999986   234677889999999999887432    23568


Q ss_pred             CCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC
Q 046382          314 LKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN  393 (691)
Q Consensus       314 L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n  393 (691)
                      ++.|+.+.|.+. .....+.+.+|++++++.|++++.+ .++..+.+|+.+++.+|+++ ..|..+...++|+.|.+..|
T Consensus       221 l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  221 LTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYN  297 (1081)
T ss_pred             hheeeeccCcce-eeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhh
Confidence            999999999998 5555667899999999999999766 89999999999999999997 78888889999999999999


Q ss_pred             cCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhcccc-----CCCCcccCCCcccccCcccccccccCCCCCCCCCC
Q 046382          394 YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALS-----GGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGK  468 (691)
Q Consensus       394 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (691)
                      .+. -+|....+++.|++|++..|++. ..|..+......     +.....+..               .|.-.......
T Consensus       298 el~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~---------------lp~~~e~~~~~  360 (1081)
T KOG0618|consen  298 ELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST---------------LPSYEENNHAA  360 (1081)
T ss_pred             hhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc---------------cccccchhhHH
Confidence            998 56667788999999999999996 566543321100     000000000               00000000000


Q ss_pred             cccEEEEecCccc--eeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCC
Q 046382          469 EETVQFTTKNMSY--YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY  546 (691)
Q Consensus       469 ~~~~~~~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  546 (691)
                      ...+.+.++.+..  +.......+|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+..++.|++|...+
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcC
Confidence            1111111111111  111122678999999999998555566888999999999999998 6788899999999999999


Q ss_pred             ccccccCCcccccCCCCCeEEccCCcccccC-CCCCCCCCcCcCcccCCCCC
Q 046382          547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKI-PDRAQFSTFEEDSYEGNPFL  597 (691)
Q Consensus       547 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~-p~~~~~~~~~~~~~~~Np~~  597 (691)
                      |++. ..| .+..++.|+.+|++.|+++... |.....++++.++++||+|.
T Consensus       440 N~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  440 NQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             Ccee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            9998 666 7889999999999999998653 33333489999999999974

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=7.5e-34  Score=284.38  Aligned_cols=369  Identities=26%  Similarity=0.364  Sum_probs=258.4

Q ss_pred             CccCEEEccCCcCc-ccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCE
Q 046382          142 QNLATLDVSNNFFH-GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKI  220 (691)
Q Consensus       142 ~~L~~L~Ls~n~i~-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  220 (691)
                      |-.+-.|+++|.++ +.+|..+-+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHH
Confidence            44455666666665 345555544 566666666666665 56666666666666666666665 444444 44666666


Q ss_pred             EEcccccCCc-cCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCc
Q 046382          221 LALSNNSLQG-HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNN  299 (691)
Q Consensus       221 L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  299 (691)
                      +.+..|++.. -+|..+..+..|..|||++|++. ..|..+....++-.|++++|.|..+....+.+++.|-.|++++|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            6666666542 24455566677777777777765 556666666667777777777765544555666677777777777


Q ss_pred             cCCCcchhhcCCCCCCEEEccCCcCccc-CCCCCCCCcccEEEccCCccc-cccccccCCCCCccEEeccCCCCCCCcch
Q 046382          300 LEGPIPIEFCQLSALKILDLSNNSIFGT-LPSCFSPAHIEQVHLSKNKIE-GRLESIIHDSPYLVTLDLSYNRLHGSIPN  377 (691)
Q Consensus       300 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~ls~n~i~~~~~~  377 (691)
                      +. .+|.....+..|++|+|++|++... ......+++|+.|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. ..|+
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            76 4555566667777777777765421 122224566677777765432 345677788888888888888888 7888


Q ss_pred             hhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccc
Q 046382          378 RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAC  457 (691)
Q Consensus       378 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  457 (691)
                      .+..+++|+.|+|++|+|+ ...-......+|++|++|.|+++ .+|.++..                            
T Consensus       240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK----------------------------  289 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK----------------------------  289 (1255)
T ss_pred             HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh----------------------------
Confidence            8888888888888888887 44445556678888888888887 77777665                            


Q ss_pred             cCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeee-ccchhhhcccCCCeEeCCCCcCCcccchhhcCC
Q 046382          458 LPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNL  536 (691)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  536 (691)
                                                    ++.|+.|++.+|+++- -+|..++.+.+|+++..++|.+. ..|+++..+
T Consensus       290 ------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC  338 (1255)
T KOG0444|consen  290 ------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC  338 (1255)
T ss_pred             ------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh
Confidence                                          5778888888888763 46888888888888888888887 788888888


Q ss_pred             CcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC
Q 046382          537 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       537 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  579 (691)
                      ..|+.|.|++|++. .+|+.+.-++.|++||++.|+=-...|.
T Consensus       339 ~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  339 VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence            88888888888887 6788888888888888888875555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.9e-34  Score=285.08  Aligned_cols=384  Identities=25%  Similarity=0.297  Sum_probs=249.3

Q ss_pred             cccEEEecCCCCC-CCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEE
Q 046382           70 QLTSISLSGYIDG-GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLD  148 (691)
Q Consensus        70 ~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  148 (691)
                      -++-.|+++|.++ +.+|..+..+++++.|.|...++. .+|+.+ +.+.+|++|.+++|++.... ..+..+|.|+.+.
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVI   84 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHh
Confidence            4677888999988 568999999999999999999987 889886 89999999999999985544 4578899999999


Q ss_pred             ccCCcCc-ccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEccccc
Q 046382          149 VSNNFFH-GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNS  227 (691)
Q Consensus       149 Ls~n~i~-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  227 (691)
                      +.+|++. .-+|..++. +..|+.|||++|+++ ..|..+...+++-.|+||+|.|. .||..+|.++..|-.|+|++|+
T Consensus        85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            9999765 357888887 789999999999998 78888988899999999999998 8999888888888888888888


Q ss_pred             CCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchh
Q 046382          228 LQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE  307 (691)
Q Consensus       228 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  307 (691)
                      +.. .|.....+.+|++|+|++|.+....-..+..+++|+.|.+++.+-+                       ...+|.+
T Consensus       162 Le~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-----------------------l~N~Pts  217 (1255)
T KOG0444|consen  162 LEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-----------------------LDNIPTS  217 (1255)
T ss_pred             hhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-----------------------hhcCCCc
Confidence            774 3445556667777777777655333233333444444444443221                       1223444


Q ss_pred             hcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccE
Q 046382          308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNY  387 (691)
Q Consensus       308 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  387 (691)
                      +..+.+|..+|+|.|.+...+...+.+++|+.|++++|+|+... .......+|++|++|.|+++ ..|+.+..++.|+.
T Consensus       218 ld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k  295 (1255)
T KOG0444|consen  218 LDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK  295 (1255)
T ss_pred             hhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence            45555555555555554422222223344444444444443221 11223345555555555555 45555555555555


Q ss_pred             EecccCcCc-ccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCC
Q 046382          388 LLLAHNYIK-GEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPM  466 (691)
Q Consensus       388 L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (691)
                      |++.+|+++ +-+|..++.+.+|+++                                                      
T Consensus       296 Ly~n~NkL~FeGiPSGIGKL~~Levf------------------------------------------------------  321 (1255)
T KOG0444|consen  296 LYANNNKLTFEGIPSGIGKLIQLEVF------------------------------------------------------  321 (1255)
T ss_pred             HHhccCcccccCCccchhhhhhhHHH------------------------------------------------------
Confidence            555555543 1234444444444444                                                      


Q ss_pred             CCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCC
Q 046382          467 GKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY  546 (691)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  546 (691)
                                                  ..++|.+. .+|+.+..+..|+.|.|++|++. .+|+++.-++.|+.||+..
T Consensus       322 ----------------------------~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlre  371 (1255)
T KOG0444|consen  322 ----------------------------HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRE  371 (1255)
T ss_pred             ----------------------------Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccC
Confidence                                        44444444 66667777777777777777776 5677777777777777777


Q ss_pred             ccccccCCcccccCCCCCeEEcc
Q 046382          547 NLLHGKIPPQLIVLNTLEVFKVA  569 (691)
Q Consensus       547 N~l~~~~p~~l~~l~~L~~L~l~  569 (691)
                      |.-.-..|.--..-++|+.-++.
T Consensus       372 NpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  372 NPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             CcCccCCCCcchhhhcceeeecc
Confidence            76543333222222345544443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.95  E-value=1.6e-30  Score=247.76  Aligned_cols=397  Identities=23%  Similarity=0.259  Sum_probs=218.3

Q ss_pred             CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccc-cccccccchhHhhcCCCCCE
Q 046382          142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISD-NQLTGEIPERMATGCFSLKI  220 (691)
Q Consensus       142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~  220 (691)
                      +.-+.++|..|+|+ .+|...|+.+++|+.|||++|.|+.+.|.+|.++++|.+|-+.+ |+|+ .+|...|.++..|+.
T Consensus        67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence            34555666666666 66666666666666666666666666666666666666555554 6666 666666666666666


Q ss_pred             EEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCC------------cchhhhhcCC
Q 046382          221 LALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG------------EIPRWLGNLS  288 (691)
Q Consensus       221 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~------------~~~~~l~~l~  288 (691)
                      |.+.-|++.......+..+++|..|.+.+|.+...-...|..+..++.+.+..|++..            ..|..++...
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            6666666666666666666666666666666654433456666666666666655211            1111222222


Q ss_pred             CCCEEecCCCccCCCcchhhcCC-CCCCEEEccCCcCcccCC-CCC-CCCcccEEEccCCccccccccccCCCCCccEEe
Q 046382          289 ALEGIRMPNNNLEGPIPIEFCQL-SALKILDLSNNSIFGTLP-SCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD  365 (691)
Q Consensus       289 ~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~-~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~  365 (691)
                      -.....+.+.++..+.+..|... ..+.+=-.+.+...+..| ..| .+++|++|++++|+++.+.+.+|.+...+++|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            22222233333332222222111 111110111121221211 223 567777777777777777777777777777777


Q ss_pred             ccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC-----------------CCCChhhh
Q 046382          366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS-----------------GHIPSCLV  428 (691)
Q Consensus       366 ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-----------------~~~p~~~~  428 (691)
                      |..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|++.                 ...|.|-.
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~  384 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQS  384 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCC
Confidence            7777776555556777777777777777777777777777777777777766654                 12333433


Q ss_pred             hccccCCCCcccCCCcccccCcccccccccCCCCCCCCC--CcccEEEEecCccceeccccccccceEEcCCCeeeeccc
Q 046382          429 NTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG--KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP  506 (691)
Q Consensus       429 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  506 (691)
                      ...+.+.....+..+.+.|...  .-.+|.++...++.+  ....+.+..+... .+..+++..-++|++.+|.++ .+|
T Consensus       385 p~~~~~~~~~dv~~~~~~c~~~--ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP~d~telyl~gn~~~-~vp  460 (498)
T KOG4237|consen  385 PGFVRQIPISDVAFGDFRCGGP--EELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIPVDVTELYLDGNAIT-SVP  460 (498)
T ss_pred             CchhccccchhccccccccCCc--cccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCCchhHHHhcccchhc-ccC
Confidence            3334444455555566666521  222333333322221  1222333333322 233344555666666666666 455


Q ss_pred             hhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCc
Q 046382          507 TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN  547 (691)
Q Consensus       507 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  547 (691)
                      ..  .+.+| .+|+|+|+|.......|.++++|.+|-||+|
T Consensus       461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             HH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            44  45555 6666666666555555666666666666554

>PLN03210 Resistant to P

Probab=99.92  E-value=5.2e-24  Score=250.49  Aligned_cols=339  Identities=22%  Similarity=0.257  Sum_probs=201.5

Q ss_pred             CccCCCccCEEEccCCc------CcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchh
Q 046382          137 PIHSHQNLATLDVSNNF------FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPER  210 (691)
Q Consensus       137 ~l~~l~~L~~L~Ls~n~------i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  210 (691)
                      +|.++++|+.|.+..+.      +...+|..+....++|+.|.+.++.+. .+|..| ...+|++|++.+|.+. .++..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            34555555555554332      112344444332334566666555554 444444 3455666666666555 44444


Q ss_pred             HhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCC
Q 046382          211 MATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSAL  290 (691)
Q Consensus       211 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  290 (691)
                      + ..+++|+.|+++++......+ .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|
T Consensus       630 ~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        630 V-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             c-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            3 345566666665543222222 24455666666666655444555556666666666666654433444433 45666


Q ss_pred             CEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccc-------cccccccCCCCCccE
Q 046382          291 EGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIE-------GRLESIIHDSPYLVT  363 (691)
Q Consensus       291 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~-------~~~~~~~~~~~~L~~  363 (691)
                      +.|++++|......|.   ...+|++|++++|.+. .+|....+++|++|.+.++...       ...+.....+++|+.
T Consensus       707 ~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            6666666644333332   1345666666666654 3344445566666666553321       111122234567888


Q ss_pred             EeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCC
Q 046382          364 LDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPT  443 (691)
Q Consensus       364 L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~  443 (691)
                      |++++|.....+|..++++++|+.|++++|...+.+|... .+++|+.|++++|.....+|.                  
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~------------------  843 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD------------------  843 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc------------------
Confidence            8888887766778888888888888888876544666555 678888888888765433322                  


Q ss_pred             cccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCC
Q 046382          444 SIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHN  523 (691)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  523 (691)
                                                                 ..++|++|+|++|.++ .+|..+..+++|+.|+|++|
T Consensus       844 -------------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        844 -------------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             -------------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence                                                       1357888888888887 67888888888888888885


Q ss_pred             cCCcccchhhcCCCcCCEEeCCCcc
Q 046382          524 NLTGTIPTTFSNLKQIESLDLSYNL  548 (691)
Q Consensus       524 ~l~~~~p~~~~~l~~L~~L~Ls~N~  548 (691)
                      +-...+|..+..+++|+.|++++|.
T Consensus       880 ~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        880 NNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCcCccCcccccccCCCeeecCCCc
Confidence            4444567777888888888888874

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=4.3e-23  Score=242.77  Aligned_cols=342  Identities=22%  Similarity=0.248  Sum_probs=268.9

Q ss_pred             CchhhhhCCCCCcEEEccCCc------ccccCchhhhCCC-CCCEEeccccccccccchhHhhcCCCCCEEEcccccCCc
Q 046382          158 IPVEIGTYLPGLMDLNLSRNA------FNGSIPSSFADMK-MLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG  230 (691)
Q Consensus       158 ~~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  230 (691)
                      +....+..+++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+  ...+|+.|++.+|.+..
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence            445556678999999986653      3334677777764 6999999999987 888766  47899999999999874


Q ss_pred             cCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcC
Q 046382          231 HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ  310 (691)
Q Consensus       231 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  310 (691)
                       .+..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ .
T Consensus       626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence             456677899999999998875556664 7889999999999998777889999999999999999986555666655 6


Q ss_pred             CCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCC-------CCcchhhcCCC
Q 046382          311 LSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH-------GSIPNRIDRLP  383 (691)
Q Consensus       311 l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~-------~~~~~~~~~l~  383 (691)
                      +++|+.|++++|...+.++..  ..+|+.|++++|.++..+ ..+ .+++|+.|++.++...       ...+......+
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP-~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFP-SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccccc-ccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            889999999998765555543  568999999999987543 333 5788898888875422       11222233457


Q ss_pred             CccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCC
Q 046382          384 QLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSA  463 (691)
Q Consensus       384 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (691)
                      +|+.|++++|...+.+|..+..+++|+.|++++|...+.+|...                                    
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------  822 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------  822 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence            89999999998877889999999999999999987655555422                                    


Q ss_pred             CCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEe
Q 046382          464 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLD  543 (691)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  543 (691)
                                             .+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|+.|+
T Consensus       823 -----------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~  875 (1153)
T PLN03210        823 -----------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLD  875 (1153)
T ss_pred             -----------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence                                   1678999999998765555543   468999999999998 6788999999999999


Q ss_pred             CCCccccccCCcccccCCCCCeEEccCCc
Q 046382          544 LSYNLLHGKIPPQLIVLNTLEVFKVAYNN  572 (691)
Q Consensus       544 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~  572 (691)
                      +++|.-...+|..+..+++|+.+++++|.
T Consensus       876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        876 MNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCCcCccCcccccccCCCeeecCCCc
Confidence            99965444677788899999999999985

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=5.6e-27  Score=223.63  Aligned_cols=411  Identities=19%  Similarity=0.217  Sum_probs=289.9

Q ss_pred             EEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEccc-
Q 046382          147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN-  225 (691)
Q Consensus       147 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~-  225 (691)
                      .+-++-.++ ++|..+.   +.-.+++|..|+|+.+.+.+|+.+++|+.|||++|.|+ .|....|.++++|..|-+.+ 
T Consensus        51 VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence            344444566 7887764   57889999999999999999999999999999999999 78888889999988887766 


Q ss_pred             ccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC---
Q 046382          226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG---  302 (691)
Q Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~---  302 (691)
                      |+|+......|.++..|+.|.+.-|++.-...+.|..++++..|.+.+|.+.......+..+..++.+.+..|.+..   
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            99998888899999999999999999887777889999999999999999985555588889999999998887431   


Q ss_pred             ---------CcchhhcCCCCCCEEEccCCcCcccCCCCCCCC--cccEEEccCCccccc-cccccCCCCCccEEeccCCC
Q 046382          303 ---------PIPIEFCQLSALKILDLSNNSIFGTLPSCFSPA--HIEQVHLSKNKIEGR-LESIIHDSPYLVTLDLSYNR  370 (691)
Q Consensus       303 ---------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~--~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~ls~n~  370 (691)
                               ..|..++...-.....+.+.++....+..|.+.  ++..-..+.+...++ +...|..+++|++|++++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                     222333333334444445555554444444322  222212223333333 33468999999999999999


Q ss_pred             CCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCc
Q 046382          371 LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRA  450 (691)
Q Consensus       371 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~  450 (691)
                      ++++-+.+|.....++.|.|..|++.......|.++..|+.|++.+|+|+...|..|......  ....+...++-|.+.
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l--~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL--STLNLLSNPFNCNCR  363 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee--eeeehccCcccCccc
Confidence            999999999999999999999999987777889999999999999999997777766554321  122344577888888


Q ss_pred             ccccccccCCCCCCCCC------CcccEEEEecCccceecc--------------ccccccc-eEEcCCCeeeeccchhh
Q 046382          451 SVYISACLPSRSAPPMG------KEETVQFTTKNMSYYYQG--------------RILTSMS-GIDLSCNKLTGEIPTQI  509 (691)
Q Consensus       451 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--------------~~l~~L~-~L~Ls~n~l~~~~~~~~  509 (691)
                      ..++..++.........      ....+.+.......+-.+              ...+-+. ....|+..++ .+|..+
T Consensus       364 l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i  442 (498)
T KOG4237|consen  364 LAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI  442 (498)
T ss_pred             hHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC
Confidence            87766554322211111      111122221111111000              0011121 2234444444 333322


Q ss_pred             hcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCC
Q 046382          510 GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN  571 (691)
Q Consensus       510 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  571 (691)
                        -....+|++.+|.++ .+|..  .+.+| .+|+++|+++...-..|.++++|.+|-+++|
T Consensus       443 --P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  443 --PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             --CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence              124567889999998 66665  66778 8999999998777778888999999988886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.1e-21  Score=210.30  Aligned_cols=193  Identities=22%  Similarity=0.309  Sum_probs=90.1

Q ss_pred             CCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEcc
Q 046382          193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLS  272 (691)
Q Consensus       193 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  272 (691)
                      -..|+++++.++ .+|..+.   ++|+.|++.+|+++.. |.   .+++|++|++++|+++. +|..   .++|+.|+++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            334555555554 4444332   2445555555554432 11   13455555555555542 2321   2345555555


Q ss_pred             CCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccc
Q 046382          273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLE  352 (691)
Q Consensus       273 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~  352 (691)
                      +|.+. .+|..   ..+|+.|++++|.++. +|.   ..++|+.|++++|.+.+. +.  .+.+|+.|++++|.+++++ 
T Consensus       271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~--lp~~L~~L~Ls~N~L~~LP-  338 (788)
T PRK15387        271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA--LPSELCKLWAYNNQLTSLP-  338 (788)
T ss_pred             CCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CC--CcccccccccccCcccccc-
Confidence            55554 22221   1345555555555552 222   124566666666655532 22  1234555555555555322 


Q ss_pred             cccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382          353 SIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS  420 (691)
Q Consensus       353 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  420 (691)
                      .   ...+|+.|++++|++++ +|..   .++|+.|++++|++.+ +|..   ..+|+.|++++|+++
T Consensus       339 ~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt  395 (788)
T PRK15387        339 T---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT  395 (788)
T ss_pred             c---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence            1   11355666666666652 3321   2345555666666552 3322   234556666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=9.3e-21  Score=206.54  Aligned_cols=263  Identities=24%  Similarity=0.322  Sum_probs=155.7

Q ss_pred             CcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEcc
Q 046382          169 LMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLD  248 (691)
Q Consensus       169 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  248 (691)
                      -..|+++++.++ .+|..+.  ++|+.|++.+|+++ .+|.    ..++|++|++++|+++.. |.   ..++|+.|+++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence            344555555554 3444333  24555555555555 4443    134555555555555532 21   13455566666


Q ss_pred             CCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccC
Q 046382          249 GNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTL  328 (691)
Q Consensus       249 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~  328 (691)
                      +|.+. .+|..   ...|+.|++++|+++. +|.   ..++|+.|++++|.+.+. |..   ..+|+.|++++|.+.+ +
T Consensus       271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             CCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-c
Confidence            65554 22221   2345566666666652 332   235666677777666642 321   2346667777777664 2


Q ss_pred             CCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCC
Q 046382          329 PSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE  408 (691)
Q Consensus       329 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  408 (691)
                      |.  .+.+|+.|++++|+++++++    ..++|+.|++++|+++. +|..   ..+|+.|++++|++++ +|..   .++
T Consensus       338 P~--lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~  403 (788)
T PRK15387        338 PT--LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE  403 (788)
T ss_pred             cc--cccccceEecCCCccCCCCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence            32  13567778888777775432    13567788888888873 5543   3578889999998884 4433   357


Q ss_pred             CCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccc
Q 046382          409 VRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRIL  488 (691)
Q Consensus       409 L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  488 (691)
                      |+.|++++|+++ .+|..                                                             +
T Consensus       404 L~~LdLS~N~Ls-sIP~l-------------------------------------------------------------~  421 (788)
T PRK15387        404 LKELMVSGNRLT-SLPML-------------------------------------------------------------P  421 (788)
T ss_pred             CCEEEccCCcCC-CCCcc-------------------------------------------------------------h
Confidence            888888888886 34431                                                             2


Q ss_pred             cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhh
Q 046382          489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTF  533 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  533 (691)
                      .+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus       422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            34667788888887 677777778888888888888877666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=6.9e-19  Score=193.47  Aligned_cols=14  Identities=21%  Similarity=0.271  Sum_probs=6.5

Q ss_pred             CcCCEEeCCCcccc
Q 046382          537 KQIESLDLSYNLLH  550 (691)
Q Consensus       537 ~~L~~L~Ls~N~l~  550 (691)
                      +.+..|++.+|+++
T Consensus       415 ~~l~~L~L~~Npls  428 (754)
T PRK15370        415 PQPTRIIVEYNPFS  428 (754)
T ss_pred             CCccEEEeeCCCcc
Confidence            44444444444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.4e-18  Score=190.94  Aligned_cols=117  Identities=25%  Similarity=0.420  Sum_probs=51.4

Q ss_pred             CCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEc
Q 046382           95 LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNL  174 (691)
Q Consensus        95 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L  174 (691)
                      ...|+++++.++ .+|..+   .++|+.|++++|++... |..+.  ++|++|++++|.++ .+|..+.   ++|+.|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence            445555555444 344322   23455555555554322 22221  34555555555554 4444332   24455555


Q ss_pred             cCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC
Q 046382          175 SRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ  229 (691)
Q Consensus       175 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  229 (691)
                      ++|.+. .+|..+.  ++|++|++++|+++ .+|..+   .++|+.|++++|.++
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIR  296 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCccc
Confidence            555544 3333332  24555555555544 344332   124445555554444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=2.6e-19  Score=183.68  Aligned_cols=38  Identities=37%  Similarity=0.418  Sum_probs=16.4

Q ss_pred             CCccEEeccCCCCCCC----cchhhcCCCCccEEecccCcCc
Q 046382          359 PYLVTLDLSYNRLHGS----IPNRIDRLPQLNYLLLAHNYIK  396 (691)
Q Consensus       359 ~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~  396 (691)
                      ++|+.|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            4455555555544421    1222333444444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.2e-18  Score=178.65  Aligned_cols=178  Identities=24%  Similarity=0.232  Sum_probs=89.0

Q ss_pred             EEEccCCccc-ccCCcCccCCCccCEEEccCCcCccc----CchhhhhCCCCCcEEEccCCcccc------cCchhhhCC
Q 046382          122 MLLLANNSLF-GSFRMPIHSHQNLATLDVSNNFFHGH----IPVEIGTYLPGLMDLNLSRNAFNG------SIPSSFADM  190 (691)
Q Consensus       122 ~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~~l~~L~~L~L~~n~i~~------~~~~~~~~l  190 (691)
                      .|+|.++.+. ......+..+++|++|+++++.+++.    ++..+. ..+++++++++++.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            4566666664 22333455566677888887776432    222222 24567777777776651      223455666


Q ss_pred             CCCCEEeccccccccccchhHhhcCCC---CCEEEcccccCCccC----cccccCC-CCCCEEEccCCcCccc----CCc
Q 046382          191 KMLERLDISDNQLTGEIPERMATGCFS---LKILALSNNSLQGHI----FSKKFNL-TNLMRLQLDGNKFIGE----IPE  258 (691)
Q Consensus       191 ~~L~~L~L~~n~l~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~----~~~~~~l-~~L~~L~L~~n~l~~~----~~~  258 (691)
                      ++|++|++++|.+.+..+..+ ..+.+   |++|++++|++.+..    ...+..+ ++|+.|++++|.+++.    .+.
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            677777777776653333322 22333   666666666655211    1122333 5555555555555421    122


Q ss_pred             cccCCCCCCEEEccCCcCCCc----chhhhhcCCCCCEEecCCCccC
Q 046382          259 SLSKCYLLGGLYLSDNHLSGE----IPRWLGNLSALEGIRMPNNNLE  301 (691)
Q Consensus       259 ~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~  301 (691)
                      .+..++.|+.|++++|.+++.    ++..+..+++|+.|++++|.+.
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            233444555555555554421    1122233344555555554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3.6e-19  Score=150.98  Aligned_cols=166  Identities=27%  Similarity=0.498  Sum_probs=114.4

Q ss_pred             cCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCC
Q 046382          327 TLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL  406 (691)
Q Consensus       327 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  406 (691)
                      .++..|.+..++.|.+++|+++...| .++.+.+|+.|++++|++. ..|..++.++.|+.|+++-|++. ..|..|+.+
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            34556667778888888888875444 5677888888888888888 67777888888888888888887 778888888


Q ss_pred             CCCCEEEccCCCCCC-CCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecc
Q 046382          407 KEVRLIDLSHNNLSG-HIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQG  485 (691)
Q Consensus       407 ~~L~~L~l~~n~l~~-~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (691)
                      +.|+.||+++|++.. .+|..|..                                                        
T Consensus       102 p~levldltynnl~e~~lpgnff~--------------------------------------------------------  125 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFY--------------------------------------------------------  125 (264)
T ss_pred             chhhhhhccccccccccCCcchhH--------------------------------------------------------
Confidence            888888888888762 12221111                                                        


Q ss_pred             ccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcc
Q 046382          486 RILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ  556 (691)
Q Consensus       486 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  556 (691)
                        ++.|+-|+|++|.+. .+|..++.+++|+.|.+..|.+. ..|..++.++.|++|++.+|+++ .+|..
T Consensus       126 --m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppe  191 (264)
T KOG0617|consen  126 --MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPE  191 (264)
T ss_pred             --HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChh
Confidence              455666666666665 55666666666666666666665 45666666666666666666665 44433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=3e-17  Score=139.33  Aligned_cols=153  Identities=30%  Similarity=0.456  Sum_probs=74.4

Q ss_pred             CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEE
Q 046382          142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL  221 (691)
Q Consensus       142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  221 (691)
                      .+++.|.+|+|+++ .+|..+.. +.+|+.|++++|+|. ..|.+++.+++|+.|+++-|++. .+|.++ +.++.|+.|
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~levl  107 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALEVL  107 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhhhh
Confidence            34444444444444 44444443 344555555555444 34444444555555555544444 444443 334444444


Q ss_pred             EcccccCCc-cCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCcc
Q 046382          222 ALSNNSLQG-HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNL  300 (691)
Q Consensus       222 ~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  300 (691)
                      |+.+|.+.. ..|..|+.++.|+.|++++|.+. .+|..++++++|+.|.+.+|.+- ..|..++.++.|++|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            444444432 23344444555555555555544 44444555555555555555544 3455555555555555555555


Q ss_pred             C
Q 046382          301 E  301 (691)
Q Consensus       301 ~  301 (691)
                      +
T Consensus       186 ~  186 (264)
T KOG0617|consen  186 T  186 (264)
T ss_pred             e
Confidence            4

>PLN03150 hypothetical protein; Provisional

Probab=99.56  E-value=9.6e-15  Score=160.62  Aligned_cols=118  Identities=33%  Similarity=0.609  Sum_probs=106.2

Q ss_pred             ccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEcc
Q 046382          490 SMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  569 (691)
Q Consensus       490 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  569 (691)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|||++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCC--CCCCCcCcCcccCCCCCCCCCCCCCCC
Q 046382          570 YNNLSGKIPDR--AQFSTFEEDSYEGNPFLCGKPLSKSCN  607 (691)
Q Consensus       570 ~N~l~~~~p~~--~~~~~~~~~~~~~Np~~c~~~l~~~c~  607 (691)
                      +|+++|.+|..  ..+.....+++.+|+++|+++-...|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999983  223455677899999999876544553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=2.2e-13  Score=137.34  Aligned_cols=83  Identities=28%  Similarity=0.574  Sum_probs=41.0

Q ss_pred             cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEc
Q 046382          489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKV  568 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  568 (691)
                      +.|..||.+.|.+. .+|..++.+.+|+.|++..|++. ..|..+..| .|..||+|+|+++ .+|-.|..|..|++|.|
T Consensus       166 ~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  166 PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence            34444555555544 44445555555555555555554 233333322 2445555555554 44555555555555555


Q ss_pred             cCCcccc
Q 046382          569 AYNNLSG  575 (691)
Q Consensus       569 ~~N~l~~  575 (691)
                      .+|+++.
T Consensus       242 enNPLqS  248 (722)
T KOG0532|consen  242 ENNPLQS  248 (722)
T ss_pred             ccCCCCC
Confidence            5555543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=1.4e-11  Score=130.11  Aligned_cols=197  Identities=30%  Similarity=0.473  Sum_probs=110.4

Q ss_pred             EEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCC-CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcC
Q 046382          317 LDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDS-PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYI  395 (691)
Q Consensus       317 L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i  395 (691)
                      +++..+.+..........+.++.|++.+|.++.+.+ ..... ++|+.|++++|.+. .+|..++.+++|+.|++++|++
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence            444444443233333333445555555555543322 22223 25666666666665 3444556666666666666666


Q ss_pred             cccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEE
Q 046382          396 KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFT  475 (691)
Q Consensus       396 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (691)
                      . .++......++|+.|++++|++. .+|....                                               
T Consensus       176 ~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-----------------------------------------------  206 (394)
T COG4886         176 S-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-----------------------------------------------  206 (394)
T ss_pred             h-hhhhhhhhhhhhhheeccCCccc-cCchhhh-----------------------------------------------
Confidence            6 33333335666666666666665 3332110                                               


Q ss_pred             ecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCc
Q 046382          476 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP  555 (691)
Q Consensus       476 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  555 (691)
                                 .+..|++|++++|.+. ..+..+..+.++..+.+++|++. ..+..++.+++++.|++++|.++...+ 
T Consensus       207 -----------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-  272 (394)
T COG4886         207 -----------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-  272 (394)
T ss_pred             -----------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc-
Confidence                       0334666666666543 45556666667777777777766 335566667777777777777764433 


Q ss_pred             ccccCCCCCeEEccCCcccccCCC
Q 046382          556 QLIVLNTLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       556 ~l~~l~~L~~L~l~~N~l~~~~p~  579 (691)
                       +..+.+++.|++++|.++..+|.
T Consensus       273 -~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         273 -LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             -ccccCccCEEeccCccccccchh
Confidence             66667777777777777665554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=5.2e-12  Score=117.49  Aligned_cols=86  Identities=28%  Similarity=0.293  Sum_probs=59.6

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccC-CcccccCCCCCeE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI-PPQLIVLNTLEVF  566 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L  566 (691)
                      +++|+.||||+|.++ .+...=..+-+.++|+|++|.|..  -.+++++-+|..||+++|+|...- -.+++++|.|+.+
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            566777777777766 444444556777788888887762  245777778888888888876321 2457778888888


Q ss_pred             EccCCccccc
Q 046382          567 KVAYNNLSGK  576 (691)
Q Consensus       567 ~l~~N~l~~~  576 (691)
                      .+.+|++.+.
T Consensus       405 ~L~~NPl~~~  414 (490)
T KOG1259|consen  405 RLTGNPLAGS  414 (490)
T ss_pred             hhcCCCcccc
Confidence            8888888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.4e-11  Score=120.69  Aligned_cols=87  Identities=26%  Similarity=0.219  Sum_probs=42.8

Q ss_pred             CCCCEEEcccccCCccC-cccccCCCCCCEEEccCCcCcccC-Ccc-----ccCCCCCCEEEccCCcCCCc-chhhhhcC
Q 046382          216 FSLKILALSNNSLQGHI-FSKKFNLTNLMRLQLDGNKFIGEI-PES-----LSKCYLLGGLYLSDNHLSGE-IPRWLGNL  287 (691)
Q Consensus       216 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~~~~~-~~~~l~~l  287 (691)
                      ..|+.|+|++|.+-... ....+.++.|..|+++.+.+...- |+.     ...+++|+.|++..|++.+. ....+..+
T Consensus       246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l  325 (505)
T KOG3207|consen  246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL  325 (505)
T ss_pred             hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence            34445555544443211 122334555555555555544321 111     23456677777777766421 12234455


Q ss_pred             CCCCEEecCCCccCC
Q 046382          288 SALEGIRMPNNNLEG  302 (691)
Q Consensus       288 ~~L~~L~l~~n~~~~  302 (691)
                      ++|+.|.+..|.+..
T Consensus       326 ~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  326 ENLKHLRITLNYLNK  340 (505)
T ss_pred             chhhhhhcccccccc
Confidence            667777777776653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=1.2e-11  Score=118.06  Aligned_cols=134  Identities=21%  Similarity=0.199  Sum_probs=62.3

Q ss_pred             CCCCEEeccccccccccc---hhHhhcCCCCCEEEcccccCCcc----CcccccCCCCCCEEEccCCcCccc----CCcc
Q 046382          191 KMLERLDISDNQLTGEIP---ERMATGCFSLKILALSNNSLQGH----IFSKKFNLTNLMRLQLDGNKFIGE----IPES  259 (691)
Q Consensus       191 ~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~  259 (691)
                      +.|+++....|++.+...   ...+...+.|+.+.+..|.|...    ....+..+++|+.|||.+|.++..    +...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            456666666665542111   12234445566666666555421    123344556666666666655432    1233


Q ss_pred             ccCCCCCCEEEccCCcCCCcchhhh-----hcCCCCCEEecCCCccCCCc----chhhcCCCCCCEEEccCCcC
Q 046382          260 LSKCYLLGGLYLSDNHLSGEIPRWL-----GNLSALEGIRMPNNNLEGPI----PIEFCQLSALKILDLSNNSI  324 (691)
Q Consensus       260 ~~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~i  324 (691)
                      ++.++.|+.|++++|.+.......+     ...|+|+.|.+.+|.++...    .......+.|+.|+|++|++
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4445555555555555543332222     12455555555555554211    11222344455555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=7.1e-11  Score=124.68  Aligned_cols=198  Identities=36%  Similarity=0.481  Sum_probs=105.4

Q ss_pred             EEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCC-CCcEEEccCCcccccCchhhhCCCCCCEEeccc
Q 046382          122 MLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERLDISD  200 (691)
Q Consensus       122 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~  200 (691)
                      .++++.+.+... ...+...+.++.|++.+|.++ .++..... .. +|++|++++|.+. .+|..++.+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            355555544211 112333455666666666666 55554442 32 5666666666665 3444566666666666666


Q ss_pred             cccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcc
Q 046382          201 NQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEI  280 (691)
Q Consensus       201 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  280 (691)
                      |+++ .+|... ...+.|+.|++++|++... +........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..
T Consensus       173 N~l~-~l~~~~-~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~  247 (394)
T COG4886         173 NDLS-DLPKLL-SNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL  247 (394)
T ss_pred             chhh-hhhhhh-hhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence            6666 555433 1355666666666666532 222223344666666666432 33344555555666666666554 22


Q ss_pred             hhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCC
Q 046382          281 PRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPS  330 (691)
Q Consensus       281 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  330 (691)
                      +..++.++.++.|++++|.++....  +..+.+++.|++++|.+....+.
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            4455555666666666666653322  55566666666666665544433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=7.7e-11  Score=105.84  Aligned_cols=127  Identities=26%  Similarity=0.262  Sum_probs=43.7

Q ss_pred             CCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCc
Q 046382           91 HQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLM  170 (691)
Q Consensus        91 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~  170 (691)
                      +..++++|+|++|.|+ .+.. +-..+.+|+.|++++|.+....  .+..+++|++|++++|+|+ .+...+...+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie~-L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIEN-LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             --------------------S---TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-cccc-hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            4445777888888776 3432 2124677888888888776543  3667788888888888887 56554444467888


Q ss_pred             EEEccCCccccc-CchhhhCCCCCCEEeccccccccccch---hHhhcCCCCCEEEc
Q 046382          171 DLNLSRNAFNGS-IPSSFADMKMLERLDISDNQLTGEIPE---RMATGCFSLKILAL  223 (691)
Q Consensus       171 ~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l  223 (691)
                      +|++++|+|... .-..++.+++|+.|++.+|.++ ..+.   .+...+|+|+.||-
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence            888888877642 1245667777888888877776 2222   22344666666544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=1e-11  Score=118.52  Aligned_cols=247  Identities=22%  Similarity=0.156  Sum_probs=138.5

Q ss_pred             ccccCCCCCCEEeCCCCCCccccCC--cccccCCCCCcEEeCCC--CccccccccCCCCCccccEEEecCCCCCCCcchh
Q 046382           13 ISLMHLISMEKLILSNNHFFQIPIS--LEPLFNLSKLKTFDGEI--CAETESHYNSLTPKFQLTSISLSGYIDGGTFPKF   88 (691)
Q Consensus        13 ~~~~~l~~L~~L~Ls~~~~~~~~~~--~~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~   88 (691)
                      +.+..+..+++|+||+|.+.....-  ...+...+.|+..+++.  .......++..+                ..+...
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L----------------~~l~~a   87 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL----------------KMLSKA   87 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH----------------HHHHHH
Confidence            4667888999999999984332211  24567778888888887  222111111100                011122


Q ss_pred             hcCCCCCCEEEccCCCCcccCch---HHhhcCCCCCEEEccCCcccccC-------------CcCccCCCccCEEEccCC
Q 046382           89 LYHQHDLKNADLSHLNLSGQFPN---WLLENNTNLVMLLLANNSLFGSF-------------RMPIHSHQNLATLDVSNN  152 (691)
Q Consensus        89 l~~l~~L~~L~L~~~~~~~~~~~---~~~~~l~~L~~L~L~~n~~~~~~-------------~~~l~~l~~L~~L~Ls~n  152 (691)
                      +..+++|++||||.|-+.-..+.   .++..+..|++|.|.+|.+.-..             .....+-+.|+++...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            33444455555555544222111   12344555555555555441110             111334567777777777


Q ss_pred             cCcccCch----hhhhCCCCCcEEEccCCcccc----cCchhhhCCCCCCEEeccccccccccchh---HhhcCCCCCEE
Q 046382          153 FFHGHIPV----EIGTYLPGLMDLNLSRNAFNG----SIPSSFADMKMLERLDISDNQLTGEIPER---MATGCFSLKIL  221 (691)
Q Consensus       153 ~i~~~~~~----~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L  221 (691)
                      ++. ..+.    ..++..+.|+.+.+..|.|..    .....+..+++|+.|||.+|-++......   .+..+++|+.|
T Consensus       168 rle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  168 RLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             ccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            765 2221    233445677777777777652    22345677788888888888766322222   23446677788


Q ss_pred             EcccccCCccCcccc-----cCCCCCCEEEccCCcCcccC----CccccCCCCCCEEEccCCcC
Q 046382          222 ALSNNSLQGHIFSKK-----FNLTNLMRLQLDGNKFIGEI----PESLSKCYLLGGLYLSDNHL  276 (691)
Q Consensus       222 ~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~  276 (691)
                      ++++|.+.......+     ...|+|+.|.+.+|.++..-    ...+...+.|..|++++|.+
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            888887765433332     13678888888888776421    22334467788888888888

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=1.5e-12  Score=131.37  Aligned_cols=174  Identities=30%  Similarity=0.499  Sum_probs=149.2

Q ss_pred             CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCc
Q 046382          359 PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHE  438 (691)
Q Consensus       359 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~  438 (691)
                      .--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++.+..|+.+|++.|+++ .+|..++.+        
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l--------  143 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL--------  143 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC--------
Confidence            33456788889888 78888888889999999999998 78889999999999999999997 566554432        


Q ss_pred             ccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeE
Q 046382          439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHAL  518 (691)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  518 (691)
                                                                         -|+.|-+++|+++ .+|..++....|..|
T Consensus       144 ---------------------------------------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~l  171 (722)
T KOG0532|consen  144 ---------------------------------------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHL  171 (722)
T ss_pred             ---------------------------------------------------cceeEEEecCccc-cCCcccccchhHHHh
Confidence                                                               3778899999999 889899999999999


Q ss_pred             eCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCC
Q 046382          519 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLC  598 (691)
Q Consensus       519 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c  598 (691)
                      |.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..| .|..||++.|+++........+.+++++.+++||..-
T Consensus       172 d~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  172 DVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            99999998 67888999999999999999998 566666655 4889999999999887778889999999999999763

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=5.7e-11  Score=106.68  Aligned_cols=107  Identities=28%  Similarity=0.375  Sum_probs=26.6

Q ss_pred             CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEE
Q 046382          142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL  221 (691)
Q Consensus       142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  221 (691)
                      ..+++|+|++|.|+ .+. .+...+.+|+.|++++|.|+..  +.+..++.|++|++++|+++ .+...+...+++|++|
T Consensus        19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            34455555555554 332 2222245555666666655532  23555566666666666665 4444333345566666


Q ss_pred             EcccccCCccC-cccccCCCCCCEEEccCCcCc
Q 046382          222 ALSNNSLQGHI-FSKKFNLTNLMRLQLDGNKFI  253 (691)
Q Consensus       222 ~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  253 (691)
                      ++++|+|.... ...+..+++|+.|++.+|++.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666554321 123334455555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=1.5e-11  Score=114.41  Aligned_cols=222  Identities=22%  Similarity=0.210  Sum_probs=114.1

Q ss_pred             ccCCCCCCEEeCCCCCCccccCC---------cccccCCCCCcEEeCCCCccccccccCC-CCCccccEEEecCCCCCCC
Q 046382           15 LMHLISMEKLILSNNHFFQIPIS---------LEPLFNLSKLKTFDGEICAETESHYNSL-TPKFQLTSISLSGYIDGGT   84 (691)
Q Consensus        15 ~~~l~~L~~L~Ls~~~~~~~~~~---------~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~   84 (691)
                      +.-+.+|.+|..++..   +|+.         ...+.-+++|..+.++.|..  .++..+ ...+.|+.+......+...
T Consensus       178 ldf~~~l~~l~vs~~~---~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~~  252 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVK---DPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQDV  252 (490)
T ss_pred             HHhhhheeEEEecCCC---CCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeeccccccc
Confidence            3446677888877754   2221         12344556777777777543  222222 2233777777766544321


Q ss_pred             cchhhcCCCCCCEEEccCC---CCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchh
Q 046382           85 FPKFLYHQHDLKNADLSHL---NLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVE  161 (691)
Q Consensus        85 ~~~~l~~l~~L~~L~L~~~---~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~  161 (691)
                       | .+-....+.  |...-   -.+|..-..+ ...+.|+++||++|.|+ .+..+..-.|.++.|++|+|.+. .+.. 
T Consensus       253 -~-~l~pe~~~~--D~~~~E~~t~~G~~~~~~-dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-  324 (490)
T KOG1259|consen  253 -P-SLLPETILA--DPSGSEPSTSNGSALVSA-DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-  324 (490)
T ss_pred             -c-cccchhhhc--CccCCCCCccCCceEEec-chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-
Confidence             0 010001111  11110   0111111111 22345666666666653 33344555566666666666665 3332 


Q ss_pred             hhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCcc-CcccccCCC
Q 046382          162 IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH-IFSKKFNLT  240 (691)
Q Consensus       162 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~  240 (691)
                      + +.+++|+.|||++|.++ .+..+-.++.+.++|.+++|.+. .+. ++ ..+-+|..||+++|+|... ....++++|
T Consensus       325 L-a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LS-GL-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP  399 (490)
T KOG1259|consen  325 L-AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLS-GL-RKLYSLVNLDLSSNQIEELDEVNHIGNLP  399 (490)
T ss_pred             h-hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhh-hh-HhhhhheeccccccchhhHHHhccccccc
Confidence            2 23566666666666665 33344455666666777666664 222 12 3455666677777766532 124466777


Q ss_pred             CCCEEEccCCcCcc
Q 046382          241 NLMRLQLDGNKFIG  254 (691)
Q Consensus       241 ~L~~L~L~~n~l~~  254 (691)
                      -|+.+.+.+|.+.+
T Consensus       400 CLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  400 CLETLRLTGNPLAG  413 (490)
T ss_pred             HHHHHhhcCCCccc
Confidence            77777777777764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.3e-11  Score=121.08  Aligned_cols=111  Identities=27%  Similarity=0.265  Sum_probs=47.3

Q ss_pred             cCCCCCEEEccCCcccccCC-cCccCCCccCEEEccCCcCcccC-chhhhhCCCCCcEEEccCCcccccCch-hhhCCCC
Q 046382          116 NNTNLVMLLLANNSLFGSFR-MPIHSHQNLATLDVSNNFFHGHI-PVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKM  192 (691)
Q Consensus       116 ~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~  192 (691)
                      ++.+|+...|.++.+..... .....+++++.|||++|-+..-. ...+...+|+|+.|+++.|.+..-... .-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            44555555555554422111 12344555555555555443111 112333455555555555554311110 0113344


Q ss_pred             CCEEeccccccccccchhHhhcCCCCCEEEcccc
Q 046382          193 LERLDISDNQLTGEIPERMATGCFSLKILALSNN  226 (691)
Q Consensus       193 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  226 (691)
                      |+.|.++.|.++..--..+...+|+|+.|++..|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            5555555555442222223334455555555544

>PLN03150 hypothetical protein; Provisional

Probab=99.06  E-value=3.8e-10  Score=124.52  Aligned_cols=113  Identities=29%  Similarity=0.484  Sum_probs=100.8

Q ss_pred             CCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecccc
Q 046382          408 EVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI  487 (691)
Q Consensus       408 ~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (691)
                      .++.|+|++|.+.|.+|..+..                                                          
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~----------------------------------------------------------  440 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISK----------------------------------------------------------  440 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhC----------------------------------------------------------
Confidence            3778999999999888887654                                                          


Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccC-CCCCeE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-NTLEVF  566 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L  566 (691)
                      +++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+..+ .++..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            6789999999999999999999999999999999999999999999999999999999999999999988764 467889


Q ss_pred             EccCCcccccCC
Q 046382          567 KVAYNNLSGKIP  578 (691)
Q Consensus       567 ~l~~N~l~~~~p  578 (691)
                      ++.+|...+-.|
T Consensus       521 ~~~~N~~lc~~p  532 (623)
T PLN03150        521 NFTDNAGLCGIP  532 (623)
T ss_pred             EecCCccccCCC
Confidence            999998655433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.96  E-value=4.5e-10  Score=126.44  Aligned_cols=61  Identities=31%  Similarity=0.413  Sum_probs=23.3

Q ss_pred             cCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEecccc
Q 046382          139 HSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN  201 (691)
Q Consensus       139 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  201 (691)
                      ..+|.|+.|||++|.--+.+|..+.. +-+|++|+++++.+. .+|..++++..|.+|++..+
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~  628 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVT  628 (889)
T ss_pred             hhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhheeccccc
Confidence            33334444444433222233333333 233444444444333 33333444444444444333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=5.1e-10  Score=82.50  Aligned_cols=59  Identities=39%  Similarity=0.545  Sum_probs=28.5

Q ss_pred             CCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCc
Q 046382          514 GIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNN  572 (691)
Q Consensus       514 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~  572 (691)
                      +|++|++++|+++...++.|.++++|++|++++|.++...|+.|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444434444444555555555555544444444455555555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.94  E-value=6.9e-10  Score=81.80  Aligned_cols=61  Identities=44%  Similarity=0.601  Sum_probs=57.3

Q ss_pred             cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccc
Q 046382          489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  549 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  549 (691)
                      |+|++|++++|+++...+..|..+++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999977778999999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.92  E-value=1.3e-10  Score=122.78  Aligned_cols=246  Identities=26%  Similarity=0.268  Sum_probs=143.7

Q ss_pred             CCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEc
Q 046382          263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHL  342 (691)
Q Consensus       263 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l  342 (691)
                      +..++.+.+..|.+.. +-..+..+.+|+.|++.+|.+..... .+..+++|++|++++|.|.. +...-.++.|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK-LEGLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccc-ccchhhccchhhhee
Confidence            3344444455555442 22234455566666666666653221 14556666666666666653 223333444666666


Q ss_pred             cCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCC
Q 046382          343 SKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGH  422 (691)
Q Consensus       343 ~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  422 (691)
                      ++|.|+.+  ..+..++.|+.+++++|++...-+.....+.+++.+++.+|.+...  ..+..+..+..+++..|.++..
T Consensus       148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             ccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence            66666544  2344466777777777777643330035566777777777776532  2334444555556666666421


Q ss_pred             CChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecccccc--ccceEEcCCCe
Q 046382          423 IPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILT--SMSGIDLSCNK  500 (691)
Q Consensus       423 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~  500 (691)
                      -+.                                                            ..+.  .|+.+++++|+
T Consensus       224 ~~l------------------------------------------------------------~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  224 EGL------------------------------------------------------------NELVMLHLRELYLSGNR  243 (414)
T ss_pred             cCc------------------------------------------------------------ccchhHHHHHHhcccCc
Confidence            110                                                            0012  37888888888


Q ss_pred             eeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccccc---CCcc-cccCCCCCeEEccCCccccc
Q 046382          501 LTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK---IPPQ-LIVLNTLEVFKVAYNNLSGK  576 (691)
Q Consensus       501 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~l~~N~l~~~  576 (691)
                      +. ..+..+..+..+..|++++|++...  ..+.....+..+..+.|.+...   .... ....+.+....+.+|++...
T Consensus       244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence            87 4446677788888888888888743  3356667778888888877521   2221 45667888888888888765


Q ss_pred             CC
Q 046382          577 IP  578 (691)
Q Consensus       577 ~p  578 (691)
                      .+
T Consensus       321 ~~  322 (414)
T KOG0531|consen  321 SS  322 (414)
T ss_pred             cc
Confidence            44

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.91  E-value=1.8e-10  Score=121.57  Aligned_cols=241  Identities=25%  Similarity=0.233  Sum_probs=155.6

Q ss_pred             hcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEE
Q 046382          285 GNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTL  364 (691)
Q Consensus       285 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L  364 (691)
                      ..+..++.+.+..|.+.. ....+..+.+|+.+++.+|.+.......-.+++|++|++++|.|+.+.  .+..++.|+.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence            345666777788887764 233466778888888888888754433446788888888888887653  35556668888


Q ss_pred             eccCCCCCCCcchhhcCCCCccEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCC
Q 046382          365 DLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPT  443 (691)
Q Consensus       365 ~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~  443 (691)
                      ++++|.|+..  ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+...-...                 
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~-----------------  205 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD-----------------  205 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH-----------------
Confidence            8888887743  345557788888888888774433 1 466777777888887775211110                 


Q ss_pred             cccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhccc--CCCeEeCC
Q 046382          444 SIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLS--GIHALNLS  521 (691)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls  521 (691)
                                                                 .+..+..+++..|.++...+  +..+.  .|+.++++
T Consensus       206 -------------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~  240 (414)
T KOG0531|consen  206 -------------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLS  240 (414)
T ss_pred             -------------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcc
Confidence                                                       02344445778887763332  22233  38889999


Q ss_pred             CCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccC---CC--CCCCCCcCcCcccCCCC
Q 046382          522 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKI---PD--RAQFSTFEEDSYEGNPF  596 (691)
Q Consensus       522 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~---p~--~~~~~~~~~~~~~~Np~  596 (691)
                      +|++. ..+..+..+..+..||+++|++...  ..+...+.+..+....|.+...-   ..  .....++....+.+||-
T Consensus       241 ~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  241 GNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             cCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence            99988 4446677888899999999988743  23455667777777777765321   11  22234445555666653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.84  E-value=4.9e-09  Score=118.19  Aligned_cols=272  Identities=20%  Similarity=0.188  Sum_probs=166.4

Q ss_pred             cCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCc--CcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCC
Q 046382          116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF--FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML  193 (691)
Q Consensus       116 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  193 (691)
                      +....+...+-+|.+... +.. ..++.|++|-+..|.  +. .++..++..++.|+.|||++|.--+.+|..++.+-+|
T Consensus       521 ~~~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             chhheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            446677777777766332 222 234589999999986  55 7888888889999999999987767899999999999


Q ss_pred             CEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCc--ccCCccccCCCCCCEEEc
Q 046382          194 ERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFI--GEIPESLSKCYLLGGLYL  271 (691)
Q Consensus       194 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l  271 (691)
                      ++|+++++.+. .+|.++ ..+..|.+|++..+.-....+.....+++|++|.+......  ...-..+..+..|+.+..
T Consensus       598 ryL~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hcccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            99999999998 899988 57999999999988765555566666999999998776421  112233445555555555


Q ss_pred             cCCcCCCcchhhhhcCCCCC----EEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC------C-CCcccEE
Q 046382          272 SDNHLSGEIPRWLGNLSALE----GIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF------S-PAHIEQV  340 (691)
Q Consensus       272 ~~n~~~~~~~~~l~~l~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~------~-~~~L~~L  340 (691)
                      .....  .....+..++.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.+......      . ++++..+
T Consensus       676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~  752 (889)
T KOG4658|consen  676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV  752 (889)
T ss_pred             ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence            33322  1111222223322    2232222222 344556777888888888887754322221      0 1223222


Q ss_pred             EccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCc
Q 046382          341 HLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK  396 (691)
Q Consensus       341 ~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~  396 (691)
                      ...++.... .+......++|+.|.+..+.....+......+..+..+.+..+.+.
T Consensus       753 ~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  753 SILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             Hhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            222222111 1122234567777777776655444444444555554444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=3e-10  Score=105.99  Aligned_cols=84  Identities=24%  Similarity=0.147  Sum_probs=35.7

Q ss_pred             CCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCC-cCcccCchhhhhCCCCCcEEE
Q 046382           95 LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNN-FFHGHIPVEIGTYLPGLMDLN  173 (691)
Q Consensus        95 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~  173 (691)
                      |++|||+...++..-...++..|.+|+.|.|.++++.+.+...++...+|+.|+++.+ .++......++..++.|.+|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            4445554444443333333444444444444444444444444444444444444443 233222222333344444444


Q ss_pred             ccCCc
Q 046382          174 LSRNA  178 (691)
Q Consensus       174 L~~n~  178 (691)
                      ++.|.
T Consensus       267 lsWc~  271 (419)
T KOG2120|consen  267 LSWCF  271 (419)
T ss_pred             chHhh
Confidence            44443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.63  E-value=1.5e-09  Score=113.01  Aligned_cols=109  Identities=27%  Similarity=0.291  Sum_probs=83.4

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      ++.++.|||++|+++...  .+..++.|++|||++|.+....--...++. |+.|.+++|.++..  .++.++.+|+.||
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence            788999999999998433  788899999999999999843333344444 99999999999744  4678889999999


Q ss_pred             ccCCcccccCC--CCCCCCCcCcCcccCCCCCCCCC
Q 046382          568 VAYNNLSGKIP--DRAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       568 l~~N~l~~~~p--~~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      +++|-|.+.-.  ....+..+..+.++|||..|..+
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~  296 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW  296 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence            99998876311  12233456677899999999754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=3.6e-10  Score=117.55  Aligned_cols=128  Identities=27%  Similarity=0.205  Sum_probs=83.2

Q ss_pred             CCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEE
Q 046382           94 DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN  173 (691)
Q Consensus        94 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~  173 (691)
                      .|.+.+.++|.+. .+..+ +.-++.|+.|+|++|+++...  .+..++.|++|||++|+++ .+|.--...+ +|+.|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence            4666677777765 44444 356677777777777775443  4667777788888887776 6664433333 477788


Q ss_pred             ccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC
Q 046382          174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ  229 (691)
Q Consensus       174 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  229 (691)
                      +++|.++..  ..+.++.+|+.||+++|-+.+.-.-.....+..|+.|+|.+|.+-
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            888777632  456777778888888877664333333344567777777777664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=4.7e-09  Score=98.16  Aligned_cols=86  Identities=26%  Similarity=0.231  Sum_probs=41.5

Q ss_pred             cCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccc-cccccchhHhhcCCCCCEEE
Q 046382          144 LATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ-LTGEIPERMATGCFSLKILA  222 (691)
Q Consensus       144 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~  222 (691)
                      |++||||+..|+..--..+.+.+.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++.....-++..|..|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            55555555555433233333344555555555555554444555555555555555442 33222223344455555555


Q ss_pred             cccccCC
Q 046382          223 LSNNSLQ  229 (691)
Q Consensus       223 l~~n~l~  229 (691)
                      ++.|.+.
T Consensus       267 lsWc~l~  273 (419)
T KOG2120|consen  267 LSWCFLF  273 (419)
T ss_pred             chHhhcc
Confidence            5555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.40  E-value=2.4e-08  Score=97.96  Aligned_cols=230  Identities=18%  Similarity=0.193  Sum_probs=118.4

Q ss_pred             CcEEeCCCCccccccc-cCC-CCCccccEEEecCCCC-CCCcc-hhhcCCCCCCEEEccCC-CCcccCchHHhhcCCCCC
Q 046382           47 LKTFDGEICAETESHY-NSL-TPKFQLTSISLSGYID-GGTFP-KFLYHQHDLKNADLSHL-NLSGQFPNWLLENNTNLV  121 (691)
Q Consensus        47 L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~L~~~~~-~~~~~-~~l~~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~  121 (691)
                      |+.|.++++....... ..+ ...+++++|.+.+|.. ++... ..-..|++|++|++..| .++......+...+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            5555555544333221 111 2333666666666642 22222 22246788888888885 455444444556788888


Q ss_pred             EEEccCCcc-ccc-CCcCccCCCccCEEEccCCc-CcccCchhhhhCCCCCcEEEccCCcc-cccC-chhhhCCCCCCEE
Q 046382          122 MLLLANNSL-FGS-FRMPIHSHQNLATLDVSNNF-FHGHIPVEIGTYLPGLMDLNLSRNAF-NGSI-PSSFADMKMLERL  196 (691)
Q Consensus       122 ~L~L~~n~~-~~~-~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~n~i-~~~~-~~~~~~l~~L~~L  196 (691)
                      +|+++.|.- .+. +..-..++..++.+.+.+|. ...+.-..+....+-+.++++.+|.. +... -..-..+..|+.|
T Consensus       220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l  299 (483)
T KOG4341|consen  220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL  299 (483)
T ss_pred             HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence            888888843 221 11224456667777666653 11111122233344566677666543 2111 0112345677777


Q ss_pred             eccccc-cccccchhHhhcCCCCCEEEccccc-CCccCccccc-CCCCCCEEEccCCcCccc--CCccccCCCCCCEEEc
Q 046382          197 DISDNQ-LTGEIPERMATGCFSLKILALSNNS-LQGHIFSKKF-NLTNLMRLQLDGNKFIGE--IPESLSKCYLLGGLYL  271 (691)
Q Consensus       197 ~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l  271 (691)
                      +.+++. +++..-..+..++++|+.+.++.++ ++......++ +.+.|+.+++..+.....  +...-.+++.|+.+.+
T Consensus       300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl  379 (483)
T KOG4341|consen  300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL  379 (483)
T ss_pred             cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence            777653 3333444455667777777777765 2222222222 456666666666553311  1122234566666666


Q ss_pred             cCCcC
Q 046382          272 SDNHL  276 (691)
Q Consensus       272 ~~n~~  276 (691)
                      ++|..
T Consensus       380 shce~  384 (483)
T KOG4341|consen  380 SHCEL  384 (483)
T ss_pred             hhhhh
Confidence            65543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.29  E-value=5.3e-08  Score=80.50  Aligned_cols=110  Identities=20%  Similarity=0.290  Sum_probs=82.2

Q ss_pred             ccccceEEcCCCeeeeccchhh-hcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVF  566 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  566 (691)
                      ...|+..+|++|.+. ..|..| ...+.+++|+|++|.|+ .+|..+..++.|+.|+++.|++. ..|..+..+.++-+|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            356788899999998 455554 44568999999999999 67888999999999999999998 667777779999999


Q ss_pred             EccCCcccccCCCCCCCCCcCc-CcccCCCCCCCCC
Q 046382          567 KVAYNNLSGKIPDRAQFSTFEE-DSYEGNPFLCGKP  601 (691)
Q Consensus       567 ~l~~N~l~~~~p~~~~~~~~~~-~~~~~Np~~c~~~  601 (691)
                      +..+|.+-....+ ...++... ..+.++||--+|+
T Consensus       129 ds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  129 DSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             cCCCCccccCcHH-HhccccHHHHHhcCCcccccCc
Confidence            9999987643333 22333322 2456677766654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.25  E-value=4.7e-07  Score=83.91  Aligned_cols=139  Identities=27%  Similarity=0.310  Sum_probs=63.6

Q ss_pred             ccCCCccCEEEccCCcCcccCchhhh---hCCCCCcEEEccCCcccccCchh-------------hhCCCCCCEEecccc
Q 046382          138 IHSHQNLATLDVSNNFFHGHIPVEIG---TYLPGLMDLNLSRNAFNGSIPSS-------------FADMKMLERLDISDN  201 (691)
Q Consensus       138 l~~l~~L~~L~Ls~n~i~~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~-------------~~~l~~L~~L~L~~n  201 (691)
                      +.+||+|+..+||+|.+....|..+.   +..+.|++|.+++|.+..+....             ...-|.|++.....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            34455555555555555444443322   22345566666665543211111             123356666666666


Q ss_pred             ccccccchhH----hhcCCCCCEEEcccccCCccC-----cccccCCCCCCEEEccCCcCcccC----CccccCCCCCCE
Q 046382          202 QLTGEIPERM----ATGCFSLKILALSNNSLQGHI-----FSKKFNLTNLMRLQLDGNKFIGEI----PESLSKCYLLGG  268 (691)
Q Consensus       202 ~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~  268 (691)
                      ++. ..+...    +..-..|+.+.+..|.|....     ...++.+.+|+.||+.+|.++...    ...+..++.|+.
T Consensus       168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            665 333322    122235666666666554211     112234455666666665554321    122333344455


Q ss_pred             EEccCCcCC
Q 046382          269 LYLSDNHLS  277 (691)
Q Consensus       269 L~l~~n~~~  277 (691)
                      |.+.+|-++
T Consensus       247 L~lnDClls  255 (388)
T COG5238         247 LRLNDCLLS  255 (388)
T ss_pred             ccccchhhc
Confidence            555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.25  E-value=1.7e-07  Score=86.67  Aligned_cols=248  Identities=22%  Similarity=0.153  Sum_probs=135.3

Q ss_pred             ccccCCCCCCEEeCCCCCCccccCC--cccccCCCCCcEEeCCC--CccccccccCCCCCccccEEEecCCCCCCCcchh
Q 046382           13 ISLMHLISMEKLILSNNHFFQIPIS--LEPLFNLSKLKTFDGEI--CAETESHYNSLTPKFQLTSISLSGYIDGGTFPKF   88 (691)
Q Consensus        13 ~~~~~l~~L~~L~Ls~~~~~~~~~~--~~~l~~l~~L~~L~l~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~   88 (691)
                      +.+..+..+.+++||||.|.+....  ...+.+-++|+..+++.  .....+.+.+     +|           ..+...
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~-----~L-----------~~Ll~a   87 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYS-----NL-----------VMLLKA   87 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHH-----HH-----------HHHHHH
Confidence            4455678889999999984332211  12345556677777665  1111111110     00           012234


Q ss_pred             hcCCCCCCEEEccCCCCcccCchH---HhhcCCCCCEEEccCCcccccCCc-------------CccCCCccCEEEccCC
Q 046382           89 LYHQHDLKNADLSHLNLSGQFPNW---LLENNTNLVMLLLANNSLFGSFRM-------------PIHSHQNLATLDVSNN  152 (691)
Q Consensus        89 l~~l~~L~~L~L~~~~~~~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~Ls~n  152 (691)
                      +.+||+|+..+||.|-+....|+.   ++++-+.|++|.+++|.+.-....             ....-|.|++.....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            556667777777776665444432   234556677777777655211111             1234467777777777


Q ss_pred             cCcccCchhh----hhCCCCCcEEEccCCcccccC-----chhhhCCCCCCEEeccccccccccchh---HhhcCCCCCE
Q 046382          153 FFHGHIPVEI----GTYLPGLMDLNLSRNAFNGSI-----PSSFADMKMLERLDISDNQLTGEIPER---MATGCFSLKI  220 (691)
Q Consensus       153 ~i~~~~~~~~----~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~  220 (691)
                      ++. ..+...    +..-.+|+++.+..|.|....     -..+..+.+|+.||+..|-++-.....   .....+.|+.
T Consensus       168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            765 444322    222246777777777765321     112445677888888887766222111   1233455777


Q ss_pred             EEcccccCCccCcccc------cCCCCCCEEEccCCcCcccCCcc-----c--cCCCCCCEEEccCCcCC
Q 046382          221 LALSNNSLQGHIFSKK------FNLTNLMRLQLDGNKFIGEIPES-----L--SKCYLLGGLYLSDNHLS  277 (691)
Q Consensus       221 L~l~~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~-----~--~~l~~L~~L~l~~n~~~  277 (691)
                      |.+..|-++......+      ...|+|+.|-..+|.+.+.....     +  ..++-|..|.+.+|++.
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            8887777664333222      13577888888877655432211     1  24566777788888886

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=5.7e-07  Score=84.47  Aligned_cols=226  Identities=18%  Similarity=0.104  Sum_probs=120.3

Q ss_pred             ccEEEecCCCCCCC--cchhhcCCCCCCEEEccCCCCccc-CchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEE
Q 046382           71 LTSISLSGYIDGGT--FPKFLYHQHDLKNADLSHLNLSGQ-FPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATL  147 (691)
Q Consensus        71 L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  147 (691)
                      ++-|.+.++.+...  ....-..++.++++||.+|.|++- -...++.++|.|+.|+|+.|.+...+...-....+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            33455555555432  112223556677777777777531 112345677777777777777654433221345677777


Q ss_pred             EccCCcCcccCchhhhhCCCCCcEEEccCCccccc--CchhhhCC-CCCCEEeccccccccc-cchhHhhcCCCCCEEEc
Q 046382          148 DVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS--IPSSFADM-KMLERLDISDNQLTGE-IPERMATGCFSLKILAL  223 (691)
Q Consensus       148 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l-~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l  223 (691)
                      -|.+..+.-.-...+...+|.+++|.++.|.....  ........ +.+++|....|...-- --..+..-+|++..+-+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            77777655333334444466667776666643311  11111111 2344444444432100 00112234667777777


Q ss_pred             ccccCCccCc-ccccCCCCCCEEEccCCcCcccC-CccccCCCCCCEEEccCCcCCCcchh------hhhcCCCCCEEec
Q 046382          224 SNNSLQGHIF-SKKFNLTNLMRLQLDGNKFIGEI-PESLSKCYLLGGLYLSDNHLSGEIPR------WLGNLSALEGIRM  295 (691)
Q Consensus       224 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~------~l~~l~~L~~L~l  295 (691)
                      ..|.+..... ..+..+|.+.-|.|+.+++..-. .+.+..++.|..|.++++++.+....      .++.+++++.|+=
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            7777654322 23345666667777777765321 24566777888888888877543211      2456677777664


Q ss_pred             C
Q 046382          296 P  296 (691)
Q Consensus       296 ~  296 (691)
                      +
T Consensus       287 s  287 (418)
T KOG2982|consen  287 S  287 (418)
T ss_pred             c
Confidence            3

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=3e-07  Score=86.25  Aligned_cols=212  Identities=17%  Similarity=0.071  Sum_probs=117.3

Q ss_pred             hcCCCCCCEEEccCCCCcccCch-HHhhcCCCCCEEEccCCccccc--CCcCccCCCccCEEEccCCcCcccCchhhhhC
Q 046382           89 LYHQHDLKNADLSHLNLSGQFPN-WLLENNTNLVMLLLANNSLFGS--FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY  165 (691)
Q Consensus        89 l~~l~~L~~L~L~~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~  165 (691)
                      +.....++.|.+.++.|...-.. .+-..++.++.+||.+|.+++.  +...+.++|.|+.|+++.|.+...+... ...
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p  119 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLP  119 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-ccc
Confidence            33444566677777766532221 2234678899999999988542  3344678899999999999876333221 122


Q ss_pred             CCCCcEEEccCCcccc-cCchhhhCCCCCCEEecccccccc--ccchhHhhcCCCCCEEEcccccCCccC--cccccCCC
Q 046382          166 LPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQLTG--EIPERMATGCFSLKILALSNNSLQGHI--FSKKFNLT  240 (691)
Q Consensus       166 l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~  240 (691)
                      ..+|++|.|.+..+.. .....+..+|.+++|.++.|.+..  .-....-..-+.+++|....|......  ..--.-+|
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp  199 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP  199 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence            5688899888887653 233456677888888888774321  001111111224444444444321000  00001246


Q ss_pred             CCCEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCCCc-chhhhhcCCCCCEEecCCCccC
Q 046382          241 NLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNHLSGE-IPRWLGNLSALEGIRMPNNNLE  301 (691)
Q Consensus       241 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~  301 (691)
                      ++..+.+..|.+..... ..+..++.+.-|+++.+.+.+. ..+.+.+++.|..|.++++.+.
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            66666666666543321 2334455555666666666431 2244556666666666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.13  E-value=1.2e-07  Score=93.17  Aligned_cols=129  Identities=19%  Similarity=0.121  Sum_probs=63.0

Q ss_pred             CCCCCCEEEccCCcC-CCcchhhh-hcCCCCCEEecCCCccCCC--cchhhcCCCCCCEEEccCCcCcccC-----CC-C
Q 046382          262 KCYLLGGLYLSDNHL-SGEIPRWL-GNLSALEGIRMPNNNLEGP--IPIEFCQLSALKILDLSNNSIFGTL-----PS-C  331 (691)
Q Consensus       262 ~l~~L~~L~l~~n~~-~~~~~~~l-~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~-----~~-~  331 (691)
                      ++.+|+.+.++.|+- ++.....+ .+++.|+.+++.++.....  +...-.+++.|+.+.+++|......     .. .
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            445555555555542 21111122 2345666666665543211  1111124556666666665432111     00 1


Q ss_pred             CCCCcccEEEccCCccc-cccccccCCCCCccEEeccCCCCCCC--cchhhcCCCCccEEec
Q 046382          332 FSPAHIEQVHLSKNKIE-GRLESIIHDSPYLVTLDLSYNRLHGS--IPNRIDRLPQLNYLLL  390 (691)
Q Consensus       332 ~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~L  390 (691)
                      -....++.+.++++... +..-..+..+++|+.+++-+++-...  +...-..+|++++..+
T Consensus       398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            13456777777777543 33344566788888888887753211  1122344666655433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=2.8e-07  Score=76.38  Aligned_cols=112  Identities=27%  Similarity=0.339  Sum_probs=58.2

Q ss_pred             CCEEEccCCCCcccCchHH--hhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEE
Q 046382           95 LKNADLSHLNLSGQFPNWL--LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDL  172 (691)
Q Consensus        95 L~~L~L~~~~~~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L  172 (691)
                      +..++|+.|++- .++...  ......|+..+|++|.+....+..-...+.++.|++++|.++ .+|..+.. ++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhhc
Confidence            455666666553 333322  123344444566666554333332333445566666666665 55655443 5566666


Q ss_pred             EccCCcccccCchhhhCCCCCCEEeccccccccccchhH
Q 046382          173 NLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERM  211 (691)
Q Consensus       173 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  211 (691)
                      +++.|.+. ..|..+..+.++-.|+..+|.+. ++|..+
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl  142 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL  142 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence            66666655 44555555555555555555554 454443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=4.2e-06  Score=56.16  Aligned_cols=36  Identities=39%  Similarity=0.672  Sum_probs=19.1

Q ss_pred             CCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382          514 GIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  550 (691)
Q Consensus       514 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (691)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33444555666666666666555

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.95  E-value=1.5e-05  Score=71.12  Aligned_cols=105  Identities=25%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccC-cccccCCCCCCE
Q 046382          166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHI-FSKKFNLTNLMR  244 (691)
Q Consensus       166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  244 (691)
                      ..+...+||++|.+...  ..|..++.|.+|.+.+|+|+ .+...+...+++|+.|.+.+|.+.... ...+..+|.|++
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            44666777777776522  34666777777777777777 566666566667777777777665321 123445666666


Q ss_pred             EEccCCcCcccCC---ccccCCCCCCEEEccC
Q 046382          245 LQLDGNKFIGEIP---ESLSKCYLLGGLYLSD  273 (691)
Q Consensus       245 L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~  273 (691)
                      |.+-+|.+...--   ..+..+++|+.||.++
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            6666666543211   2234455555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.93  E-value=3.6e-06  Score=92.88  Aligned_cols=149  Identities=21%  Similarity=0.204  Sum_probs=86.7

Q ss_pred             CCCcEEeCCCCccccccccCC--CCCccccEEEecCCCCC-CCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCC
Q 046382           45 SKLKTFDGEICAETESHYNSL--TPKFQLTSISLSGYIDG-GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLV  121 (691)
Q Consensus        45 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~  121 (691)
                      .+|++||+++......++..-  .-+++|++|.+++-.+. +.+.....++++|+.||+|+++++ .+ .+ .+++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~G-IS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SG-ISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HH-HhccccHH
Confidence            467777777744433333211  12337788887776653 334455567788888888888776 33 33 37788888


Q ss_pred             EEEccCCcccc-cCCcCccCCCccCEEEccCCcCcccCch------hhhhCCCCCcEEEccCCcccccCchhh-hCCCCC
Q 046382          122 MLLLANNSLFG-SFRMPIHSHQNLATLDVSNNFFHGHIPV------EIGTYLPGLMDLNLSRNAFNGSIPSSF-ADMKML  193 (691)
Q Consensus       122 ~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~------~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L  193 (691)
                      +|.+.+-.+.. ..-..+-.+++|+.||+|..... ..+.      +.+..+|+|+.||.+++.+.+..-+.+ ..-++|
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            87776655532 11123556788888888876543 2221      122346788888888777764433332 223444


Q ss_pred             CEEe
Q 046382          194 ERLD  197 (691)
Q Consensus       194 ~~L~  197 (691)
                      +.+.
T Consensus       278 ~~i~  281 (699)
T KOG3665|consen  278 QQIA  281 (699)
T ss_pred             hhhh
Confidence            4443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.91  E-value=9.8e-06  Score=54.39  Aligned_cols=38  Identities=32%  Similarity=0.645  Sum_probs=32.5

Q ss_pred             cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCc
Q 046382          489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTG  527 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  527 (691)
                      ++|++|++++|+++ .+|..++++++|+.|++++|+|+.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            47899999999999 567779999999999999999984

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=3.5e-05  Score=78.25  Aligned_cols=72  Identities=17%  Similarity=0.210  Sum_probs=40.7

Q ss_pred             CCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC-cCcccCCcCCCCCCCCCEE
Q 046382          334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN-YIKGEIPVQLCQLKEVRLI  412 (691)
Q Consensus       334 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L  412 (691)
                      +.+++.|++++|.++..+    .-.++|+.|.++++.--...|+.+  .++|++|++++| .+. .+|      .+|+.|
T Consensus        51 ~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceE
Confidence            466777777777666442    122357777777643333455443  246777777776 333 333      245666


Q ss_pred             EccCCC
Q 046382          413 DLSHNN  418 (691)
Q Consensus       413 ~l~~n~  418 (691)
                      +++++.
T Consensus       118 ~L~~n~  123 (426)
T PRK15386        118 EIKGSA  123 (426)
T ss_pred             EeCCCC
Confidence            665544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.88  E-value=6.3e-06  Score=90.96  Aligned_cols=106  Identities=21%  Similarity=0.179  Sum_probs=49.0

Q ss_pred             cccEEEecCCCCC-CCcchhhc-CCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEE
Q 046382           70 QLTSISLSGYIDG-GTFPKFLY-HQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATL  147 (691)
Q Consensus        70 ~L~~L~L~~~~~~-~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  147 (691)
                      +|++|+++|...- ...+..++ -+|.|++|.+++-.+...--..++.++++|..||+|+++++..  ..++.+++|++|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            5666666554321 12222222 3555666666554442221122344555666666666555433  335555555555


Q ss_pred             EccCCcCcc-cCchhhhhCCCCCcEEEccCCc
Q 046382          148 DVSNNFFHG-HIPVEIGTYLPGLMDLNLSRNA  178 (691)
Q Consensus       148 ~Ls~n~i~~-~~~~~~~~~l~~L~~L~L~~n~  178 (691)
                      .+.+-.+.. ..-..+|. +++|+.||+|...
T Consensus       201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDK  231 (699)
T ss_pred             hccCCCCCchhhHHHHhc-ccCCCeeeccccc
Confidence            555544431 11123333 4555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.77  E-value=5.5e-05  Score=65.64  Aligned_cols=104  Identities=19%  Similarity=0.282  Sum_probs=35.2

Q ss_pred             hhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCC
Q 046382          114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML  193 (691)
Q Consensus       114 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  193 (691)
                      |.++++|+.+.+.. .+.......|..+++|+.+.+.++ +. .++...+..+++++.+.+.+ .+.......|..+++|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence            44444444444442 233333334444444444444443 33 33344444344444444433 2222233334444444


Q ss_pred             CEEeccccccccccchhHhhcCCCCCEEEcc
Q 046382          194 ERLDISDNQLTGEIPERMATGCFSLKILALS  224 (691)
Q Consensus       194 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  224 (691)
                      +.+++..+ +. .++...+.++ +++.+.+.
T Consensus        84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             CEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred             cccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence            44444333 22 3333333333 44444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.73  E-value=5.5e-05  Score=67.57  Aligned_cols=104  Identities=22%  Similarity=0.267  Sum_probs=70.2

Q ss_pred             CCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCc-chhhcCCCCccEEecc
Q 046382          313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI-PNRIDRLPQLNYLLLA  391 (691)
Q Consensus       313 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~L~  391 (691)
                      +...+|+++|.+. ..+....++.|..|.+.+|+|+.+.+..-..+++|+.|.+.+|.|.... -+.+..+|+|++|.+-
T Consensus        43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            5566777777765 3444446677777777777777777766666777888888888776321 1345677888888888


Q ss_pred             cCcCcccC---CcCCCCCCCCCEEEccCC
Q 046382          392 HNYIKGEI---PVQLCQLKEVRLIDLSHN  417 (691)
Q Consensus       392 ~n~i~~~~---~~~~~~l~~L~~L~l~~n  417 (691)
                      +|+++..-   .-.+..+++|+.||.+.=
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhh
Confidence            88776321   123567788888887654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00017  Score=73.40  Aligned_cols=55  Identities=13%  Similarity=0.173  Sum_probs=26.5

Q ss_pred             CCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCC
Q 046382           91 HQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNN  152 (691)
Q Consensus        91 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n  152 (691)
                      .+.++++|++++|.++ .+|.    -..+|++|.+++|.-....|..+  .++|++|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3455556666655554 4441    12345666665543323333222  245666666655

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.54  E-value=0.0002  Score=62.11  Aligned_cols=15  Identities=13%  Similarity=0.507  Sum_probs=5.1

Q ss_pred             hhhCCCCCCEEeccc
Q 046382          186 SFADMKMLERLDISD  200 (691)
Q Consensus       186 ~~~~l~~L~~L~L~~  200 (691)
                      .|.++++|+.+.+.+
T Consensus        30 ~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen   30 AFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTTT-TT-SEEEESS
T ss_pred             hcccccccccccccc
Confidence            333333344444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.38  E-value=3.4e-05  Score=84.10  Aligned_cols=64  Identities=28%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             CCCCCCEEeccccc-cccccchhHhhcCCCCCEEEccccc-CCccCcccc-cCCCCCCEEEccCCcC
Q 046382          189 DMKMLERLDISDNQ-LTGEIPERMATGCFSLKILALSNNS-LQGHIFSKK-FNLTNLMRLQLDGNKF  252 (691)
Q Consensus       189 ~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l  252 (691)
                      .+++|+.|+++.+. +++..-..+...+++|+.|.+.++. ++......+ ..+++|++|+++++..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            34555555555555 4433333333345566666555554 332222222 2355566666665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.18  E-value=6.4e-05  Score=81.95  Aligned_cols=191  Identities=22%  Similarity=0.090  Sum_probs=105.1

Q ss_pred             cCCCCCCEEEccCCCCcccC-chHHhhcCCCCCEEEccCC-cccccCC----cCccCCCccCEEEccCCc-CcccCchhh
Q 046382           90 YHQHDLKNADLSHLNLSGQF-PNWLLENNTNLVMLLLANN-SLFGSFR----MPIHSHQNLATLDVSNNF-FHGHIPVEI  162 (691)
Q Consensus        90 ~~l~~L~~L~L~~~~~~~~~-~~~~~~~l~~L~~L~L~~n-~~~~~~~----~~l~~l~~L~~L~Ls~n~-i~~~~~~~~  162 (691)
                      ..++.|+.|.+.++.-.... -..+...++.|+.|+++++ ......+    .....+++|+.|+++++. +++..-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            34678888888877432221 1223467888888888873 2111111    234456888888888887 665555556


Q ss_pred             hhCCCCCcEEEccCCc-ccccC-chhhhCCCCCCEEeccccccc-cccchhHhhcCCCCCEEEcccccCCccCcccccCC
Q 046382          163 GTYLPGLMDLNLSRNA-FNGSI-PSSFADMKMLERLDISDNQLT-GEIPERMATGCFSLKILALSNNSLQGHIFSKKFNL  239 (691)
Q Consensus       163 ~~~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  239 (691)
                      ...+++|++|.+.+|. ++... -.....+++|++|+++++... +..-......+++++.|.+....-          +
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c  334 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C  334 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence            6557888888877776 44322 223456778888888887643 121222345577777755443221          2


Q ss_pred             CCCCEEEccCCcCc---ccCCccccCCCCCCEEEccCCcCCCcc-hhhhhcCCCC
Q 046382          240 TNLMRLQLDGNKFI---GEIPESLSKCYLLGGLYLSDNHLSGEI-PRWLGNLSAL  290 (691)
Q Consensus       240 ~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L  290 (691)
                      +.++.+.+.+....   .........++.++.+.+..+...... ...+.+++.|
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            33333333332211   111223456666777777666643222 2333444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.16  E-value=0.00025  Score=66.40  Aligned_cols=57  Identities=30%  Similarity=0.319  Sum_probs=23.4

Q ss_pred             CCCcEEEccCCcccc-cCchhhhCCCCCCEEecccccccc--ccchhHhhcCCCCCEEEc
Q 046382          167 PGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQLTG--EIPERMATGCFSLKILAL  223 (691)
Q Consensus       167 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l  223 (691)
                      |+|++|++++|+|.. .--..+..+.+|..|++.+|..+.  .--..+|.-+++|+.|+-
T Consensus        91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            444444444444431 000113334445555555554431  111223444555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.05  E-value=0.00028  Score=66.02  Aligned_cols=129  Identities=19%  Similarity=0.193  Sum_probs=76.3

Q ss_pred             cccEEEecCCCC-CCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCC--cccccCCcCccCCCccCE
Q 046382           70 QLTSISLSGYID-GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANN--SLFGSFRMPIHSHQNLAT  146 (691)
Q Consensus        70 ~L~~L~L~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~~~~l~~l~~L~~  146 (691)
                      .++.+.+..|.- .+.+......+..|+.|++.+..++ .+..  |-.+++|+.|.++.|  ++.+........+|+|++
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~   95 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV   95 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhcccee-eccc--CCCcchhhhhcccCCcccccccceehhhhCCceeE
Confidence            344444443332 2334444455666777777777665 3333  356778888888888  555555555666688888


Q ss_pred             EEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCc---hhhhCCCCCCEEecccc
Q 046382          147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIP---SSFADMKMLERLDISDN  201 (691)
Q Consensus       147 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n  201 (691)
                      |++++|++...-...-.+.+.+|..|++.+|..+...-   ..|.-+++|++||-...
T Consensus        96 l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen   96 LNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             EeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            88888877621001111225677888888887664211   23556677777765443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=8.6e-05  Score=69.53  Aligned_cols=100  Identities=21%  Similarity=0.192  Sum_probs=57.2

Q ss_pred             CCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEE
Q 046382           93 HDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDL  172 (691)
Q Consensus        93 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L  172 (691)
                      .+.+.|++.+|.+++.   .+..+++.|++|.|+-|+|+...|  +..|.+|++|.|..|.|.+.-.....+.+|+|+.|
T Consensus        19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            3456677777766532   234667777777777777755443  66667777777777766622222233445666666


Q ss_pred             EccCCcccccCch-----hhhCCCCCCEEe
Q 046382          173 NLSRNAFNGSIPS-----SFADMKMLERLD  197 (691)
Q Consensus       173 ~L~~n~i~~~~~~-----~~~~l~~L~~L~  197 (691)
                      .|..|.-.+..+.     .+.-+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666554433222     234455555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.00012  Score=68.68  Aligned_cols=84  Identities=21%  Similarity=0.185  Sum_probs=44.0

Q ss_pred             CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEE
Q 046382          142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL  221 (691)
Q Consensus       142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  221 (691)
                      .+.+.|+..+|.++   ...++..++.|+.|.|+-|+|+..  ..+..+++|++|.|..|.|.+.-.-....++++|+.|
T Consensus        19 ~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34455555555554   223444456666666666666532  2355666666666666666522122233455666666


Q ss_pred             EcccccCCc
Q 046382          222 ALSNNSLQG  230 (691)
Q Consensus       222 ~l~~n~l~~  230 (691)
                      .|..|.-.+
T Consensus        94 WL~ENPCc~  102 (388)
T KOG2123|consen   94 WLDENPCCG  102 (388)
T ss_pred             hhccCCccc
Confidence            665555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.30  E-value=0.0077  Score=33.40  Aligned_cols=8  Identities=75%  Similarity=0.941  Sum_probs=2.8

Q ss_pred             EeCCCCcC
Q 046382          518 LNLSHNNL  525 (691)
Q Consensus       518 L~Ls~N~l  525 (691)
                      |||++|++
T Consensus         5 Ldls~n~l   12 (22)
T PF00560_consen    5 LDLSGNNL   12 (22)
T ss_dssp             EEETSSEE
T ss_pred             EECCCCcC
Confidence            33333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.95  E-value=0.015  Score=32.20  Aligned_cols=22  Identities=41%  Similarity=0.610  Sum_probs=17.6

Q ss_pred             ccceEEcCCCeeeeccchhhhcc
Q 046382          490 SMSGIDLSCNKLTGEIPTQIGYL  512 (691)
Q Consensus       490 ~L~~L~Ls~n~l~~~~~~~~~~l  512 (691)
                      +|++|||++|+++ .+|..|+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4899999999999 777767653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.40  E-value=0.0018  Score=68.76  Aligned_cols=90  Identities=28%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             CCCCCCEEeccccccccccch---hHhhcCCC-CCEEEcccccCCccC----cccccCC-CCCCEEEccCCcCcccCC--
Q 046382          189 DMKMLERLDISDNQLTGEIPE---RMATGCFS-LKILALSNNSLQGHI----FSKKFNL-TNLMRLQLDGNKFIGEIP--  257 (691)
Q Consensus       189 ~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~-L~~L~l~~n~l~~~~----~~~~~~l-~~L~~L~L~~n~l~~~~~--  257 (691)
                      ...++++|++++|.++...-.   ......+. +..+++..|.+.+..    ...+..+ +.++.++++.|.++....  
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~  281 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD  281 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence            355666666666665421111   11122233 455666666665431    1223333 567788888888765433  


Q ss_pred             --ccccCCCCCCEEEccCCcCCC
Q 046382          258 --ESLSKCYLLGGLYLSDNHLSG  278 (691)
Q Consensus       258 --~~~~~l~~L~~L~l~~n~~~~  278 (691)
                        ..+..++.++.+.++.|.+..
T Consensus       282 L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  282 LAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHhhhHHHHHhhcccCcccc
Confidence              345567788888888888864

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.04  E-value=0.0048  Score=56.63  Aligned_cols=84  Identities=15%  Similarity=0.180  Sum_probs=72.7

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      ....+.||++.|++. ..-..|+-++.|..|+++.|++. ..|..++++..+..+++.+|..+ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            456788999999987 55667888889999999999998 78888999999999999999887 7788899999999999


Q ss_pred             ccCCccc
Q 046382          568 VAYNNLS  574 (691)
Q Consensus       568 l~~N~l~  574 (691)
                      +.+|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999865

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.03  E-value=0.0017  Score=68.92  Aligned_cols=84  Identities=26%  Similarity=0.226  Sum_probs=36.3

Q ss_pred             CCEEEccCCcccccCC----cCccCCCccCEEEccCCcCcccCchhhhhCC----CCCcEEEccCCccccc----Cchhh
Q 046382          120 LVMLLLANNSLFGSFR----MPIHSHQNLATLDVSNNFFHGHIPVEIGTYL----PGLMDLNLSRNAFNGS----IPSSF  187 (691)
Q Consensus       120 L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l----~~L~~L~L~~n~i~~~----~~~~~  187 (691)
                      +.+|.|.+|.+.....    ..+...+.|..|++++|.+.+..-..+...+    ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4555555555433211    2234455566666666655532222222211    1234444444444422    22333


Q ss_pred             hCCCCCCEEecccccc
Q 046382          188 ADMKMLERLDISDNQL  203 (691)
Q Consensus       188 ~~l~~L~~L~L~~n~l  203 (691)
                      .....++.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            3344555555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.30  E-value=0.087  Score=27.00  Aligned_cols=13  Identities=62%  Similarity=0.731  Sum_probs=4.4

Q ss_pred             ccCEEEccCCcCc
Q 046382          143 NLATLDVSNNFFH  155 (691)
Q Consensus       143 ~L~~L~Ls~n~i~  155 (691)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.03  E-value=0.16  Score=29.42  Aligned_cols=15  Identities=40%  Similarity=0.521  Sum_probs=7.8

Q ss_pred             CcCCEEeCCCccccc
Q 046382          537 KQIESLDLSYNLLHG  551 (691)
Q Consensus       537 ~~L~~L~Ls~N~l~~  551 (691)
                      ++|+.|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            445555555555553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.03  E-value=0.16  Score=29.42  Aligned_cols=15  Identities=40%  Similarity=0.521  Sum_probs=7.8

Q ss_pred             CcCCEEeCCCccccc
Q 046382          537 KQIESLDLSYNLLHG  551 (691)
Q Consensus       537 ~~L~~L~Ls~N~l~~  551 (691)
                      ++|+.|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            445555555555553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.60  E-value=0.038  Score=49.99  Aligned_cols=83  Identities=18%  Similarity=0.237  Sum_probs=44.6

Q ss_pred             CCCEEEccCCcccccCCcCccCCCccCEEEccCCcC-cccCchhhhhCCCCCcEEEccCCc-ccccCchhhhCCCCCCEE
Q 046382          119 NLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFF-HGHIPVEIGTYLPGLMDLNLSRNA-FNGSIPSSFADMKMLERL  196 (691)
Q Consensus       119 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i-~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L  196 (691)
                      .++.+|-+++.|....-..+..++.++.|.+.+|.- .+.--..+....++|+.|++++|. |+...-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            355566666665555444555566666666666532 111111222234677777777654 554444556666666666


Q ss_pred             ecccc
Q 046382          197 DISDN  201 (691)
Q Consensus       197 ~L~~n  201 (691)
                      .+.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            66543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.43  E-value=0.22  Score=28.77  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=14.0

Q ss_pred             ccCCCeEeCCCCcCCcccchhh
Q 046382          512 LSGIHALNLSHNNLTGTIPTTF  533 (691)
Q Consensus       512 l~~L~~L~Ls~N~l~~~~p~~~  533 (691)
                      +++|+.|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3567777777777775544444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.43  E-value=0.22  Score=28.77  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=14.0

Q ss_pred             ccCCCeEeCCCCcCCcccchhh
Q 046382          512 LSGIHALNLSHNNLTGTIPTTF  533 (691)
Q Consensus       512 l~~L~~L~Ls~N~l~~~~p~~~  533 (691)
                      +++|+.|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3567777777777775544444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.43  E-value=0.01  Score=54.58  Aligned_cols=88  Identities=22%  Similarity=0.236  Sum_probs=75.1

Q ss_pred             hhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCc
Q 046382          507 TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTF  586 (691)
Q Consensus       507 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~  586 (691)
                      ..+......+.||++.|++. -.-..|+-++.|..||++.|++. ..|..+..+..+..+++.+|.++..+-+..+.+..
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP  113 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence            45677889999999999997 44566888999999999999998 78888999899999999999998877777777788


Q ss_pred             CcCcccCCCC
Q 046382          587 EEDSYEGNPF  596 (691)
Q Consensus       587 ~~~~~~~Np~  596 (691)
                      +..+..+||+
T Consensus       114 k~~e~k~~~~  123 (326)
T KOG0473|consen  114 KKNEQKKTEF  123 (326)
T ss_pred             chhhhccCcc
Confidence            8888888874

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.97  E-value=0.045  Score=49.54  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=46.2

Q ss_pred             CCcEEEccCCcccccCchhhhCCCCCCEEecccccccc-ccchhHhhcCCCCCEEEcccc-cCCccCcccccCCCCCCEE
Q 046382          168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG-EIPERMATGCFSLKILALSNN-SLQGHIFSKKFNLTNLMRL  245 (691)
Q Consensus       168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  245 (691)
                      .++.++.+++.|..+.-+.+..++.++.|.+.+|.--+ .--..+....++|+.|++++| +|++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            56777777777776666667777777777777765321 111122223456666666654 3444333444455555555


Q ss_pred             EccC
Q 046382          246 QLDG  249 (691)
Q Consensus       246 ~L~~  249 (691)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.63  E-value=0.15  Score=28.83  Aligned_cols=14  Identities=43%  Similarity=0.624  Sum_probs=5.7

Q ss_pred             CcCCEEeCCCcccc
Q 046382          537 KQIESLDLSYNLLH  550 (691)
Q Consensus       537 ~~L~~L~Ls~N~l~  550 (691)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34445555555444

...

>TIGR00864 PCC polycystin cation channel protein

Probab=84.02  E-value=0.41  Score=60.02  Aligned_cols=39  Identities=28%  Similarity=0.376  Sum_probs=26.2

Q ss_pred             eCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCCCCC
Q 046382          543 DLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK  604 (691)
Q Consensus       543 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~~  604 (691)
                      ||++|+|+.+.+..|..+++|+.|+|                       +||||.|+|.+.+
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdL-----------------------sgNPw~CDC~L~W   39 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDL-----------------------SGNPFECDCGLAR   39 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEe-----------------------eCCccccccccHH
Confidence            56777777666666666666666554                       5677888887653

Note: this model has been restricted to the amino half because for technical reasons.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	691
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-36
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-36
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-17
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		1e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		1e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-05
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		3e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		5e-04
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		7e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		7e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 163/576 (28%), Positives = 246/576 (42%), Gaps = 123/576 (21%)
Query: 144 LATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQL 203
           L  L +S N   G + V   +    L  L++S N F+  IP    D   L+ LDIS N+L
Sbjct: 180 LKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 204 TGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLS-K 262
           +G+    ++T C  LK+L +S+N   G I      L +L  L L  NKF GEIP+ LS  
Sbjct: 236 SGDFSRAIST-CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQLSALKILDLSN 321
           C  L GL LS NH  G +P + G+ S LE + + +NN  G +P++   ++  LK+LDLS 
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 322 NSIFGTLPS---------------------------CFSPAH-IEQVHLSKNKIEGRLES 353
           N   G LP                            C +P + +++++L  N   G++  
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 354 IIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 413
            + +   LV+L LS+N L G+IP+ +  L +L  L L  N ++GEIP +L  +K +  + 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 414 LSHNNLSGHIPSCLVNTA----LSGGHHEAVAPTSIWCGR----ASVYISACLPSRSAPP 465
           L  N+L+G IPS L N      +S  ++        W GR    A + +S    S + P 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 466 -MGKEETVQFTTKNMSYYYQGRILTSM----------------------SGIDLSCN--- 499
            +G   ++ +   N + +  G I  +M                       G+   C+   
Sbjct: 533 ELGDCRSLIWLDLNTNLF-NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 500 ---KLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP-- 554
              +  G    Q+  LS  +  N++     G    TF N   +  LD+SYN+L G IP  
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 555 ----PQLIVLN------------------------------------------TLEVFKV 568
               P L +LN                                           L    +
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 569 AYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK 604
           + NNLSG IP+  QF TF    +  NP LCG PL +
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 162/575 (28%), Positives = 246/575 (42%), Gaps = 121/575 (21%)
Query: 144 LATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQL 203
           L  L +S N   G + V   +    L  L++S N F+  IP    D   L+ LDIS N+L
Sbjct: 177 LKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 204 TGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLS-K 262
           +G+    ++T C  LK+L +S+N   G I      L +L  L L  NKF GEIP+ LS  
Sbjct: 233 SGDFSRAIST-CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQLSALKILDLSN 321
           C  L GL LS NH  G +P + G+ S LE + + +NN  G +P++   ++  LK+LDLS 
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 322 NSIFGTLPS---------------------------CFSPAH-IEQVHLSKNKIEGRLES 353
           N   G LP                            C +P + +++++L  N   G++  
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 354 IIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 413
            + +   LV+L LS+N L G+IP+ +  L +L  L L  N ++GEIP +L  +K +  + 
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 414 LSHNNLSGHIPSCLVNTA----LSGGHHEAVAPTSIWCGR----ASVYISACLPSRSAPP 465
           L  N+L+G IPS L N      +S  ++        W GR    A + +S    S + P 
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 466 -MGKEETVQFTTKNMSYY----------YQGRILTSM-----------SGIDLSCN---- 499
            +G   ++ +   N + +            G+I  +             G+   C+    
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 500 --KLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP--- 554
             +  G    Q+  LS  +  N++     G    TF N   +  LD+SYN+L G IP   
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 555 ---PQLIVLN------------------------------------------TLEVFKVA 569
              P L +LN                                           L    ++
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 570 YNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK 604
            NNLSG IP+  QF TF    +  NP LCG PL +
Sbjct: 710 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 115/262 (43%), Gaps = 30/262 (11%)
Query: 351 LESIIHDSPYLVTLDLS-YNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV 409
           + S + + PYL  L +   N L G IP  I +L QL+YL + H  + G IP  L Q+K +
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 410 RLIDLSHNNLSGHIPSC------LVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSA 463
             +D S+N LSG +P        LV     G       P S   G  S   ++   SR+ 
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNR 185
Query: 464 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHN 523
             +  +    F   N+++            +DLS N L G+     G       ++L+ N
Sbjct: 186 --LTGKIPPTFANLNLAF------------VDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 524 NLT---GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR 580
           +L    G +  +    K +  LDL  N ++G +P  L  L  L    V++NNL G+IP  
Sbjct: 232 SLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 581 AQFSTFEEDSYEGNPFLCGKPL 602
                F+  +Y  N  LCG PL
Sbjct: 288 GNLQRFDVSAYANNKCLCGSPL 309

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 154/382 (40%), Gaps = 56/382 (14%)
Query: 179 FNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN 238
           FNG   S+   + +    DI D     +I   M  G   + + +L+   LQ H FS   +
Sbjct: 216 FNGLQNSTTQSLWLGTFEDIDDE----DISSAMLKGLCEMSVESLN---LQEHRFSDISS 268
Query: 239 -----LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGI 293
                 T L  L L      G +P  +    LL  L LS NH          N  +L  +
Sbjct: 269 TTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHL 327
Query: 294 RMPNNNLEGPIPIEFCQ-LSALKILDLSNNSIFGTLPSCFSP-----AHIEQVHLSKNKI 347
            +  N  +  + +   + L  L+ LDLS+N I  +   C S      +H++ ++LS N+ 
Sbjct: 328 YIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS--DCCSLQLKNLSHLQTLNLSHNEP 385
Query: 348 EGRLESIIHDSPYLVTLDLSYNRLHGSIPNR-IDRLPQLNYLLLAHNYIKGEIPVQLCQL 406
            G       + P L  LDL++ RLH + P      L  L  L L + ++       L  L
Sbjct: 386 LGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGL 445
Query: 407 KEVRLIDLSHNNL-SGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPP 465
             +R ++L  N+   G I     N   + G  E +  +S  CG  S+             
Sbjct: 446 PVLRHLNLKGNHFQDGTITK--TNLLQTVGSLEVLILSS--CGLLSI------------- 488
Query: 466 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNL 525
                         +++  G+    MS +DLS N LT +    + +L GI+ LNL+ N++
Sbjct: 489 -----------DQQAFHSLGK----MSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSI 532
Query: 526 TGTIPTTFSNLKQIESLDLSYN 547
               P     L Q  +++LS+N
Sbjct: 533 NIISPRLLPILSQQSTINLSHN 554

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 162/433 (37%), Gaps = 59/433 (13%)
Query: 157 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCF 216
           HIP ++ +    +  LNL+ N      P++F     L  LD   N ++   PE +     
Sbjct: 18  HIPDDLPS---NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILP 73
Query: 217 SLKILALSNNSLQGHIFSKKFNL-TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 275
            LK+L L +N L   I  + F   TNL  L L  N               L  L LS N 
Sbjct: 74  LLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 276 LSG-EIPRWLGNLSALEGIRMPNNNLE-GPIPIEFCQLSALKILDLSNNSIFGTLPSCF- 332
           LS  ++   +   +  E +   N  L      +EF   S+L+ LDLS+N +    P CF 
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQ 192
Query: 333 ---------------------------SPAHIEQVHLSKNKIEGRLESIIHDSPY--LVT 363
                                      S   I+ + L+ N++    ES      +  L  
Sbjct: 193 TIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQ 252
Query: 364 LDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI 423
           LDLSYN LH         LP L YL L +N I+   P     L  +R + L         
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR------- 305
Query: 424 PSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYY 483
                  ++S   H  +   S    +   Y++      +  P  K  T    T  +S  Y
Sbjct: 306 --AFTKQSVSLASHPNIDDFSFQWLKYLEYLNM---DDNNIPSTKSNTF---TGLVSLKY 357
Query: 484 QGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLD 543
                 S+S    S   LT E    + + S +  LNL+ N+++     TFS L Q+  LD
Sbjct: 358 -----LSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGTFSWLGQLRILD 411
Query: 544 LSYNLLHGKIPPQ 556
           L  N +  K+  Q
Sbjct: 412 LGLNEIEQKLSGQ 424

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 142/333 (42%), Gaps = 60/333 (18%)
Query: 99  DLSHLNLSGQFPNWLLENNT-----NLVMLLLANNSLFGSFRMPIHSHQNLATLDV---- 149
           DL  L +  Q P  ++ NNT     +L++L L  N      ++   +   LA L+V    
Sbjct: 55  DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANLEVLTLT 111
Query: 150 ---------SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF-ADMKMLERLDIS 199
                    S NFF     +E+         L L  N      P+SF  +M+    LD++
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEM---------LVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 200 DNQLTGEIPERMATGCFSLK---ILALSNNSLQG--------HIFSKKFNLTNLMRLQLD 248
            N++     E +    F  K   +L LS+ +LQ               F  T++  L L 
Sbjct: 163 FNKVKSICEEDLLN--FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220
Query: 249 GNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF 308
           GN F     ES++K +        D     +I   + + S   G    + N + P    F
Sbjct: 221 GNGF----KESMAKRFF-------DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 309 CQLSA--LKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
             L A  +K  DLS + IF  L S FS    +EQ+ L++N+I    ++      +L+ L+
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 366 LSYNRLHGSIPNRI-DRLPQLNYLLLAHNYIKG 397
           LS N L GSI +R+ + L +L  L L++N+I+ 
Sbjct: 330 LSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 50/305 (16%)
Query: 266 LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325
           L  L L+  HLS E+P  L  LS L+ + +  N  E       CQ+SA     L++ SI 
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-----LCQISASNFPSLTHLSIK 333
Query: 326 GTLP------SCFSP-AHIEQVHLSKNKIEG------RLESIIHDSPYLVTLDLSYNRLH 372
           G          C     ++ ++ LS + IE       +L ++ H    L +L+LSYN   
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH----LQSLNLSYNEPL 389
Query: 373 GSIPNRIDRLPQLNYLLLAHNYIK---GEIPVQLCQLKEV-----RLIDLSHNNLSGHIP 424
                     PQL  L LA   +K    + P Q   L +V      L+D+S   L   +P
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449
Query: 425 SCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQ 484
           + L +  L G H            + ++       + S   +G+ E +  +  ++S   Q
Sbjct: 450 A-LQHLNLQGNHFP----------KGNIQ-----KTNSLQTLGRLEILVLSFCDLSSIDQ 493
Query: 485 GRI--LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESL 542
                L  M+ +DLS N+LT      + +L GI+ LNL+ N+++  +P+    L Q  ++
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTI 552
Query: 543 DLSYN 547
           +L  N
Sbjct: 553 NLRQN 557

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Query: 94  DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF 153
           D K  DL    LS   P+      T L +L L +N L           +NL TL V++N 
Sbjct: 38  DTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
               +P+ +   L  L +L L RN      P  F  +  L  L +  N+L   +P+ +  
Sbjct: 97  LQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154
Query: 214 GCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE 258
              SLK L L NN L+         LT L  L+LD N+ +  +PE
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPE 198

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 28/275 (10%)
Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH 231
           L+L +N         FA    LE L++++N ++   P       F+L+ L L +N L+  
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNRLKLI 95
Query: 232 IFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALE 291
                  L+NL +L +  NK +  +       Y L  L + DN L     R    L++LE
Sbjct: 96  PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 292 GIRMPNNNLEGPIPIE-------------------------FCQLSALKILDLSNNSIFG 326
            + +   NL   IP E                         F +L  LK+L++S+     
Sbjct: 156 QLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214
Query: 327 TL-PSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQL 385
           T+ P+C    ++  + ++   +       +    YL  L+LSYN +     + +  L +L
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 386 NYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
             + L    +    P     L  +R++++S N L+
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 134/329 (40%), Gaps = 60/329 (18%)
Query: 99  DLSHLNLSGQFPNWLLENNT-----NLVMLLLANNSLFGSFRMPIHSHQNLATLDV---- 149
           DL  L +  Q P  ++ NNT     +L++L L  N      ++   +   LA L+V    
Sbjct: 55  DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL---QLETGAFNGLANLEVLTLT 111
Query: 150 ---------SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF-ADMKMLERLDIS 199
                    S NFF     +E+         L L  N      P+SF  +M+    LD++
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEM---------LVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
Query: 200 DNQLTGEIPERMATGCFSLK---ILALSNNSLQG--------HIFSKKFNLTNLMRLQLD 248
            N++     E +    F  K   +L LS+ +LQ               F  T++  L L 
Sbjct: 163 FNKVKSICEEDLLN--FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220
Query: 249 GNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF 308
           GN F     ES++K +        D     +I   + + S   G    + N + P    F
Sbjct: 221 GNGF----KESMAKRFF-------DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 309 CQLSA--LKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
             L A  +K  DLS + IF  L S FS    +EQ+ L++N+I    ++      +L  L 
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELA 329
Query: 366 LSYNRLHGSIPNRI-DRLPQLNYLLLAHN 393
           L  N+L  S+P+ I DRL  L  + L  N
Sbjct: 330 LDTNQLK-SVPDGIFDRLTSLQKIWLHTN 357

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 46/220 (20%)
Query: 183 IPSSFAD-MKMLERLDISDNQLTGE-IPERMATGCF-SLKILALSNNSLQ-----GHIFS 234
           +P SF+  +K LE LD+S+N +  E +      G + SL+ L LS N L+     G I  
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL- 383
Query: 235 KKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIR 294
               L NL  L +  N F   +P+S   C               E  R+L NLS+  GIR
Sbjct: 384 --LTLKNLTSLDISRNTF-HPMPDS---CQW------------PEKMRFL-NLSS-TGIR 423
Query: 295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESI 354
           +          ++ C    L++LD+SNN++     S F P  ++++++S+NK++   ++ 
Sbjct: 424 V----------VKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLKTLPDAS 470
Query: 355 IHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHN 393
           +   P L+ + +S N+L  S+P+ I DRL  L  + L  N
Sbjct: 471 LF--PVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	691
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-147
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-80
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  446 bits (1149), Expect = e-147
 Identities = 191/648 (29%), Positives = 279/648 (43%), Gaps = 65/648 (10%)

Query: 14  SLMHLISMEKLILSNNHFF-QIPISLEPLFNLSKLKTFD-------GEI----CAETES- 60
             + L S+E L LS N       +         +LK          G++    C   E  
Sbjct: 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205

Query: 61  --HYNSLT---PKF----QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPN 111
               N+ +   P       L  + +SG    G F + +    +LK  ++S     G  P 
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

Query: 112 WLLENNTNLVMLLLANNSLFGSFRMPI-HSHQNLATLDVSNNFFHGHIPVEIGTYLPGLM 170
             L    +L  L LA N   G     +  +   L  LD+S N F+G +P   G+    L 
Sbjct: 266 LPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLE 321

Query: 171 DLNLSRNAFNGSIP-SSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229
            L LS N F+G +P  +   M+ L+ LD+S N+ +GE+PE +     SL  L LS+N+  
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 230 GHIFSK--KFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNL 287
           G I     +     L  L L  N F G+IP +LS C  L  L+LS N+LSG IP  LG+L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 288 SALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKI 347
           S L  +++  N LEG IP E   +  L+ L L  N + G +PS  S              
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-------------- 487

Query: 348 EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK 407
                    +   L  + LS NRL G IP  I RL  L  L L++N   G IP +L   +
Sbjct: 488 ---------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 408 EVRLIDLSHNNLSGHIPSCLVN--TALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPP 465
            +  +DL+ N  +G IP+ +      ++           I                    
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 466 MGKEETVQFTTKNM----SYYYQGRI------LTSMSGIDLSCNKLTGEIPTQIGYLSGI 515
           +  E+  + +T+N     S  Y G          SM  +D+S N L+G IP +IG +  +
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658

Query: 516 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG 575
             LNL HN+++G+IP    +L+ +  LDLS N L G+IP  +  L  L    ++ NNLSG
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

Query: 576 KIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQ 623
            IP+  QF TF    +  NP LCG PL +    N       + S  + 
Sbjct: 719 PIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  290 bits (744), Expect = 1e-87
 Identities = 123/437 (28%), Positives = 191/437 (43%), Gaps = 40/437 (9%)

Query: 2   SLTINLLKTSLISLMHLISMEKLILSNNHFF-QIPISLEPLFNLSKLKTFDGEICAETES 60
            L+ + +  S+       S+  L LS N     +      L + S LK  +         
Sbjct: 83  FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLN--------- 132

Query: 61  HYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENN--T 118
                     ++S +L          K     + L+  DLS  ++SG      + ++   
Sbjct: 133 ----------VSSNTLDFPGKVSGGLKL----NSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 119 NLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNA 178
            L  L ++ N + G     +    NL  LDVS+N F   IP  +G     L  L++S N 
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLG-DCSALQHLDISGNK 234

Query: 179 FNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHI-FSKKF 237
            +G    + +    L+ L+IS NQ  G IP        SL+ L+L+ N   G I      
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSG 291

Query: 238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPR-WLGNLSALEGIRMP 296
               L  L L GN F G +P     C LL  L LS N+ SGE+P   L  +  L+ + + 
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351

Query: 297 NNNLEGPIPIEFCQLSA-LKILDLSNNSIFGTLPSCF---SPAHIEQVHLSKNKIEGRLE 352
            N   G +P     LSA L  LDLS+N+  G +           +++++L  N   G++ 
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

Query: 353 SIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 412
             + +   LV+L LS+N L G+IP+ +  L +L  L L  N ++GEIP +L  +K +  +
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471

Query: 413 DLSHNNLSGHIPSCLVN 429
            L  N+L+G IPS L N
Sbjct: 472 ILDFNDLTGEIPSGLSN 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  270 bits (693), Expect = 2e-80
 Identities = 130/426 (30%), Positives = 189/426 (44%), Gaps = 43/426 (10%)

Query: 14  SLMHLISMEKLILSNNHFF-QIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLT 72
           SL+ L  +E L LSN+H    +          + L + D                   L+
Sbjct: 72  SLLSLTGLESLFLSNSHINGSVS----GFKCSASLTSLD-------------------LS 108

Query: 73  SISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFG 132
             SLSG +   T    L     LK  ++S   L             +L +L L+ NS+ G
Sbjct: 109 RNSLSGPV---TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 133 SFRMPIHSHQN---LATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 189
           +  +          L  L +S N   G + V   +    L  L++S N F+  IP    D
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIP-FLGD 221

Query: 190 MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDG 249
              L+ LDIS N+L+G+    ++  C  LK+L +S+N   G I      L +L  L L  
Sbjct: 222 CSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAE 278

Query: 250 NKFIGEIPESLS-KCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE- 307
           NKF GEIP+ LS  C  L GL LS NH  G +P + G+ S LE + + +NN  G +P++ 
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

Query: 308 FCQLSALKILDLSNNSIFGTLPSCFS--PAHIEQVHLSKNKIEGRLESIIHDSP--YLVT 363
             ++  LK+LDLS N   G LP   +   A +  + LS N   G +   +  +P   L  
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 364 LDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI 423
           L L  N   G IP  +    +L  L L+ NY+ G IP  L  L ++R + L  N L G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 424 PSCLVN 429
           P  L+ 
Sbjct: 459 PQELMY 464

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  249 bits (637), Expect = 2e-72
 Identities = 105/373 (28%), Positives = 163/373 (43%), Gaps = 22/373 (5%)

Query: 71  LTSISLSG---YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLAN 127
           +TSI LS     +        L     L++  LS+ +++G       + + +L  L L+ 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSR 109

Query: 128 NSLFGSF--RMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 185
           NSL G       + S   L  L+VS+N       V  G  L  L  L+LS N+ +G+   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 186 SFAD---MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNL 242
            +        L+ L IS N+++G++     + C +L+ L +S+N+    I     + + L
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSAL 225

Query: 243 MRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG 302
             L + GNK  G+   ++S C  L  L +S N   G IP     L +L+ + +  N   G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283

Query: 303 PIPIEFC-QLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRL-ESIIHDSP 359
            IP         L  LDLS N  +G +P  F   + +E + LS N   G L    +    
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 360 YLVTLDLSYNRLHGSIPNRIDRL-PQLNYLLLAHNYIKGEIPVQLCQ--LKEVRLIDLSH 416
            L  LDLS+N   G +P  +  L   L  L L+ N   G I   LCQ     ++ + L +
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 417 NNLSGHIPSCLVN 429
           N  +G IP  L N
Sbjct: 404 NGFTGKIPPTLSN 416

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.3 bits (230), Expect = 2e-19
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 12/155 (7%)

Query: 282 RWLG---NLSALEGIRMPNNNLE---GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPA 335
            + G       +  I + +  L      +      L+ L+ L LSN+ I G++      A
Sbjct: 41  TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA 100

Query: 336 HIEQVHLSKNKIEGRLESIIHDS--PYLVTLDLSYNRLHGSIP-NRIDRLPQLNYLLLAH 392
            +  + LS+N + G + ++        L  L++S N L      +   +L  L  L L+ 
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 393 NYIKGEIPVQLCQ---LKEVRLIDLSHNNLSGHIP 424
           N I G   V         E++ + +S N +SG + 
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 1e-15
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPT--QIGYLSGIHALNLSHNNLTGTIPTT-FSNLKQIESLDL 544
             S++ +DLS N L+G + T   +G  SG+  LN+S N L      +    L  +E LDL
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 545 SYNLLHGKIPPQLIV---LNTLEVFKVAYNNLSGKIP 578
           S N + G      ++      L+   ++ N +SG + 
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.0 bits (193), Expect = 4e-15
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT--TFSNLKQIESLDLS 545
           LT +  + LS + + G +       + + +L+LS N+L+G + T  +  +   ++ L++S
Sbjct: 76  LTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 546 YNLLHGKIP-PQLIVLNTLEVFKVAYNNLSGKIPD 579
            N L         + LN+LEV  ++ N++SG    
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 2e-12
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 492 SGIDLSCNKLT---GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 548
           + IDLS   L      + + +  L+G+ +L LS++++ G++   F     + SLDLS N 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111

Query: 549 LHGKIPP--QLIVLNTLEVFKVAYNNLSGKIP 578
           L G +     L   + L+   V+ N L     
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 515 IHALNLSHNNLT---GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN 571
           + +++LS   L      + ++  +L  +ESL LS + ++G +        +L    ++ N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRN 110

Query: 572 NLSGKIPDRAQFS 584
           +LSG +       
Sbjct: 111 SLSGPVTTLTSLG 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  235 bits (601), Expect = 4e-68
 Identities = 114/623 (18%), Positives = 206/623 (33%), Gaps = 67/623 (10%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
               L  ++ L L +N   Q+          + L        +  +   N    +  L +
Sbjct: 68  LCQKLPMLKVLNLQHNELSQLSDKT--FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 74  ISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWL-LENNTNLVMLLLANN 128
           + LS         GT  +      +L+   LS+  +       L +  N++L  L L++N
Sbjct: 126 LDLSHNGLSSTKLGTQVQL----ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 129 SLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPG--LMDLNLSRNAFNGSIPSS 186
            +        H+   L  L ++N      +  ++   L    + +L+LS +  + +  ++
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 187 FADMKM--LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMR 244
           F  +K   L  LD+S N L     +  A     L+   L  N++Q         L N+  
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 245 LQLDGNKFIGEI---------PESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM 295
           L L  +     I           S      L  L + DN + G        L  L+ + +
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 296 PNNNLEGPIPIE----FCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGR 350
            N+                 S L IL+L+ N I       FS   H+E + L  N+I   
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 351 LE-SIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKG--EIPVQLCQLK 407
           L          +  + LSYN+      N    +P L  L+L    +K     P     L+
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 408 EVRLIDLSHNNLSGHIPSCLVN-TALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPM 466
            + ++DLS+NN++      L     L                   + +     +R     
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLE-----------------ILDLQHNNLAR----- 518

Query: 467 GKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLT 526
                +          Y  + L+ +  ++L  N            L  +  ++L  NNL 
Sbjct: 519 -----LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 527 GTIPTTFSNLKQIESLDLSYNLLHGKIPPQL-IVLNTLEVFKVAYNNLSGKIPDRAQFST 585
               + F+N   ++SL+L  NL+              L    + +N         A F  
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 586 FEEDS-----YEGNPFLCGKPLS 603
           +  ++        + +LC  P  
Sbjct: 634 WINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  214 bits (547), Expect = 1e-60
 Identities = 102/568 (17%), Positives = 187/568 (32%), Gaps = 81/568 (14%)

Query: 94  DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF 153
           ++   +L+H  L    P       + L  L +  N++             L  L++ +N 
Sbjct: 26  NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
                      +   L +L+L  N+      + F   K L  LD+S N L+         
Sbjct: 85  LSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQV 142

Query: 214 GCFSLKILALSNNSLQGHIFS--KKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYL 271
              +L+ L LSNN +Q         F  ++L +L+L  N+     P        L GL+L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 272 SDNHLSGEIPRWLG---NLSALEGIRMPNNNLEGPIPIEF--CQLSALKILDLSNNSIFG 326
           ++  L   +   L      +++  + + N+ L       F   + + L +LDLS N++  
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 327 TLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN---------RLHGSIP 376
                F+    +E   L  N I+      +H    +  L+L  +          L     
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 377 NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN-----NLSGHIPSCLVNTA 431
                L  L +L +  N I G        L  ++ + LS++      L+      L ++ 
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 432 LSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSM 491
           L                   + ++    S+            F+            L  +
Sbjct: 383 LH-----------------ILNLTKNKISKIESDA-------FSW-----------LGHL 407

Query: 492 SGIDLSCNKLTGEIPTQ-IGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550
             +DL  N++  E+  Q    L  I  + LS+N        +F+ +  ++ L L    L 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 551 G--KIPPQLIVLNTLEVFKVAYNNLSGKIPD--------------RAQFSTFEEDSYEGN 594
                P     L  L +  ++ NN++    D                  +   + +  G 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 595 PFLCGKPLSK----SCNHNGLTTVTPEA 618
           P    K LS     +   NG   +  E 
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEV 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  201 bits (514), Expect = 5e-56
 Identities = 90/452 (19%), Positives = 157/452 (34%), Gaps = 23/452 (5%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ 202
           +    D S+      +P ++      +  LNL+ N       ++F     L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 203 LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSK 262
           ++   PE        LK+L L +N L           TNL  L L  N           K
Sbjct: 61  ISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF--CQLSALKILDLS 320
              L  L LS N LS         L  L+ + + NN ++     E      S+LK L+LS
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 321 NNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDS---PYLVTLDLSYNRLHGSIP 376
           +N I    P CF     +  + L+  ++   L   +        +  L LS ++L  +  
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 377 NRID--RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSG 434
                 +   L  L L++N +          L ++    L +NN+       L    L  
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG--LFN 297

Query: 435 GHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI--LTSMS 492
             +  +  +      +   +   +   S   +   E +     ++          L ++ 
Sbjct: 298 VRYLNLKRSFTKQSISLASLPK-IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 493 GIDLSCNKLTGEIPTQIG----YLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 548
            + LS +  +    T         S +H LNL+ N ++      FS L  +E LDL  N 
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 549 LHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPD 579
           +  ++  Q    L  +    ++YN       +
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (509), Expect = 2e-55
 Identities = 108/496 (21%), Positives = 166/496 (33%), Gaps = 85/496 (17%)

Query: 95  LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFF 154
            + AD SHL L+ Q P+ L    TN+ +L L +N L          +  L +LDV  N  
Sbjct: 6   HEVADCSHLKLT-QVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 155 HGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATG 214
               P      LP L  LNL  N  +     +FA    L  L +  N +   I       
Sbjct: 62  SKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVK 119

Query: 215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYL--LGGLYLS 272
             +L  L LS+N L       +  L NL  L L  NK      E L       L  L LS
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC---QLSALKILDLSNNSIFGTLP 329
            N +    P     +  L G+ + N  L   +  + C     ++++ L LSN+ +  T  
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 330 SCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLL 389
           + F                            L  LDLSYN L+    +    LPQL Y  
Sbjct: 240 TTFLGLKWTN---------------------LTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 390 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGR 449
           L +N I+      L  L  VR ++L  +             ++S      +   S     
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRS---------FTKQSISLASLPKIDDFSFQW-- 327

Query: 450 ASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI 509
                                                 L  +  +++  N + G      
Sbjct: 328 --------------------------------------LKCLEHLNMEDNDIPGIKSNMF 349

Query: 510 GYLSGIHALNLSHNNLTGTIPT--TFSNLKQ--IESLDLSYNLLHGKIPPQLIVLNTLEV 565
             L  +  L+LS++  +    T  TF +L    +  L+L+ N +          L  LEV
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 566 FKVAYNNLSGKIPDRA 581
             +  N +  ++  + 
Sbjct: 410 LDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  193 bits (493), Expect = 3e-53
 Identities = 89/457 (19%), Positives = 148/457 (32%), Gaps = 43/457 (9%)

Query: 5   INLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNS 64
           I  LK+  + +    S++KL LS+N   +          + +L            S    
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGC--FHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 65  LTPKFQLTSI---SLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSG----QFPNWL 113
           L  +   TSI   SLS          TF         LK  +L+ L+LS        N  
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTF-------LGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGH--------IPVEIGTY 165
                 L    L  N++   F   +H   N+  L++  +F            I      +
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMA---TGCFSLKILA 222
           L  L  LN+  N   G   + F  +  L+ L +S++  +                L IL 
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 223 LSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNHLSGEIP 281
           L+ N +          L +L  L L  N+   E+  +       +  +YLS N       
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 282 RWLGNLSALEGIRMPNNNLEG--PIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIE 338
                + +L+ + +    L+     P  F  L  L ILDLSNN+I             +E
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 339 QVHLSKNKIE--------GRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLL 390
            + L  N +         G     +    +L  L+L  N            L +L  + L
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567

Query: 391 AHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
             N +             ++ ++L  N ++       
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  188 bits (480), Expect = 2e-51
 Identities = 90/452 (19%), Positives = 156/452 (34%), Gaps = 54/452 (11%)

Query: 2   SLTINLLKTSLI--SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETE 59
           +LT N L   L   +      +  L +  N   ++   L     L  LK  +        
Sbjct: 31  NLTHNQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPEL--CQKLPMLKVLN-------- 79

Query: 60  SHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTN 119
                      L    LS   D            +L    L   ++     N       N
Sbjct: 80  -----------LQHNELSQLSDKT-----FAFCTNLTELHLMSNSIQK-IKNNPFVKQKN 122

Query: 120 LVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY-LPGLMDLNLSRNA 178
           L+ L L++N L  +        +NL  L +SNN        E+  +    L  L LS N 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 179 FNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCF--SLKILALSNNSLQGHIFS-- 234
                P  F  +  L  L +++ QL   + E++       S++ L+LSN+ L     +  
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 235 KKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIR 294
                TNL  L L  N       +S +    L   +L  N++       L  L  +  + 
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 295 MPNN---------NLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSK 344
           +  +         +L       F  L  L+ L++ +N I G   + F+   +++ + LS 
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 345 NKIEGRLESIIHDS------PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE 398
           +     L ++ +++        L  L+L+ N++     +    L  L  L L  N I  E
Sbjct: 363 SFTS--LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 399 IPVQ-LCQLKEVRLIDLSHNNLSGHIPSCLVN 429
           +  Q    L+ +  I LS+N       +    
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  180 bits (459), Expect = 1e-48
 Identities = 84/436 (19%), Positives = 139/436 (31%), Gaps = 45/436 (10%)

Query: 19  ISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSG 78
           +S E    S+    Q+P  L      + +   +            + T   QLTS+ +  
Sbjct: 4   VSHEVADCSHLKLTQVPDDL-----PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 79  ----YIDGGTFPKFLYHQHDLKNADLSHLNLSG----QFPNWLLENNTNLVMLLLANNSL 130
                ++             L    L  LNL      Q  +      TNL  L L +NS+
Sbjct: 59  NTISKLEPELC-------QKLPM--LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109

Query: 131 FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 190
                 P    +NL TLD+S+N             L  L +L LS N             
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIF 168

Query: 191 KM--LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHI---FSKKFNLTNLMRL 245
               L++L++S NQ+    P         L  L L+N  L   +      +   T++  L
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 246 QLDGNKFIGEIPESLSKCYL--LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
            L  ++       +        L  L LS N+L+         L  LE   +  NN++  
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 304 IPIEFCQLSALKILDLSNNSIFGTL---------PSCFSP-AHIEQVHLSKNKIEGRLES 353
                  L  ++ L+L  +    ++            F     +E +++  N I G   +
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 354 IIHDSPYLVTLDLSYNRLHGSIPNRID----RLPQLNYLLLAHNYIKGEIPVQLCQLKEV 409
           +      L  L LS +                   L+ L L  N I          L  +
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 410 RLIDLSHNNLSGHIPS 425
            ++DL  N +   +  
Sbjct: 408 EVLDLGLNEIGQELTG 423

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  151 bits (384), Expect = 1e-38
 Identities = 83/429 (19%), Positives = 129/429 (30%), Gaps = 56/429 (13%)

Query: 14  SLMHLISMEKLILSNNHFFQI-PISLEPLFNLSKL------KTFDGEICAETESHYNSLT 66
           S   L  +E   L  N+   +   SL  LFN+  L            + +  +    S  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 67  PKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQ-FPNWLLEN--NTN 119
               L  +++       I    F        +LK   LS+   S +   N    +  ++ 
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGL----INLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 120 LVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAF 179
           L +L L  N +            +L  LD+  N     +  +    L  + ++ LS N +
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 180 NGSIPSSFADMKMLERLDISDNQLTGEIPERMA-TGCFSLKILALSNNSLQGHIFSKKFN 238
                +SFA +  L+RL +    L              +L IL LSNN++          
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

Query: 239 LTNLMRLQLDGNK--------FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSAL 290
           L  L  L L  N           G     L     L  L L  N           +L  L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 291 EGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGR 350
           + I +  NNL       F    +LK L+L  N I       F PA               
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA--------------- 607

Query: 351 LESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLC----QL 406
                     L  LD+ +N    +  +       +N++   H  I       LC      
Sbjct: 608 -------FRNLTELDMRFNPFDCTCES---IAWFVNWINETHTNIPELSSHYLCNTPPHY 657

Query: 407 KEVRLIDLS 415
               +    
Sbjct: 658 HGFPVRLFD 666

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  223 bits (571), Expect = 3e-64
 Identities = 81/563 (14%), Positives = 181/563 (32%), Gaps = 72/563 (12%)

Query: 49  TFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQ 108
            F+ E+         SL    ++T +SL G+   G  P  +    +L+   L        
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 109 FPNWL---LENNTNLVMLLLANNSLFGSF--RMPIHSHQNLATLDVSNNFFHGHIPVEIG 163
              +    +  N +             +F    P     +L    ++++     I     
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 164 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILAL 223
             L     +    N     +  +   +  L +  + ++    E        C + +    
Sbjct: 181 ITLK-DTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENS 232

Query: 224 SNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL------- 276
                      K  NL +L  +++     + ++P  L     +  + ++ N         
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 277 -SGEIPRWLGNLSALEGIRMPNNNL-EGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP 334
              +          ++ I +  NNL   P+     ++  L +L+   N + G LP+  S 
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352

Query: 335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNR--IDRLPQLNYLLLAH 392
             +  ++L+ N+I     +    +  +  L  ++N+L   IPN      +  ++ +  ++
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411

Query: 393 NYIKG-------EIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN-TALSGGHHEAVAPTS 444
           N I          +     +   V  I+LS+N +S          + LS           
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS----------- 460

Query: 445 IWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE 504
                 S+ +   + +       K+E   F                ++ IDL  NKLT  
Sbjct: 461 ------SINLMGNMLTEIPKNSLKDENENFKN-----------TYLLTSIDLRFNKLTK- 502

Query: 505 IPTQIGY--LSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL------LHGKIPPQ 556
           +        L  +  ++LS+N+ +   PT   N   ++   +             + P  
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 557 LIVLNTLEVFKVAYNNLSGKIPD 579
           + +  +L   ++  N++   + +
Sbjct: 562 ITLCPSLTQLQIGSNDIRK-VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  194 bits (494), Expect = 1e-53
 Identities = 68/461 (14%), Positives = 145/461 (31%), Gaps = 56/461 (12%)

Query: 5   INLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNS 64
               K+   S    +   ++   +N+   +  ++     L+KL+ F            + 
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV---MRLTKLRQFYM--------GNSP 217

Query: 65  LT---PKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLV 121
                      + +        T      +  DL + ++ +     + P +L +    + 
Sbjct: 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQ 276

Query: 122 MLLLANNSLFGSFRMP--------IHSHQNLATLDVS-NNFFHGHIPVEIGTYLPGLMDL 172
           ++ +A N      ++             + +  + +  NN     +   +   +  L  L
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGML 335

Query: 173 NLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHI 232
               N   G +P+ F     L  L+++ NQ+T  IP         ++ L+ ++N L+   
Sbjct: 336 ECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIP 393

Query: 233 FSKKF-NLTNLMRLQLDGNKF-------IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWL 284
                 +++ +  +    N+           +  +  K   +  + LS+N +S       
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 285 GNLSALEGIRMPNNNLEG-------PIPIEFCQLSALKILDLSNNSIFGTLPSCFSPA-- 335
              S L  I +  N L              F     L  +DL  N +   L   F     
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTL 512

Query: 336 -HIEQVHLSKNKIEGRLESIIHDSPYLVTL------DLSYNRLHGSIPNRIDRLPQLNYL 388
            ++  + LS N       +   +S  L         D   NR     P  I   P L  L
Sbjct: 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 389 LLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
            +  N I+  +  ++     + ++D+  N       S +  
Sbjct: 572 QIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  189 bits (481), Expect = 9e-52
 Identities = 73/447 (16%), Positives = 133/447 (29%), Gaps = 50/447 (11%)

Query: 14  SLMHLISMEKLILSNNHFFQIPIS----LEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
           ++M L  + +  + N+ F    I      E      + KT D +         ++L    
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW--------DNLK--- 249

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWL-------LENNTNLVM 122
            LT + +    +    P FL    +++  +++                         + +
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 123 LLLANNSLF-GSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG 181
           + +  N+L        +   + L  L+   N   G +P   G+    L  LNL+ N    
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITE 367

Query: 182 SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG-------HIFS 234
              +     + +E L  + N+L        A     +  +  S N +          +  
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 235 KKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG-------EIPRWLGNL 287
             F   N+  + L  N+      E  S    L  + L  N L+        +      N 
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 288 SALEGIRMPNNNLEG-PIPIEFCQLSALKILDLSNNSI------FGTLPSCFSPAHIEQV 340
             L  I +  N L           L  L  +DLS NS            +        Q 
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547

Query: 341 HLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 400
               N+        I   P L  L +  N +   +  +I   P ++ L +  N       
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDL 604

Query: 401 VQLCQLKEVRLIDLSHNNLSGHIPSCL 427
             +C   E  +  L ++     I  C 
Sbjct: 605 SYVCPYIEAGMYMLFYDKTQ-DIRGCD 630

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  188 bits (479), Expect = 2e-51
 Identities = 62/442 (14%), Positives = 141/442 (31%), Gaps = 39/442 (8%)

Query: 17  HLISMEKLILSNNHFFQIPISLEP--LFNLSKLKTFDGEICAETESHYNSLTPK--FQLT 72
            L  +E L L ++          P  +      +          ++  +    +    L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 73  SISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFG 132
              ++      +  K                N++      ++   T L    + N+    
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVA 220

Query: 133 SFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 192
                   ++N           +    ++    L  L D+ +        +P+    +  
Sbjct: 221 ENICEAWENENS-----EYAQQYKTEDLKWD-NLKDLTDVEVYNCPNLTKLPTFLKALPE 274

Query: 193 LERLDISDNQLTGEIPER-------MATGCFSLKILALSNNSLQ-GHIFSKKFNLTNLMR 244
           ++ ++++ N+       +        A     ++I+ +  N+L+   + +    +  L  
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 245 LQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG-P 303
           L+   N+  G++P        L  L L+ N ++     + G    +E +   +N L+  P
Sbjct: 335 LECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393

Query: 304 IPIEFCQLSALKILDLSNNSIFGTLPSCFSP--------AHIEQVHLSKNKIEGRLESII 355
              +   +S +  +D S N I       F P         ++  ++LS N+I    + + 
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 356 HDSPYLVTLDLSYNRLHG-------SIPNRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLK 407
                L +++L  N L                    L  + L  N +       +   L 
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513

Query: 408 EVRLIDLSHNNLSGHIPSCLVN 429
            +  IDLS+N+ S   P+  +N
Sbjct: 514 YLVGIDLSYNSFSK-FPTQPLN 534

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  137 bits (347), Expect = 4e-34
 Identities = 57/352 (16%), Positives = 117/352 (33%), Gaps = 49/352 (13%)

Query: 4   TINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYN 63
            +     +L        ++ + +  N+    P+    L  + KL   +          YN
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLE--------CLYN 340

Query: 64  SLT---PKF----QLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNW 112
            L    P F    +L S++L+      I       F      ++N   +H  L      +
Sbjct: 341 QLEGKLPAFGSEIKLASLNLAYNQITEIP----ANFCGFTEQVENLSFAHNKLKYIPNIF 396

Query: 113 LLENNTNLVMLLLANNSL-------FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY 165
             ++ + +  +  + N +       F           N++++++SNN        E+ + 
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFST 455

Query: 166 LPGLMDLNLSRNAFNG-------SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSL 218
              L  +NL  N               +F +  +L  +D+  N+LT    +  AT    L
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 219 KILALSNNSLQGHIFSKKFNLTNLMRLQL------DGNKFIGEIPESLSKCYLLGGLYLS 272
             + LS NS      ++  N + L    +       GN+ + E PE ++ C  L  L + 
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
            N +   +   +     +  + + +N          C      +  L  +  
Sbjct: 575 SNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 1e-19
 Identities = 30/244 (12%), Positives = 65/244 (26%), Gaps = 30/244 (12%)

Query: 355 IHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKG----EIPVQLCQLKEVR 410
           ++ +  +  L L      G +P+ I +L +L  L L  +  K       P  +       
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 411 LIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEE 470
                  +              S    + +                  P + +       
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCI---------------NSDPQQKSIKKSSRI 181

Query: 471 TVQFTTKNMSYYYQGRI------LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNN 524
           T++ T           +      LT +    +  +    E   +          N  +  
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQ 236

Query: 525 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 584
              T    + NLK +  +++       K+P  L  L  +++  VA N        +  + 
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 585 TFEE 588
              +
Sbjct: 297 ALAD 300

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 10/98 (10%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGI------HALNLSHNNLTGTIPTTFSNLKQIES 541
           L  + GIDLS N  +   PTQ    S +      +  +   N      P   +    +  
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 542 LDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
           L +  N +   +  ++     + V  +  N        
Sbjct: 571 LQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 488 LTSMSGIDLSCNKLTG-------EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE 540
           ++ MS ID S N++          +         + ++NLS+N ++      FS    + 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 541 SLDLSYNLLHG-------KIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTF 586
           S++L  N+L                    L    + +N L+  + D  + +T 
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 486 RILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 545
           +     +  D   N+   E P  I     +  L +  N++         N+     LD+ 
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIK 595

Query: 546 YNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574
            N         +       ++ + Y+   
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 7/124 (5%)

Query: 495 DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG--- 551
           +   +    +    +     +  L+L     +G +P     L ++E L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 552 -KIPPQLIVLNTLEVFKVAYNNLSGKIPD---RAQFSTFEEDSYEGNPFLCGKPLSKSCN 607
              P  +    + E  +    +      D   R  FS   +D    +P       S    
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 608 HNGL 611
               
Sbjct: 183 LKDT 186

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  203 bits (518), Expect = 5e-60
 Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 33/301 (10%)

Query: 97  NADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMP--IHSHQNLATLDVSN-NF 153
             D  +    G   +        +  L L+  +L   + +P  + +   L  L +   N 
Sbjct: 30  TTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
             G IP  I   L  L  L ++    +G+IP   + +K L  LD S N L+G +P  +++
Sbjct: 89  LVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 214 GCFSLKILALSNNSLQGHIFSKKFNLTNLMR-LQLDGNKFIGEIPESLSKCYLLGGLYLS 272
              +L  +    N + G I     + + L   + +  N+  G+IP + +   L   + LS
Sbjct: 148 -LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLS 205

Query: 273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF 332
            N L G+     G+    + I +  N+L   +  +      L  LDL NN I+GTLP   
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 333 SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAH 392
           +                          +L +L++S+N L G IP     L + +    A+
Sbjct: 265 T-----------------------QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300

Query: 393 N 393
           N
Sbjct: 301 N 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (476), Expect = 5e-54
 Identities = 71/288 (24%), Positives = 106/288 (36%), Gaps = 55/288 (19%)

Query: 146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS--IPSSFADMKMLERLDISD-NQ 202
           T D  N  + G +          + +L+LS         IPSS A++  L  L I   N 
Sbjct: 30  TTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 203 LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSK 262
           L G IP  +A                          LT L  L +      G IP+ LS+
Sbjct: 89  LVGPIPPAIA-------------------------KLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSAL-KILDLSN 321
              L  L  S N LSG +P  + +L  L GI    N + G IP  +   S L   + +S 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 322 NSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDR 381
           N + G +P  F+       +L+                 L  +DLS N L G        
Sbjct: 184 NRLTGKIPPTFA-------NLN-----------------LAFVDLSRNMLEGDASVLFGS 219

Query: 382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
                 + LA N +  ++  ++   K +  +DL +N + G +P  L  
Sbjct: 220 DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  184 bits (469), Expect = 5e-53
 Identities = 67/383 (17%), Positives = 118/383 (30%), Gaps = 114/383 (29%)

Query: 255 EIPESLSKCYLL----GGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG--PIPIEF 308
           +I + L     L          +    G +         +  + +   NL    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 309 CQLSALKILDLSN-NSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLS 367
             L  L  L +   N++ G +P                    +L         L  L ++
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAI----------------AKL-------TQLHYLYIT 109

Query: 368 YNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
           +  + G+IP+ + ++  L  L  ++N + G +P  +  L  +  I    N +SG I    
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI---- 165

Query: 428 VNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI 487
                         P S                                        G  
Sbjct: 166 --------------PDSY---------------------------------------GSF 172

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
               + + +S N+LTG+IP     L+ +  ++LS N L G     F + K  + + L+ N
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSG------------------------KIPDRAQF 583
            L   +  ++ +   L    +  N + G                        +IP     
Sbjct: 232 SLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 584 STFEEDSYEGNPFLCGKPLSKSC 606
             F+  +Y  N  LCG PL  +C
Sbjct: 291 QRFDVSAYANNKCLCGSPL-PAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  182 bits (464), Expect = 2e-52
 Identities = 77/340 (22%), Positives = 127/340 (37%), Gaps = 68/340 (20%)

Query: 223 LSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGE--IPESLSKCYLLGGLYLSD-NHLSGE 279
             N +  G +         +  L L G        IP SL+    L  LY+   N+L G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 280 IPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQ 339
           IP  +  L+ L  + + + N+ G IP    Q+  L  LD S N++ GTLP   S      
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS------ 146

Query: 340 VHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQL-NYLLLAHNYIKGE 398
             L                  LV +    NR+ G+IP+      +L   + ++ N + G+
Sbjct: 147 -SLPN----------------LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 399 IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN-TALSGGHHEAVAPTSIWCGRASVYISAC 457
           IP     L  +  +DLS N L G       +                       ++++  
Sbjct: 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ-----------------KIHLAKN 231

Query: 458 LPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHA 517
             +     +G                      +++G+DL  N++ G +P  +  L  +H+
Sbjct: 232 SLAFDLGKVGL-------------------SKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 518 LNLSHNNLTGTIPTTFSNLKQIESLDLSYN--LLHGKIPP 555
           LN+S NNL G IP    NL++ +    + N  L    +P 
Sbjct: 273 LNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  170 bits (432), Expect = 9e-48
 Identities = 77/322 (23%), Positives = 117/322 (36%), Gaps = 58/322 (18%)

Query: 14  SLMHLISMEKLILSNNHFF-QIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLT 72
           +      +  L LS  +     PI    L NL  L               N+L       
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLY-------IGGINNLV------ 90

Query: 73  SISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFG 132
                     G  P  +     L    ++H N+SG  P++L    + +            
Sbjct: 91  ----------GPIPPAIAKLTQLHYLYITHTNVSGAIPDFL----SQI------------ 124

Query: 133 SFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKM 192
                    + L TLD S N   G +P  I   LP L+ +    N  +G+IP S+     
Sbjct: 125 ---------KTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 193 LER-LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNK 251
           L   + IS N+LTG+IP        +L  + LS N L+G       +  N  ++ L  N 
Sbjct: 175 LFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232

Query: 252 FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQL 311
              ++   +     L GL L +N + G +P+ L  L  L  + +  NNL G IP     L
Sbjct: 233 LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NL 290

Query: 312 SALKILDLSNNSIF--GTLPSC 331
               +   +NN       LP+C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  207 bits (527), Expect = 7e-57
 Identities = 84/562 (14%), Positives = 187/562 (33%), Gaps = 72/562 (12%)

Query: 49  TFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQ 108
            F+ E+    +     L    ++T +SL+G+   G  P  +    +LK       + +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 109 FPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGH-----IPVEIG 163
              +  E  T  +     +       +M +   Q L   D+  +  + +     I  +  
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 164 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILAL 223
             L     +    N     I  +   +  L+ +  +++  T +            +    
Sbjct: 423 ISLKDT-QIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANS 474

Query: 224 SNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG----- 278
                  +      NL +L  ++L     + ++P+ L     L  L ++ N         
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 279 ----EIPRWLGNLSALEGIRMPNNNLEG-PIPIEFCQLSALKILDLSNNSIFGTLPSCFS 333
                +         ++   M  NNLE  P      ++  L +LD  +N +   L +  +
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEAFGT 593

Query: 334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNR--IDRLPQLNYLLLA 391
              +  + L  N+IE   E     +  +  L  S+N+L   IPN      +  +  +  +
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652

Query: 392 HNYIKGEIPVQLCQLKEVRL-----IDLSHNNLSGHIPSCLVN-TALSGGHHEAVAPTSI 445
           +N I  E     C + + +      + LS+N +           + +S            
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS------------ 700

Query: 446 WCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI 505
                ++ +S  L +       K +   +                ++ IDL  NKLT  +
Sbjct: 701 -----TIILSNNLMTSIPENSLKPKDGNYKN-----------TYLLTTIDLRFNKLT-SL 743

Query: 506 PTQI--GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL------LHGKIPPQL 557
                   L  +  +++S+N  + + PT   N  Q+++  + +        +  + P  +
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 558 IVLNTLEVFKVAYNNLSGKIPD 579
               +L   ++  N++  K+ +
Sbjct: 803 TTCPSLIQLQIGSNDIR-KVDE 823

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  189 bits (482), Expect = 6e-51
 Identities = 83/599 (13%), Positives = 179/599 (29%), Gaps = 88/599 (14%)

Query: 13  ISLMHLISMEKLILSNNHF-FQIPISLEPLFNLSKLKTFD-------GEICAETESHYNS 64
           + L +   +  L L+      ++P ++     L++LK                 +     
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAI---GQLTELKVLSFGTHSETVSGRLFGDEELTP 373

Query: 65  LTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLL 124
              + +   I +        + + L     L++  ++              +  +  +  
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD-AINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 125 LANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIP 184
           L N          I     L  +  +N+ F                D N        +  
Sbjct: 433 LTNR--ITFISKAIQRLTKLQIIYFANSPFTYDNIAV------DWEDANSDYAKQYENEE 484

Query: 185 SSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG---------HIFSK 235
            S++++K L  +++ +     ++P+ +      L+ L ++ N              +   
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 236 KFNLTNLMRLQLDGNKFIGEIPES--LSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGI 293
           +     +    +  N  + E P S  L K   LG L    N +   +    G    L  +
Sbjct: 544 EDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDL 600

Query: 294 RMPNNNLEGPIPIEFCQ-LSALKILDLSNNSIFGTLPSCFSPA---HIEQVHLSKNKIEG 349
           ++  N +E  IP +FC     ++ L  S+N +   +P+ F+      +  V  S NKI  
Sbjct: 601 KLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 350 RLESIIHDSPY-----LVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK-------G 397
              +I             T+ LSYN +             ++ ++L++N +         
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 398 EIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAC 457
                      +  IDL  N L+  +      T L            +     ++ +S  
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL----------PYLS----NMDVSYN 763

Query: 458 LPSRSAPPMGKEETVQFTT--KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGI 515
                           F++         Q +        D   N++  + PT I     +
Sbjct: 764 ---------------CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 516 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574
             L +  N++          L     LD++ N         +       ++ + Y+   
Sbjct: 809 IQLQIGSNDIRKVDEKLTPQL---YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  189 bits (481), Expect = 8e-51
 Identities = 79/585 (13%), Positives = 164/585 (28%), Gaps = 85/585 (14%)

Query: 2   SLTINLLKTSL-ISLMHLISMEKLILSNNHFFQIP-----ISLEPLFNLSKLKTFDGEIC 55
           SL     K  +  ++  L  ++ L    +             L P  +  +         
Sbjct: 329 SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

Query: 56  AETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLE 115
                +   L     L   +++   +     K                 ++       ++
Sbjct: 389 KMFLDYDQRLN-LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA--IQ 445

Query: 116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS 175
             T L ++  AN+          +   +    +      + +  +     L  L D+ L 
Sbjct: 446 RLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELSWSN-LKDLTDVELY 499

Query: 176 RNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMA--------TGCFSLKILALSNNS 227
                  +P    D+  L+ L+I+ N+       +               ++I  +  N+
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 228 LQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG- 285
           L+    S     +  L  L    NK      E+      L  L L  N +  EIP     
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCA 616

Query: 286 NLSALEGIRMPNNNLEG-PIPIEFCQLSALKILDLSNNSIFGTLPSCFSP------AHIE 338
               +EG+   +N L+  P       +  +  +D S N I     +           +  
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 339 QVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRL-------HGSIPNRIDRLPQLNYLLLA 391
            V LS N+I+     +      + T+ LS N +                    L  + L 
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 392 HNYIKGEIP--VQLCQLKEVRLIDLSHNNLSGHIPSCLVN----TALSGGHHEAVAPTSI 445
            N +   +    +   L  +  +D+S+N  S   P+  +N     A    H         
Sbjct: 737 FNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDA----- 789

Query: 446 WCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI 505
                   I    P+     +                       S+  + +  N +  ++
Sbjct: 790 ----EGNRILRQWPTG----ITT-------------------CPSLIQLQIGSNDIR-KV 821

Query: 506 PTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550
             ++     ++ L+++ N       T+     +     L Y+   
Sbjct: 822 DEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  175 bits (446), Expect = 2e-46
 Identities = 78/451 (17%), Positives = 142/451 (31%), Gaps = 46/451 (10%)

Query: 6   NLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSL 65
           N +     ++  L  ++ +  +N+ F    I+++     S             E  +++L
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSWSNL 490

Query: 66  TPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWL--------LENN 117
                LT + L    +    P FLY   +L++ +++                     +  
Sbjct: 491 K---DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 118 TNLVMLLLANNSLFG-SFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSR 176
             + +  +  N+L        +     L  LD  +N    H+    GT    L DL L  
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLTDLKLDY 604

Query: 177 NAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMA-TGCFSLKILALSNNSLQGH---- 231
           N          A    +E L  S N+L   IP        + +  +  S N +       
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 232 -IFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS-------GEIPRW 283
                 +   N   + L  N+      E  +    +  + LS+N ++             
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 284 LGNLSALEGIRMPNNNLEG-PIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-------A 335
             N   L  I +  N L           L  L  +D+S N  F + P+            
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFG 782

Query: 336 HIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYI 395
              Q     N+I  +  + I   P L+ L +  N +   +  ++   PQL  L +A N  
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPN 839

Query: 396 KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSC 426
                  +C   E  +  L ++     I  C
Sbjct: 840 ISIDVTSVCPYIEAGMYVLLYDKTQ-DIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  140 bits (354), Expect = 1e-34
 Identities = 49/441 (11%), Positives = 114/441 (25%), Gaps = 104/441 (23%)

Query: 146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG 205
             +   + +     V++      +  L+L+     G +P +   +  L+ L    +  T 
Sbjct: 303 NFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 206 EIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYL 265
                      +  +     + ++ H                   K   +  + L+   L
Sbjct: 362 -SGRLFGDEELTPDMSEERKHRIRMHY-----------------KKMFLDYDQRLNLSDL 403

Query: 266 LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325
           L      +  +         +L   + I    N +   I     +L+ L+I+  +N+   
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITF-ISKAIQRLTKLQIIYFANSPF- 460

Query: 326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQL 385
                                      +  + +      +  Y + + +       L  L
Sbjct: 461 ---------------------------TYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 386 NYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSI 445
             + L +     ++P  L  L E++ ++++ N            T L             
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL---------ADDE 544

Query: 446 WCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-E 504
                                                        +    +  N L    
Sbjct: 545 DT----------------------------------------GPKIQIFYMGYNNLEEFP 564

Query: 505 IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL-IVLNTL 563
               +  +  +  L+  HN +   +   F    ++  L L YN +   IP       + +
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQV 621

Query: 564 EVFKVAYNNLSGKIPDRAQFS 584
           E    ++N L   IP+     
Sbjct: 622 EGLGFSHNKLKY-IPNIFNAK 641

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  121 bits (305), Expect = 1e-28
 Identities = 49/403 (12%), Positives = 110/403 (27%), Gaps = 66/403 (16%)

Query: 196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGE 255
           + I   +    I +  A      + L   N        +   +  N      + + +  +
Sbjct: 257 VPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWGDQ 314

Query: 256 IPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALK 315
               L     + GL L+     G +P  +G L+ L+ +    ++      +   +     
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 316 ILDLSNNSIFGTLPSCF--SPAHIEQVHLSKNKIE-----GRLESIIHDSPYLVTLDLSY 368
           + +   + I       F      +    L ++ I        ++     S     +    
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 369 NRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLV 428
           NR+   I   I RL +L  +  A++    +              +  +     +      
Sbjct: 435 NRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDW-----EDANSDYAKQYENEELSWS 488

Query: 429 N-TALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPP-MGKEETVQFTTKNMSYYYQGR 486
           N   L+                  V +  C      P  +                    
Sbjct: 489 NLKDLT-----------------DVELYNCPNMTQLPDFLYD------------------ 513

Query: 487 ILTSMSGIDLSCNKLTG---------EIPTQIGYLSGIHALNLSHNNLTG-TIPTTFSNL 536
            L  +  ++++CN+             +         I    + +NNL       +   +
Sbjct: 514 -LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 537 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
            ++  LD  +N +  +          L   K+ YN +   IP+
Sbjct: 573 VKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.6 bits (243), Expect = 4e-21
 Identities = 39/329 (11%), Positives = 89/329 (27%), Gaps = 29/329 (8%)

Query: 298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHD 357
                 I       +  + LD  N   +    +    +     +   +    +    + +
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN 321

Query: 358 SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 417
           +  +  L L+     G +P+ I +L +L  L    +       +   +     + +   +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 418 NLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTK 477
            +  H     ++               +             P           +++ T  
Sbjct: 382 RIRMHYKKMFLDY-----------DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

Query: 478 NMSYYYQGRI------LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT 531
                    I      LT +  I  + +  T +              N  +         
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEEL 485

Query: 532 TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSY 591
           ++SNLK +  ++L       ++P  L  L  L+   +A N        +A ++   +D  
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD-- 543

Query: 592 EGNPFLCGKPLSK-SCNHNGLTTVTPEAS 619
                  G  +      +N L      AS
Sbjct: 544 ----EDTGPKIQIFYMGYNNLEEFPASAS 568

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 8e-12
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSH------NNLTGTIPTTFSNLKQIES 541
           L  +S +D+S N  +   PTQ    S + A  + H      N +    PT  +    +  
Sbjct: 752 LPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 542 LDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL-SGKIPDRAQFSTFEEDS--YEGNPFLC 598
           L +  N +  K+  +L     L +  +A N   S  +     +         Y+    + 
Sbjct: 811 LQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

Query: 599 G 599
           G
Sbjct: 868 G 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 7e-10
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 488 LTSMSGIDLSCNKLTG---EIPTQIGYLSGIH--ALNLSHNNLTGTIPTTFSNLKQIESL 542
           +  M  +D S NK+      I   +    GI+   + LS+N +       F+    I ++
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 543 DLSYNLL-------HGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFE 587
            LS NL+                    L    + +N L+  + D  + +T  
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLP 753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 485 GRILTSMSGIDLSCNKLTGEIP--TQIGYLSGIHALNLSHNNLTGTIPTTFS-----NLK 537
                 + G+  S NKL   IP       +  + +++ S+N +                 
Sbjct: 615 CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 538 QIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 581
              ++ LSYN +           + +    ++ N ++  IP+ +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (489), Expect = 4e-53
 Identities = 86/532 (16%), Positives = 160/532 (30%), Gaps = 94/532 (17%)

Query: 94  DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF 153
             KN DLS   L     ++   +   L +L L+   +         S  +L+TL ++ N 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
                       L  L  L                 +K L+ L+++ N +         +
Sbjct: 88  IQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 214 GCFSLKILALSNNSLQGHIFSKKFNLTNL----MRLQLDGNKFIGEIPESLSKCYLLGGL 269
              +L+ L LS+N +Q    +    L  +    + L L  N      P +  +  L   L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH-KL 205

Query: 270 YLSDNHLSGEIPR-WLGNLSALEGIRMPNNNLEGPIPIE--------------------- 307
            L +N  S  + +  +  L+ LE  R+          +E                     
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 308 ------------FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESII 355
                       F  L+ +    L + +I       ++    + + L   K         
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-WQHLELVNCKFGQ-----F 319

Query: 356 HDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYI--KGEIPVQLCQLKEVRLID 413
                     L++    G        LP L +L L+ N +  KG           ++ +D
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 414 LSHNNLSGHIPSCLVNTAL-----SGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGK 468
           LS N +     + L    L        + + ++  S++                      
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-------------------- 419

Query: 469 EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGT 528
                              L ++  +D+S              LS +  L ++ N+    
Sbjct: 420 -------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 529 I-PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
             P  F+ L+ +  LDLS   L    P     L++L+V  +++NN       
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (478), Expect = 1e-51
 Identities = 97/594 (16%), Positives = 172/594 (28%), Gaps = 97/594 (16%)

Query: 20  SMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79
           S + L LS N    +       F+  +L+  D             +              
Sbjct: 29  STKNLDLSFNPLRHLGSY--SFFSFPELQVLDL--------SRCEIQ------------- 65

Query: 80  IDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIH 139
                          L    L+   +            ++L  L+    +L      PI 
Sbjct: 66  ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIG 121

Query: 140 SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE----R 195
             + L  L+V++N        E  + L  L  L+LS N       +    +  +      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIG 254
           LD+S N +    P   A     L  L L NN    ++       L  L   +L   +F  
Sbjct: 182 LDLSLNPMNFIQPG--AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 255 EI---PESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQL 311
           E        S    L  L + +  L+                    +     I   F  L
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAY------------------LDYYLDDIIDLFNCL 281

Query: 312 SALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRL 371
           + +    L + +I       ++    + + L   K                   L++   
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFG-WQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSN 335

Query: 372 HGSIPNRIDRLPQLNYLLLAHNYI--KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
            G        LP L +L L+ N +  KG           ++ +DLS N +     + L  
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 430 TA-----LSGGHHEAVAPTSIWCGRASVYISACLPS-----------RSAPPMGKEETVQ 473
                      + + ++  S++           L +           R A          
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLS---------LRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 474 FTTKNMSY-YYQGRI-------LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNL 525
                M+   +Q          L +++ +DLS  +L    PT    LS +  LN+SHNN 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 526 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL-IVLNTLEVFKVAYNNLSGKIP 578
                  +  L  ++ LD S N +      +L    ++L    +  N+ +    
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (478), Expect = 2e-51
 Identities = 83/505 (16%), Positives = 145/505 (28%), Gaps = 51/505 (10%)

Query: 98  ADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGH 157
                LN   + P+ L     +   L L+ N L         S   L  LD+S       
Sbjct: 12  YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 158 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFS 217
                 + L  L  L L+ N        +F+ +  L++L   +  L       +     +
Sbjct: 68  EDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKT 125

Query: 218 LKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPESLSKC----YLLGGLYLS 272
           LK L +++N +Q     + F NLTNL  L L  NK        L        L   L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ-LSALKILDLSNNSIFGTLPSC 331
            N ++   P     +  L  + + NN     +     Q L+ L++  L            
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 332 FSPA---------HIEQVHLSKNKI-EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDR 381
                         IE+  L+        +  + +    + +  L    +          
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSY 302

Query: 382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP-SCLVNTALSGGHHEAV 440
                +L L +        ++L  LK +        N    +    L    LS       
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 441 APTSIWCGRAS----VYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDL 496
              S      +    + +S       +                        L  +  +D 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-------------------LEQLEHLDF 403

Query: 497 SCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP 555
             + L       +   L  +  L++SH +        F+ L  +E L ++ N       P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 556 QLIV-LNTLEVFKVAYNNLSGKIPD 579
            +   L  L    ++   L    P 
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  184 bits (468), Expect = 3e-50
 Identities = 78/460 (16%), Positives = 147/460 (31%), Gaps = 50/460 (10%)

Query: 142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN 201
            N+    +  NF+   IP  +        +L+LS N        SF     L+ LD+S  
Sbjct: 8   PNITYQCMELNFYK--IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 202 QLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLS 261
           ++              L  L L+ N +Q         L++L +L              + 
Sbjct: 63  EIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 262 KCYLLGGLYLSDNHL-SGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKI---- 316
               L  L ++ N + S ++P +  NL+ LE + + +N ++     +   L  + +    
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 317 LDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL-ESIIHDSPYLVTLDLSYNRLHGS- 374
           LDLS N +    P  F    + ++ L  N     + ++ I     L    L         
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 375 -----IPNRIDRLPQLNYLLLAHNYIK---GEIPVQLCQLKEVRLIDLSHNNLSGHIP-- 424
                  + ++ L  L        Y+     +I      L  V    L    +       
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 425 --SCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYY 482
                 +  L         PT        +  ++     +   +                
Sbjct: 302 YNFGWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGGNAFSEVD--------------- 345

Query: 483 YQGRILTSMSGIDLSCNKLT--GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE 540
                L S+  +DLS N L+  G         + +  L+LS N +  T+ + F  L+Q+E
Sbjct: 346 -----LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 541 SLDLSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPD 579
            LD  ++ L       + + L  L    +++ +       
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  176 bits (448), Expect = 2e-47
 Identities = 88/438 (20%), Positives = 142/438 (32%), Gaps = 33/438 (7%)

Query: 2   SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESH 61
            L++N +          I + KL L NN F  + +    +  L+ L+             
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNN-FDSLNVMKTCIQGLAGLEVHR--------LV 233

Query: 62  YNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLV 121
                 +  L     S                 ++   L++L+        L    TN+ 
Sbjct: 234 LGEFRNEGNLEKFDKS------ALEGL--CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 122 MLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG 181
              L + ++          +     L++ N  F           L  L  L  + N   G
Sbjct: 286 SFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSN--KG 337

Query: 182 SIPSSFADMKMLERLDISDNQLTG-EIPERMATGCFSLKILALSNNSLQGHIFSKKFNLT 240
               S  D+  LE LD+S N L+      +   G  SLK L LS N +   + S    L 
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLE 396

Query: 241 NLMRLQLDGNKFIGEIPES-LSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNN 299
            L  L    +        S       L  L +S  H           LS+LE ++M  N+
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 300 LEGPI-PIEFCQLSALKILDLSNNSIFGTLPSCFSPAH-IEQVHLSKNKIEGRLESIIHD 357
            +    P  F +L  L  LDLS   +    P+ F+    ++ +++S N            
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 358 SPYLVTLDLSYNRLHGSIPNRIDRLP-QLNYLLLAHNYIKGEIPVQ--LCQLKEVRLIDL 414
              L  LD S N +  S    +   P  L +L L  N        Q  L  +K+ R + +
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 415 SHNNLSGHIPSCLVNTAL 432
               +    PS      +
Sbjct: 577 EVERMECATPSDKQGMPV 594

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  160 bits (406), Expect = 7e-42
 Identities = 77/420 (18%), Positives = 144/420 (34%), Gaps = 65/420 (15%)

Query: 2   SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLF-NLSKLKTFDGEICAETES 60
               NL K    +L  L ++        +       +  LF  L+ + +F          
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS--------- 288

Query: 61  HYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNL 120
                     L S+++    D         +    ++ +L +     QFP   L++   L
Sbjct: 289 ----------LVSVTIERVKDFS-------YNFGWQHLELVNCKFG-QFPTLKLKSLKRL 330

Query: 121 VMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF--FHGHIPVEIGTYLPGLMDLNLSRNA 178
                   + F    +P     +L  LD+S N   F G            L  L+LS N 
Sbjct: 331 TFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNG 384

Query: 179 FNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN 238
               + S+F  ++ LE LD   + L       +     +L  L +S+   +         
Sbjct: 385 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 239 LTNLMRLQLDGNKFIGEI-PESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297
           L++L  L++ GN F     P+  ++   L  L LS   L    P    +LS+L+ + M +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHD 357
           NN        +  L++L++LD S N I  +             H   +            
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-------HFPSS------------ 544

Query: 358 SPYLVTLDLSYNRLHGSIPNR--IDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLS 415
              L  L+L+ N    +  ++  +  +     LL+    ++   P      + + ++ L+
Sbjct: 545 ---LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS---DKQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.2 bits (245), Expect = 2e-21
 Identities = 49/275 (17%), Positives = 83/275 (30%), Gaps = 48/275 (17%)

Query: 309 CQLSALKILDLSNN--SIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDL 366
             +  +    +  N   I   LP        + + LS N +           P L  LDL
Sbjct: 5   EVVPNITYQCMELNFYKIPDNLPF-----STKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 367 SYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSC 426
           S   +          L  L+ L+L  N I+         L  ++ +     NL+      
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 427 LVN-TALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQG 485
           + +   L                   + ++  L      P        F+          
Sbjct: 120 IGHLKTLK-----------------ELNVAHNLIQSFKLPE------YFSN--------- 147

Query: 486 RILTSMSGIDLSCNKLTGEIPTQIGYLSGIHA----LNLSHNNLTGTIPTTFSNLKQIES 541
             LT++  +DLS NK+     T +  L  +      L+LS N +    P  F  ++ +  
Sbjct: 148 --LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 204

Query: 542 LDLSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLSG 575
           L L  N     +    I  L  LEV ++       
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  188 bits (480), Expect = 8e-52
 Identities = 93/585 (15%), Positives = 189/585 (32%), Gaps = 89/585 (15%)

Query: 20  SMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSG- 78
           S + + LS N    +        N S+L+  D   C        +      L+++ L+G 
Sbjct: 33  STKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 79  ---YIDGGTFPKFLYHQHDLKNADLSHLNLSG----QFPNWLLENNTNLVMLLLANNSLF 131
                  G+F         L +  L +L           ++ +     L  L +A+N + 
Sbjct: 91  PIQSFSPGSF-------SGLTS--LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 132 GSFRMPIHSH-QNLATLDVSNNFFHGHIPVEIGTYLPGL----MDLNLSRNAFNGSIPSS 186
                   S+  NL  +D+S N+    I V    +L       + L++S N  +     +
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

Query: 187 FADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF------NLT 240
           F  +K L  L +  N  +  I +        L +  L     +     + F       L 
Sbjct: 201 FQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259

Query: 241 NLMRLQLD--GNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNN 298
           ++   +          +          +  + L+   +   +   +      + + +   
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED-VPKHFKWQSLSIIRC 317

Query: 299 NLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHD- 357
            L+         L  LK L L+ N    +      P  +  + LS+N +         D 
Sbjct: 318 QLKQ---FPTLDLPFLKSLTLTMNKGSISFKKVALP-SLSYLDLSRNALSFSGCCSYSDL 373

Query: 358 -SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ-LCQLKEVRLIDLS 415
            +  L  LDLS+N     +      L +L +L   H+ +K          L+++  +D+S
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 416 HNNLSGHIPSCLVNTA------LSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKE 469
           + N         +         ++G   +    ++++                       
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------------------- 471

Query: 470 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI 529
                              T+++ +DLS  +L          L  +  LN+SHNNL    
Sbjct: 472 ------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 530 PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574
            + ++ L  + +LD S+N +            +L  F +  N+++
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (420), Expect = 1e-43
 Identities = 81/504 (16%), Positives = 143/504 (28%), Gaps = 71/504 (14%)

Query: 98  ADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGH 157
                  LS + P+ +    ++   + L+ N L         +   L  LD+S       
Sbjct: 16  YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 158 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFS 217
                   L  L +L L+ N      P SF+ +  LE L   + +L   +         +
Sbjct: 72  EDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLIT 129

Query: 218 LKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPESLS----KCYLLGGLYLS 272
           LK L +++N +        F NLTNL+ + L  N         L        +   L +S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ-LSALKILDLSNNSIFGTLPSC 331
            N +     +    +  L  + +  N     I     Q L+ L +  L            
Sbjct: 190 LNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 332 FSPAHI---------EQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRL 382
                I         ++  L+            H    +  + L+   +       + + 
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKH 306

Query: 383 PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP----SCLVNTALSGGHHE 438
            +   L +    +K    + L  LK    + L+ N  S          L    LS     
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLKS---LTLTMNKGSISFKKVALPSLSYLDLSRNALS 363

Query: 439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSC 498
                S                                             S+  +DLS 
Sbjct: 364 FSGCCSYSDLG--------------------------------------TNSLRHLDLSF 385

Query: 499 NKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGKIPPQL 557
           N     +      L  +  L+  H+ L        F +L+++  LD+SY           
Sbjct: 386 NGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 558 IVLNTLEVFKVAYNNLSGKIPDRA 581
           + L +L   K+A N+         
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  163 bits (415), Expect = 5e-43
 Identities = 84/531 (15%), Positives = 168/531 (31%), Gaps = 96/531 (18%)

Query: 98  ADLSHLNLSG----QFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF 153
           +   +++LS        ++   N + L  L L+   +        H   +L+ L ++ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
                     + L  L +L                 +  L++L+++ N +         +
Sbjct: 92  IQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 214 GCFSLKILALSNNSLQG---------------------------HIFSKKFNLTNLMRLQ 246
              +L  + LS N +Q                             I  + F    L  L 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 247 LDGNKFIGEIPE-------SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSAL--EGIRMPN 297
           L GN     I +        L    L+ G +  + +L    P  +  L  +  +  R+  
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHD 357
            N      ++F  L+ +  + L+  SI   L         + + + + +++   +    D
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLK---QFPTLD 326

Query: 358 SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK--GEIPVQLCQLKEVRLIDLS 415
            P+L +L L+ N+   SI  +   LP L+YL L+ N +   G           +R +DLS
Sbjct: 327 LPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 416 HNNLSGHIPSCLVNTA------LSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKE 469
            N     + +  +               + V   S +                       
Sbjct: 385 FNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS--------------------- 422

Query: 470 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI 529
                             L  +  +D+S      +       L+ ++ L ++ N+     
Sbjct: 423 ------------------LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

Query: 530 PT-TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
            +  F+N   +  LDLS   L          L+ L++  +++NNL      
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  161 bits (410), Expect = 2e-42
 Identities = 90/530 (16%), Positives = 174/530 (32%), Gaps = 59/530 (11%)

Query: 100 LSHLNLSGQFPNWL----LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFH 155
           L  L+LS      +         +L  L+L  N +            +L  L        
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 156 GHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQLTGEIPE---RM 211
             +       L  L  LN++ N  +   +P+ F+++  L  +D+S N +          +
Sbjct: 118 S-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 212 ATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE-------SLSKCY 264
                    L +S N +   I  + F    L  L L GN     I +        L    
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 265 LLGGLYLSDNHLSGEIPRWLGNLSAL--EGIRMPNNNLEGPIPIEFCQLSALKILDLSNN 322
           L+ G +  + +L    P  +  L  +  +  R+   N      ++F  L+ +  + L+  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 323 SIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRL 382
           SI   L         + + + + +++   +    D P+L +L L+ N+   SI  +   L
Sbjct: 296 SIK-YLEDVPKHFKWQSLSIIRCQLK---QFPTLDLPFLKSLTLTMNKG--SISFKKVAL 349

Query: 383 PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLS-HNNLSGHIPSCLVNTA------LSGG 435
           P L+YL L+ N +          L    L  L    N +  + +  +             
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409

Query: 436 HHEAVAPTSIWCGRAS---VYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI--LTS 490
             + V   S +        + IS                      N    + G    LTS
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYT--------------------NTKIDFDGIFLGLTS 449

Query: 491 MSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 549
           ++ + ++ N       + +    + +  L+LS   L       F  L +++ L++S+N L
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 550 HGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLC 598
                     L +L     ++N +       +    +    +   N   C
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  160 bits (408), Expect = 4e-42
 Identities = 70/428 (16%), Positives = 145/428 (33%), Gaps = 38/428 (8%)

Query: 14  SLMHLISMEKLILSNNHFFQIPI-SLEPLFNLSKLKTFDGEICAETESHYNSLT------ 66
              +L ++  + LS N+   I +  L+ L    ++           +   N +       
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL-------SLDMSLNPIDFIQDQA 200

Query: 67  -PKFQLTSISLSGYIDGGTFPKFLY------HQHDLKNADLSHLNLSGQFPNWLLENNTN 119
               +L  ++L G  +     K         H H L   +         F   ++E   +
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 120 LVM--LLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN 177
           + +    L   + F    +  H   N++ + ++         +E          L++ R 
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRC 317

Query: 178 AFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ--GHIFSK 235
                      D+  L+ L ++ N+ +    +       SL  L LS N+L   G     
Sbjct: 318 QLKQF---PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYS 371

Query: 236 KFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRW-LGNLSALEGIR 294
                +L  L L  N     +  +      L  L    + L          +L  L  + 
Sbjct: 372 DLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF--SPAHIEQVHLSKNKIEGRLE 352
           +   N +      F  L++L  L ++ NS      S    +  ++  + LSK ++E    
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 353 SIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 412
            +      L  L++S+N L     +  ++L  L+ L  + N I+    +     K +   
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 413 DLSHNNLS 420
           +L++N+++
Sbjct: 551 NLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  154 bits (390), Expect = 9e-40
 Identities = 76/461 (16%), Positives = 146/461 (31%), Gaps = 61/461 (13%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
           +   L  +  LIL+ N              L+ L+                +     L  
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGS--FSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 74  ISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPN---WLLENNTNLVMLLLANNS 129
           ++++  +I     P +  +  +L + DLS+  +     N   +L EN    + L ++ N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 130 L----FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGL---------------- 169
           +      +F+        L  L +  NF   +I       L GL                
Sbjct: 193 IDFIQDQAFQGI-----KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 170 ----------------MDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
                            +  L+           F  +  +  + ++   +   + +    
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED--VP 304

Query: 214 GCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 273
             F  + L++    L+        +L  L  L L  NK  G I         L  L LS 
Sbjct: 305 KHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSR 359

Query: 274 NHLS--GEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLP-S 330
           N LS  G         ++L  + +  N     +   F  L  L+ LD  ++++      S
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 331 CFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYL 388
            F     +  + +S    +   + I      L TL ++ N    +  + +      L +L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 389 LLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
            L+   ++         L  ++L+++SHNNL     S    
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  144 bits (365), Expect = 1e-36
 Identities = 78/455 (17%), Positives = 158/455 (34%), Gaps = 64/455 (14%)

Query: 146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG 205
           T    +      +P +I +      +++LS N        SF++   L+ LD+S  ++  
Sbjct: 15  TYQCMDQKLS-KVPDDIPSST---KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 206 EIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYL 265
            I ++   G   L  L L+ N +Q         LT+L  L     K        + +   
Sbjct: 71  -IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 266 LGGLYLSDNHLSG-EIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKI----LDLS 320
           L  L ++ N +   ++P +  NL+ L  + +  N ++     +   L         LD+S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 321 NNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL-ESIIHDSPYLVTLDLSYNRLHGSI---- 375
            N I       F    + ++ L  N     + ++ + +   L    L             
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 376 --PNRIDRLPQL--NYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTA 431
             P+ ++ L  +  +   L +     +  V+   L  V  + L+  ++  ++     +  
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFK 308

Query: 432 LSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSM 491
                              S+ I  C               QF T +         L  +
Sbjct: 309 WQ-----------------SLSIIRCQLK------------QFPTLD---------LPFL 330

Query: 492 SGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLL 549
             + L+ NK +  I  +   L  +  L+LS N L+ +   ++S+L    +  LDLS+N  
Sbjct: 331 KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 550 HGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 584
              +    + L  L+     ++ L   + + + F 
Sbjct: 389 II-MSANFMGLEELQHLDFQHSTLKR-VTEFSAFL 421

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  137 bits (346), Expect = 5e-34
 Identities = 79/406 (19%), Positives = 143/406 (35%), Gaps = 30/406 (7%)

Query: 181 GSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG---HIFSKKF 237
           GS+      +  +      D +L+ ++P+ + +   S K + LS N L+    + FS   
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFS--- 53

Query: 238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297
           N + L  L L   +      ++    + L  L L+ N +    P     L++LE +    
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 298 NNLEGPIPIEFCQLSALKILDLSNNSIFG-TLPSCFSP-AHIEQVHLSKNKI----EGRL 351
             L         QL  LK L++++N I    LP+ FS   ++  V LS N I       L
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 352 ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVR 410
           + +  +    ++LD+S N +   I ++  +  +L+ L L  N+    I     Q L  + 
Sbjct: 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 411 LIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEE 470
           +  L                       E +   +I   R +              +    
Sbjct: 233 VHRLILGEFKDERN----LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 471 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIP 530
            +     ++ Y            + +   +L  + PT    L  + +L L+ N    +I 
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLTMNKG--SIS 343

Query: 531 TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNT--LEVFKVAYNNLS 574
                L  +  LDLS N L          L T  L    +++N   
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (317), Expect = 2e-30
 Identities = 68/329 (20%), Positives = 118/329 (35%), Gaps = 27/329 (8%)

Query: 5   INLLKTSLISLMHLISMEKLILSNNHFFQI-PISLEPLFNLSKLKTFDGEICAETESHYN 63
           + + + S++  +  +++++  L+  + F    +    L N+S +      I      +  
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-----KYLE 301

Query: 64  SLTPKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTN 119
            +   F+  S+S+             P        LK+  L+    S  F    L    +
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPTLDLPF-------LKSLTLTMNKGSISFKKVAL---PS 351

Query: 120 LVMLLLANNSLFGSFRMPIH--SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN 177
           L  L L+ N+L  S           +L  LD+S N     I       L  L  L+   +
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHS 409

Query: 178 AFNGSIP-SSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKK 236
                   S+F  ++ L  LDIS         + +  G  SL  L ++ NS + +  S  
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 237 F-NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM 295
           F N TNL  L L   +            + L  L +S N+L          L +L  +  
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 296 PNNNLEGPIPIEFCQLSALKILDLSNNSI 324
             N +E    I      +L   +L+NNS+
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  103 bits (259), Expect = 3e-23
 Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 16/257 (6%)

Query: 2   SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFD------GEIC 55
           SL+I   +      + L  ++ L L+ N              L  L   D          
Sbjct: 311 SLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNALSFSG 366

Query: 56  AETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLE 115
             + S   +      L  + LS +              +L++ D  H  L          
Sbjct: 367 CCSYSDLGTN----SLRHLDLS-FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421

Query: 116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS 175
           +   L+ L ++  +    F        +L TL ++ N F  +    +      L  L+LS
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

Query: 176 RNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSK 235
           +          F  +  L+ L++S N L   +        +SL  L  S N ++      
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 236 KFNLTNLMRLQLDGNKF 252
           +    +L    L  N  
Sbjct: 541 QHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 46/323 (14%), Positives = 88/323 (27%), Gaps = 50/323 (15%)

Query: 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYL 361
           G +      +  +      +  +   +P    P+  + + LS N ++        +   L
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSEL 58

Query: 362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG 421
             LDLS   +          L  L+ L+L  N I+   P     L  +  +      L+ 
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 422 HIPSCLVN-TALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMS 480
                +     L                   + ++         P        F+     
Sbjct: 119 LESFPIGQLITLK-----------------KLNVAHNFIHSCKLPA------YFSN---- 151

Query: 481 YYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHA----LNLSHNNLTGTIPTTFSNL 536
                  LT++  +DLS N +       + +L         L++S N +       F  +
Sbjct: 152 -------LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204

Query: 537 KQIESLDLSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNP 595
           K +  L L  N     I    +  L  L V ++       +         FE    EG  
Sbjct: 205 K-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER----NLEIFEPSIMEGLC 259

Query: 596 FLCGKPLSKSCNHNGLTTVTPEA 618
            +          +    +     
Sbjct: 260 DVTIDEF--RLTYTNDFSDDIVK 280

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  179 bits (457), Expect = 1e-48
 Identities = 85/434 (19%), Positives = 150/434 (34%), Gaps = 30/434 (6%)

Query: 6   NLLKTSLISLMHLISMEKLILSNNHFFQI-PISLEPLFNLSKLKTFDGEICAETESHYNS 64
           ++    L        ++ L   NN    +    +  L   + L + +         + N 
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLN--------LNGND 190

Query: 65  LT-------PKFQLTSISLSGYIDGGTFPKFLYHQH--DLKNADLSHLNLSGQFPNWLLE 115
           +              S++  G  +     K L +     L       ++     P     
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 116 N-NTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNL 174
               ++  + L  +  F       H    L  LD++       +P  +   L  L  L L
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVL 308

Query: 175 SRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFS 234
           S N F      S ++   L  L I  N    E+         +L+ L LS++ ++     
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 235 KK--FNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPR-WLGNLSALE 291
                NL++L  L L  N+ +    E+  +C  L  L L+   L  +  +    NL  L+
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 292 GIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP----AHIEQVHLSKNKI 347
            + + ++ L+      F  L AL+ L+L  N          +       +E + LS   +
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 348 EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK 407
               +        +  +DLS+NRL  S    +  L  + YL LA N+I   +P  L  L 
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547

Query: 408 EVRLIDLSHNNLSG 421
           + R I+L  N L  
Sbjct: 548 QQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  173 bits (441), Expect = 1e-46
 Identities = 79/502 (15%), Positives = 144/502 (28%), Gaps = 79/502 (15%)

Query: 90  YHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV 149
             +   K  +  +L L+ + P  L     +   L  + N L            NL  LD+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE 209
           +    +  I  +       L  L L+ N       ++ +  K L+ L      ++  I  
Sbjct: 65  TRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDF 122

Query: 210 RMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGL 269
                  +L+ L L +N +      K F    L  L    N       E +S       L
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 270 YLSDNHLS-GEIPRWLGNLSALEGIRMPNNNLEGPIP--IEFCQLSALKILDLSNNSIFG 326
            L+ N      I     + +  + +          I   ++   + +L +    +     
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 327 TLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLN 386
             P+ F                            + +++L  +       N       L 
Sbjct: 243 ISPAVFEGLC---------------------EMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 387 YLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTA------LSGGHHEAV 440
            L L   ++  E+P  L  L  ++ + LS N           N        + G      
Sbjct: 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK 500
             T                                            L ++  +DLS + 
Sbjct: 341 LGTGCLEN---------------------------------------LENLRELDLSHDD 361

Query: 501 LT--GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI 558
           +        Q+  LS + +LNLS+N         F    Q+E LDL++  L  K      
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 559 V-LNTLEVFKVAYNNLSGKIPD 579
             L+ L+V  ++++ L      
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  166 bits (423), Expect = 4e-44
 Identities = 87/434 (20%), Positives = 152/434 (35%), Gaps = 29/434 (6%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
           +L    +++ L         I     PL N   L++        +        P  +L  
Sbjct: 100 ALSGPKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

Query: 74  ISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSG----QFPNWLLENNTNLVMLLL 125
           +        Y+              L+ A    LNL+G           ++     +   
Sbjct: 158 LDFQNNAIHYLSKEDM-------SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 126 ANNSLFGSFRMPIHSH-QNLATLDVSNNFFHGHIPVEI-GTYLPGLMDLNLSRNAFNGSI 183
              +L   F+   +S  Q+L      +       P    G     +  +NL ++ F    
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 184 PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLM 243
            ++F     L+ LD++   L+ E+P  +  G  +LK L LS N  +        N  +L 
Sbjct: 271 SNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 244 RLQLDGNKFIGEI-PESLSKCYLLGGLYLSDNHL--SGEIPRWLGNLSALEGIRMPNNNL 300
            L + GN    E+    L     L  L LS + +  S      L NLS L+ + +  N  
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 301 EGPIPIEFCQLSALKILDLSNNSIFGTLP-SCFS-PAHIEQVHLSKNKIEGRLESIIHDS 358
                  F +   L++LDL+   +      S F     ++ ++LS + ++   E +    
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 359 PYLVTLDLSYNRLHGSI---PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLS 415
           P L  L+L  N          N +  L +L  L+L+   +          LK +  +DLS
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 416 HNNLSGHIPSCLVN 429
           HN L+      L +
Sbjct: 509 HNRLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (405), Expect = 1e-41
 Identities = 73/429 (17%), Positives = 133/429 (31%), Gaps = 26/429 (6%)

Query: 14  SLMHLISMEKLILSNNHFFQI-PISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLT 72
           +   LI++  L L+    + I   + +    L  L      +    E+  +       L 
Sbjct: 52  TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK---ALK 108

Query: 73  SISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANN 128
            +         ID         +Q  L++  L   ++S             L +L   NN
Sbjct: 109 HLFFIQTGISSIDFIPLH----NQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNN 163

Query: 129 SLFGSFRMPIHSHQNLA--TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS- 185
           ++    +  + S Q     +L+++ N     I             LN         I   
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFD-SAVFQSLNFGGTQNLLVIFKG 221

Query: 186 -SFADMKMLERLDISDNQLTGEIPERMATGCF-SLKILALSNNSLQGHIFSKKFNLTNLM 243
              + ++ L      D       P      C  S++ + L  +       +     + L 
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
            L L     + E+P  L     L  L LS N           N  +L  + +  N     
Sbjct: 282 ELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 304 IPIE-FCQLSALKILDLSNNSI--FGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSP 359
           +       L  L+ LDLS++ I             +H++ ++LS N+          + P
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 360 YLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNN 418
            L  LDL++ RL           L  L  L L+H+ +          L  ++ ++L  N+
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 419 LSGHIPSCL 427
                    
Sbjct: 461 FPKGNIQKT 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (385), Expect = 4e-39
 Identities = 80/431 (18%), Positives = 141/431 (32%), Gaps = 23/431 (5%)

Query: 2   SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKT--FDGEICAETE 59
           +L  N +             + L         +         +  L    F+     +  
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 60  SHYNSLTPKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLE 115
                   +  + SI+L       I   TF  F      L+  DL+  +LS + P+ L  
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCF----SGLQELDLTATHLS-ELPSGL-V 298

Query: 116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS 175
             + L  L+L+ N      ++   +  +L  L +  N     +       L  L +L+LS
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 176 RNAFNGS--IPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIF 233
            +    S        ++  L+ L++S N+    +       C  L++L L+   L+    
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 234 SKKF-NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEI---PRWLGNLSA 289
              F NL  L  L L  +       +       L  L L  NH           L  L  
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 290 LEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEG 349
           LE + +   +L       F  L  +  +DLS+N +  +     S      ++L+ N I  
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI 537

Query: 350 RLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV 409
            L S++       T++L  N L  +  N       L +       ++            +
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLDCTCSNI----YFLEWYKENMQKLEDTEDTLCENPPLL 593

Query: 410 RLIDLSHNNLS 420
           R + LS   LS
Sbjct: 594 RGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  150 bits (380), Expect = 2e-38
 Identities = 65/450 (14%), Positives = 123/450 (27%), Gaps = 103/450 (22%)

Query: 146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG 205
           T +  N   +  IP  +         L  S N       ++F+ +  L  LD++  Q+  
Sbjct: 16  TYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 206 EIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYL 265
                     F                     +   L  L L  N  I     +LS    
Sbjct: 72  IHE-----DTFQ--------------------SQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 266 LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325
           L  L+     +S      L N   LE + + +N++      +      LK+LD  NN+I 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQL 385
                  S         +                  ++L+L+ N +   I          
Sbjct: 167 YLSKEDMSSLQ----QAT-----------------NLSLNLNGNDI-AGIEPGAFDSAVF 204

Query: 386 NYLLLAHNYIKGEIPVQL--CQLKEVRLIDLSHNNLSGHIPSCLVNTA--------LSGG 435
             L          I   L    ++ + L      +     P+              L   
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 436 HHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGID 495
           +   ++  +  C                                         + +  +D
Sbjct: 265 YFFNISSNTFHC----------------------------------------FSGLQELD 284

Query: 496 LSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP 555
           L+   L+ E+P+ +  LS +  L LS N        + SN   +  L +  N    ++  
Sbjct: 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

Query: 556 QLI-VLNTLEVFKVAYNNLSGKIPDRAQFS 584
             +  L  L    ++++++        Q  
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  147 bits (373), Expect = 1e-37
 Identities = 67/408 (16%), Positives = 123/408 (30%), Gaps = 66/408 (16%)

Query: 22  EKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYID 81
           +     N    +IP +L                                           
Sbjct: 15  KTYNCENLGLNEIPGTLPN----------------------------------------- 33

Query: 82  GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSH 141
                         +  + S   L     N       NL  L L    ++        S 
Sbjct: 34  ------------STECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ 80

Query: 142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN 201
             L TL ++ N     +     +    L  L   +   +        + K LE L +  N
Sbjct: 81  HRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139

Query: 202 QLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNK-FIGEIPES 259
            ++  I          LK+L   NN++  ++  +   +L     L L+ N   I  I   
Sbjct: 140 HISS-IKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197

Query: 260 LSKCYLLGGLYLSDNHLSGEIPRWLGN--LSALEGIRMPNNNLEGPIPIEFCQLSA--LK 315
                +   L          I + L N  + +L      + + E   P  F  L    ++
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 316 ILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS 374
            ++L  +  F    + F   + ++++ L+   +   L S +     L  L LS N+    
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL 316

Query: 375 IPNRIDRLPQLNYLLLAHNYIKGEIPVQ-LCQLKEVRLIDLSHNNLSG 421
                   P L +L +  N  + E+    L  L+ +R +DLSH+++  
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (367), Expect = 8e-37
 Identities = 56/369 (15%), Positives = 99/369 (26%), Gaps = 44/369 (11%)

Query: 219 KILALSNNSLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 275
           K     N  L    G + +      +   L+   N        + S+   L  L L+   
Sbjct: 15  KTYNCENLGLNEIPGTLPN------STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 276 LSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP- 334
           +         +   L+ + +  N L            ALK L      I           
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLN--YLLLAH 392
             +E ++L  N I          +  L  LD   N +H      +  L Q     L L  
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 393 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASV 452
           N I   I          + ++         I   L N+ +           S+W G    
Sbjct: 189 NDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ----------SLWLGTFED 237

Query: 453 YISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYL 512
                +       + +                     S+  I+L  +             
Sbjct: 238 MDDEDISPAVFEGLCE--------------------MSVESINLQKHYFFNISSNTFHCF 277

Query: 513 SGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNN 572
           SG+  L+L+  +L+  +P+    L  ++ L LS N              +L    +  N 
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 573 LSGKIPDRA 581
              ++    
Sbjct: 337 KRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSG---IHALNLSHNNLTGTIPTTFSNLKQIESLDL 544
           L ++  ++L  N        +   L     +  L LS  +L+      F++LK +  +DL
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 545 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSY---EGNPFLC 598
           S+N L      + +         +A N++S  +P         +        NP  C
Sbjct: 508 SHNRLTS-SSIEALSHLKGIYLNLASNHISIILPS--LLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 488 LTSMSGIDLSCNKLTG-EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
              +  +DL+  +L   +  +    L  +  LNLSH+ L  +    F  L  ++ L+L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 547 NLLHGKI---PPQLIVLNTLEVFKVAYNNLSGKIPD 579
           N            L  L  LE+  +++ +LS     
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  159 bits (403), Expect = 7e-41
 Identities = 113/633 (17%), Positives = 212/633 (33%), Gaps = 74/633 (11%)

Query: 99  DLSHLNLSG----QFPNWLLENNTNLVMLLLANNSLFGSF-RMPIHSHQNLATLDVSNNF 153
               L LS                 L +L L +     +  +    +  NL  LD+ ++ 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERLDISDNQLTGEIPERM 211
            +  +  +    L  L +L L     + ++     F ++K L RLD+S NQ+        
Sbjct: 85  IY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 212 ATGCFSLKILALSNNSLQGHIFSKKFN---LTNLMRLQLDGNKFIGEIPESLSKCY---- 264
                SLK +  S+N +   +   +        L    L  N     +     KC     
Sbjct: 144 FGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 265 --LLGGLYLSDNHLSGEIPR------------WLGNLSALEGIRMPNNNLEGPIPIEFCQ 310
             +L  L +S N  + +I               L     + G     +N++ P    F  
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 311 L--SALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLS 367
           L  S+++ LDLS+  +F      F     ++ ++L+ NKI    +   +    L  L+LS
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 368 YNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG-HIPSC 426
           YN L     +    LP++ Y+ L  N+I          L++++ +DL  N L+  H    
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382

Query: 427 LVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGR 486
           + +  LSG     +    I      +++S                       ++      
Sbjct: 383 IPDIFLSGNKLVTL--PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 487 I--------LTSMSGIDLSCNKLTGEIPTQI-----GYLSGIHALNLSHNNLTGTIPTTF 533
                      S+  + L  N L     T++       LS +  L L+HN L    P  F
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 534 SNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEG 593
           S+L  +  L L+ N L   +    +    LE+  ++ N L    P+   F +        
Sbjct: 501 SHLTALRGLSLNSNRLT-VLSHNDL-PANLEILDISRNQLL--APNPDVFVSLSVLDITH 556

Query: 594 NPFLC------------GKPLSKSCNHNGLTTVTPEASTENQ---------GDSLIDTDS 632
           N F+C               ++ +     +  V P++ +             +  +    
Sbjct: 557 NKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSL 616

Query: 633 FLITFTVSYGIVIIGIIGVLYINPYWRRRWFYL 665
               F V    + + ++ +L +  +    +   
Sbjct: 617 KFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  147 bits (372), Expect = 6e-37
 Identities = 112/688 (16%), Positives = 208/688 (30%), Gaps = 136/688 (19%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
           +  +L ++  L L ++  + +         L  L             ++        L+ 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDA--FQGLFHLFELR--------LYFC------GLSD 111

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL--- 130
             L           +  +   L   DLS   +   + +       +L  +  ++N +   
Sbjct: 112 AVLK--------DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 131 -FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS-------------- 175
                  P+   + L+   ++ N  +  + V+ G  +    ++ L               
Sbjct: 164 CEHELE-PLQ-GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 176 ---RNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCF--SLKILALSNN---S 227
               NA + S   S      +       + +  +  +    G    S++ L LS+    S
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 228 LQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGN 286
           L   +F     L +L  L L  NK I +I + +      L  L LS N L          
Sbjct: 281 LNSRVFE---TLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 287 LSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNK 346
           L  +  I +  N++       F  L  L+ LDL +N++     +      I  + LS NK
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL----TTIHFIPSIPDIFLSGNK 392

Query: 347 IEGRLESIIHDSPYLVTLDLSYNRLHG-SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 405
               L ++   +     + LS NRL    I   + R+P L  L+L  N        Q   
Sbjct: 393 ----LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 406 -LKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAP 464
               +  + L  N L     + L      G                              
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEG------------------------------ 478

Query: 465 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNN 524
                                  L+ +  + L+ N L    P    +L+ +  L+L+ N 
Sbjct: 479 -----------------------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 525 LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 584
           LT            +E LD+S N L     P   V  +L V  + +N    +     + S
Sbjct: 516 LTVLSHNDL--PANLEILDISRNQLL-APNPD--VFVSLSVLDITHNKFICEC----ELS 566

Query: 585 TFEEDSYEGNPFLCGKPLSKSCNHNG------LTTVTPEASTENQGDSLIDTDSFLITFT 638
           TF       N  + G P    C +        L +++ E   E +    +    F++   
Sbjct: 567 TFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTV 626

Query: 639 VSYGIVIIGIIGVLYINPYWRRRWFYLV 666
                ++  +    +    +        
Sbjct: 627 TLTLFLMTILTVTKFRGFCFICYKTAQR 654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  138 bits (348), Expect = 6e-34
 Identities = 89/457 (19%), Positives = 159/457 (34%), Gaps = 50/457 (10%)

Query: 3   LTINLLKTSLIS---LMHLISMEKLILSNNHFFQIPISLEPLF-NLSKLKTFDGEICAET 58
           L    L  +++      +L ++ +L LS N    +   L P F  L+ LK+ D       
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--LHPSFGKLNSLKSIDFSSNQIF 161

Query: 59  ESHYNSLTP--KFQLTSISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWL-- 113
               + L P     L+  SL+   +       +    +  +N  L  L++SG        
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 114 --------------LENNTNLVMLLLANNSL--FGSFRMPIHSHQNLATLDVSNNFFHGH 157
                         L    +++      +++           +  ++  LD+S+ F    
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-S 280

Query: 158 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFS 217
           +   +   L  L  LNL+ N  N     +F  +  L+ L++S N L  E+      G   
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPK 339

Query: 218 LKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 276
           +  + L  N +   I  + F  L  L  L L  N        ++     +  ++LS N L
Sbjct: 340 VAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKL 393

Query: 277 SGEIPRWLGNLSALEGIRMPNNNLEG-PIPIEFCQLSALKILDLSNNSIFGTLPSCF--S 333
                  L        I +  N LE   I     ++  L+IL L+ N             
Sbjct: 394 VTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 334 PAHIEQVHLSKNKIEGRLESIIHDS-----PYLVTLDLSYNRLHGSIPNRIDRLPQLNYL 388
              +EQ+ L +N ++   E+ +         +L  L L++N L+   P     L  L  L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 389 LLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
            L  N +   +         + ++D+S N L    P 
Sbjct: 510 SLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  121 bits (305), Expect = 1e-28
 Identities = 79/421 (18%), Positives = 135/421 (32%), Gaps = 67/421 (15%)

Query: 171 DLNLSRNAFNG--SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSL 228
           D  ++   F     +P     +   ERL +S N +   +          L++L L +   
Sbjct: 5   DGRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYT 60

Query: 229 QGHIFSKKF-NLTNLMRLQLDGNKFIGEIPES-LSKCYLLGGLYLSDNHLSGEI--PRWL 284
              I  + F NL NL  L L  +K I  +        + L  L L    LS  +    + 
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 285 GNLSALEGIRMPNNNLEG-PIPIEFCQLSALKILDLSNNSIFGTLPSCFSP---AHIEQV 340
            NL AL  + +  N +    +   F +L++LK +D S+N IF        P     +   
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 341 HLSKNKIEGRLESIIHDSP------YLVTLDLSYNRLHGSIP-NRIDRLPQLNYLLLAHN 393
            L+ N +  R+               L  LD+S N     I  N  + + +     L   
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

Query: 394 YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVY 453
           +      +         + D   N  +G   S + +  LS G   ++             
Sbjct: 240 HH-----IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET------ 288

Query: 454 ISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLS 513
                                             L  +  ++L+ NK+          L 
Sbjct: 289 ----------------------------------LKDLKVLNLAYNKINKIADEAFYGLD 314

Query: 514 GIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL 573
            +  LNLS+N L     + F  L ++  +DL  N +          L  L+   +  N L
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 574 S 574
           +
Sbjct: 375 T 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  117 bits (294), Expect = 2e-27
 Identities = 67/371 (18%), Positives = 121/371 (32%), Gaps = 35/371 (9%)

Query: 216 FSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 275
           F  +I      +L   +      L    RL L  N        S      L  L L   +
Sbjct: 4   FDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 276 LSGEI-PRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP 334
               I      NL  L  + + ++ +    P  F  L  L  L L    +   +      
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 335 AH---IEQVHLSKNKIEG-RLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRL--PQLNYL 388
            +   + ++ LSKN+I    L         L ++D S N++     + ++ L    L++ 
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 389 LLAHNYIKGEIPVQLCQLKEV-RLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWC 447
            LA N +   + V   +     R + L   ++SG+  +  +    S              
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA------------ 227

Query: 448 GRASVYISACLPSRSAPPMGKEETVQFTTKNMSY----YYQGRILTSMSGIDLSCNKLTG 503
                   +   + S           F   N+       + G   +S+  +DLS   +  
Sbjct: 228 -------ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 504 EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
                   L  +  LNL++N +       F  L  ++ L+LSYNLL          L  +
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

Query: 564 EVFKVAYNNLS 574
               +  N+++
Sbjct: 341 AYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.5 bits (248), Expect = 1e-21
 Identities = 70/365 (19%), Positives = 126/365 (34%), Gaps = 35/365 (9%)

Query: 5   INLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNS 64
           I     +  + +   S+  L LS+   F +   +     L  LK  +       +    +
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV--FETLKDLKVLNLAYNKINKIADEA 309

Query: 65  LTPKFQLTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNL 120
                 L  ++LS      +    F    Y    +   DL   +++    +   +    L
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNF----YGLPKVAYIDLQKNHIA-IIQDQTFKFLEKL 364

Query: 121 VMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFN 180
             L L +N+L       IH   ++  + +S N         +         ++LS N   
Sbjct: 365 QTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLE 414

Query: 181 G-SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG----HIFSK 235
              I      +  L+ L ++ N+ +    ++  +   SL+ L L  N LQ      +   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 236 KF-NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIR 294
            F  L++L  L L+ N      P   S    L GL L+ N L+  +       + LE + 
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILD 532

Query: 295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESI 354
           +  N L  P P  F    +L +LD+++N        C     I  ++ +   I G    I
Sbjct: 533 ISRNQLLAPNPDVF---VSLSVLDITHNKFICE---CELSTFINWLNHTNVTIAGPPADI 586

Query: 355 IHDSP 359
               P
Sbjct: 587 YCVYP 591

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (358), Expect = 3e-36
 Identities = 99/485 (20%), Positives = 165/485 (34%), Gaps = 72/485 (14%)

Query: 95  LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFF 154
           +       L +        +E   NL  +  +NN L      P+ +   L  + ++NN  
Sbjct: 48  VTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQI 102

Query: 155 HGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATG 214
               P+     L  L  L L  N      P    ++  L RL++S N ++        +G
Sbjct: 103 ADITPLA---NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL---SG 154

Query: 215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274
             SL+ L+  N        +   NLT L RL +  NK        L+K   L  L  ++N
Sbjct: 155 LTSLQQLSFGNQVTDLKPLA---NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 209

Query: 275 HLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP 334
            +S   P  LG L+ L+ + +  N L+    +    L+ L  LDL+NN I   L      
Sbjct: 210 QISDITP--LGILTNLDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQI-SNLAPLSGL 264

Query: 335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNY 394
             + ++ L  N+I     S +     L  L+L+ N+L    P  I  L  L YL L  N 
Sbjct: 265 TKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320

Query: 395 IKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYI 454
           I    P  +  L +++ +   +N +S  + S    T ++                  +  
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKVSD-VSSLANLTNIN-----------------WLSA 360

Query: 455 SACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSG 514
                     P+                     LT ++ + L+    T        Y + 
Sbjct: 361 GHN-QISDLTPLAN-------------------LTRITQLGLNDQAWTNAPVN---YKAN 397

Query: 515 IHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL 573
           +   N   N     I P T S+       D+++NL            +            
Sbjct: 398 VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTF 456

Query: 574 SGKIP 578
           SG + 
Sbjct: 457 SGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (340), Expect = 5e-34
 Identities = 89/423 (21%), Positives = 158/423 (37%), Gaps = 59/423 (13%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
           T  +S   L  +  L            S++ +  L+ L   +                  
Sbjct: 37  TDTVSQTDLDQVTTLQADRLGI----KSIDGVEYLNNLTQINFSNN-------------- 78

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
           QLT I+             L +   L +  +++  ++   P   L N TNL  L L NN 
Sbjct: 79  QLTDIT------------PLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQ 123

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 189
           +      P+ +  NL  L++S+N       +     L  L  L+        +     A+
Sbjct: 124 ITDID--PLKNLTNLNRLELSSNTISDISALS---GLTSLQQLSFGNQV---TDLKPLAN 175

Query: 190 MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDG 249
           +  LERLDIS N+++            +L+ L  +NN +          LTNL  L L+G
Sbjct: 176 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNG 230

Query: 250 NKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC 309
           N+       +L+    L  L L++N +S   P  L  L+ L  +++  N +    P+   
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA-- 284

Query: 310 QLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369
            L+AL  L+L+ N +   +    +  ++  + L  N I       +     L  L    N
Sbjct: 285 GLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341

Query: 370 RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
           ++  S  + +  L  +N+L   HN I    P  L  L  +  + L+    +    +   N
Sbjct: 342 KV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 430 TAL 432
            ++
Sbjct: 398 VSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  128 bits (325), Expect = 5e-32
 Identities = 89/402 (22%), Positives = 152/402 (37%), Gaps = 39/402 (9%)

Query: 24  LILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSI-SLSGYIDG 82
            I  +    QI         L++            +++      +  L  + +L     G
Sbjct: 7   TITQDTPINQI----FTDTALAEKMKTV-----LGKTNVTDTVSQTDLDQVTTLQADRLG 57

Query: 83  GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQ 142
                 + + ++L   + S+  L+   P   L+N T LV +L+ NN +      P+ +  
Sbjct: 58  IKSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADIT--PLANLT 112

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ 202
           NL  L + NN      P++    L  L  L LS N  +    S+ + +  L++L    NQ
Sbjct: 113 NLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQ 166

Query: 203 LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSK 262
           +T   P        +L+ L +S+N +     S    LTNL  L    N+     P  L  
Sbjct: 167 VTDLKPL---ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGI 219

Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNN 322
              L  L L+ N L       L +L+ L  + + NN +    P+    L+ L  L L  N
Sbjct: 220 LTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 275

Query: 323 SIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRL 382
            I   +        +  + L++N++E    S I +   L  L L +N +    P  +  L
Sbjct: 276 QI-SNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSL 330

Query: 383 PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP 424
            +L  L   +N +       L  L  +  +   HN +S   P
Sbjct: 331 TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (299), Expect = 1e-28
 Identities = 86/419 (20%), Positives = 149/419 (35%), Gaps = 58/419 (13%)

Query: 2   SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESH 61
           + + N L T +  L +L  +  ++++NN        + PL NL+ L              
Sbjct: 74  NFSNNQL-TDITPLKNLTKLVDILMNNNQI----ADITPLANLTNLTGLT--------LF 120

Query: 62  YNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLV 121
            N      Q+T I              L +  +L   +LS   +S       L   T+L 
Sbjct: 121 NN------QITDID------------PLKNLTNLNRLELSSNTISD-ISA--LSGLTSLQ 159

Query: 122 MLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG 181
            L   N         P+ +   L  LD+S+N       + +   L  L  L  + N  + 
Sbjct: 160 QLSFGNQVTDLK---PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISD 213

Query: 182 SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTN 241
             P     +  L+ L ++ NQL  +I         +L  L L+NN +     +    LT 
Sbjct: 214 ITP--LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISN--LAPLSGLTK 266

Query: 242 LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301
           L  L+L  N+     P  L+    L  L L++N L    P  + NL  L  + +  NN+ 
Sbjct: 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322

Query: 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYL 361
              P+    L+ L+ L   NN +   + S  +  +I  +    N+I   L  + +    +
Sbjct: 323 DISPVS--SLTKLQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQISD-LTPLAN-LTRI 377

Query: 362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
             L L+      +  N    +   N +      +    P  +         D++ N  S
Sbjct: 378 TQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           L +++ + L  N ++   P  +  L+ +  L   +N ++    ++ +NL  I  L   +N
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHN 363

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
            +    P  L  L  +    +     +    +
Sbjct: 364 QISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 6/91 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           L       L    +T  +      L  +  L      +          L  +  ++ S N
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNN 78

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 578
            L    P  L  L  L    +  N ++   P
Sbjct: 79  QLTDITP--LKNLTKLVDILMNNNQIADITP 107

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 7e-36
 Identities = 89/559 (15%), Positives = 166/559 (29%), Gaps = 103/559 (18%)

Query: 20  SMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79
           +M+ L LS N    I      L   + L+              + +              
Sbjct: 27  AMKSLDLSFNKITYIGHG--DLRACANLQVLIL--------KSSRIN------------T 64

Query: 80  IDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFG-SFRMPI 138
           I+G  F    Y    L++ DLS  +LS    +      ++L  L L  N           
Sbjct: 65  IEGDAF----YSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 139 HSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI 198
            +  NL TL + N      I       L  L +L +   +       S   ++ +  L +
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 199 SDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE 258
             ++    + E  A    S++ L L + +L    FS          ++    +      E
Sbjct: 180 HLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 259 SLSKCYLLGGLYLSDNHLSGEIPRWLG------------------NLSALEGIRMPNNNL 300
           S ++   L    L  + +  +     G                      +  + +P   L
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

Query: 301 EGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPA-HIEQVHLSKNKIE---GRLESIIH 356
              +   +  L  +K + + N+ +F    S       +E + LS+N +     +  +   
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

Query: 357 DSPYLVTLDLSYNRLH--GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 414
             P L TL LS N L         +  L  L  L ++ N     +P      +++R ++L
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 415 SHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQF 474
           S   +                                  +  C+P               
Sbjct: 418 SSTGIR--------------------------------VVKTCIPQT------------L 433

Query: 475 TTKNMSYYYQGRI---LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT 531
              ++S          L  +  + +S NKL   +P        +  + +S N L      
Sbjct: 434 EVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDG 491

Query: 532 TFSNLKQIESLDLSYNLLH 550
            F  L  ++ + L  N   
Sbjct: 492 IFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (302), Expect = 1e-28
 Identities = 68/393 (17%), Positives = 129/393 (32%), Gaps = 42/393 (10%)

Query: 196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIG 254
            D      T  IP  +     ++K L LS N +  +I         NL  L L  ++ I 
Sbjct: 10  CDGRSRSFT-SIPSGLTA---AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR-IN 63

Query: 255 EIP-ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNL-EGPIPIEFCQLS 312
            I  ++      L  L LSDNHLS     W G LS+L+ + +  N      +   F  L+
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
            L+ L + N   F  +                                L  L++    L 
Sbjct: 124 NLQTLRIGNVETFSEIR----------------------RIDFAGLTSLNELEIKALSLR 161

Query: 373 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTAL 432
                 +  +  +++L L  +     + +    L  VR ++L   NL+    S L    +
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

Query: 433 SGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI----- 487
           S    +     S+    +   +   L         + +             +  +     
Sbjct: 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281

Query: 488 ---LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDL 544
                ++  + +    L  ++ T    L  +  + + ++ +     +   +LK +E LDL
Sbjct: 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

Query: 545 SYNLLHGKIPPQLIVLNT---LEVFKVAYNNLS 574
           S NL+  +             L+   ++ N+L 
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (301), Expect = 1e-28
 Identities = 79/443 (17%), Positives = 152/443 (34%), Gaps = 36/443 (8%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ 202
            + +LD+S N    +I          L  L L  +  N     +F  +  LE LD+SDN 
Sbjct: 27  AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 203 LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPE-SL 260
           L+  +         SLK L L  N  Q    +  F NLTNL  L++   +   EI     
Sbjct: 86  LS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 261 SKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLS 320
           +    L  L +    L     + L ++  +  + +  +     + I    LS+++ L+L 
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 321 NNSIFGTLPSCFSPAHI-EQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI 379
           + ++     S      +   +     +     +   ++   L+   L  + +        
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------F 258

Query: 380 DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEA 439
           D            +         + +L +V  + +       HIP   +   LS  +   
Sbjct: 259 DDCTLNGLGDFNPSESD-----VVSELGKVETVTIRRL----HIPQFYLFYDLSTVYSLL 309

Query: 440 VAPTSIWCGRASVYISACLPSRSAPPMGKEETV-----QFTTKNMSYYYQGRILTSMSGI 494
                I    + V+    +P   +  +   E +         + +          S+  +
Sbjct: 310 EKVKRITVENSKVF---LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 495 DLSCNKLTGEIPTQIGYLSG---IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 551
            LS N L   +      L     + +L++S N     +P +    +++  L+LS   +  
Sbjct: 367 VLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR- 423

Query: 552 KIPPQLIVLNTLEVFKVAYNNLS 574
            +   +    TLEV  V+ NNL 
Sbjct: 424 VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (294), Expect = 9e-28
 Identities = 72/431 (16%), Positives = 147/431 (34%), Gaps = 45/431 (10%)

Query: 17  HLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFD-GEICAETESHYNSLTPKFQLTSIS 75
            L S++ L L  N +  + ++     NL+ L+T   G +   +E           L  + 
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 76  LSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLF 131
           +           +         D+ +  L     +        +  +++  L L + +L 
Sbjct: 155 IKALSLRNYQSQSLKSI----RDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209

Query: 132 GSFRMPI---HSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN--------------L 174
                P+        +  L    +        E+   L  +++L+               
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269

Query: 175 SRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFS 234
           + +  +        +   + RL I    L       + +    +K + + N+ +   +  
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVF-LVPC 327

Query: 235 KKF-NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGL---YLSDNHLS--GEIPRWLGNLS 288
               +L +L  L L  N  + E  ++ +       L    LS NHL    +    L  L 
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 289 ALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIE 348
            L  + +  N    P+P        ++ L+LS+  I   + +C  P  +E + +S N   
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKTCI-PQTLEVLDVSNN--- 441

Query: 349 GRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE 408
             L+S     P L  L +S N+L  ++P+     P L  + ++ N +K        +L  
Sbjct: 442 -NLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 409 VRLIDLSHNNL 419
           ++ I L  N  
Sbjct: 499 LQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (284), Expect = 2e-26
 Identities = 68/375 (18%), Positives = 136/375 (36%), Gaps = 35/375 (9%)

Query: 14  SLMHLISMEKLILSNNHFFQIP-ISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLT 72
           SL  +  +  L L  +    +  I  + L ++  L+  D  +     S          + 
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226

Query: 73  SISLSG-YIDGGTFPKFLY-HQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL 130
            ++  G  +   +F + L   ++ L+ +++   + +         + +++V  L    ++
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286

Query: 131 FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADM 190
                        +  L +   +   +    + + L  +  + +  +       S    +
Sbjct: 287 ------------TIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 191 KMLERLDISDNQLTGEIPERMA--TGCFSLKILALSNNSLQ-----GHIFSKKFNLTNLM 243
           K LE LD+S+N +  E  +  A      SL+ L LS N L+     G I      L NL 
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL---TLKNLT 390

Query: 244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
            L +  N     +P+S      +  L LS   +   +         LE + + NNNL+  
Sbjct: 391 SLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLDS- 445

Query: 304 IPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVT 363
             +    L  L+ L +S N +  TLP       +  + +S+N+++   + I      L  
Sbjct: 446 FSLF---LPRLQELYISRNKL-KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 364 LDLSYNRLHGSIPNR 378
           + L  N    S P  
Sbjct: 502 IWLHTNPWDCSCPRI 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (259), Expect = 2e-23
 Identities = 72/438 (16%), Positives = 127/438 (28%), Gaps = 55/438 (12%)

Query: 146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG 205
             D  +  F   IP  +      +  L+LS N               L+ L +  +++  
Sbjct: 9   VCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN- 63

Query: 206 EIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIG-EIPESLSKC 263
            I         SL+ L LS+N L   + S  F  L++L  L L GN +    +       
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 264 YLLGGLYLSDNHLSGEIPRW-LGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNN 322
             L  L + +     EI R     L++L  + +   +L          +  +  L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 323 SIFGTLPSCFSPAH-IEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDR 381
                L         +  + L    +     S +        +     R         + 
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVA 441
           L +L   +L              +L EV   D + N L G       +     G  E V 
Sbjct: 243 LLKLLRYIL--------------ELSEVEFDDCTLNGL-GDFNPSESDVVSELGKVETVT 287

Query: 442 PTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKL 501
              +       +I           +                     L  +  I +  +K+
Sbjct: 288 IRRL-------HIPQFYLFYDLSTVYSL------------------LEKVKRITVENSKV 322

Query: 502 TGEIPTQIGYLSGIHALNLSHNNLTGTIPTT---FSNLKQIESLDLSYNLLH--GKIPPQ 556
                +   +L  +  L+LS N +                +++L LS N L    K    
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 557 LIVLNTLEVFKVAYNNLS 574
           L+ L  L    ++ N   
Sbjct: 383 LLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 34/244 (13%), Positives = 75/244 (30%), Gaps = 14/244 (5%)

Query: 309 CQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSY 368
               A  + D  + S F ++PS    A ++ + LS NKI       +     L  L L  
Sbjct: 2   LSCDASGVCDGRSRS-FTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 369 NRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLV 428
           +R++    +    L  L +L L+ N++          L  ++ ++L  N     +    +
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSL 118

Query: 429 NTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI- 487
              L                  +V   + +       +     ++    ++  Y    + 
Sbjct: 119 FPNL---------TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 488 -LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
            +  +  + L  ++    +      LS +  L L   NL     +     +    +    
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 547 NLLH 550
               
Sbjct: 230 FRGS 233

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           +  +M  +DLS NK+T      +   + +  L L  + +       F +L  +E LDLS 
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 547 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFS 584
           N L   +       L++L+   +  N     +   + F 
Sbjct: 84  NHLS-SLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFP 120

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 36/198 (18%)

Query: 6   NLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSL 65
                +        S++ L+LS NH   +  + E L  L  L + D  I        N+ 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD--I------SRNTF 399

Query: 66  TPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLL 125
                               P        ++  +LS   +              L +L +
Sbjct: 400 H-----------------PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDV 438

Query: 126 ANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 185
           +NN+L  SF + +     L  L +S N     +P    +  P L+ + +SRN        
Sbjct: 439 SNNNL-DSFSLFLP---RLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDG 491

Query: 186 SFADMKMLERLDISDNQL 203
            F  +  L+++ +  N  
Sbjct: 492 IFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 13/89 (14%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQ-IGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           LT++  + +   +   EI       L+ ++ L +   +L      +  +++ I  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSG 575
           +     +     +L+++   ++   NL+ 
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLAR 210

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (345), Expect = 1e-34
 Identities = 61/408 (14%), Positives = 133/408 (32%), Gaps = 28/408 (6%)

Query: 161 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKI 220
           EI           ++ ++   ++ S       ++ LD+S N L+ +I          L++
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 221 LALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEI 280
           L LS+N L         +L+ L  L L+ N  + E+    S    +  L+ ++N++S  +
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPS----IETLHAANNNIS-RV 114

Query: 281 PRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP--AHIE 338
                     + I + NN +     ++    S ++ LDL  N I     +  +     +E
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 339 QVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE 398
            ++L  N I   ++  +     L TLDLS N+L   +         + ++ L +N +   
Sbjct: 173 HLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 399 IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACL 458
           I   L   + +   DL  N        C         +       ++             
Sbjct: 229 IEKALRFSQNLEHFDLRGNGF-----HCGTLRDFFSKNQRV---QTVAKQTVKKLTGQNE 280

Query: 459 PSRSAPPMGKEETVQFTTKNMSYYYQGRILTS--MSGIDLSCNKLTGEIPTQIGYLSGIH 516
              + P +G             +  +   L     + +    ++    +  +    +   
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQR 339

Query: 517 ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLE 564
            ++         I       +   +L+     L  ++         L+
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (344), Expect = 2e-34
 Identities = 64/462 (13%), Positives = 131/462 (28%), Gaps = 33/462 (7%)

Query: 138 IHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLD 197
             +        V+++         +      + +L+LS N  +    +  A    LE L+
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 198 ISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP 257
           +S N L  E  +       +L+ L L+NN +      +     ++  L    N  I  + 
Sbjct: 65  LSSNVLY-ETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-ISRVS 115

Query: 258 ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG-PIPIEFCQLSALKI 316
            S  +      +YL++N ++       G  S ++ + +  N ++             L+ 
Sbjct: 116 CSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 317 LDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIP 376
           L+L  N I+  +      A ++ + LS NK+   +      +  +  + L  N+L   I 
Sbjct: 174 LNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 377 NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG----HIPSCLVNTAL 432
             +     L +  L  N             K  R+  ++   +      +   C V T  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 433 SGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMS 492
             G +      + +  R            S      E                       
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN----------QARQR 339

Query: 493 GIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG- 551
            ID    +    I            L      L   +        +++            
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399

Query: 552 -KIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYE 592
                +   L  L      Y  +  +       +  + D Y+
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQ 441

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (300), Expect = 8e-29
 Identities = 59/409 (14%), Positives = 114/409 (27%), Gaps = 48/409 (11%)

Query: 17  HLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISL 76
           +    +   ++++   Q   SL    +   +K  D           N       L+ IS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASL--RQSAWNVKELD--------LSGN------PLSQIS- 50

Query: 77  SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRM 136
                       L     L+  +LS   L        LE+ + L  L L NN +      
Sbjct: 51  ---------AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE---- 94

Query: 137 PIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 196
            +    ++ TL  +NN     +         G  ++ L+ N               ++ L
Sbjct: 95  -LLVGPSIETLHAANNNIS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 197 DISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEI 256
           D+  N++       +A    +L+ L L  N +       +     L  L L  NK +  +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNK-LAFM 206

Query: 257 PESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE-GPIPIEFCQLSALK 315
                    +  + L +N L   I + L     LE   +  N    G +   F +   ++
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 316 ILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI 375
            +                       H      E            L   + +     GS 
Sbjct: 266 TVAKQTVKKLTGQNEEECT-VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 376 PNRIDR----LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
             R++       +   +       +  I     + +    ++     L 
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (278), Expect = 5e-26
 Identities = 62/417 (14%), Positives = 121/417 (29%), Gaps = 60/417 (14%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
                 ++++L LS N   QI  +   L   +KL+  +           N L        
Sbjct: 29  LRQSAWNVKELDLSGNPLSQISAAD--LAPFTKLELLNL--------SSNVLY------- 71

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWL--LENNTNLVMLLLANNSLF 131
                                L    L  L+L+    N++  L    ++  L  ANN++ 
Sbjct: 72  ----------ETLDL----ESLST--LRTLDLNN---NYVQELLVGPSIETLHAANNNI- 111

Query: 132 GSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADM 190
              R+     Q    + ++NN     +          +  L+L  N  +  +     A  
Sbjct: 112 --SRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 191 KMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGN 250
             LE L++  N +  ++          LK L LS+N L   +  +  +   +  + L  N
Sbjct: 169 DTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 251 KFIGEIPESLSKCYLLGGLYLSDNHLS-GEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC 309
           K +  I ++L     L    L  N    G +  +      ++ +             E C
Sbjct: 225 K-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 310 QLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIE-------GRLESIIHDSPYLV 362
            +    +           LP+ F    +  +   ++ +         RLE    +     
Sbjct: 284 TV--PTLGHYGAYCC-EDLPAPF-ADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 363 TLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 419
            +D    +    I     R      L      +  ++        E+          
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (270), Expect = 7e-25
 Identities = 54/415 (13%), Positives = 122/415 (29%), Gaps = 55/415 (13%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLT---PKFQ 70
            L     +E L LS+N  ++       L +LS L+T D         + N +        
Sbjct: 53  DLAPFTKLELLNLSSNVLYETL----DLESLSTLRTLDL--------NNNYVQELLVGPS 100

Query: 71  LTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLA 126
           + ++  +      +               KN  L++  ++    +      + +  L L 
Sbjct: 101 IETLHAANNNISRVSCSRGQG-------KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLK 152

Query: 127 NNSLFG-SFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 185
            N +   +F     S   L  L++  NF +  +  ++      L  L+LS N     +  
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGP 208

Query: 186 SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245
            F     +  + + +N+L   I + +     +L+   L  N        + F   N    
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQ 265

Query: 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP 305
            +          ++  +C +    +            +   L AL               
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL--------------- 310

Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
               +     +L    +          + A   ++   K +    ++ +       +TL+
Sbjct: 311 ----KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366

Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
                L   + N      +L+  L      + E+     +   ++L+        
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAV-GQIELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (260), Expect = 1e-23
 Identities = 50/418 (11%), Positives = 122/418 (29%), Gaps = 50/418 (11%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
              + L  L ++  L L+NN+  ++        ++  L            +  N+++   
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQELL----VGPSIETL-----------HAANNNIS--- 112

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
                     +               KN  L++  ++    +      + +  L L  N 
Sbjct: 113 ---------RVSCSRGQG-------KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNE 155

Query: 130 LFG-SFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA 188
           +   +F     S   L  L++  NF +  +  ++      L  L+LS N     +   F 
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 189 DMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLD 248
               +  + + +N+L   I + +     +L+   L  N        + F   N     + 
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVA 268

Query: 249 GNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG----PI 304
                    ++  +C +    +            +   L AL+       + +G     +
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328

Query: 305 PIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVT 363
             E    +  + +D         +            +   K  ++ ++ +       L  
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

Query: 364 LDLSYNRLHGSIPNRIDRLPQLNYL-LLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
                      + +  +    L  L  +   Y +  +  Q  Q   +R  D+  +  +
Sbjct: 389 TLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.4 bits (206), Expect = 5e-17
 Identities = 27/168 (16%), Positives = 64/168 (38%), Gaps = 12/168 (7%)

Query: 253 IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLS 312
           I EI ++ ++        ++D+ L   +     +   ++ + +  N L      +    +
Sbjct: 2   IHEIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
            L++L+LS+N ++       S + +  + L+ N +       +   P + TL  + N + 
Sbjct: 59  KLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 373 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
             +            + LA+N I     +       V+ +DL  N + 
Sbjct: 113 -RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 11/71 (15%), Positives = 26/71 (36%)

Query: 351 LESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVR 410
           +  I  +        ++ + L  ++ +       +  L L+ N +       L    ++ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 411 LIDLSHNNLSG 421
           L++LS N L  
Sbjct: 62  LLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 13/71 (18%), Positives = 26/71 (36%)

Query: 505 IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLE 564
           I       +      ++ ++L   + +   +   ++ LDLS N L       L     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 565 VFKVAYNNLSG 575
           +  ++ N L  
Sbjct: 62  LLNLSSNVLYE 72

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (335), Expect = 4e-34
 Identities = 64/335 (19%), Positives = 130/335 (38%), Gaps = 35/335 (10%)

Query: 95  LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFF 154
              A L   +++        E   ++  L++A   +  +    I    NL  L+++ N  
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQI 78

Query: 155 HGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATG 214
               P+     L  L +L +  N    +  S+  ++  L  L ++++ ++   P      
Sbjct: 79  TDISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP---LAN 130

Query: 215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274
              +  L L  N     + S   N+T L  L +  +K + ++   ++    L  L L+ N
Sbjct: 131 LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN 187

Query: 275 HLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI-----FGTLP 329
            +    P  L +L++L       N +    P+    ++ L  L + NN I        L 
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITDLSPLANLS 243

Query: 330 SCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLL 389
                  +  + +  N+I   + ++  D   L  L++  N++   I   ++ L QLN L 
Sbjct: 244 Q------LTWLEIGTNQISD-INAV-KDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLF 293

Query: 390 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP 424
           L +N +  E    +  L  +  + LS N+++   P
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (323), Expect = 2e-32
 Identities = 68/334 (20%), Positives = 139/334 (41%), Gaps = 32/334 (9%)

Query: 92  QHDLKNADLSHLNLSGQFPNWL-----LENNTNLVMLLLANNSLFGSFRMPIHSHQNLAT 146
           Q +L++  ++ L ++G     +     +E  TNL  L L  N +      P+ +   L  
Sbjct: 40  QEELES--ITKLVVAG---EKVASIQGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTN 92

Query: 147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGE 206
           L +  N       ++    L  L +L L+ +  +   P   A++  +  L++  N    +
Sbjct: 93  LYIGTNKITDISALQ---NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD 147

Query: 207 IPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLL 266
           +     +    L  L ++ + ++        NLT+L  L L+ N+ I +I   L+    L
Sbjct: 148 LSP--LSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQ-IEDI-SPLASLTSL 201

Query: 267 GGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG 326
                  N ++   P  + N++ L  +++ NN +    P+    LS L  L++  N I  
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQI-S 256

Query: 327 TLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLN 386
            + +      ++ +++  N+I     S++++   L +L L+ N+L       I  L  L 
Sbjct: 257 DINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 387 YLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
            L L+ N+I    P  L  L ++   D ++  + 
Sbjct: 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 24/157 (15%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 269 LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTL 328
           L      ++   P    +L+      +   ++   +  E  +L ++  L ++   +  ++
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKV-ASI 59

Query: 329 PSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYL 388
                  ++E ++L+ N+I     S + +   L  L +  N++  +  + +  L  L  L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLREL 115

Query: 389 LLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
            L  + I    P  L  L ++  ++L  N+    +  
Sbjct: 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 5e-12
 Identities = 44/271 (16%), Positives = 93/271 (34%), Gaps = 40/271 (14%)

Query: 314 LKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHG 373
              L      I   +      A   +  L K  +         +   +  L ++  ++  
Sbjct: 2   AATLATLPAPI-NQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA- 57

Query: 374 SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTA-- 431
           SI   I+ L  L YL L  N I    P  L  L ++  + +  N ++    S L N    
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNL 112

Query: 432 ----LSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI 487
               L+  +   ++P +      S+ + A        P+                     
Sbjct: 113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSN------------------- 153

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           +T ++ + ++ +K+    P  I  L+ +++L+L++N +    P   ++L  +       N
Sbjct: 154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 578
            +    P  +  +  L   K+  N ++   P
Sbjct: 210 QITDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 5e-11
 Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 51/225 (22%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
             +  + +L  +  L L+ N        + PL +L+ L  F         ++ N +T   
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQI----EDISPLASLTSLHYFT--------AYVNQIT--- 212

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWL-----LENNTNLVMLL 124
            +T ++                  ++    L+ L +     N +     L N + L  L 
Sbjct: 213 DITPVA------------------NMTR--LNSLKIGN---NKITDLSPLANLSQLTWLE 249

Query: 125 LANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIP 184
           +  N +  S    +     L  L+V +N       +     L  L  L L+ N       
Sbjct: 250 IGTNQI--SDINAVKDLTKLKMLNVGSNQISDISVLN---NLSQLNSLFLNNNQLGNEDM 304

Query: 185 SSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229
                +  L  L +S N +T   P         +     +N  ++
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 9e-08
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           LT +  +++  N+++    + +  LS +++L L++N L          L  + +L LS N
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLS 574
            +    P  L  L+ ++    A   + 
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           L+ ++ +++  N+++      +  L+ +  LN+  N ++    +  +NL Q+ SL L+ N
Sbjct: 242 LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 578
            L  +    +  L  L    ++ N+++   P
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           LTS+       N++T   P  +  ++ +++L + +N +T   P   +NL Q+  L++  N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSG 575
            +       +  L  L++  V  N +S 
Sbjct: 254 QISD--INAVKDLTKLKMLNVGSNQISD 279

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  133 bits (336), Expect = 5e-34
 Identities = 68/330 (20%), Positives = 123/330 (37%), Gaps = 33/330 (10%)

Query: 100 LSHLNLSG----QFPNWLLENNTNLVMLLLANNSL----FGSFRMPIHSHQNLATLDVSN 151
              +        + P  LL++   + +L L +  +      +F         +  L +  
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGF 102

Query: 152 NFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERM 211
           N    ++P  +   +P L  L L RN  +      F +   L  L +S+N L   I +  
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 212 ATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYL 271
                SL+ L LS+N L     S    + +L    +  N        +L+    +  L  
Sbjct: 161 FQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDA 212

Query: 272 SDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSC 331
           S N ++  +         L  +++ +NNL             L  +DLS N +   +   
Sbjct: 213 SHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 332 FSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLL 390
           F     +E++++S N++   L       P L  LDLS+N L   +     +  +L  L L
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 391 AHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
            HN I   + +       ++ + LSHN+  
Sbjct: 326 DHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (326), Expect = 1e-32
 Identities = 67/324 (20%), Positives = 129/324 (39%), Gaps = 24/324 (7%)

Query: 102 HLNLSGQ--FPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIP 159
           H+++  Q  +  +      N  ++   N+++       + S + +  L++++      I 
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EID 85

Query: 160 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLK 219
                Y   +  L +  NA     P  F ++ +L  L +  N L+  +P  +      L 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144

Query: 220 ILALSNN---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 276
            L++SNN    ++   F      T+L  LQL  N+ +  +  SL     L    +S N L
Sbjct: 145 TLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNR-LTHVDLSLIPS--LFHANVSYNLL 198

Query: 277 SGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAH 336
           S      L    A+E +   +N++     +       L IL L +N++        +   
Sbjct: 199 ST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNL-TDTAWLLNYPG 249

Query: 337 IEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK 396
           + +V LS N++E  +         L  L +S NRL  ++      +P L  L L+HN++ 
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

Query: 397 GEIPVQLCQLKEVRLIDLSHNNLS 420
             +     Q   +  + L HN++ 
Sbjct: 309 -HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (286), Expect = 2e-27
 Identities = 74/396 (18%), Positives = 140/396 (35%), Gaps = 60/396 (15%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
             + L + + +   N+   ++P +L  L +  +++  +         +   +        
Sbjct: 40  EDITLNNQKIVTFKNSTMRKLPAAL--LDSFRQVELLN--------LNDLQIE------- 82

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL--- 130
                 ID   F     + H ++   +    +    P  + +N   L +L+L  N L   
Sbjct: 83  -----EIDTYAFA----YAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 131 -FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 189
             G F    H+   L TL +SNN     I  +       L +L LS N     +    + 
Sbjct: 133 PRGIF----HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSL 184

Query: 190 MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDG 249
           +  L   ++S N L+  +         +++ L  S+NS+   +         L  L+L  
Sbjct: 185 IPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSIN-VVRGPVN--VELTILKLQH 235

Query: 250 NKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC 309
           N  + +    L     L  + LS N L   +      +  LE + + NN L   + +   
Sbjct: 236 NN-LTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ 292

Query: 310 QLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDS--PYLVTLDLS 367
            +  LK+LDLS+N +     +      +E ++L  N I       +  S    L  L LS
Sbjct: 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-----VTLKLSTHHTLKNLTLS 347

Query: 368 YNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQL 403
           +N    +  +       +    +       +I  QL
Sbjct: 348 HNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (269), Expect = 3e-25
 Identities = 53/265 (20%), Positives = 104/265 (39%), Gaps = 31/265 (11%)

Query: 165 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALS 224
           Y     D+++     +         +   + +   ++ +  ++P  +      +++L L+
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77

Query: 225 NN---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPES-LSKCYLLGGLYLSDNHLSGEI 280
           +     +  + F+       + +L +  N  I  +P        LL  L L  N LS  +
Sbjct: 78  DLQIEEIDTYAFA---YAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 281 PRWL-GNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI----FGTLPSCFSPA 335
           PR +  N   L  + M NNNLE      F   ++L+ L LS+N +       +PS     
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS----- 187

Query: 336 HIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYI 395
            +   ++S N +     S +     +  LD S+N ++  +   +    +L  L L HN +
Sbjct: 188 -LFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 238

Query: 396 KGEIPVQLCQLKEVRLIDLSHNNLS 420
             +    L     +  +DLS+N L 
Sbjct: 239 T-DTAW-LLNYPGLVEVDLSYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 5/168 (2%)

Query: 256 IPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALK 315
           I  +L    +   +++               L+  + +   N+ +             ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 316 ILDLSNNSIFGTLPSCFSPAH-IEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS 374
           +L+L++  I       F+ AH I+++++  N I      +  + P L  L L  N L  S
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 131

Query: 375 IPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNLS 420
           +P  I    P+L  L +++N ++  I     Q    ++ + LS N L+
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           +  +  + +S N+L   +      +  +  L+LSHN+L   +        ++E+L L +N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKP 601
            +   +       +TL+   +++N+       RA F      + +     C   
Sbjct: 329 SIV-TLKLS--THHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           +   ++ + L  N LT +    +    G+  ++LS+N L   +   F  ++++E L +S 
Sbjct: 224 VNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLS 574
           N L   +      + TL+V  +++N+L 
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           +  ++ + L  N L+  +P  I      +  L++S+NNL      TF     +++L LS 
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLS 574
           N L   +   L  + +L    V+YN LS
Sbjct: 175 NRLT-HVDLSL--IPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 11/87 (12%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
            TS+  + LS N+LT  +   +  +  +   N+S+N L+     T +    +E LD S+N
Sbjct: 164 TTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHN 215

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLS 574
            ++  +   +     L + K+ +NNL+
Sbjct: 216 SIN-VVRGPV--NVELTILKLQHNNLT 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (342), Expect = 9e-34
 Identities = 78/430 (18%), Positives = 148/430 (34%), Gaps = 45/430 (10%)

Query: 167 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN 226
               +L+LS N        SF     L+ LD+S  ++   I +        L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 227 SLQG---HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL-SGEIPR 282
            +Q      FS    L++L +L              +     L  L ++ N + S ++P 
Sbjct: 87  PIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 283 WLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKI----LDLSNNSIFGTLPSCFSPAHIE 338
           +  NL+ LE + + +N ++     +   L  + +    LDLS N +    P  F    + 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 339 QVHLSKNKIEGRL-ESIIHDSPYLVTLDL------SYNRLHGSIPNRIDRLPQLNYLLLA 391
           ++ L  N     + ++ I     L    L      +   L     + ++ L  L      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 392 HNYIKG---EIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCG 448
             Y+     +I      L  V    L    +   +     N               +   
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGW----------QHLELV 312

Query: 449 RASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT--GEIP 506
                     P+     +   + + FT+      +    L S+  +DLS N L+  G   
Sbjct: 313 NCKFG---QFPTLK---LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 507 TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ--LIVLNTLE 564
                 + +  L+LS N +  T+ + F  L+Q+E LD  ++ L  ++      + L  L 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLI 424

Query: 565 VFKVAYNNLS 574
              +++ +  
Sbjct: 425 YLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (324), Expect = 2e-31
 Identities = 80/499 (16%), Positives = 147/499 (29%), Gaps = 45/499 (9%)

Query: 96  KNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFH 155
                  LN   + P+ L     +   L L+ N L         S   L  LD+S     
Sbjct: 10  ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 156 GHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGC 215
             I       L  L  L L+ N        +F+ +  L++L   +  L   +        
Sbjct: 66  -TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHL 123

Query: 216 FSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPESL----SKCYLLGGLY 270
            +LK L +++N +Q     + F NLTNL  L L  NK        L        L   L 
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 271 LSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQLSALKILDLSNNSIFGTLP 329
           LS N ++  I         L  + + NN     +       L+ L++  L          
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF----- 237

Query: 330 SCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS---IPNRIDRLPQLN 386
                        ++  +E   +S +     L   +     L      I +  + L  ++
Sbjct: 238 ------------RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 387 YLLLAHNYIKGEIPVQ-LCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSI 445
              L    I+           + + L++             L     +         + +
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA-FSEV 344

Query: 446 WCGR-ASVYISAC------LPSRSAPPMGKEETVQFTTKNMSYYYQG-RILTSMSGIDLS 497
                  + +S          S+S       + +  +   +         L  +  +D  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404

Query: 498 CNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 556
            + L       +   L  +  L++SH +        F+ L  +E L ++ N       P 
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 557 LIV-LNTLEVFKVAYNNLS 574
           +   L  L    ++   L 
Sbjct: 465 IFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (322), Expect = 4e-31
 Identities = 85/532 (15%), Positives = 167/532 (31%), Gaps = 107/532 (20%)

Query: 98  ADLSHLNLSG----QFPNWLLENNTNLVMLLLANNSL----FGSFRMPIHSHQNLATLDV 149
               +L+LS        ++   +   L +L L+   +     G++     S  +L+TL +
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLIL 83

Query: 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE 209
           + N     + +   + L  L  L                 +K L+ L+++ N +      
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 210 RMATGCFSLKILALSNNSLQG---------------------------HIFSKKFNLTNL 242
              +   +L+ L LS+N +Q                             I    F    L
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 243 MRLQLDGNKFIGEIPE-------SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM 295
            +L L  N     + +        L    L+ G + ++ +L       L  L  L     
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 296 PNNNLEG---PIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLE 352
               L+     I   F  L+ +    L + +I   +         + + L   K   +  
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKFG-QFP 320

Query: 353 SIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYI--KGEIPVQLCQLKEVR 410
           ++   S  L  L  + N+   +       LP L +L L+ N +  KG           ++
Sbjct: 321 TLKLKS--LKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 411 LIDLSHNNLSGHIPSCLVNTA------LSGGHHEAVAPTSIWCGRASVYISACLPSRSAP 464
            +DLS N +   + S  +             + + ++  S++                  
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS---------------- 419

Query: 465 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNN 524
                                  L ++  +D+S              LS +  L ++ N+
Sbjct: 420 -----------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 525 LTGTIPT-TFSNLKQIESLDLSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLS 574
                    F+ L+ +  LDLS   L  ++ P     L++L+V  +A N L 
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (320), Expect = 6e-31
 Identities = 77/448 (17%), Positives = 153/448 (34%), Gaps = 55/448 (12%)

Query: 20  SMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSG- 78
           S + L LS N    +       F+  +L+  D   C        +      L+++ L+G 
Sbjct: 29  STKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 79  ---YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL-FGSF 134
               +  G F         L+       NL+    N+ + +   L  L +A+N +     
Sbjct: 87  PIQSLALGAFSGL----SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 135 RMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGL----MDLNLSRNAFNGSIPSSFADM 190
                +  NL  LD+S+N     I       L  +    + L+LS N  N   P +F ++
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 191 KMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF------NLTNLMR 244
           + L +L + +N  +  + +    G   L++  L     +     +KF       L NL  
Sbjct: 201 R-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 245 LQLDGNK---FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301
            +        ++ +I +  +    +    L    +   +  +  N    + + + N    
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG-WQHLELVNCKFG 317

Query: 302 GPIPIE-------------------FCQLSALKILDLSNNSI-FGTLPSC--FSPAHIEQ 339
               ++                      L +L+ LDLS N + F    S   F    ++ 
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 340 VHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI--DRLPQLNYLLLAHNYIKG 397
           + LS N +   + S       L  LD  ++ L   +        L  L YL ++H + + 
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 398 EIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
                   L  + ++ ++ N+   +   
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (319), Expect = 9e-31
 Identities = 75/426 (17%), Positives = 145/426 (34%), Gaps = 32/426 (7%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
           +   L  +  LIL+ N    + +       LS L+                +     L  
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 74  ISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLL----LANN 128
           ++++   I     P++  +  +L++ DLS   +        L     + +L     L+ N
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 129 SLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSI----- 183
            +    +        L  L + NNF   ++       L GL    L    F         
Sbjct: 188 PM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 184 -PSSFADMKML--ERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG-HIFSKKFNL 239
             S+   +  L  E   ++      +    +     ++   +L + +++    FS  F  
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 240 TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNN 299
            +L  +     +F     +SL +      L  + N           +L +LE + +  N 
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKR------LTFTSNKGGNAFS--EVDLPSLEFLDLSRNG 358

Query: 300 LE--GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAH-IEQVHLSKNKIEGRLE-SII 355
           L   G         ++LK LDLS N +  T+ S F     +E +    + ++   E S+ 
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 356 HDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ-LCQLKEVRLIDL 414
                L+ LD+S+     +     + L  L  L +A N  +         +L+ +  +DL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 415 SHNNLS 420
           S   L 
Sbjct: 478 SQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (317), Expect = 2e-30
 Identities = 81/416 (19%), Positives = 147/416 (35%), Gaps = 38/416 (9%)

Query: 197 DISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIGE 255
              +     +IP+ +     S K L LS N L+ H+ S  F +   L  L L   +    
Sbjct: 13  QCMELNFY-KIPDNLPF---STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 256 IPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALK 315
              +      L  L L+ N +          LS+L+ +     NL          L  LK
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 316 ILDLSNNSI-FGTLPSCFSP-AHIEQVHLSKNKI----EGRLESIIHDSPYLVTLDLSYN 369
            L++++N I    LP  FS   ++E + LS NKI       L  +       ++LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 370 RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP----VQLCQLKEVRLI-----------DL 414
            ++  I     +  +L+ L L +N+    +       L  L+  RL+             
Sbjct: 188 PMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 415 SHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAC----LPSRSAPPMGKEE 470
             + L G     +    L+   +       ++    +V   +     +            
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 471 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLT--GT 528
                       +    L S+  +  + NK      +++  L  +  L+LS N L+  G 
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGC 364

Query: 529 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 584
              +      ++ LDLS+N +   +    + L  LE     ++NL  ++ + + F 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 418

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  121 bits (305), Expect = 5e-29
 Identities = 80/424 (18%), Positives = 137/424 (32%), Gaps = 53/424 (12%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLT------- 66
              +L ++E L LS+N    I  +   L  L ++   +  +    +   N +        
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSL----DLSLNPMNFIQPGAF 197

Query: 67  PKFQLTSISLSGYIDGGTFPKFLY------HQHDLKNADLSHLNLSGQFPNWLLENNTNL 120
            + +L  ++L    D     K           H L   +  +     +F    LE   NL
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 121 VMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFN 180
            +       L       I     L  +   +        V+  +Y  G   L L    F 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 181 GSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG-HIFSKKF-N 238
              P+    +K L+RL  + N+      E       SL+ L LS N L      S+    
Sbjct: 318 -QFPTLK--LKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 239 LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRW--LGNLSALEGIRMP 296
            T+L  L L  N  +  +  +      L  L    ++L  ++  +    +L  L  + + 
Sbjct: 372 TTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDIS 429

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH 356
           + +        F  LS+L++L ++ NS                              I  
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----------------------DIFT 467

Query: 357 DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 416
           +   L  LDLS  +L    P   + L  L  L +A N +K        +L  ++ I L  
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

Query: 417 NNLS 420
           N   
Sbjct: 528 NPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  113 bits (285), Expect = 2e-26
 Identities = 79/386 (20%), Positives = 129/386 (33%), Gaps = 26/386 (6%)

Query: 6   NLLKTSLISLMHL-ISMEKLILSNNHFFQIP------ISLEPLF---NLSKLKTFDGEIC 55
           ++  T L  L  + +    L LS N    I       I L  L    N   L      I 
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 56  AETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLE 115
                  + L         +L    D             ++   L++L+        L  
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLE-KFDKSALEGL--CNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS 175
             TN+    L + ++          +     L++ N  F     ++    L  L  L  +
Sbjct: 280 CLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFT 333

Query: 176 RNAFNGSIPSSFADMKMLERLDISDNQLTG-EIPERMATGCFSLKILALSNNSLQGHIFS 234
            N   G    S  D+  LE LD+S N L+      +   G  SLK L LS N +   + S
Sbjct: 334 SN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS 390

Query: 235 KKFNLTNLMRLQLDGNKFIGEIPES-LSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGI 293
               L  L  L    +        S       L  L +S  H           LS+LE +
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 294 RMPNNNLEGPIPIE-FCQLSALKILDLSNNSIFGTLPSCFSPAH-IEQVHLSKNKIEGRL 351
           +M  N+ +     + F +L  L  LDLS   +    P+ F+    ++ ++++ N+++   
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 352 ESIIHDSPYLVTLDLSYNRLHGSIPN 377
           + I      L  + L  N    S P 
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 49/292 (16%), Positives = 94/292 (32%), Gaps = 27/292 (9%)

Query: 2   SLTINLLKTSLISLMH----LISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAE 57
              +  L   L  ++     L ++    L +    ++       F    L+  + +    
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQF 319

Query: 58  TESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG------QFPN 111
                 SL        ++ +    GG     +    DL +  L  L+LS          +
Sbjct: 320 PTLKLKSLK------RLTFT-SNKGGNAFSEV----DLPS--LEFLDLSRNGLSFKGCCS 366

Query: 112 WLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMD 171
                 T+L  L L+ N +  +        + L  LD  ++         +   L  L+ 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH 231
           L++S      +    F  +  LE L ++ N         + T   +L  L LS   L+  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-Q 484

Query: 232 IFSKKF-NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPR 282
           +    F +L++L  L +  N+          +   L  ++L  N      PR
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 15/146 (10%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
              +  +DLS  ++          LS +  L L+ N +       FS L  ++ L     
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA---------------QFSTFEEDSYE 592
            L       +  L TL+   VA+N +                       +  +       
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 593 GNPFLCGKPLSKSCNHNGLTTVTPEA 618
               +    LS   + N +  + P A
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGA 196

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           L +++ +DLS  +L    PT    LS +  LN++ N L       F  L  ++ + L  N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 548 LLH 550
              
Sbjct: 529 PWD 531

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  128 bits (325), Expect = 5e-33
 Identities = 64/351 (18%), Positives = 112/351 (31%), Gaps = 48/351 (13%)

Query: 88  FLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATL 147
             +H    +N           + + L    +       A+ + + S     +S+ N    
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSN-NPQIE 61

Query: 148 DVSNNFFHGHIPVEIGT-YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGE 206
             +           +     PG + L L         P     +  L+ + I    L  E
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 207 IPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLL 266
           +P+ M      L+ L L+ N L+  + +   +L  L  L +     + E+PE L+     
Sbjct: 119 LPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 267 GG---------LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKIL 317
           G          L L    +   +P  + NL  L+ +++ N+ L   +      L  L+ L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234

Query: 318 DLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLS-YNRLHGSIP 376
           DL   +     P  F                G           L  L L   + L  ++P
Sbjct: 235 DLRGCTALRNYPPIF----------------GGRAP-------LKRLILKDCSNLL-TLP 270

Query: 377 NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
             I RL QL  L L        +P  + QL    +I +   +L   +    
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  125 bits (316), Expect = 8e-32
 Identities = 58/346 (16%), Positives = 109/346 (31%), Gaps = 45/346 (13%)

Query: 71  LTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL 130
             ++   G      +   L       NAD +  + + +  N       N  +      +L
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRAL 68

Query: 131 FGSFRMP-IHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 189
             +  +    +      L++ +       P +    L  L  + +        +P +   
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 190 MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSL---------QGHIFSKKFNLT 240
              LE L ++ N L   +P  +A+    L+ L++                    +   L 
Sbjct: 126 FAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 241 NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNL 300
           NL  L+L+    I  +P S++    L  L + ++ LS  +   + +L  LE + +     
Sbjct: 184 NLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 301 EGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPY 360
               P  F   + LK L L + S   TLP                    RL         
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI----------------HRLTQ------- 278

Query: 361 LVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL 406
           L  LDL        +P+ I +LP    +L+  +        +    
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (276), Expect = 1e-26
 Identities = 37/282 (13%), Positives = 83/282 (29%), Gaps = 33/282 (11%)

Query: 165 YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALS 224
           +  G  +L    +          +  +     D +                 + +I   +
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-----NPQIETRT 64

Query: 225 NNSLQGHIFS-KKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRW 283
             +L+      +       + L+L     + + P+   +   L  + +    L  E+P  
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 284 LGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHI------ 337
           +   + LE + +  N L   +P     L+ L+ L +        LP   +          
Sbjct: 123 MQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 338 ----EQVHLSKNKIE------GRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNY 387
               + + L    I         L++       L +L +  + L  ++   I  LP+L  
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQN-------LKSLKIRNSPLS-ALGPAIHHLPKLEE 233

Query: 388 LLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
           L L         P        ++ + L   +    +P  +  
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 6e-25
 Identities = 50/344 (14%), Positives = 102/344 (29%), Gaps = 60/344 (17%)

Query: 238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297
           + +    L   G+  +    + LS+         +  H +        N +  +      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 298 NNLEG-PIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH 356
             L+     +E         L+L +  +    P                    RL     
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPL-PQFPDQA----------------FRLSH--- 105

Query: 357 DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 416
               L  + +    L   +P+ + +   L  L LA N ++  +P  +  L  +R + +  
Sbjct: 106 ----LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 417 NNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTT 476
                 +P  L +T  SG H   V   S+      +     LP+     +          
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI---RSLPAS----IAN-------- 204

Query: 477 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNL 536
                      L ++  + +  + L+  +   I +L  +  L+L         P  F   
Sbjct: 205 -----------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252

Query: 537 KQIESLDLS-YNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
             ++ L L   + L   +P  +  L  LE   +       ++P 
Sbjct: 253 APLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 47/294 (15%), Positives = 83/294 (28%), Gaps = 46/294 (15%)

Query: 2   SLTINLLKT--SLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETE 59
           + T   LK    L+          L L +    Q P   +  F LS L+           
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMT-------- 110

Query: 60  SHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTN 119
                L                    P  +     L+   L+   L    P  +  +   
Sbjct: 111 IDAAGLM-----------------ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNR 151

Query: 120 LVMLLLANNSLFGSF---------RMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLM 170
           L  L +                          NL +L +        +P  I   L  L 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLK 209

Query: 171 DLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG 230
            L +  +  + ++  +   +  LE LD+         P     G   LK L L + S   
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLL 267

Query: 231 HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWL 284
            +      LT L +L L G   +  +P  +++      + +  + L  ++ +  
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 488 LTSMSGIDLS-CNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           L  +  +DL  C  L    P   G  + +  L L   +   T+P     L Q+E LDL  
Sbjct: 228 LPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR 580
            +   ++P  +  L    +  V   +L  ++   
Sbjct: 287 CVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQH 319

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  129 bits (326), Expect = 4e-32
 Identities = 63/338 (18%), Positives = 124/338 (36%), Gaps = 23/338 (6%)

Query: 92  QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSN 151
               +             P  +    T   +L L  N +    +    S  +L  L+++ 
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 152 NFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISDNQLTGEIPER 210
           N     +       L  L  L L  N     IP   F  +  L +LDIS+N++   + + 
Sbjct: 66  NIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDY 122

Query: 211 MATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP-ESLSKCYLL 266
           M    ++LK L + +N    +    FS    L +L +L L+    +  IP E+LS  + L
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRAFS---GLNSLEQLTLEKCN-LTSIPTEALSHLHGL 178

Query: 267 GGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG 326
             L L   +++         L  L+ + + +      +         L  L +++ ++  
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-T 237

Query: 327 TLPSC-FSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-DRLP 383
            +P        ++  ++LS N I     S++H+   L  + L   +L   +       L 
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLN 296

Query: 384 QLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNLS 420
            L  L ++ N +   +   +   +  +  + L  N L+
Sbjct: 297 YLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (261), Expect = 8e-24
 Identities = 67/341 (19%), Positives = 117/341 (34%), Gaps = 66/341 (19%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
                  +E+L L+ N    +        NL  L+T             N L        
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGA--FNNLFNLRTLG--------LRSNRLK------- 93

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG----QFPNWLLENNTNLVMLLLANNS 129
                 I  G F         L N  L+ L++S        +++ ++  NL  L + +N 
Sbjct: 94  -----LIPLGVF-------TGLSN--LTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFA 188
           L                + +S+  F G         L  L  L L +     SIP+ + +
Sbjct: 140 L----------------VYISHRAFSG---------LNSLEQLTLEKCNLT-SIPTEALS 173

Query: 189 DMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLD 248
            +  L  L +    +   I +      + LK+L +S+      +        NL  L + 
Sbjct: 174 HLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

Query: 249 GNKFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE 307
               +  +P  ++     L  L LS N +S      L  L  L+ I++    L    P  
Sbjct: 233 HCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291

Query: 308 FCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKI 347
           F  L+ L++L++S N +     S F    ++E + L  N +
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 33/233 (14%)

Query: 196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIG 254
           +     +    +PE + T     ++L L  N ++  +   +F +  +L  L+L+ N  + 
Sbjct: 16  VLCHRKRFV-AVPEGIPT---ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI-VS 69

Query: 255 EIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA 313
            +   + +  + L  L L  N L          LS L  + +  N +   +   F  L  
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 314 LKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHG 373
           LK L++ +N +       FS                 L S       L  L L    L  
Sbjct: 130 LKSLEVGDNDLVYISHRAFSG----------------LNS-------LEQLTLEKCNLT- 165

Query: 374 SIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
           SIP      L  L  L L H  I         +L  ++++++SH      +  
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.8 bits (197), Expect = 7e-16
 Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 35/243 (14%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
               L +++ L + +N    I         L+ L+               +LT       
Sbjct: 123 MFQDLYNLKSLEVGDNDLVYISHRA--FSGLNSLEQLT--------LEKCNLT------- 165

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS 133
                 I          H H L    L HLN++    ++  +    L +L +++     +
Sbjct: 166 -----SIPTEAL----SHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 134 FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 193
                    NL +L +++      +P     +L  L  LNLS N  +    S   ++  L
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 194 ERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGN 250
           + + +   QL   +      G   L++L +S N   +L+  +F    ++ NL  L LD N
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH---SVGNLETLILDSN 330

Query: 251 KFI 253
              
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           L S+  + L    LT  IPT+   +L G+  L L H N+      +F  L +++ L++S+
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 581
                 + P  +    L    + + NL+  +P  A
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           L ++  + L  N+L   IP  +   LS +  L++S N +   +   F +L  ++SL++  
Sbjct: 79  LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 547 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
           N L   I  +    LN+LE   +   NL+  IP  A
Sbjct: 138 NDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEA 171

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           I T    +DL  N++      +      +  L L+ N ++   P  F+NL  + +L L  
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 547 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
           N L   IP  +   L+ L    ++ N +   + D  
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYM 123

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 29/138 (21%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           L  +  +++S       +     Y   + +L+++H NLT        +L  +  L+LSYN
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 548 LLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA---------------QFSTFEEDSY 591
            +   I   ++  L  L+  ++    L+  +   A               Q +T EE  +
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 592 E-----------GNPFLC 598
                        NP  C
Sbjct: 317 HSVGNLETLILDSNPLAC 334

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  130 bits (329), Expect = 5e-32
 Identities = 68/330 (20%), Positives = 123/330 (37%), Gaps = 33/330 (10%)

Query: 100 LSHLNLSG----QFPNWLLENNTNLVMLLLANNSL----FGSFRMPIHSHQNLATLDVSN 151
              +        + P  LL++   + +L L +  +      +F         +  L +  
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGF 108

Query: 152 NFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERM 211
           N    ++P  +   +P L  L L RN  +      F +   L  L +S+N L   I +  
Sbjct: 109 NAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166

Query: 212 ATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYL 271
                SL+ L LS+N L     S    + +L    +  N        +L+    +  L  
Sbjct: 167 FQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDA 218

Query: 272 SDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSC 331
           S N ++  +         L  +++ +NNL             L  +DLS N +   +   
Sbjct: 219 SHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHP 273

Query: 332 FSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLL 390
           F     +E++++S N++   L       P L  LDLS+N L   +     +  +L  L L
Sbjct: 274 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 391 AHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
            HN I   + +       ++ + LSHN+  
Sbjct: 332 DHNSIV-TLKLS--THHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (316), Expect = 2e-30
 Identities = 61/283 (21%), Positives = 111/283 (39%), Gaps = 23/283 (8%)

Query: 142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN 201
            N   +   N+     +P  +      +  LNL+          +FA    +++L +  N
Sbjct: 51  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 202 QLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE 258
            +   +P  +      L +L L  N   SL   IF    N   L  L +  N  +  I +
Sbjct: 110 AIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH---NTPKLTTLSMSNNN-LERIED 164

Query: 259 S-LSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKIL 317
                   L  L LS N L+  +   L  + +L    +  N L            A++ L
Sbjct: 165 DTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEEL 216

Query: 318 DLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPN 377
           D S+NSI            +  + L  N +     + + + P LV +DLSYN L   + +
Sbjct: 217 DASHNSINVVRGPVNV--ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 272

Query: 378 RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
              ++ +L  L +++N +   + +    +  ++++DLSHN+L 
Sbjct: 273 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (255), Expect = 8e-23
 Identities = 67/396 (16%), Positives = 124/396 (31%), Gaps = 84/396 (21%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
            L     +E L L++    +I            ++             +N++        
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLY--------MGFNAIR------- 112

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG----QFPNWLLENNTNLVMLLLANNS 129
                Y+    F        ++    L+ L L        P  +  N   L  L ++NN+
Sbjct: 113 -----YLPPHVF-------QNVPL--LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 189
           L                           I  +       L +L LS N     +    + 
Sbjct: 159 L-------------------------ERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSL 190

Query: 190 MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDG 249
           +  L   ++S N L+  +         +++ L  S+NS+   +         L  L+L  
Sbjct: 191 IPSLFHANVSYNLLS-TLAI-----PIAVEELDASHNSIN-VVRGPVN--VELTILKLQH 241

Query: 250 NKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC 309
           N  + +    L     L  + LS N L   +      +  LE + + NN L   + +   
Sbjct: 242 NN-LTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ 298

Query: 310 QLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDS--PYLVTLDLS 367
            +  LK+LDLS+N +     +      +E ++L  N I       +  S    L  L LS
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-----VTLKLSTHHTLKNLTLS 353

Query: 368 YNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQL 403
           +N    +  +       +    +       +I  QL
Sbjct: 354 HNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQL 387

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.1 bits (205), Expect = 1e-16
 Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 55/342 (16%)

Query: 237 FNLTNLMRLQLDGNKFIGEIPESLSKCYL--LGGLYLSDNHLSGEIPRWLGNLSALEGIR 294
                   + +D      ++        L     +   ++ +       L +   +E + 
Sbjct: 24  QYDCVFYDVHIDMQTQ--DVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLES 353
           + +  +E      F     ++ L +  N+I    P  F     +  + L +N +      
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 354 IIHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 412
           I H++P L TL +S N L   I +        L  L L+ N +   + + L  +  +   
Sbjct: 142 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHA 197

Query: 413 DLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETV 472
           ++S  NL   +   +    L   H                                    
Sbjct: 198 NVS-YNLLSTLAIPIAVEELDASH------------------------------------ 220

Query: 473 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTT 532
                N     +G +   ++ + L  N LT +    +    G+  ++LS+N L   +   
Sbjct: 221 -----NSINVVRGPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHP 273

Query: 533 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574
           F  ++++E L +S N L   +      + TL+V  +++N+L 
Sbjct: 274 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.9 bits (176), Expect = 3e-13
 Identities = 67/388 (17%), Positives = 121/388 (31%), Gaps = 58/388 (14%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
           +     S++ L LS+N    + +SL  + +L         +        ++L     +  
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLL--------STLAIPIAVEE 215

Query: 74  ISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
           +  S      + G    +       L    L H NL+       L N   LV + L+ N 
Sbjct: 216 LDASHNSINVVRGPVNVE-------LTILKLQHNNLT-DTAW--LLNYPGLVEVDLSYNE 265

Query: 130 L----FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 185
           L    +  F       Q L  L +SNN     + +     +P L  L+LS N     +  
Sbjct: 266 LEKIMYHPFV----KMQRLERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVER 318

Query: 186 SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245
           +      LE L +  N +   +     +   +LK L LS+N       S +    N+ R 
Sbjct: 319 NQPQFDRLENLYLDHNSIV-TLKL---STHHTLKNLTLSHNDWDC--NSLRALFRNVARP 372

Query: 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP 305
            +D         +     Y L             + R L  ++         + +E    
Sbjct: 373 AVDDA------DQHCKIDYQLEHGLCCKESDKPYLDRLLQYIA-------LTSVVEKVQR 419

Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLES----IIHDSPYL 361
            +    +   I  + + S + T          EQ+    N++   ++      I     L
Sbjct: 420 AQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLL 479

Query: 362 VTLDLSYNRLHGSIPNRIDRLPQLNYLL 389
             L    +          D L + +  L
Sbjct: 480 QGLHAEIDTNLRRYRLPKDGLARSSDNL 507

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           +  +  + +S N+L   +      +  +  L+LSHN+L   +        ++E+L L +N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLS 603
            +   +       +TL+   +++N+       RA F      + +     C     
Sbjct: 335 SIV-TLKLS--THHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCKIDYQ 386

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (317), Expect = 5e-32
 Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 29/268 (10%)

Query: 161 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKI 220
           EI           ++ ++   ++ S       ++ LD+S N L+ +I          L++
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 221 LALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEI 280
           L LS+N L         +L+ L  L L+ N  + E+    S    +  L+ ++N++S  +
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPS----IETLHAANNNIS-RV 114

Query: 281 PRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI--------FGTLPSCF 332
                     + I + NN +     ++    S ++ LDL  N I          +  +  
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-- 170

Query: 333 SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAH 392
               +E ++L  N I   ++  +     L TLDLS N+L   +         + ++ L +
Sbjct: 171 ----LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 393 NYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
           N +   I   L   + +   DL  N   
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (301), Expect = 6e-30
 Identities = 49/309 (15%), Positives = 105/309 (33%), Gaps = 41/309 (13%)

Query: 113 LLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDL 172
           + +N     +  + ++SL                               +      + +L
Sbjct: 5   IKQNGNRYKIEKVTDSSL-------------------------KQALASLRQSAWNVKEL 39

Query: 173 NLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHI 232
           +LS N  +    +  A    LE L++S N L  E  +       +L+ L L+NN +    
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYV---- 92

Query: 233 FSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEG 292
             +     ++  L    N  I  +  S  +      +YL++N ++       G  S ++ 
Sbjct: 93  -QELLVGPSIETLHAANNN-ISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 293 IRMPNNNLEG-PIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL 351
           + +  N ++             L+ L+L  N I+  +      A ++ + LS NK+   +
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FM 206

Query: 352 ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRL 411
                 +  +  + L  N+L   I   +     L +  L  N       ++    K  R+
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRV 264

Query: 412 IDLSHNNLS 420
             ++   + 
Sbjct: 265 QTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (259), Expect = 2e-24
 Identities = 49/308 (15%), Positives = 95/308 (30%), Gaps = 43/308 (13%)

Query: 17  HLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISL 76
           +    +   ++++   Q   SL    +   +K  D           N       L+ IS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASL--RQSAWNVKELD--------LSGN------PLSQIS- 50

Query: 77  SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRM 136
                       L     L+  +LS   L        LE+ + L  L L NN +      
Sbjct: 51  ---------AADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV-----Q 93

Query: 137 PIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 196
            +    ++ TL  +NN     +         G  ++ L+ N               ++ L
Sbjct: 94  ELLVGPSIETLHAANNNIS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 197 DISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEI 256
           D+  N++       +A    +L+ L L  N +       +     L  L L  NK +  +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNK-LAFM 206

Query: 257 PESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKI 316
                    +  + L +N L   I + L     LE   +  N       +        ++
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRV 264

Query: 317 LDLSNNSI 324
             ++  ++
Sbjct: 265 QTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
                   ++ + L   + +       +  L+LS N L+       +   ++E L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLS 574
           +L+      L  L+TL    +  N + 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
              +  +DLS NKL   +  +    +G+  ++L +N L   I       + +E  DL  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGN 594
             H     +        V  VA   +        +  T     + G 
Sbjct: 248 GFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTG-TIPTTFSNLKQIESLDLS 545
                  I L+ NK+T       G  S +  L+L  N +         ++   +E L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 546 YNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574
           YN ++  +    +V   L+   ++ N L+
Sbjct: 178 YNFIY-DVKG-QVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
             S+  +  + N ++  +        G   + L++N +T           +++ LDL  N
Sbjct: 98  GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 548 LLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFS 584
            +      +L    +TLE   + YN +   +  +  F+
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFA 191

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 351 LESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVR 410
           +  I  +        ++ + L  ++ +       +  L L+ N +       L    ++ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 411 LIDLSHNNLSGHIPS 425
           L++LS N L      
Sbjct: 62  LLNLSSNVLY-ETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 13/70 (18%), Positives = 26/70 (37%)

Query: 505 IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLE 564
           I       +      ++ ++L   + +   +   ++ LDLS N L       L     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 565 VFKVAYNNLS 574
           +  ++ N L 
Sbjct: 62  LLNLSSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 12/98 (12%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           L+++  +DL+ N +      ++     I  L+ ++NN++    +     K   ++ L+ N
Sbjct: 79  LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANN 130

Query: 548 LLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFS 584
            +   +        + ++   +  N +   +      +
Sbjct: 131 KIT-MLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  121 bits (305), Expect = 2e-29
 Identities = 88/546 (16%), Positives = 178/546 (32%), Gaps = 115/546 (21%)

Query: 18  LISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLS 77
              +++ +  +++  ++P+      N+     +         +       + ++    L 
Sbjct: 10  NTFLQEPLRHSSNLTEMPVE---AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 78  GYIDGG------------TFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLL 125
             +D              + P+   H   L++   S  +L+ + P  L ++  +L++   
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPE-LPQSLKSLLVDNN 121

Query: 126 ANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 185
              +L             L  L VSNN     +P E+      L  +++  N+    +P 
Sbjct: 122 NLKALSDLP-------PLLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLK-KLPD 170

Query: 186 SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245
                  LE +   +NQL  E+PE        L  +   NNSL+  +        +L  +
Sbjct: 171 LPPS---LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK-KLPD---LPLSLESI 220

Query: 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP 305
               N    E    L     L  +Y  +N L   +P    +L AL    + +N L   +P
Sbjct: 221 VAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-LP 273

Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
                L+ L + +   + +    P+      +  ++ S N+I     S+    P L  L+
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPN------LYYLNASSNEI----RSLCDLPPSLEELN 323

Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
           +S N+L   +P      P+L  L+ + N++  E+P     LK+   + + +N L    P 
Sbjct: 324 VSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPD 374

Query: 426 CLVN-TALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQ 484
              +   L    H A  P                                          
Sbjct: 375 IPESVEDLRMNSHLAEVPELP--------------------------------------- 395

Query: 485 GRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDL 544
                ++  + +  N L  E P     +     L ++   +            ++E    
Sbjct: 396 ----QNLKQLHVETNPLR-EFPDIPESVE---DLRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 545 SYNLLH 550
            ++  H
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  117 bits (294), Expect = 5e-28
 Identities = 86/467 (18%), Positives = 164/467 (35%), Gaps = 85/467 (18%)

Query: 116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS 175
           +NT L   L  +++L     +   + ++      + + +  + P   G     +    L 
Sbjct: 9   SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLR 66

Query: 176 RNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSK 235
                               L++++  L+  +PE        L+ L  S NSL   +   
Sbjct: 67  DCLDRQ-----------AHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL 109

Query: 236 KFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM 295
             +L +L+    +    + ++P  L        L +S+N L  ++P  L N S L+ I +
Sbjct: 110 PQSLKSLLVDNNNLKA-LSDLPPLLEY------LGVSNNQLE-KLPE-LQNSSFLKIIDV 160

Query: 296 PNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESII 355
            NN+L+  +P       +L+ +   NN +   LP   +   +  ++   N     L+ + 
Sbjct: 161 DNNSLKK-LP---DLPPSLEFIAAGNNQL-EELPELQNLPFLTAIYADNNS----LKKLP 211

Query: 356 HDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLS 415
                L ++    N L       +  LP L  +   +N +K  +P     L+ + + D  
Sbjct: 212 DLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNY 268

Query: 416 HNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFT 475
             +L   +P  L    +S                    +S   P+               
Sbjct: 269 LTDLP-ELPQSLTFLDVSENIFSG--------------LSELPPN-------------LY 300

Query: 476 TKNMSYYYQGRI---LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTT 532
             N S      +     S+  +++S NKL  E+P     L     L  S N+L   +P  
Sbjct: 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPEL 355

Query: 533 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
             NLK    L + YN L  + P     +  L +     N+   ++P+
Sbjct: 356 PQNLK---QLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPE 393

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.0 bits (198), Expect = 5e-16
 Identities = 65/322 (20%), Positives = 109/322 (33%), Gaps = 62/322 (19%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLT--P 67
             L  L +L  +  +   NN   ++P       +L  +            +  N L   P
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESI-----------VAGNNILEELP 231

Query: 68  KF----QLTSISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVM 122
           +      LT+I      +   T P        L+  ++    L+   P  L ++ T L +
Sbjct: 232 ELQNLPFLTTIYADNNLL--KTLPDLPPS---LEALNVRDNYLT-DLPE-LPQSLTFLDV 284

Query: 123 LLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS 182
                + L            NL  L+ S+N         +    P L +LN+S N     
Sbjct: 285 SENIFSGLSELP-------PNLYYLNASSNEIR-----SLCDLPPSLEELNVSNNKLI-E 331

Query: 183 IPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNL 242
           +P+       LERL  S N L  E+PE       +LK L +  N L+        ++ +L
Sbjct: 332 LPAL---PPRLERLIASFNHLA-EVPELPQ----NLKQLHVEYNPLR-EFPDIPESVEDL 382

Query: 243 MRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG 302
                  N  + E+PE       L  L++  N L  E P    ++  L   RM +  +  
Sbjct: 383 -----RMNSHLAEVPELPQN---LKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVD 430

Query: 303 PIPIEFCQLSALKILDLSNNSI 324
           P          L+     ++  
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.6 bits (189), Expect = 7e-15
 Identities = 52/294 (17%), Positives = 99/294 (33%), Gaps = 70/294 (23%)

Query: 281 PRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQV 340
           PR + N    E +R  ++NL   +P+E   + +      + +      P    P + EQ 
Sbjct: 5   PRNVSNTFLQEPLRH-SSNLT-EMPVEAENVKSKTEYYNAWSEWERNAP----PGNGEQR 58

Query: 341 HLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 400
            ++ +++   L+           L+L+   L  S+P      P L  L+ + N +  E+P
Sbjct: 59  EMAVSRLRDCLD------RQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELP 107

Query: 401 VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS 460
                LK + + + +   LS  +P  L    +S    E +                    
Sbjct: 108 ELPQSLKSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKL-------------------- 146

Query: 461 RSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL 520
              P +                      + +  ID+  N L  ++P     L     +  
Sbjct: 147 ---PELQN-------------------SSFLKIIDVDNNSLK-KLPDLPPSLE---FIAA 180

Query: 521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574
            +N L   +P    NL  + ++    N L  K+P   + L ++       N L 
Sbjct: 181 GNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 4e-13
 Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 38/205 (18%)

Query: 237 FNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMP 296
            + T L       +  + E+P            Y + +      P   G    +   R+ 
Sbjct: 8   VSNTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIE------GR 350
           +           C       L+L+N  +  +LP    P H+E +  S N +         
Sbjct: 67  D-----------CLDRQAHELELNNLGL-SSLPE--LPPHLESLVASCNSLTELPELPQS 112

Query: 351 LESIIHDS----------PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 400
           L+S++ D+          P L  L +S N+L   +P  +     L  + + +N +K ++P
Sbjct: 113 LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLP 169

Query: 401 VQLCQLKEVRLIDLSHNNLSGHIPS 425
                L+    I   +N L   +P 
Sbjct: 170 DLPPSLEF---IAAGNNQLE-ELPE 190

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 46/269 (17%), Positives = 84/269 (31%), Gaps = 44/269 (16%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
             L  L +L  +  +   NN    +P   +   +L  L   D  +          L    
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLP---DLPPSLEALNVRDNYL--------TDLPELP 276

Query: 70  -QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANN 128
             LT + +S         +   +        L +LN S      L +   +L  L ++NN
Sbjct: 277 QSLTFLDVS-ENIFSGLSELPPN--------LYYLNASSNEIRSLCDLPPSLEELNVSNN 327

Query: 129 SLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA 188
            L     +P      L  L  S N     +P         L  L++  N      P    
Sbjct: 328 KLI---ELP-ALPPRLERLIASFNHLA-EVPELPQN----LKQLHVEYNPLR-EFPDIPE 377

Query: 189 DMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLD 248
            ++ L      ++ L  E+PE       +LK L +  N L+        ++ +L   +++
Sbjct: 378 SVEDLR----MNSHLA-EVPELPQ----NLKQLHVETNPLR-EFPDIPESVEDL---RMN 424

Query: 249 GNKFIGEIPESLSKCYLLGGLYLSDNHLS 277
             + +     +      L       +H  
Sbjct: 425 SERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 35/223 (15%), Positives = 62/223 (27%), Gaps = 53/223 (23%)

Query: 375 IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSG 434
           I  R      L   L   + +  E+PV+   +K       + +    + P          
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE-- 59

Query: 435 GHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI---LTSM 491
                          A   +  CL              Q     ++      +      +
Sbjct: 60  --------------MAVSRLRDCLDR------------QAHELELNNLGLSSLPELPPHL 93

Query: 492 SGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT---------------TFSNL 536
             +  SCN LT E+P     L  +   N +   L+   P                   N 
Sbjct: 94  ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152

Query: 537 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
             ++ +D+  N L  K+P       +LE      N L  ++P+
Sbjct: 153 SFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE-ELPE 190

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (303), Expect = 1e-28
 Identities = 64/304 (21%), Positives = 106/304 (34%), Gaps = 45/304 (14%)

Query: 117 NTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSR 176
           N    +L +  + L     +P     ++ TL + +N     +P         L  L +S 
Sbjct: 39  NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 177 NAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKK 236
           N    S+P     +  L         L              L  L +  N L        
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLTSLPVL-- 139

Query: 237 FNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMP 296
                L  L +  N+ +  +P   S+   L  L+  +N L+  +P     L  L    + 
Sbjct: 140 --PPGLQELSVSDNQ-LASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQEL---SVS 189

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH 356
           +N L   +P    +L  L   +    S    LP+   P+ ++++ +S N    RL S+  
Sbjct: 190 DNQLAS-LPTLPSELYKLWAYNNRLTS----LPA--LPSGLKELIVSGN----RLTSLPV 238

Query: 357 DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 416
               L  L +S NRL  S+P        L  L +  N +   +P  L  L     ++L  
Sbjct: 239 LPSELKELMVSGNRL-TSLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 417 NNLS 420
           N LS
Sbjct: 294 NPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (260), Expect = 2e-23
 Identities = 62/323 (19%), Positives = 109/323 (33%), Gaps = 41/323 (12%)

Query: 98  ADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGH 157
           A ++ L +       L      L  L ++ N L  S  +       L+            
Sbjct: 61  AHITTLVIPDNNLTSLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLT----- 114

Query: 158 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFS 217
               +     GL  L +  N    S+P        L+ L +SDNQL   +P   +     
Sbjct: 115 ---HLPALPSGLCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQLA-SLPALPS----E 162

Query: 218 LKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS 277
           L  L   NN L   +       + L  L +  N+ +  +P   S+   L  L+  +N L+
Sbjct: 163 LCKLWAYNNQLT-SLPM---LPSGLQELSVSDNQ-LASLPTLPSE---LYKLWAYNNRLT 214

Query: 278 GEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHI 337
             +P     L  L    +  N L   +P+     S LK L +S N +  +LP    P+ +
Sbjct: 215 -SLPALPSGLKELI---VSGNRLTS-LPVL---PSELKELMVSGNRL-TSLPM--LPSGL 263

Query: 338 EQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYL---LLAHNY 394
             + + +N++  RL   +       T++L  N L       +  +         ++  + 
Sbjct: 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322

Query: 395 IKGEIPVQLCQLKEVRLIDLSHN 417
                P +   L       L   
Sbjct: 323 AGASAPRETRALHLAAADWLVPA 345

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  102 bits (256), Expect = 6e-23
 Identities = 68/369 (18%), Positives = 108/369 (29%), Gaps = 71/369 (19%)

Query: 20  SMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79
            +  L++ +N+   +P        L  L           E   N LT             
Sbjct: 62  HITTLVIPDNNLTSLPALPP---ELRTL-----------EVSGNQLT------------- 94

Query: 80  IDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIH 139
               + P        L    LS  +        L    + L  L +  N L     +P  
Sbjct: 95  ----SLPVLPPG---LLE--LSIFSNPL---THLPALPSGLCKLWIFGNQL---TSLP-V 138

Query: 140 SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDIS 199
               L  L VS+N     +P         L  L    N    S+P        L+ L +S
Sbjct: 139 LPPGLQELSVSDNQL-ASLPALPSE----LCKLWAYNNQLT-SLPMLP---SGLQELSVS 189

Query: 200 DNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPES 259
           DNQL   +P   +     L  L   NN L     S     + L  L + GN+ +  +P  
Sbjct: 190 DNQLA-SLPTLPS----ELYKLWAYNNRLT----SLPALPSGLKELIVSGNR-LTSLPVL 239

Query: 260 LSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDL 319
            S+   L  L +S N L+  +P     L +L    +  N L   +P     LS+   ++L
Sbjct: 240 PSE---LKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLTR-LPESLIHLSSETTVNL 291

Query: 320 SNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI 379
             N +                  S   I   +               + + L  +     
Sbjct: 292 EGNPL-SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350

Query: 380 DRLPQLNYL 388
               + +  
Sbjct: 351 APADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 69/342 (20%), Positives = 122/342 (35%), Gaps = 63/342 (18%)

Query: 22  EKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF-QLTSISLSG-Y 79
             L +  +    +P  L    +++ L   D  +         SL     +L ++ +SG  
Sbjct: 43  AVLNVGESGLTTLPDCLPA--HITTLVIPDNNL--------TSLPALPPELRTLEVSGNQ 92

Query: 80  IDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIH 139
           +   + P        L    LS  +        L    + L  L +  N L     +P  
Sbjct: 93  LT--SLPVLPPG---LLE--LSIFSNPL---THLPALPSGLCKLWIFGNQLT---SLP-V 138

Query: 140 SHQNLATLDVSNNFFHGHIPVEIG------------TYLP----GLMDLNLSRNAFNGSI 183
               L  L VS+N     +P                T LP    GL +L++S N    S+
Sbjct: 139 LPPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SL 196

Query: 184 PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLM 243
           P+  ++   L +L   +N+LT  +P   +     LK L +S N L   +       + L 
Sbjct: 197 PTLPSE---LYKLWAYNNRLT-SLPALPS----GLKELIVSGNRLT-SLPV---LPSELK 244

Query: 244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
            L + GN+ +  +P   S    L  L +  N L+  +P  L +LS+   + +  N L   
Sbjct: 245 ELMVSGNR-LTSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299

Query: 304 IPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKN 345
                 ++++      S   I   +    +P     +HL+  
Sbjct: 300 TLQALREITSAP--GYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.5 bits (214), Expect = 8e-18
 Identities = 56/292 (19%), Positives = 97/292 (33%), Gaps = 72/292 (24%)

Query: 283 WLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHL 342
           W     A E              +  C  +   +L++  + +  TLP C  PAHI  + +
Sbjct: 15  WRRAAPAEES----RGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCL-PAHITTLVI 68

Query: 343 SKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ 402
             N +           P L TL++S N+L  S+P     L +L+       ++   +P  
Sbjct: 69  PDNNLTSLPALP----PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSG 122

Query: 403 LCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRS 462
           LC+L       +  N L+  +P                    +      +   A LP+  
Sbjct: 123 LCKL------WIFGNQLT-SLPVLPPGL------------QELSVSDNQL---ASLPA-- 158

Query: 463 APPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSH 522
                                   + + +  +    N+LT  +P     L     L++S 
Sbjct: 159 ------------------------LPSELCKLWAYNNQLT-SLPMLPSGL---QELSVSD 190

Query: 523 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 574
           N L  ++PT  S L     L    N L   +P      + L+   V+ N L+
Sbjct: 191 NQLA-SLPTLPSEL---YKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.6 bits (209), Expect = 3e-17
 Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 56/237 (23%)

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKF 252
              L++ ++ LT  +P+ +      +  L + +N+L                        
Sbjct: 42  NAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNLT----------------------- 74

Query: 253 IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLS 312
              +P    +   L  L +S N L+  +P     L  L     P  +L           S
Sbjct: 75  --SLPALPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPS 121

Query: 313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
            L  L +  N +  +LP    P  ++++ +S N++             L  L    N+L 
Sbjct: 122 GLCKLWIFGNQL-TSLPV--LPPGLQELSVSDNQLASLPALPSE----LCKLWAYNNQLT 174

Query: 373 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
            S+P     L +L+   ++ N +   +P    +L +   +   +N L+  +P+    
Sbjct: 175 -SLPMLPSGLQELS---VSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSG 222

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 9/136 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
            + +  + +S N+LT  +P     L     L +S N LT ++P   S L    SL +  N
Sbjct: 220 PSGLKELIVSGNRLT-SLPVLPSEL---KELMVSGNRLT-SLPMLPSGL---LSLSVYRN 271

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCN 607
            L  ++P  LI L++     +  N LS +     +  T                 S    
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 608 HNGLTTVTPEASTENQ 623
              L     +     +
Sbjct: 331 TRALHLAAADWLVPAR 346

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (291), Expect = 2e-28
 Identities = 64/290 (22%), Positives = 119/290 (41%), Gaps = 28/290 (9%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ 202
           + A LD+ NN     I       L  L  L L  N  +   P +FA +  LERL +S NQ
Sbjct: 53  DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 203 LTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGNKF-IGEIPE 258
           L  E+PE+M     +L+ L +  N    ++  +F+    L  ++ ++L  N      I  
Sbjct: 112 LK-ELPEKMPK---TLQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSSGIEN 164

Query: 259 -SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKIL 317
            +      L  + ++D +++  IP+  G   +L  + +  N +          L+ L  L
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 318 DLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIP 376
            LS NSI        +   H+ ++HL+ NK+  ++   + D  Y+  + L  N +  +I 
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIG 279

Query: 377 NR-------IDRLPQLNYLLLAHNYIK-GEIPVQLCQ-LKEVRLIDLSHN 417
           +          +    + + L  N ++  EI     + +     + L + 
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (260), Expect = 2e-24
 Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNK 251
              LD+ +N++T EI +       +L  L L NN +   I    F  L  L RL L  N+
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 252 FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNL-EGPIPIE-FC 309
            + E+PE + K   L  L + +N ++         L+ +  + +  N L    I    F 
Sbjct: 112 -LKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 310 QLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369
            +  L  + +++ +I  T+P    P  + ++HL  NKI     + +     L  L LS+N
Sbjct: 169 GMKKLSYIRIADTNI-TTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 370 RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
            +       +   P L  L L +N +  ++P  L   K ++++ L +NN+S
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (259), Expect = 3e-24
 Identities = 62/292 (21%), Positives = 103/292 (35%), Gaps = 32/292 (10%)

Query: 98  ADLSHLNLSG----QFPNWLLENNTNLVMLLLANNSL----FGSFRMPIHSHQNLATLDV 149
            D + L+L      +  +   +N  NL  L+L NN +     G+F         L  L +
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF----APLVKLERLYL 107

Query: 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLT-GEIP 208
           S N     +P ++      L +L +  N       S F  +  +  +++  N L    I 
Sbjct: 108 SKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 209 ERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE-SLSKCYLLG 267
                G   L  + +++ ++   I        +L  L LDGNK I ++   SL     L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLA 219

Query: 268 GLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI--- 324
            L LS N +S      L N   L  + + NN L   +P        ++++ L NN+I   
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAI 278

Query: 325 ----FGTLPSCFSPAHIEQVHLSKNKIEGRL--ESIIHDSPYLVTLDLSYNR 370
               F         A    V L  N ++      S          + L   +
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.4 bits (217), Expect = 8e-19
 Identities = 51/322 (15%), Positives = 105/322 (32%), Gaps = 76/322 (23%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
              +L ++  LIL NN   +I         L KL+              N L        
Sbjct: 71  DFKNLKNLHTLILINNKISKISPGA--FAPLVKLERLY--------LSKNQLK------- 113

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS 133
                 +              L+   +    ++ +    +      ++++ L  N     
Sbjct: 114 -----ELPEKMPKT-------LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTN----- 155

Query: 134 FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS-FADMKM 192
                     L +  + N  F G         +  L  + ++      +IP         
Sbjct: 156 ---------PLKSSGIENGAFQG---------MKKLSYIRIADTNIT-TIPQGLPPS--- 193

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDG 249
           L  L +  N++T ++      G  +L  L LS N   ++     +   N  +L  L L+ 
Sbjct: 194 LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLA---NTPHLRELHLNN 249

Query: 250 NKFIGEIPESLSKCYLLGGLYLSDNHLSG------EIPRWLGNLSALEGIRMPNNNLEGP 303
           NK + ++P  L+    +  +YL +N++S         P +    ++  G+ + +N ++  
Sbjct: 250 NK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-Y 307

Query: 304 IPIE---FCQLSALKILDLSNN 322
             I+   F  +     + L N 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 90/256 (35%)

Query: 6   NLLKTSLIS---LMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHY 62
           N LK+S I       +  +  + +++ +   IP  L    +L++L               
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTEL--------------- 197

Query: 63  NSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVM 122
                                                L    ++ +     L+   NL  
Sbjct: 198 ------------------------------------HLDGNKIT-KVDAASLKGLNNLAK 220

Query: 123 LLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS 182
           L L+ NS+                           +        P L +L+L+ N     
Sbjct: 221 LGLSFNSI-------------------------SAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 183 IPSSFADMKMLERLDISDNQLT-----GEIPERMATGCFSLKILALSNNSLQGH-IFSKK 236
           +P   AD K ++ + + +N ++        P    T   S   ++L +N +Q   I    
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 237 F-NLTNLMRLQLDGNK 251
           F  +     +QL   K
Sbjct: 315 FRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           +    + +DL  NK+T         L  +H L L +N ++   P  F+ L ++E L LS 
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 581
           N L  ++P ++    TL+  +V  N ++ K+    
Sbjct: 110 NQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 495 DLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 553
            L  NK+T ++       L+ +  L LS N+++     + +N   +  L L+ N L  K+
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 554 PPQLIVLNTLEVFKVAYNNLSGKIPDRA 581
           P  L     ++V  +  NN+S  I    
Sbjct: 256 PGGLADHKYIQVVYLHNNNIS-AIGSND 282

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           L  +  + LS N+L  E+P        +  L +  N +T    + F+ L Q+  ++L  N
Sbjct: 99  LVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 548 LLH-GKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
            L    I       +  L   ++A  N++  IP   
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           +  +S I ++   +T  IP   G    +  L+L  N +T     +   L  +  L LS+N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 548 LLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPD 579
            +   +    +     L    +  N L  K+P 
Sbjct: 227 SIS-AVDNGSLANTPHLRELHLNNNKLV-KVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTG------TIPTTFSNLKQIES 541
              +  + L+ NKL  ++P  +     I  + L +NN++         P   +       
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 542 LDLSYN-LLHGKIPP 555
           + L  N + + +I P
Sbjct: 298 VSLFSNPVQYWEIQP 312

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (276), Expect = 8e-26
 Identities = 54/234 (23%), Positives = 91/234 (38%), Gaps = 15/234 (6%)

Query: 167 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN 226
                LNL  N        +F  +  LE L +  N +  +I      G  SL  L L +N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 227 ---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE-SLSKCYLLGGLYLSD-NHLSGEIP 281
               +    F     L+ L  L L  N  I  IP  + ++   L  L L +   L     
Sbjct: 134 WLTVIPSGAFE---YLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 282 RWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQV 340
                L  L+ + +   N++  +P     L  L+ L++S N      P  F   + ++++
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 341 HLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHN 393
            +  +++     +       LV L+L++N L  S+P+ +   L  L  L L HN
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  106 bits (267), Expect = 1e-24
 Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 24/241 (9%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ 202
           N   L++  N     I  +   +L  L  L L RN+       +F  +  L  L++ DN 
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 203 LTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE- 258
           LT  IP         L+ L L NN   S+  + F+    + +LMRL L   K +  I E 
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGELKKLEYISEG 190

Query: 259 SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILD 318
           +    + L  L L   ++  ++P  L  L  LE + M  N+     P  F  LS+LK L 
Sbjct: 191 AFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 319 LSNNSI-------FGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRL 371
           + N+ +       F  L        + +++L+ N +      +     YLV L L +N  
Sbjct: 249 VMNSQVSLIERNAFDGLA------SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

Query: 372 H 372
           +
Sbjct: 303 N 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.3 bits (232), Expect = 3e-20
 Identities = 62/239 (25%), Positives = 99/239 (41%), Gaps = 23/239 (9%)

Query: 98  ADLSHLNLSG----QFPNWLLENNTNLVMLLLANNSL----FGSFRMPIHSHQNLATLDV 149
           ++  +LNL              +  +L +L L  NS+     G+F        +L TL++
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLEL 130

Query: 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISD-NQLTGEI 207
            +N+    IP     YL  L +L L  N    SIPS +F  +  L RLD+ +  +L   I
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YI 187

Query: 208 PERMATGCFSLKILALSNNSLQG-HIFSKKFNLTNLMRLQLDGNKFIGEIPE-SLSKCYL 265
            E    G F+LK L L   +++     +    L  L  L++ GN    EI   S      
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNH-FPEIRPGSFHGLSS 243

Query: 266 LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
           L  L++ ++ +S         L++L  + + +NNL       F  L  L  L L +N  
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.6 bits (225), Expect = 2e-19
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 42/261 (16%)

Query: 167 PGLMDLNLSRNAFNGSIPSS-FADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN 225
                +  +R   +  +P    ++      L++ +N +   I          L++L L  
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPSN---TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108

Query: 226 N---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNHLSGEIP 281
           N    ++   F+    L +L  L+L  N  +  IP  +      L  L+L +N +     
Sbjct: 109 NSIRQIEVGAFN---GLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPS 164

Query: 282 RWLGNLSALEGIRMPNNNLEGPIPIE-FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQV 340
                + +L  + +        I    F  L  LK L+L   +I   +P+  +P      
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPL----- 217

Query: 341 HLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 400
                               L  L++S N      P     L  L  L + ++ +   I 
Sbjct: 218 ------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIE 258

Query: 401 VQ-LCQLKEVRLIDLSHNNLS 420
                 L  +  ++L+HNNLS
Sbjct: 259 RNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 47/223 (21%), Positives = 77/223 (34%), Gaps = 20/223 (8%)

Query: 14  SLMHLISMEKLILSNNHFFQIPI-SLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLT 72
           +  HL  +E L L  N   QI + +   L +L+ L+ FD  +   T     +     +L 
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL---TVIPSGAFEYLSKLR 150

Query: 73  SISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANN 128
            + L       I    F   +     L   DL  L           E   NL  L L   
Sbjct: 151 ELWLRNNPIESIPSYAF-NRVPS---LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 129 SL--FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS 186
           ++    +          L  L++S N F   I       L  L  L +  +  +    ++
Sbjct: 207 NIKDMPNLT----PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 187 FADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229
           F  +  L  L+++ N L+  +P  + T    L  L L +N   
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.8 bits (166), Expect = 4e-12
 Identities = 50/264 (18%), Positives = 89/264 (33%), Gaps = 42/264 (15%)

Query: 314 LKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
            + L+L  N+I       F    H+E + L +N I        +    L TL+L  N L 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 373 GSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQ-LCQLKEVRLIDLSHNNLSGHIPSCLVNT 430
             IP+   + L +L  L L +N I+  IP     ++  +  +DL       +I       
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE----G 190

Query: 431 ALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTS 490
           A  G                               +   + +     N+        L  
Sbjct: 191 AFEG-------------------------------LFNLKYLNLGMCNIKDMPNLTPLVG 219

Query: 491 MSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550
           +  +++S N      P     LS +  L + ++ ++      F  L  +  L+L++N L 
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

Query: 551 GKIPPQLIV-LNTLEVFKVAYNNL 573
             +P  L   L  L    + +N  
Sbjct: 280 -SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           I ++   ++L  N +         +L  +  L L  N++       F+ L  + +L+L  
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 547 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
           N L   IP      L+ L    +  N +   IP  A
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 488 LTSMSGIDLS-CNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 545
           + S+  +DL    KL   I       L  +  LNL   N+   +P   + L  +E L++S
Sbjct: 170 VPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMS 226

Query: 546 YNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
            N    +I P     L++L+   V  + +S  I   A
Sbjct: 227 GNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNA 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (274), Expect = 1e-25
 Identities = 60/234 (25%), Positives = 95/234 (40%), Gaps = 15/234 (6%)

Query: 167 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN 226
                LNL  N       +SF  ++ LE L +S N +   I      G  +L  L L +N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 227 ---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESL-SKCYLLGGLYLSD-NHLSGEIP 281
              ++    F     L+ L  L L  N  I  IP    ++   L  L L +   LS    
Sbjct: 123 RLTTIPNGAFV---YLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 282 RWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQV 340
                LS L  + +   NL   IP     L  L  LDLS N +    P  F    H++++
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 341 HLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHN 393
            + +++I+    +   +   LV ++L++N L   +P+ +   L  L  + L HN
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (253), Expect = 6e-23
 Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 12/235 (5%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ 202
           N   L++  N     I V    +L  L  L LSRN        +F  +  L  L++ DN+
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 203 LTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE- 258
           LT  IP         LK L L NN   S+  + F+    + +L RL L   K +  I E 
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN---RIPSLRRLDLGELKRLSYISEG 179

Query: 259 SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILD 318
           +      L  L L+  +L  EIP  L  L  L+ + +  N+L    P  F  L  L+ L 
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 319 LSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
           +  + I     + F     + +++L+ N +      +     +L  + L +N  +
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 20/236 (8%)

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDG 249
             ++      L  E+P+ ++T   + ++L L  N    ++ + F    +L +L  LQL  
Sbjct: 45  FSKVICVRKNLR-EVPDGIST---NTRLLNLHENQIQIIKVNSFK---HLRHLEILQLSR 97

Query: 250 NKFIGEIPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE- 307
           N  I  I   + +    L  L L DN L+         LS L+ + + NN +E  IP   
Sbjct: 98  NH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYA 155

Query: 308 FCQLSALKILDLSNNSIFGTLPS-CFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
           F ++ +L+ LDL        +    F   +++  ++L+   +   + ++      L  LD
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLDELD 213

Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ-LCQLKEVRLIDLSHNNLS 420
           LS N L    P     L  L  L +  + I+  I       L+ +  I+L+HNNL+
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 8e-13
 Identities = 62/246 (25%), Positives = 91/246 (36%), Gaps = 48/246 (19%)

Query: 14  SLMHLISMEKLILSNNHFFQIPI-SLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLT 72
           S  HL  +E L LS NH   I I +   L NL+ L           E   N LT      
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL-----------ELFDNRLT------ 125

Query: 73  SISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLA-NNSL- 130
                  I  G F     +   LK   L +  +    P++      +L  L L     L 
Sbjct: 126 ------TIPNGAF----VYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 131 ---FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF 187
               G+F        NL  L+++       IP    T L  L +L+LS N  +   P SF
Sbjct: 175 YISEGAFE----GLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 188 ADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMR 244
             +  L++L +  +Q+   I         SL  + L++N    L   +F+    L +L R
Sbjct: 228 QGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT---PLHHLER 283

Query: 245 LQLDGN 250
           + L  N
Sbjct: 284 IHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 57/264 (21%), Positives = 95/264 (35%), Gaps = 42/264 (15%)

Query: 314 LKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
            ++L+L  N I     + F    H+E + LS+N I        +    L TL+L  NRL 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 373 GSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQL-CQLKEVRLIDLSHNNLSGHIPSCLVNT 430
            +IPN     L +L  L L +N I+  IP     ++  +R +DL       +I       
Sbjct: 126 -TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS----EG 179

Query: 431 ALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTS 490
           A  G                               +     +     N+        L  
Sbjct: 180 AFEG-------------------------------LSNLRYLNLAMCNLREIPNLTPLIK 208

Query: 491 MSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550
           +  +DLS N L+   P     L  +  L +  + +       F NL+ +  ++L++N L 
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 551 GKIPPQLIV-LNTLEVFKVAYNNL 573
             +P  L   L+ LE   + +N  
Sbjct: 269 -LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           I T+   ++L  N++         +L  +  L LS N++       F+ L  + +L+L  
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 547 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
           N L   IP    V L+ L+   +  N +   IP  A
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPT-TFSNLKQIESLDLS 545
           L+ +  + L  N +   IP+     +  +  L+L        I    F  L  +  L+L+
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 546 YNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 581
              L  +IP  L  L  L+   ++ N+LS  I   +
Sbjct: 194 MCNLR-EIPN-LTPLIKLDELDLSGNHLS-AIRPGS 226

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (273), Expect = 2e-25
 Identities = 70/339 (20%), Positives = 128/339 (37%), Gaps = 44/339 (12%)

Query: 118 TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN 177
            ++  + L+ NS+           Q+L  L V        I       L  L+ L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 178 AFNGSIPSS-FADMKMLERLDISDNQLTG-EIPERMATGCFSLKILALSNNSLQ----GH 231
            F   + +  F  +  LE L ++   L G  +         SL++L L +N+++      
Sbjct: 90  QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 232 IFSKKFNLTNLMRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGEIPRWLG-- 285
            F    N+     L L  NK +  I E    +    +    L LS   L      WLG  
Sbjct: 149 FFL---NMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFT-LLRLSSITLQDMNEYWLGWE 203

Query: 286 ------NLSALEGIRMPNNNLEGPIPIEFCQL---SALKILDLSNNSI---------FGT 327
                   +++  + +  N  +  +   F      + ++ L LSN+           F  
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 328 LPSC----FSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-DRL 382
             +        + ++   LSK+KI   L+S+      L  L L+ N ++  I +     L
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGL 322

Query: 383 PQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNLS 420
             L  L L+ N++   I  ++ + L ++ ++DLS+N++ 
Sbjct: 323 THLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  105 bits (265), Expect = 2e-24
 Identities = 83/446 (18%), Positives = 152/446 (34%), Gaps = 75/446 (16%)

Query: 182 SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLT 240
            +P   A    +  +D+S N +  E+ E   +    L+ L +   +    I +  F  L+
Sbjct: 24  QVPELPAH---VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 241 NLMRLQLDGNKFIGEIPES-LSKCYLLGGLYLSDNHL-SGEIPR-WLGNLSALEGIRMPN 297
           +L+ L+LD N+   ++     +    L  L L+  +L    +   +   L++LE + + +
Sbjct: 80  SLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 298 NNLEGPIP-IEFCQLSALKILDLSNNSIFGTLPSCF---SPAHIEQVHLSKNKIEGRLES 353
           NN++   P   F  +    +LDL+ N +              H   + LS   +      
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL------ 192

Query: 354 IIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 413
                      D++   L         +   +  L L+ N  K  +  +         I 
Sbjct: 193 ----------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242

Query: 414 LSHNNLSGHIPSCLVNTALSG------GHHEAVAPTSIWCGRASVYISACLPSRSAPPMG 467
               + S ++ S   +T             EA    +    ++ +     L         
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI---FALLKSV----- 294

Query: 468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLT 526
                 F+             T +  + L+ N++  +I       L+ +  LNLS N L 
Sbjct: 295 ------FSH-----------FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 527 GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFST 585
                 F NL ++E LDLSYN +   +  Q  + L  L+   +  N L   +PD   F  
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI-FDR 393

Query: 586 FEEDSY---EGNPFLCGKPLSKSCNH 608
                      NP+ C      SC  
Sbjct: 394 LTSLQKIWLHTNPWDC------SCPR 413

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.6 bits (238), Expect = 5e-21
 Identities = 76/365 (20%), Positives = 133/365 (36%), Gaps = 57/365 (15%)

Query: 86  PKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLA 145
                   DL+   +          N      ++L++L L  N                 
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF--------------- 91

Query: 146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSI--PSSFADMKMLERLDISDNQL 203
            L +    F+G         L  L  L L++   +G++   + F  +  LE L + DN +
Sbjct: 92  -LQLETGAFNG---------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 204 TGEIPERMATGCFSLKILALSNN---SLQGHIFSK-------KFNLTNLMRLQLDGNKFI 253
               P           +L L+ N   S+                 L+++    ++     
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 254 GEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIR-------------MPNNNL 300
            E   +  K   +  L LS N     + +   +  A   I+               + N 
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 301 EGPIPIEFCQL--SALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHD 357
           + P    F  L  S +K  DLS + IF  L S FS    +EQ+ L++N+I    ++    
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 358 SPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLS 415
             +L+ L+LS N L GSI +R+ + L +L  L L++N+I+  +  Q    L  ++ + L 
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALD 379

Query: 416 HNNLS 420
            N L 
Sbjct: 380 TNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 68/397 (17%), Positives = 116/397 (29%), Gaps = 56/397 (14%)

Query: 2   SLTINLLKTSLIS--LMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETE 59
            +        + +     L S+  L L  N F Q+         L+ L+           
Sbjct: 60  KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA--FNGLANLEVLT-------- 109

Query: 60  SHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTN 119
               +L              + G  F         L+   L   N+    P     N   
Sbjct: 110 LTQCNLD----------GAVLSGNFFKPL----TSLEMLVLRDNNIKKIQPASFFLNMRR 155

Query: 120 LVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAF 179
             +L L  N +                     +  +          L  +   +++    
Sbjct: 156 FHVLDLTFNKV---------------KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 180 NGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNL 239
                 +      +  LD+S N     + +R        KI +L  ++      S     
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 240 TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNN 299
                   D   F G     +          LS + +   +     + + LE + +  N 
Sbjct: 261 ----FKDPDNFTFKGLEASGVKT------CDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 300 LEGPIPIEFCQLSALKILDLSNNSIFGTLPSC-FSP-AHIEQVHLSKNKIEGRLESIIHD 357
           +       F  L+ L  L+LS N + G++ S  F     +E + LS N I    +     
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369

Query: 358 SPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHN 393
            P L  L L  N+L  S+P+ I DRL  L  + L  N
Sbjct: 370 LPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 44/195 (22%), Positives = 71/195 (36%), Gaps = 22/195 (11%)

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHL--NLSGQFPNWLLEN--NTNLVMLLL 125
                    + D     K             S           N+  +    + +    L
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282

Query: 126 ANNSLF----GSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG 181
           + + +F      F        +L  L ++ N  +  I       L  L+ LNLS+N   G
Sbjct: 283 SKSKIFALLKSVF----SHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-G 336

Query: 182 SIPS-SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKF 237
           SI S  F ++  LE LD+S N +   + ++   G  +LK LAL  N   S+   IF    
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD--- 392

Query: 238 NLTNLMRLQLDGNKF 252
            LT+L ++ L  N +
Sbjct: 393 RLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 46/303 (15%), Positives = 82/303 (27%), Gaps = 55/303 (18%)

Query: 334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAH 392
           PAH+  V LS N I    E+       L  L +        I N     L  L  L L +
Sbjct: 29  PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 393 NYIKGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRAS 451
           N    ++       L  + ++ L+  NL                                
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCNLD------------------------------- 116

Query: 452 VYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI---LTSMSGIDLSCNKLT------ 502
               A L      P+   E +     N+           +     +DL+ NK+       
Sbjct: 117 ---GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173

Query: 503 ----GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP--- 555
                     +  LS I   +++   L             I +LDLS N     +     
Sbjct: 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 556 QLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNGLTTVT 615
             I    ++   ++ +   G       F   +  +++G      K      + + +  + 
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC--DLSKSKIFALL 291

Query: 616 PEA 618
              
Sbjct: 292 KSV 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (262), Expect = 1e-24
 Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 23/269 (8%)

Query: 167 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN 226
             +  L+LS N       S       L+ L ++ N +   I E   +   SL+ L LS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 227 ---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPES--LSKCYLLGGLYLSDNHLSGEIP 281
              +L    F     L++L  L L GN     + E+   S    L  L + +     +I 
Sbjct: 111 YLSNLSSSWFK---PLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 282 -RWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAH-IEQ 339
            +    L+ LE + +  ++L+   P     +  +  L L        L         +E 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 340 VHLSKNKIEG----RLESIIHDS----PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLA 391
           + L    ++      L +   +S         + ++   L   +   ++++  L  L  +
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFS 285

Query: 392 HNYIKGEIPVQLCQ-LKEVRLIDLSHNNL 419
            N +K  +P  +   L  ++ I L  N  
Sbjct: 286 RNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.9 bits (226), Expect = 6e-20
 Identities = 50/270 (18%), Positives = 100/270 (37%), Gaps = 22/270 (8%)

Query: 118 TNLVMLLLANNSL----FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
             +  L L+NN +                NL  L +++N  +  I  +  + L  L  L+
Sbjct: 52  EAVKSLDLSNNRITYISNSDL----QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 174 LSRNAFNGSIPSS-FADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHI 232
           LS N    ++ SS F  +  L  L++  N         + +    L+IL + N      I
Sbjct: 107 LSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 233 FSKKF-NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWL-GNLSAL 290
             K F  LT L  L++D +      P+SL     +  L L        +        S++
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSV 224

Query: 291 EGIRMPNNNLEGPIPIE--------FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHL 342
           E + + + +L+     E          +    + + +++ S+F  +      + + ++  
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284

Query: 343 SKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
           S+N+++   + I      L  + L  N   
Sbjct: 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 61/360 (16%), Positives = 104/360 (28%), Gaps = 88/360 (24%)

Query: 197 DISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIGE 255
             S   L   IP  +     ++K L LSNN +  +I +       NL  L L  N  I  
Sbjct: 37  KGSSGSLN-SIPSGLTE---AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG-INT 90

Query: 256 IPE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG-PIPIEFCQLSA 313
           I E S S    L  L LS N+LS     W   LS+L  + +  N  +       F  L+ 
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 314 LKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHG 373
           L+IL + N   F  +                               +L  L++  + L  
Sbjct: 151 LQILRVGNMDTFTKIQ----------------------RKDFAGLTFLEELEIDASDLQS 188

Query: 374 SIPNRIDRLPQLNYLLLAHN---YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNT 430
             P  +  +  +++L+L       +          ++ + L D   +       S     
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 431 ALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTS 490
           +L                                                         +
Sbjct: 249 SLIK-----------------------------------------------------KFT 255

Query: 491 MSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550
              + ++   L  ++   +  +SG+  L  S N L       F  L  ++ + L  N   
Sbjct: 256 FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 58/307 (18%), Positives = 104/307 (33%), Gaps = 70/307 (22%)

Query: 17  HLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISL 76
             ++++ L+L++N    I        +L  L+  D          YN       L+++S 
Sbjct: 74  RCVNLQALVLTSNGINTIEEDS--FSSLGSLEHLDL--------SYN------YLSNLS- 116

Query: 77  SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRM 136
                   F         L +  L+ LNL G   N             L   SLF     
Sbjct: 117 -----SSWF-------KPLSS--LTFLNLLG---NPYKT---------LGETSLFSHLT- 149

Query: 137 PIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 196
                  L  L V N      I  +    L  L +L +  +      P S   ++ +  L
Sbjct: 150 ------KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

Query: 197 DISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEI 256
            +   Q    + E       S++ L L +  L        F+ + L   + +        
Sbjct: 204 ILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT------FHFSELSTGETN-------- 248

Query: 257 PESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQLSALK 315
             SL K +    + ++D  L  ++ + L  +S L  +    N L+  +P   F +L++L+
Sbjct: 249 --SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQ 304

Query: 316 ILDLSNN 322
            + L  N
Sbjct: 305 KIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 30/226 (13%), Positives = 64/226 (28%), Gaps = 46/226 (20%)

Query: 17  HLISMEKLILSNNHFFQIP--ISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSI 74
            L S+  L L  N +  +        L  L  L+  +                    T I
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM----------------DTFTKI 165

Query: 75  SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL---- 130
                       K       L+  ++   +L   +    L++  N+  L+L         
Sbjct: 166 Q----------RKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 131 FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIG-------TYLPGLMDLNLSRNAFNGSI 183
                +      ++  L++ +         E+               ++ ++  +    +
Sbjct: 215 EIFVDVT----SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QV 269

Query: 184 PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229
                 +  L  L+ S NQL   +P+ +     SL+ + L  N   
Sbjct: 270 MKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 24/208 (11%)

Query: 358 SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQL-CQLKEVRLIDLSH 416
           +  + +LDLS NR+     + + R   L  L+L  N I   I       L  +  +DLS+
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 417 NNLSGHIP-------SCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKE 469
           N LS ++        S L    L G  ++ +  TS++           L       +G  
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH---------LTKLQILRVGNM 159

Query: 470 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI 529
           +T     +     + G  LT +  +++  + L    P  +  +  +  L L        +
Sbjct: 160 DTFTKIQRKD---FAG--LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 530 PTTFSNLKQIESLDLSYNLLHGKIPPQL 557
                    +E L+L    L      +L
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSEL 242

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 495 DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 554
             S   L   IP+ +     + +L+LS+N +T    +       +++L L+ N ++  I 
Sbjct: 37  KGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92

Query: 555 PQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
                 L +LE   ++YN LS  +    
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLS-NLSSSW 119

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (254), Expect = 1e-23
 Identities = 62/298 (20%), Positives = 113/298 (37%), Gaps = 32/298 (10%)

Query: 137 PIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 196
           P   H +L  +  S+      +P EI    P    L+L  N  +      F  ++ L  L
Sbjct: 28  PFGCHCHLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYAL 83

Query: 197 DISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGNKFI 253
            + +N+++ +I E+  +    L+ L +S N    +  ++ S      +L+ L++  N+ I
Sbjct: 84  VLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNR-I 135

Query: 254 GEIPE-SLSKCYLLGGLYLSDNHLSGEI--PRWLGNLSALEGIRMPNNNLEGPIPIEFCQ 310
            ++P+   S    +  + +  N L      P     L  L  +R+    L G IP +   
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL-- 191

Query: 311 LSALKILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369
              L  L L +N I           + + ++ L  N+I       +   P L  L L  N
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 370 RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ-------LCQLKEVRLIDLSHNNLS 420
           +L   +P  +  L  L  + L  N I  ++ V          +      I L +N + 
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 99.7 bits (249), Expect = 5e-23
 Identities = 57/291 (19%), Positives = 96/291 (32%), Gaps = 31/291 (10%)

Query: 98  ADLSHLNLSG----QFPNWLLENNTNLVMLLLANNSL----FGSFRMPIHSHQNLATLDV 149
            D + L+L      +      +   +L  L+L NN +      +F       + L  L +
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS----PLRKLQKLYI 109

Query: 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE 209
           S N     IP  +      L++L +  N         F+ ++ +  +++  N L     E
Sbjct: 110 SKNHLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 210 RMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE-SLSKCYLLGG 268
             A     L  L +S   L   I         L  L LD NK I  I    L +   L  
Sbjct: 166 PGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNK-IQAIELEDLLRYSKLYR 221

Query: 269 LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI---- 324
           L L  N +       L  L  L  + + NN L   +P     L  L+++ L  N+I    
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 325 ---FGTLPSCFSPAHIEQVHLSKNKIEGRL--ESIIHDSPYLVTLDLSYNR 370
              F  +      A+   + L  N +       +        + +     +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 53/321 (16%), Positives = 86/321 (26%), Gaps = 75/321 (23%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
               L  +  L+L NN   +I         L KL+              N L        
Sbjct: 73  DFKGLQHLYALVLVNNKISKIHEKA--FSPLRKLQKLY--------ISKNHLV------- 115

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS 133
                 I              L    +    +  + P  +     N+  + +  N     
Sbjct: 116 -----EIPPNLPSS-------LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN----- 157

Query: 134 FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML 193
                     L         F G            L  L +S     G           L
Sbjct: 158 ---------PLENSGFEPGAFDG----------LKLNYLRISEAKLTGIPKDLPET---L 195

Query: 194 ERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGN 250
             L +  N++   I          L  L L +N    ++    S    L  L  L LD N
Sbjct: 196 NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS---FLPTLRELHLDNN 251

Query: 251 KFIGEIPESLSKCYLLGGLYLSDNHLSGEIP-------RWLGNLSALEGIRMPNNNLEGP 303
           K +  +P  L    LL  +YL  N+++ ++         +    +   GI + NN +   
Sbjct: 252 K-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 304 I--PIEFCQLSALKILDLSNN 322
              P  F  ++    +   N 
Sbjct: 310 EVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 56/271 (20%), Positives = 94/271 (34%), Gaps = 46/271 (16%)

Query: 314 LKILDLSNNSIFGTLPSCFSPA-HIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
             +LDL NN I       F    H+  + L  NKI    E        L  L +S N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 373 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPSCLVNTA 431
             IP  +     L  L +  N I+ ++P  +   L+ +  I++  N         L N+ 
Sbjct: 116 -EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN--------PLENSG 163

Query: 432 LSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSM 491
              G  + +    +    A +           P                      +  ++
Sbjct: 164 FEPGAFDGLKLNYLRISEAKL--------TGIPK--------------------DLPETL 195

Query: 492 SGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550
           + + L  NK+   I  +     S ++ L L HN +      + S L  +  L L  N L 
Sbjct: 196 NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254

Query: 551 GKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 581
            ++P  L  L  L+V  +  NN++ K+    
Sbjct: 255 -RVPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           I    + +DL  N ++         L  ++AL L +N ++      FS L++++ L +S 
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 581
           N L  +IPP L   ++L   ++  N +  K+P   
Sbjct: 112 NHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGV 142

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (252), Expect = 1e-23
 Identities = 57/281 (20%), Positives = 93/281 (33%), Gaps = 36/281 (12%)

Query: 146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLT- 204
            +  ++      +P  I         L L  N         F  +  L +L +S N L+ 
Sbjct: 11  EIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 205 GEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPES--LSK 262
                +   G  SLK L LS N +   + S    L  L  L    +  + ++ E      
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLS 124

Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNN-LEGPIPIEFCQLSALKILDLSN 321
              L  L +S  H           LS+LE ++M  N+  E  +P  F +L  L  LDLS 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 322 NSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDR 381
             +   L                        +  +    L  L++S+N            
Sbjct: 185 CQL-EQLS----------------------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 382 LPQLNYLLLAHNYIKGEIPVQLCQ--LKEVRLIDLSHNNLS 420
           L  L  L  + N+I      Q  Q     +  ++L+ N+ +
Sbjct: 222 LNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 48/243 (19%), Positives = 82/243 (33%), Gaps = 25/243 (10%)

Query: 71  LTSISLSG----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQF-PNWLLENNTNLVMLLL 125
            T + L       +  G F K       L    LS   LS +   +      T+L  L L
Sbjct: 30  ATRLELESNKLQSLPHGVFDKL----TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 126 ANNSLF---GSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS 182
           + N +     +F       + L  LD  ++         +   L  L+ L++S      +
Sbjct: 86  SFNGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 183 IPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNL 239
               F  +  LE L ++ N         + T   +L  L LS      L    F+   +L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SL 198

Query: 240 TNLMRLQLDGNKFIGEIPES-LSKCYLLGGLYLSDNHLSGEIPRWLGNL-SALEGIRMPN 297
           ++L  L +  N     +          L  L  S NH+     + L +  S+L  + +  
Sbjct: 199 SSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

Query: 298 NNL 300
           N+ 
Sbjct: 258 NDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 9/163 (5%)

Query: 269 LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE--GPIPIEFCQLSALKILDLSNNSIFG 326
           L L  N L          L+ L  + + +N L   G         ++LK LDLS N +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-I 91

Query: 327 TLPSCFSP-AHIEQVHLSKNKIEGRLE-SIIHDSPYLVTLDLSYNRLHGSIPNRI-DRLP 383
           T+ S F     +E +    + ++   E S+      L+ LD+S+        N I + L 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLS 150

Query: 384 QLNYLLLAHN-YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
            L  L +A N + +  +P    +L+ +  +DLS   L   +  
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 33/243 (13%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
               L  + KL LS+N         +  F  + LK  D          +N       + +
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS--------FN------GVIT 92

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS 133
           +S         F         L++ D  H NL       +  +  NL+ L +++     +
Sbjct: 93  MS-------SNFLGL----EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 134 FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKM 192
           F    +   +L  L ++ N F  +   +I T L  L  L+LS+      +   +F  +  
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSS 200

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDG 249
           L+ L++S N     +         SL++L  S N   + +          ++L  L L  
Sbjct: 201 LQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH--FPSSLAFLNLTQ 257

Query: 250 NKF 252
           N F
Sbjct: 258 NDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLT--GTIPTTFSNLKQIESLDL 544
           I +S + ++L  NKL          L+ +  L+LS N L+  G    +      ++ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 545 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 584
           S+N +   +    + L  LE     ++NL  ++ + + F 
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 123

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 488 LTSMSGIDLSCNKLT--GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 545
           LT ++ + LS N L+  G         + +  L+LS N +  T+ + F  L+Q+E LD  
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 109

Query: 546 YNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
           ++ L       + + L  L    +++ +      +  
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 494 IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK- 552
           I  +   LT  +PT I   S    L L  N L       F  L Q+  L LS N L  K 
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 553 -IPPQLIVLNTLEVFKVAYNNLS 574
                     +L+   +++N + 
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI 91

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           L +++ +DLS  +L  ++       LS +  LN+SHNN        +  L  ++ LD S 
Sbjct: 174 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 547 NLL 549
           N +
Sbjct: 233 NHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           L  +  +D   + L       +   L  +  L++SH +        F+ L  +E L ++ 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 547 NLLHGKIPPQ-LIVLNTLEVFKVAYNNLSGKIPDRA 581
           N       P     L  L    ++   L  ++   A
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 99.2 bits (247), Expect = 6e-23
 Identities = 58/305 (19%), Positives = 95/305 (31%), Gaps = 33/305 (10%)

Query: 99  DLSHLNLSGQFPNW-------------LLENNTNLVMLLLANNSLFGSFRMPIHSHQ-NL 144
           +    N S   P+W             L     +L  LL   ++     +        +L
Sbjct: 11  ESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSL 70

Query: 145 ATLDVSNNFFHGHIPVEIGTYL--PGLMDLNLSRNAFNGSIPSSFADMKM--LERLDISD 200
             L V        I       L   GL +L L      G+ P    +     L  L++ +
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 201 NQLTGEIPERMATGCF---SLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP 257
                          +    LK+L+++          +      L  L L  N  +GE  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 258 ESLSKCYL----LGGLYLSDNH---LSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ 310
              + C L    L  L L +      SG           L+G+ + +N+L        C 
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 311 -LSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369
             S L  L+LS   +   +P    PA +  + LS N+++        + P +  L L  N
Sbjct: 251 WPSQLNSLNLSFTGL-KQVPKG-LPAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGN 306

Query: 370 RLHGS 374
               S
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 60/289 (20%), Positives = 87/289 (30%), Gaps = 20/289 (6%)

Query: 1   MSLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETES 60
           +      L     SL +L+           F  I  SL    +L +L      I +    
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSL----SLKRLTVRAARIPSRILF 86

Query: 61  HYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQ-FPNWLLE---- 115
               +     L  ++L      GT P  L          L+  N+S      WL E    
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVE---IGTYLPGLMDL 172
               L +L +A           +     L+TLD+S+N   G   +         P L  L
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 173 NLSRNAFN---GSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229
            L         G   +  A    L+ LD+S N L              L  L LS   L+
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 230 GHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 278
             +         L  L L  N+ +   P S  +   +G L L  N    
Sbjct: 267 -QVPKGLP--AKLSVLDLSYNR-LDRNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 52/259 (20%), Positives = 86/259 (33%), Gaps = 22/259 (8%)

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFS---KKFNLTNLMRLQLDG 249
           LE L    +               SLK L +    +   I     +   ++ L  L L+ 
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 250 NKFIGEIPESLSKCYLLGGLYLSDNHLS-GEIPRWLGNLS-----ALEGIRMPNNNLEGP 303
            +  G  P  L +        L+  ++S      WL  L       L+ + +   +    
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 304 IPIEFCQLSALKILDLSNNSIFGTLPSCFSPA-----HIEQVHLSKNK---IEGRLESII 355
              +     AL  LDLS+N   G      +        ++ + L         G   ++ 
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 356 HDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 414
                L  LDLS+N L  +      D   QLN L L+   +K    V      ++ ++DL
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDL 281

Query: 415 SHNNLSGHIPSCLVNTALS 433
           S+N L    PS      + 
Sbjct: 282 SYNRLD-RNPSPDELPQVG 299

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 42/240 (17%), Positives = 74/240 (30%), Gaps = 38/240 (15%)

Query: 202 QLTGEIPERMATGCFSLKI-LALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESL 260
              G     +  G  SL+  L   +       F+      +L RL +   +    I    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 261 SKCYLLGG---LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKIL 317
            +   + G   L L +  ++G  P                       P+       L IL
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAP----------------------PPLLEATGPDLNIL 126

Query: 318 DLSNNSIFGTLP-----SCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
           +L N S             +    ++ + +++          +   P L TLDLS N   
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 373 GSIPNRI----DRLPQLNYLLLAHNYIK---GEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
           G           + P L  L L +  ++   G          +++ +DLSHN+L     +
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 39/222 (17%)

Query: 364 LDLSYNRLHGSIPNRIDRL---PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
           L +   R+   I     R+     L  L L +  + G  P  L +     L  L+  N+S
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 421 GHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMS 480
                  +                             L     P + K  ++        
Sbjct: 133 WATRDAWLAE---------------------------LQQWLKPGL-KVLSIAQAHSLNF 164

Query: 481 YYYQGRILTSMSGIDLSCNKLTGEIP----TQIGYLSGIHALNLSHNNLT---GTIPTTF 533
              Q R+  ++S +DLS N   GE              +  L L +  +    G      
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 534 SNLKQIESLDLSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLS 574
           +   Q++ LDLS+N L            + L    +++  L 
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 7/103 (6%)

Query: 484 QGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI-------PTTFSNL 536
           Q  +   +  + ++          Q+     +  L+LS N   G         P  F  L
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 537 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
           + +   +       G           L+   +++N+L      
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (253), Expect = 1e-22
 Identities = 60/269 (22%), Positives = 100/269 (37%), Gaps = 44/269 (16%)

Query: 166 LPGLMDLNLSRNAFNGSIPSSFADM----KMLERLDISD---NQLTGEIPERMATGCFSL 218
           LP   + +LS+N+F  +I  ++AD        E+  +     N+    + E +       
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QF 61

Query: 219 KILALSNNSLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH 275
             L L+  +L     ++         +  L++  N  +  +PE  +    L  L   DN 
Sbjct: 62  SELQLNRLNLSSLPDNLPP------QITVLEITQNA-LISLPELPAS---LEYLDACDNR 111

Query: 276 LSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPA 335
           LS  +P    +L  L    + NN L   +P     L   + ++  NN +   LP    P 
Sbjct: 112 LS-TLPELPASLKHL---DVDNNQLTM-LPELPALL---EYINADNNQL-TMLPE--LPT 160

Query: 336 HIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQL----NYLLLA 391
            +E + +  N++   L  +      L  LD+S N L  S+P    R         +    
Sbjct: 161 SLEVLSVRNNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 392 HNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
            N I   IP  +  L     I L  N LS
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.9 bits (246), Expect = 9e-22
 Identities = 60/335 (17%), Positives = 106/335 (31%), Gaps = 60/335 (17%)

Query: 99  DLSHLNLSGQFPNWL--LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHG 156
           +  +  +SG + ++    +      +     N       +        + L ++      
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVS--LLKECLINQFSELQLNRLNLS- 72

Query: 157 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCF 216
            +P  +    P +  L +++NA   S+P   A    LE LD  DN+L+  +PE  A    
Sbjct: 73  SLPDNLP---PQITVLEITQNAL-ISLPELPAS---LEYLDACDNRLS-TLPELPA---- 120

Query: 217 SLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 276
           SLK L + NN L   +  +      L  +  D N+ +  +PE  +    L  L + +N L
Sbjct: 121 SLKHLDVDNNQLT--MLPE--LPALLEYINADNNQ-LTMLPELPTS---LEVLSVRNNQL 172

Query: 277 SGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALK----ILDLSNNSIFGTLPSCF 332
           +  +P    +L AL    +  N LE  +P    +    +          N I   +P   
Sbjct: 173 T-FLPELPESLEAL---DVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRI-THIPENI 226

Query: 333 SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAH 392
                             L+          T+ L  N L   I   + +           
Sbjct: 227 ----------------LSLDP-------TCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 393 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
            Y       Q        L D        +  S +
Sbjct: 264 IYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDV 296

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.0 bits (228), Expect = 1e-19
 Identities = 48/240 (20%), Positives = 83/240 (34%), Gaps = 44/240 (18%)

Query: 95  LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL------FGSFRMPIHSHQNLATLD 148
                L+ LNLS   P+ L      + +L +  N+L                  +L  LD
Sbjct: 61  FSELQLNRLNLS-SLPDNLP---PQITVLEITQNALISLPELPA----------SLEYLD 106

Query: 149 VSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIP 208
             +N     +P         L  L++  N     +P   A   +LE ++  +NQLT  +P
Sbjct: 107 ACDNRLS-TLPELPA----SLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLP 156

Query: 209 ERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKC----Y 264
           E       SL++L++ NN L   +        +L  L +  N  +  +P    +      
Sbjct: 157 ELPT----SLEVLSVRNNQLT-FLPEL---PESLEALDVSTNL-LESLPAVPVRNHHSEE 207

Query: 265 LLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI 324
                   +N ++  IP  + +L     I + +N L   I     Q +A           
Sbjct: 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.8 bits (173), Expect = 6e-13
 Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 16/160 (10%)

Query: 271 LSDNHLSGEIPRWLGNLSALEGIRMPNNNL-EGPIPIEFCQLSALKILDLSNNSIFGTLP 329
              N +SG    +       E   +P  N  E    ++ C ++    L L+  ++  +LP
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL-SSLP 75

Query: 330 SCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLL 389
               P  I  + +++N +    E        L  LD   NRL  ++P   +    L +L 
Sbjct: 76  DNL-PPQITVLEITQNALISLPELP----ASLEYLDACDNRLS-TLP---ELPASLKHLD 126

Query: 390 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN 429
           + +N +   +P     L+    I+  +N L+  +P    +
Sbjct: 127 VDNNQLT-MLPELPALLEY---INADNNQLT-MLPELPTS 161

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 10/146 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIES----LD 543
            TS+  + +  N+LT  +P     L    AL++S N L  ++P         E       
Sbjct: 159 PTSLEVLSVRNNQLT-FLPELPESL---EALDVSTNLLE-SLPAVPVRNHHSEETEIFFR 213

Query: 544 LSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLS 603
              N +   IP  ++ L+      +  N LS +I +     T + D +    +       
Sbjct: 214 CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 604 KSCNHNGLTTVTPEASTENQGDSLID 629
           ++  H  L         EN+   +  
Sbjct: 273 QNTLHRPLADAVTAWFPENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 65/230 (28%)

Query: 356 HDSPYLVTLDLSYNRL---HGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 412
            ++ + ++ +  YN +   +    +  D+  +        N     +    C + +   +
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLINQFSEL 64

Query: 413 DLSHNNLS---GHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKE 469
            L+  NLS    ++P  +    ++     +                  LP          
Sbjct: 65  QLNRLNLSSLPDNLPPQITVLEITQNALIS------------------LPEL-------- 98

Query: 470 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI 529
                               S+  +D   N+L+  +P     L     L++ +N LT  +
Sbjct: 99  ------------------PASLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT-ML 135

Query: 530 PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
           P   + L   E ++   N L   +P       +LEV  V  N L+  +P+
Sbjct: 136 PELPALL---EYINADNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPE 177

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (250), Expect = 2e-22
 Identities = 70/474 (14%), Positives = 145/474 (30%), Gaps = 57/474 (12%)

Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH 231
              +      +   S   +  L  LD  ++ +T ++          L  L  ++N++   
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSNNITTL 79

Query: 232 IFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALE 291
             S     TNL  L  D NK +  +   ++    L  L    N L+ ++   +     L 
Sbjct: 80  DLS---QNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLT 130

Query: 292 GIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL 351
            +    N L     I+    + L  LD   N    T         +  +  S NKI    
Sbjct: 131 YLNCARNTLT---EIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKIT--- 183

Query: 352 ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRL 411
           E  +  +  L  L+   N +   +   +++  QL +L  + N +  EI   +  L ++  
Sbjct: 184 ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTY 237

Query: 412 IDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGR---ASVYISACLPSRSAPPMGK 468
            D S N L+  +      + L          T++ C +     + ++            +
Sbjct: 238 FDCSVNPLT-ELDVST-LSKL----------TTLHCIQTDLLEIDLTHNT---------Q 276

Query: 469 EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGT 528
               Q               T +  +D     +T E+   +     +  L L++  LT  
Sbjct: 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-E 332

Query: 529 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEE 588
           +    S+  +++SL      +  +    +  +  L     A         +    ++   
Sbjct: 333 LD--VSHNTKLKSLSCVNAHI--QDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

Query: 589 DSYEGNPFLCGKPLSKSCNHNGLTTVTPEASTENQGDSLIDTDSFLITFTVSYG 642
                     G P++      G+        T     +     ++  T      
Sbjct: 389 AVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAI 442

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 71/428 (16%), Positives = 129/428 (30%), Gaps = 99/428 (23%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
           T +  +  L  + KLI ++N+   + +S       + L               N      
Sbjct: 55  TDMTGIEKLTGLTKLICTSNNITTLDLS-----QNTNLTYLA--------CDSN------ 95

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWL----LENNTNLVMLLL 125
           +LT++ ++                      L++LN      N L    +  N  L  L  
Sbjct: 96  KLTNLDVT------------------PLTKLTYLNCDT---NKLTKLDVSQNPLLTYLNC 134

Query: 126 ANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 185
           A N               L  +DVS+N                L +L+   N        
Sbjct: 135 ARN--------------TLTEIDVSHN--------------TQLTELDCHLN--KKITKL 164

Query: 186 SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL 245
                  L  LD S N++T E+     +    L  L    N++     +       L  L
Sbjct: 165 DVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKLDLN---QNIQLTFL 217

Query: 246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP 305
               NK + EI   ++    L     S N L+ E+   +  LS L  +     +L     
Sbjct: 218 DCSSNK-LTEID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE--- 268

Query: 306 IEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLD 365
           I+    + L             L    +   +  +      I    E  +  +P LV L 
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELDVTHNT-QLYLLDCQAAGIT---ELDLSQNPKLVYLY 324

Query: 366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
           L+   L   +   +    +L  L   + +I+ +    + ++  +     +          
Sbjct: 325 LNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKE 379

Query: 426 CLVNTALS 433
            L N +L+
Sbjct: 380 TLTNNSLT 387

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 68/452 (15%), Positives = 131/452 (28%), Gaps = 87/452 (19%)

Query: 117 NTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSR 176
           + N    + A   +  +  +       L +LD  N+       +E    L GL  L  + 
Sbjct: 17  DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTGLTKLICTS 73

Query: 177 NAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKK 236
           N    ++    +    L  L    N+LT  +     T    L  L    N L     S  
Sbjct: 74  NNIT-TLD--LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVS-- 124

Query: 237 FNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMP 296
                L  L    N  + EI   +S    L  L    N    ++   +   + L  +   
Sbjct: 125 -QNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSI----FGTLPSCFSPAHIEQVHLSKNKIEGRLE 352
            N +     ++  Q   L  L+   N+I                +  +  S NK+     
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTNNITKLDLNQNIQ------LTFLDCSSNKL----T 225

Query: 353 SI-IHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRL 411
            I +     L   D S N L   +   +  L +L  L      +  EI   L    ++  
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIY 279

Query: 412 IDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEET 471
                      +     NT L                   +   A               
Sbjct: 280 FQAEGCRKIKELDVTH-NTQLY-----------------LLDCQAA-------------- 307

Query: 472 VQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT 531
              T  ++S          +  + L+  +LT E+   + + + + +L+  + ++      
Sbjct: 308 -GITELDLSQ------NPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS- 355

Query: 532 TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTL 563
           +   +  + +   +       +P + +  N+L
Sbjct: 356 SVGKIPALNNNFEAEGQTI-TMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 57/330 (17%), Positives = 104/330 (31%), Gaps = 43/330 (13%)

Query: 95  LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFF 154
             +   +   +         E    L  L   N+S+  +    I     L  L  ++N  
Sbjct: 20  FASEVAAAFEMQ-ATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNI 76

Query: 155 HGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATG 214
              + +   +    L  L    N    ++      +  L  L+   N+LT ++     + 
Sbjct: 77  -TTLDL---SQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLDV---SQ 125

Query: 215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274
              L  L  + N+L     S   + T L  L    NK I ++   ++    L  L  S N
Sbjct: 126 NPLLTYLNCARNTLTEIDVS---HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180

Query: 275 HLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI----FGTLPS 330
            ++ E+   +     L  +    NN+     ++  Q   L  LD S+N +       L  
Sbjct: 181 KIT-ELD--VSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLTEIDVTPLTQ 234

Query: 331 CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLL 390
                 +     S N +    E  +     L TL      L   I   +    QL Y   
Sbjct: 235 ------LTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQA 282

Query: 391 AHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
                  E+   +    ++ L+D     ++
Sbjct: 283 EGCRKIKELD--VTHNTQLYLLDCQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.8 bits (166), Expect = 5e-12
 Identities = 50/323 (15%), Positives = 88/323 (27%), Gaps = 64/323 (19%)

Query: 6   NLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSL 65
              K + + +     +  L  S N   ++ +S         L   +   C       N  
Sbjct: 157 LNKKITKLDVTPQTQLTTLDCSFNKITELDVS-----QNKLLNRLN---C-----DTN-- 201

Query: 66  TPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWL----LENNTNLV 121
                +T + L+                   N  L+ L+ S    N L    +   T L 
Sbjct: 202 ----NITKLDLNQ------------------NIQLTFLDCSS---NKLTEIDVTPLTQLT 236

Query: 122 MLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG 181
               + N L     + + +   L TL          I +   T+   L+           
Sbjct: 237 YFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EIDL---THNTQLIYFQAEGC--RK 287

Query: 182 SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTN 241
                      L  LD     +T E+     +    L  L L+N  L     S   + T 
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT-ELD---LSQNPKLVYLYLNNTELTELDVS---HNTK 340

Query: 242 LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301
           L  L       I +    + K   L   + ++          L N S    +    + L+
Sbjct: 341 LKSLSCVNAH-IQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV--SPDLLD 396

Query: 302 GPIPIEFCQLSALKILDLSNNSI 324
                   +     + D + N+I
Sbjct: 397 QFGNPMNIEPGDGGVYDQATNTI 419

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.2 bits (240), Expect = 3e-22
 Identities = 61/261 (23%), Positives = 85/261 (32%), Gaps = 41/261 (15%)

Query: 140 SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDIS 199
            ++   T           +PV I         + L  N  +    +SF   + L  L + 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 200 DNQLTGEIPERMATGCFSLKILALSNN----SLQGHIFSKKFNLTNLMRLQLDGNKFIGE 255
            N L   I     TG   L+ L LS+N    S+    F     L  L  L LD    + E
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCG-LQE 119

Query: 256 IPE-SLSKCYLLGGLYLSDNHLSGEIP-RWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA 313
           +          L  LYL DN L   +P     +L  L  + +  N +       F  L +
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 314 LKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHG 373
           L  L L  N +    P  F         L +                L+TL L  N L  
Sbjct: 179 LDRLLLHQNRVAHVHPHAFR-------DLGR----------------LMTLYLFANNLS- 214

Query: 374 SIPNRI-DRLPQLNYLLLAHN 393
           ++P      L  L YL L  N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 55/232 (23%), Positives = 83/232 (35%), Gaps = 55/232 (23%)

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNK 251
            +R+ +  N+++  +P      C +L IL L +N L   I +  F  L  L +L L  N 
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 252 FIGEIP-ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ 310
            +  +   +      L  L+L    L  E+           G+              F  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELG---------PGL--------------FRG 127

Query: 311 LSALKILDLSNNSIFGTLPS-CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369
           L+AL+ L L +N++   LP   F         L                  L  L L  N
Sbjct: 128 LAALQYLYLQDNAL-QALPDDTFR-------DLGN----------------LTHLFLHGN 163

Query: 370 RLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
           R+  S+P R    L  L+ LLL  N +    P     L  +  + L  NNLS
Sbjct: 164 RIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 45/238 (18%), Positives = 68/238 (28%), Gaps = 42/238 (17%)

Query: 20  SMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79
           + +++ L  N    +P +         L             H N L              
Sbjct: 33  ASQRIFLHGNRISHVPAAS--FRACRNLTILW--------LHSNVLA------------R 70

Query: 80  IDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLF----GSFR 135
           ID   F         L+  DLS                  L  L L    L     G FR
Sbjct: 71  IDAAAF----TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 136 MPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER 195
                   L  L + +N     +P +    L  L  L L  N  +     +F  +  L+R
Sbjct: 127 ----GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 196 LDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGN 250
           L +  N++   +          L  L L  N   +L     +    L  L  L+L+ N
Sbjct: 182 LLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALA---PLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 49/224 (21%), Positives = 75/224 (33%), Gaps = 44/224 (19%)

Query: 14  SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTS 73
           S     ++  L L +N   +I  +      L+ L+  D             L+   QL S
Sbjct: 51  SFRACRNLTILWLHSNVLARIDAAA--FTGLALLEQLD-------------LSDNAQLRS 95

Query: 74  ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSG----QFPNWLLENNTNLVMLLLANNS 129
           +         TF       H L    L  L+L      +    L      L  L L +N+
Sbjct: 96  VD------PATF-------HGLGR--LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 130 L----FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS 185
           L      +FR       NL  L +  N     +P      L  L  L L +N      P 
Sbjct: 141 LQALPDDTFR----DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 186 SFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229
           +F D+  L  L +  N L+  +P        +L+ L L++N   
Sbjct: 196 AFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           L ++  + L  N L   +P      L  +  L L  N ++      F  L  ++ L L  
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 547 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSY---EGNPFLC 598
           N +   + P     L  L    +  NNLS  +P  A  +      Y     NP++C
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEA-LAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           I  +   I L  N+++            +  L L  N L       F+ L  +E LDLS 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 547 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
           N     + P     L  L    +    L  ++    
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPT-TFSNLKQIESLDLS 545
           L  +  +DLS N     +       L  +H L+L    L   +    F  L  ++ L L 
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 546 YNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
            N L   +P      L  L    +  N +S  +P+RA
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERA 172

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 97.2 bits (242), Expect = 2e-21
 Identities = 77/426 (18%), Positives = 153/426 (35%), Gaps = 30/426 (7%)

Query: 3   LTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHY 62
           L+ N L    IS    ++++ L LS N F  +PI  +   N+S+LK          +S  
Sbjct: 76  LSHNKLVK--ISCHPTVNLKHLDLSFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEKSSV 132

Query: 63  NSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVM 122
             +     L    +   +  G           L++ +   L++     N       ++ +
Sbjct: 133 LPIA---HLNISKVL--LVLGETYGEKEDPEGLQDFNTESLHIV-FPTNKEFHFILDVSV 186

Query: 123 LLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS 182
             +AN  L     +   +  +     ++    +             L ++  + N+F   
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK------LSNLTLNNIETTWNSFIR- 239

Query: 183 IPSSFADMKMLERLDISDNQLTGEIPERMATGCF----SLKILALSNNSLQGHIFSKKFN 238
                     +    IS+ +L G++  R          +L I  + ++            
Sbjct: 240 -ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 239 LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNN 298
            +N+       +          SK      L  S+N L+  +    G+L+ LE + +  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 299 NLE--GPIPIEFCQLSALKILDLSNNSIFGTLP--SCFSPAHIEQVHLSKNKIEGRLESI 354
            L+    I     Q+ +L+ LD+S NS+        C     +  +++S N +   +   
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 355 IHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLID 413
           +     +  LDL  N++  SIP ++ +L  L  L +A N +K  +P  +   L  ++ I 
Sbjct: 419 LPPR--IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474

Query: 414 LSHNNL 419
           L  N  
Sbjct: 475 LHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.2 bits (216), Expect = 4e-18
 Identities = 78/470 (16%), Positives = 147/470 (31%), Gaps = 46/470 (9%)

Query: 118 TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN 177
               +L ++ N +   +   I S   L  L +S+N    ++ + +  +   L  L+LS N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 178 AFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCF----SLKILALSNNSLQGHIF 233
                I         L+ LD+S N     +P       F     LK L LS   L+    
Sbjct: 80  KLV-KIS--CHPTVNLKHLDLSFNAFD-ALPI---CKEFGNMSQLKFLGLSTTHLEKSSV 132

Query: 234 SKKFNLTNLMRLQLDGNKFIGEI-PESLSKCYL--LGGLYLSDNHLSGEIPRWLGNLSAL 290
               +L     L + G  +  +  PE L       L  ++ ++      +   +  ++ L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 291 EGIRMPNN------NLEGPIPIEFCQLSALKILDLSNNSI----FGTLPSCFSPAHIEQV 340
           E   +         +    I  +      L  L L+N       F  +        +   
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 341 HLSKNKIEGRLESIIHDS-----PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYI 395
            +S  K++G+L+    D        L    +  +          +    +N      +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 396 KGEIPVQLCQLKEVRLIDLSHNNLS---GHIPSCLVNT---ALSGGHHEAVAPTSI---- 445
           +    +   ++     +D S+N L+         L       L     + ++  +     
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 446 WCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSY-----YYQGRILTSMSGIDLSCNK 500
                 + IS    S          T    + NMS           +   +  +DL  NK
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK 432

Query: 501 LTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550
           +   IP Q+  L  +  LN++ N L       F  L  ++ + L  N   
Sbjct: 433 IK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.5 bits (214), Expect = 6e-18
 Identities = 71/442 (16%), Positives = 136/442 (30%), Gaps = 61/442 (13%)

Query: 146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG 205
            +D S N    H+P ++         LN+S+N  +    S    +  L  L IS N++  
Sbjct: 4   LVDRSKNGLI-HVPKDLSQKT---TILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 206 EIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKF----IGEIPESLS 261
            +   +      L+ L LS+N L            NL  L L  N F    I +   ++S
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 262 KCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSN 321
           +   L  L LS  HL       + +L+  + + +           E      L+  +  +
Sbjct: 116 Q---LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG-----LQDFNTES 167

Query: 322 NSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDR 381
             I       F       + +S   +     S I             + L     N    
Sbjct: 168 LHIVFPTNKEFHF----ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 382 LPQLNYLLLAHNYI-KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAV 440
              LN +    N   +    V    +    + ++               T+L       V
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283

Query: 441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK 500
                   ++ +Y                                 I ++M+  + + + 
Sbjct: 284 VSDVFGFPQSYIY--------------------------------EIFSNMNIKNFTVSG 311

Query: 501 LTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV- 559
                      +S    L+ S+N LT T+     +L ++E+L L  N L  ++     + 
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMT 370

Query: 560 --LNTLEVFKVAYNNLSGKIPD 579
             + +L+   ++ N++S     
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 5e-17
 Identities = 57/339 (16%), Positives = 105/339 (30%), Gaps = 17/339 (5%)

Query: 95  LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL-FGSFRMPIHSHQNLATLDVSNNF 153
           LK+ DLS              N + L  L L+   L   S     H + +   L +   +
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
                  E    L      +L              D+ +    ++  + +   + +   +
Sbjct: 152 ----GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 214 GCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 273
              S+     +N  L     +      N     L           S+S   L G L   D
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267

Query: 274 NHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFS 333
              SG       +L AL   ++ ++    P    +   S + I + + +        C S
Sbjct: 268 FDYSGT------SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321

Query: 334 -PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI---DRLPQLNYLL 389
             +    +  S N +   +         L TL L  N+L   +        ++  L  L 
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLD 380

Query: 390 LAHNYIKGEIPVQLC-QLKEVRLIDLSHNNLSGHIPSCL 427
           ++ N +  +     C   K +  +++S N L+  I  CL
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.5 bits (196), Expect = 1e-15
 Identities = 70/446 (15%), Positives = 135/446 (30%), Gaps = 57/446 (12%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ 202
               L++S N+    +       L  L  L +S N       S F   + LE LD+S N+
Sbjct: 22  KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 203 LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPESLS 261
           L  +I         +LK L LS N+       K+F N++ L  L L            ++
Sbjct: 81  LV-KISCHPTV---NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 262 KC-YLLGGLYLSDNHLSGEIPRWLGNLSA--LEGIRMPNNNLEGPIPIEFCQLSALKILD 318
                   L L + +   E P  L + +   L  +   N      + +    ++ L++ +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 319 LSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNR 378
           +             S        L  N     L     ++ +   + +     H ++   
Sbjct: 197 IKCVLEDNKCSYFLS----ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 379 IDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHE 438
                 ++ + L       +       LK + +  +  +      P   +    S  + +
Sbjct: 253 -----SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK 305

Query: 439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSC 498
                       +  +S            K     F   + S                  
Sbjct: 306 ------------NFTVS-GTRMVHMLCPSK--ISPFLHLDFSN----------------- 333

Query: 499 NKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTT---FSNLKQIESLDLSYNLLHGKIPP 555
           N LT  +    G+L+ +  L L  N L   +       + +K ++ LD+S N +      
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 556 QLIV-LNTLEVFKVAYNNLSGKIPDR 580
                  +L    ++ N L+  I   
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRC 418

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           +    + +++S N ++    + I  LS +  L +SHN +     + F   +++E LDLS+
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 584
           N L  KI         L+   +++N     +P   +F 
Sbjct: 79  NKLV-KISCHP--TVNLKHLDLSFNAFD-ALPICKEFG 112

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 46/255 (18%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGE------ICAETESHYN 63
             ++ L+   ++    +SN          +  ++ + LK                   Y 
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 64  SLTPKFQLTSISLSG--YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLV 121
             +    + + ++SG   +      K         + D S+  L+         + T L 
Sbjct: 298 IFS-NMNIKNFTVSGTRMVHMLCPSKI----SPFLHLDFSNNLLT-DTVFENCGHLTELE 351

Query: 122 MLLLANNSL------FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS 175
            L+L  N L                 ++L  LD+S N           ++   L+ LN+S
Sbjct: 352 TLILQMNQLKELSKIAEMT----TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 176 RNAFNG---------------------SIPSSFADMKMLERLDISDNQLTGEIPERMATG 214
            N                         SIP     ++ L+ L+++ NQL   +P+ +   
Sbjct: 408 SNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDR 466

Query: 215 CFSLKILALSNNSLQ 229
             SL+ + L  N   
Sbjct: 467 LTSLQKIWLHTNPWD 481

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.4 bits (232), Expect = 4e-20
 Identities = 79/422 (18%), Positives = 143/422 (33%), Gaps = 31/422 (7%)

Query: 17  HLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEI-CAETESHYNSLTPKFQLTSIS 75
               +E L +S+N    I     P+ +L  L     +         + +LT   +LT + 
Sbjct: 98  FNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT---KLTFLG 152

Query: 76  LSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS- 133
           LS             +        DL   ++ G     L   NT ++ L+   NSLF   
Sbjct: 153 LSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212

Query: 134 FRMPIHSHQNLATLDVS-NNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-----SF 187
             M +++  +L   ++  N+     +   +     G   LN++      +         F
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 188 ADMKMLERLDISDNQLTGEIPERMATGCF----SLKILALSNNSLQGHIFSKKFNLTNLM 243
              + +E L+I +  +T  I     T       SL I  + N        +       + 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP 303
              L  +                  L  + N  +  + +    L  L+ + +  N L+  
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN- 391

Query: 304 IPIEFCQLSALKILDLSNNSIFGTLPS------CFSPAHIEQVHLSKNKIEGRLESIIHD 357
                     +  L+  + S+  +L S      C     I  ++LS N + G +   +  
Sbjct: 392 FFKVALMTKNMSSLETLDVSL-NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-- 448

Query: 358 SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPV-QLCQLKEVRLIDLSH 416
            P +  LDL  NR+  SIP  +  L  L  L +A N +K  +P     +L  ++ I L  
Sbjct: 449 PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD 506

Query: 417 NN 418
           N 
Sbjct: 507 NP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.0 bits (205), Expect = 8e-17
 Identities = 80/455 (17%), Positives = 146/455 (32%), Gaps = 70/455 (15%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS-FADMKMLERLDISDN 201
               L +S N     + +   ++L  L  L LS N    S+    F   + LE LD+S N
Sbjct: 53  RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 202 QLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPESL 260
           +L   I         SL+ L LS N        K+F NLT L  L L   KF       +
Sbjct: 111 RLQ-NISCCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 261 SKCYL-LGGLYLSDNHLSGEIPR--WLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKIL 317
           +  +L    L L   H+ G       + N + L  +  PN+     + +    L  L++ 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 318 DLS--------------------------------NNSIFGTLPSCFSPAHIEQVHLSKN 345
           ++                                        L   F P  +E +++   
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 346 KIEGRLESIIHDS-----PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 400
            I  R++             L+   +       S         ++N  +L+ +       
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 401 VQLCQLKEVRLIDLSHNNLS---GHIPSCLVNT---ALSGGHHEAVAPTSIWCGRASVYI 454
           V          ++ + N  +       S L       L     +     ++     S   
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406

Query: 455 SACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSG 514
           +  +   S      + T                  S+  ++LS N LTG +   +     
Sbjct: 407 TLDVSLNSLNSHAYDRTCA-------------WAESILVLNLSSNMLTGSVFRCL--PPK 451

Query: 515 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 549
           +  L+L +N +  +IP   ++L+ ++ L+++ N L
Sbjct: 452 VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 62/377 (16%), Positives = 121/377 (32%), Gaps = 37/377 (9%)

Query: 217 SLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESL-SKCYLLGGLYLS 272
             K L+LS N    L+    S    L+ L  L+L  N+ I  +   +      L  L +S
Sbjct: 53  RTKALSLSQNSISELRMPDISF---LSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVS 108

Query: 273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEG-PIPIEFCQLSALKILDLSNNSIFGTLPSC 331
            N L   I      +++L  + +  N+ +  P+  EF  L+ L  L LS           
Sbjct: 109 HNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 332 FSPAHIEQVHLSKNKI---EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI---DRLPQL 385
            +  H+  + L         G  ES+   +  ++ L    N L     N         QL
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 386 NYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG------HIPSCLVNTALSGGHHEA 439
           + + L     +  +       +   L++++  ++         +        +   +   
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 440 VAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQ---GRILTSMSGIDL 496
           +  T         Y    L         K   ++     +  + +     +   M+   L
Sbjct: 286 LTITERIDREEFTYSETAL---------KSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 497 SCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 556
           S +             S    LN + N  T ++    S LK++++L L  N L       
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKV 395

Query: 557 LIVLNTLEVFKVAYNNL 573
            ++   +   +    +L
Sbjct: 396 ALMTKNMSSLETLDVSL 412

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 64/310 (20%), Positives = 115/310 (37%), Gaps = 20/310 (6%)

Query: 2   SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESH 61
           SL    +  S+ +L HL  +  + L++ +  ++   L  L     L     +    T   
Sbjct: 207 SLFSVQVNMSVNALGHL-QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 62  YNSLTPKFQLT-----SISLSGYIDGGTFPKFLYHQHDLKNADLSHL--NLSGQFPNWLL 114
              L   F        +I      +     +F Y +  LK+  + H+   +       L 
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

Query: 115 ENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNL 174
                + + +L+ +       +   S  +   L+ + N F      +  + L  L  L L
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLIL 384

Query: 175 SRNAFNGSIPSSF---ADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH 231
            RN    +         +M  LE LD+S N L     +R      S+ +L LS+N L G 
Sbjct: 385 QRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 232 IFSKKFNLT-NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPR-WLGNLSA 289
           +F     L   +  L L  N+ I  IP+ ++    L  L ++ N L   +P      L++
Sbjct: 444 VFRC---LPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS 498

Query: 290 LEGIRMPNNN 299
           L+ I + +N 
Sbjct: 499 LQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 49/256 (19%), Positives = 90/256 (35%), Gaps = 24/256 (9%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFD------GEICAETESHYN 63
             L        +E L + N    +     E  ++ + LK+               E+ Y+
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 64  SLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVML 123
                 ++    LS                     + +  N+              L  L
Sbjct: 327 VFA---EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ-NVFTDSVFQGCSTLKRLQTL 382

Query: 124 LLANN---SLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFN 180
           +L  N   + F    M   +  +L TLDVS N  + H       +   ++ LNLS N   
Sbjct: 383 ILQRNGLKNFFKVALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 181 GSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ---GHIFSKKF 237
           GS+         ++ LD+ +N++   IP+ + T   +L+ L +++N L+     +F    
Sbjct: 442 GSVFRCLP--PKVKVLDLHNNRIM-SIPKDV-THLQALQELNVASNQLKSVPDGVFD--- 494

Query: 238 NLTNLMRLQLDGNKFI 253
            LT+L  + L  N + 
Sbjct: 495 RLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT-TFSNLKQIESLDLS 545
           +      + LS N ++      I +LS +  L LSHN +  ++    F   + +E LD+S
Sbjct: 50  LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS 108

Query: 546 YNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 584
           +N L   I      + +L    +++N+    +P   +F 
Sbjct: 109 HNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFG 143

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.9 bits (217), Expect = 3e-18
 Identities = 50/258 (19%), Positives = 95/258 (36%), Gaps = 16/258 (6%)

Query: 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN 225
               +  NL +   + +   +  ++  ++++  +++ +   +         ++  L L+ 
Sbjct: 20  FAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 74

Query: 226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG 285
           N L   I     NL NL  L LD NK I ++  SL     L  L L  N +S +I   L 
Sbjct: 75  NKLT-DIKPLT-NLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 128

Query: 286 NLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKN 345
           +L  LE + + NN +     +   +L+ L  L L +N I   +        ++ ++LSKN
Sbjct: 129 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKN 185

Query: 346 KIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 405
            I   L ++      L  L+L          N    L   N +      +     +    
Sbjct: 186 HIS-DLRALAG-LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

Query: 406 LKEVRLIDLSHNNLSGHI 423
             E   +       +  +
Sbjct: 244 DYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 5e-16
 Identities = 43/240 (17%), Positives = 90/240 (37%), Gaps = 26/240 (10%)

Query: 185 SSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMR 244
                     + ++    +T  + +       S+  +  +N+ ++  +   +  L N+ +
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIK-SVQGIQ-YLPNVTK 69

Query: 245 LQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPI 304
           L L+GNK + +I + L+    LG L+L +N +  ++   L +L  L+ + + +N +    
Sbjct: 70  LFLNGNK-LTDI-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISDIN 125

Query: 305 PIEFCQLSALKILDLSNNSI-----FGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSP 359
            +    L  L+ L L NN I        L        ++ + L  N+I       +    
Sbjct: 126 GLV--HLPQLESLYLGNNKITDITVLSRLTK------LDTLSLEDNQISD--IVPLAGLT 175

Query: 360 YLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 419
            L  L LS N +   +   +  L  L+ L L       +       L     +  +  +L
Sbjct: 176 KLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 1e-13
 Identities = 51/284 (17%), Positives = 95/284 (33%), Gaps = 33/284 (11%)

Query: 92  QHDLKNADLSHLNLSGQFPNWL-----LENNTNLVMLLLANNSLFGSFRMPIHSHQNLAT 146
           Q++L +  +  +  +    + +     ++   N+  L L  N L  +   P+ + +NL  
Sbjct: 39  QNELNS--IDQIIANN---SDIKSVQGIQYLPNVTKLFLNGNKL--TDIKPLTNLKNLGW 91

Query: 147 LDVSNNFFHGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG 205
           L +  N     I  +     L  L  L+L  N  +  I +    +  LE L + +N++T 
Sbjct: 92  LFLDEN----KIKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT- 144

Query: 206 EIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYL 265
           +I     +    L  L+L +N +          LT L  L L  N  I ++  +L+    
Sbjct: 145 DITVL--SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKN 198

Query: 266 LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325
           L  L L       +      NL     ++  + +L  P  I           D    ++ 
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG-------DYEKPNVK 251

Query: 326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369
             LP   +                         P      +SY+
Sbjct: 252 WHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYD 295

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 40/195 (20%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
           T +  L +L ++  L L  N   +I   L  L +L KLK+            +N      
Sbjct: 78  TDIKPLTNLKNLGWLFLDEN---KI-KDLSSLKDLKKLKSLSL--------EHN------ 119

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
            ++ I+             L H   L++  L +  ++       L   T L  L L +N 
Sbjct: 120 GISDIN------------GLVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQ 164

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPSSFA 188
           +  S  +P+     L  L +S N    HI  +     L  L  L L          +  +
Sbjct: 165 I--SDIVPLAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 189 DMKMLERLDISDNQL 203
           ++ +   +  +D  L
Sbjct: 219 NLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           L  +  + L  N ++ +I   + +L  + +L L +N +T    T  S L ++++L L  N
Sbjct: 108 LKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 163

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLS 574
            +   I P L  L  L+   ++ N++S
Sbjct: 164 QIS-DIVP-LAGLTKLQNLYLSKNHIS 188

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 36/189 (19%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISDN 201
           +  TL +        IP    + LP +  + +S +     + S SF ++  +  ++I + 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 202 QLTGEIPERMATGCFSLKILALSNNSLQGHI--FSKKFNLTNLMRLQLDGNKFIGEIPES 259
           +    I          LK L + N  L+      +K ++      L++  N ++  IP +
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 260 L--SKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQL-SALK 315
                C     L L +N  +  +  +  N + L+ + +  N     I  + F  + S   
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 316 ILDLSNNSI 324
           +LD+S  S+
Sbjct: 209 LLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 33/228 (14%)

Query: 182 SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN----SLQGHIFSKKF 237
           S+P S       + L + +  L   IP    +   ++  + +S +     L+ H F    
Sbjct: 28  SLPPS------TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--- 77

Query: 238 NLTNLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNHLSGEIP--RWLGNLSALEGIR 294
           NL+ +  +++   + +  I  ++L +  LL  L + +  L    P    + +      + 
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136

Query: 295 MPNNNLEGPIPIE-FCQLSA-LKILDLSNNSIFGTLPSC-FSPAHIEQVHLSKNKIEGRL 351
           + +N     IP+  F  L      L L NN    ++    F+   ++ V+L+KNK    L
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNK---YL 192

Query: 352 ESIIHDS-----PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNY 394
             I  D+          LD+S   +  ++P++   L  L  L+  + +
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 45/244 (18%), Positives = 81/244 (33%), Gaps = 45/244 (18%)

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNK 251
            E   ++   +   IP        S + L L    L+  I S  F NL N+ R+ +  + 
Sbjct: 13  EEDFRVTCKDIQ-RIPSLPP----STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV 66

Query: 252 FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQ 310
            + ++                             NLS +  I + N      I  +   +
Sbjct: 67  TLQQLESHS-----------------------FYNLSKVTHIEIRNTRNLTYIDPDALKE 103

Query: 311 LSALKILDLSNNSI--FGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDS-----PYLVT 363
           L  LK L + N  +  F  L   +S      + ++ N     + SI  ++        +T
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP---YMTSIPVNAFQGLCNETLT 160

Query: 364 LDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ--LKEVRLIDLSHNNLSG 421
           L L  N    S+        +L+ + L  N     I             L+D+S  +++ 
Sbjct: 161 LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218

Query: 422 HIPS 425
            +PS
Sbjct: 219 ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 35/194 (18%), Positives = 70/194 (36%), Gaps = 33/194 (17%)

Query: 70  QLTSISLSG-----YIDGGTFPKFLYHQHDLKNADLSHLNLSG-----QFPNWLLENNTN 119
            ++ I +S       ++  +F       ++L    ++H+ +             L+    
Sbjct: 56  NISRIYVSIDVTLQQLESHSF-------YNLSK--VTHIEIRNTRNLTYIDPDALKELPL 106

Query: 120 LVMLLLANNSL--FGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPG-LMDLNLSR 176
           L  L + N  L  F      ++S      L++++N +   IPV     L    + L L  
Sbjct: 107 LKFLGIFNTGLKMFPDLTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 177 NAFNGSIPSS-FADMKMLERLDISDNQLTGEIPERMATGCFS-LKILALSNN---SLQGH 231
           N F  S+    F   K L+ + ++ N+    I +    G +S   +L +S     +L   
Sbjct: 166 NGFT-SVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223

Query: 232 IFSKKFNLTNLMRL 245
                 +L  L+  
Sbjct: 224 GLE---HLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 32/167 (19%)

Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNN 322
           C+      ++   +   IP    +   L   ++   +L       F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 323 SIFGTLPS-CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-D 380
                L S  F        +LSK                +  +++   R    I      
Sbjct: 66  VTLQQLESHSFY-------NLSK----------------VTHIEIRNTRNLTYIDPDALK 102

Query: 381 RLPQLNYLLLAHNYIKGEIP--VQLCQLKEVRLIDLSHNNLSGHIPS 425
            LP L +L + +  +K   P   ++       +++++ N     IP 
Sbjct: 103 ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 53/242 (21%), Positives = 96/242 (39%), Gaps = 40/242 (16%)

Query: 183 IPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNL 239
           +P S       + LD+S N L   +          L++L LS     +++   +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 240 TNLMRLQLDGNKFIGEIPESL-SKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNN 298
           ++L  L L GN  I  +     S    L  L   + +L+      +G+L  L+ + + +N
Sbjct: 76  SHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 299 NL-EGPIPIEFCQLSALKILDLSNNSIFGTLPS-CFSPAHIEQVHLSKNKIEGRLESIIH 356
            +    +P  F  L+ L+ LDLS+N I  ++              L +  +         
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLR-------VLHQMPL--------- 177

Query: 357 DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLS 415
                ++LDLS N ++  I     +  +L  L L  N +K  +P  +   L  ++ I L 
Sbjct: 178 ---LNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 232

Query: 416 HN 417
            N
Sbjct: 233 TN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 14/207 (6%)

Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN---SL 228
           L+LS N        SF     L+ LD+S  ++   I +        L  L L+ N   SL
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 229 QGHIFSKKFNLTNLMRLQLDGNKFIGEIPESL-SKCYLLGGLYLSDNHL-SGEIPRWLGN 286
               FS    L++L +L       +  +          L  L ++ N + S ++P +  N
Sbjct: 92  ALGAFS---GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 287 LSALEGIRMPNNNLEGPIPIEFCQLSALKI----LDLSNNSIFGTLPSCFSPAHIEQVHL 342
           L+ LE + + +N ++     +   L  + +    LDLS N +    P  F    ++++ L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 343 SKNKIEGRLESIIHDSPYLVTLDLSYN 369
             N+++   + I      L  + L  N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 15/167 (8%)

Query: 269 LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQLSALKILDLSNNSIFGT 327
           L LS N L         +   L+ + +    ++  I    +  LS L  L L+ N I  +
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI-QS 90

Query: 328 LPS-CFS-PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNR--IDRLP 383
           L    FS  + ++++   +  +       I     L  L++++N +  S         L 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLT 149

Query: 384 QLNYLLLAHNYIKGEIPVQ----LCQLKEVRL-IDLSHNNLSGHIPS 425
            L +L L+ N I+  I       L Q+  + L +DLS N ++  I  
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 51/242 (21%), Positives = 75/242 (30%), Gaps = 65/242 (26%)

Query: 17  HLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISL 76
               ++ L LS      I        +LS L T             N       + S++ 
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLI--------LTGN------PIQSLA- 92

Query: 77  SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRM 136
                 G F               S L              ++L  L+    +L      
Sbjct: 93  -----LGAF---------------SGL--------------SSLQKLVAVETNLASLENF 118

Query: 137 PIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLE- 194
           PI   + L  L+V++N        E  + L  L  L+LS N    SI       +  +  
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPL 177

Query: 195 ---RLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLD 248
               LD+S N +   I          LK LAL  N   S+   IF     LT+L ++ L 
Sbjct: 178 LNLSLDLSLNPMN-FIQPGAFKE-IRLKELALDTNQLKSVPDGIFD---RLTSLQKIWLH 232

Query: 249 GN 250
            N
Sbjct: 233 TN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 46/234 (19%), Positives = 73/234 (31%), Gaps = 63/234 (26%)

Query: 364 LDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPV----QLCQLKEVRLIDLSHNNL 419
           LDLS+N L           P+L  L L+   I+  I       L  L     + L+ N +
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLST---LILTGNPI 88

Query: 420 S---GHIPSCLVN-TALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFT 475
                   S L +   L                 AS      L +               
Sbjct: 89  QSLALGAFSGLSSLQKLVAVE----------TNLAS------LENFPI------------ 120

Query: 476 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY---LSGIHALNLSHNNLTGTIPT- 531
                       L ++  ++++ N +         Y   L+ +  L+LS N +  +I   
Sbjct: 121 ----------GHLKTLKELNVAHNLIQ-SFKLP-EYFSNLTNLEHLDLSSNKIQ-SIYCT 167

Query: 532 TFSNLKQIE----SLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 581
               L Q+     SLDLS N ++  I P       L+   +  N L   +PD  
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGI 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.1 bits (195), Expect = 5e-16
 Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 22/261 (8%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ 202
           +        +     IP ++       ++L             +F+    LE+++IS N 
Sbjct: 10  SNRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 203 LTGEIPERMATGCFSLKILALSNN----SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE 258
           +   I   + +    L  + +        +    F    NL NL  L +     I  +P 
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTG-IKHLP- 120

Query: 259 SLSKCYL--LGGLYLSDNHLSGEIP-RWLGNLSA-LEGIRMPNNNLEGPIPIEFCQLSAL 314
            + K +      L + DN     I       LS     + +  N ++      F      
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 315 KILDLSNNSIFGTLPSCFSPA-HIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHG 373
           ++    NN++       F  A     + +S+ +I       + +   L        +   
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK--- 237

Query: 374 SIPNRIDRLPQLNYLLLAHNY 394
            +P  +++L  L    L +  
Sbjct: 238 KLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 34/235 (14%)

Query: 196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFIG 254
               ++++T EIP  +     +   L      L+  I    F    +L ++++  N  + 
Sbjct: 14  FLCQESKVT-EIPSDLPR---NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 255 EIPES-LSKCYLLGGLYLSD-NHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLS 312
            I     S    L  + +   N+L    P    NL  L+ + + N  ++    +      
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
              +LD+ +N    T+                        S +  S   V L L+ N + 
Sbjct: 129 QKVLLDIQDNINIHTIER---------------------NSFVGLSFESVILWLNKNGIQ 167

Query: 373 GSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPS 425
             I N   +        L  +N ++ E+P  +        ++D+S   +   +PS
Sbjct: 168 -EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 8e-09
 Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 21/214 (9%)

Query: 70  QLTSISLSG-----YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLL 124
            L  I +S       I+   F     +   L    +   N          +N  NL  LL
Sbjct: 55  DLEKIEISQNDVLEVIEADVF----SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110

Query: 125 LANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPG-LMDLNLSRNAFNGSI 183
           ++N  +     +          LD+ +N     I       L    + L L++N      
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 184 PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLT 240
            S+F   ++ E     +N L  E+P  +  G     IL +S     SL  +      NL 
Sbjct: 171 NSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLK 226

Query: 241 NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274
            L        K +     +L K   L    L+  
Sbjct: 227 KLRARSTYNLKKLP----TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 494 IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 553
                +K+T EIP+ +        L      L       FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 554 PPQ----LIVLNTLEVFKVAYNNLSGKIPDRA 581
                  L  L+ + + K   NNL   I   A
Sbjct: 71  EADVFSNLPKLHEIRIEK--ANNLL-YINPEA 99

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 9e-16
 Identities = 44/259 (16%), Positives = 89/259 (34%), Gaps = 28/259 (10%)

Query: 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN 225
           L   + +   ++        + AD+  +  L      +T  I         +L  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKD 72

Query: 226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG 285
           N +     +   NLT +  L+L GN  +  +  +++    +  L L+   ++   P  L 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 286 NLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI-----FGTLPSCFSPAHIEQV 340
            LS L+ + +  N +    P+    L+ L+ L + N  +        L        +  +
Sbjct: 127 GLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVSDLTPLANLSK------LTTL 178

Query: 341 HLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 400
               NKI     S +   P L+ + L  N++    P  +     L  + L +  I  +  
Sbjct: 179 KADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234

Query: 401 VQLCQLKEVRLIDLSHNNL 419
                L    ++       
Sbjct: 235 FYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 39/238 (16%), Positives = 88/238 (36%), Gaps = 28/238 (11%)

Query: 188 ADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL 247
             +    ++    + +T  + +        +  L+     +          L NL+ L+L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLD---GITTLSAFGTGVTT--IEGVQYLNNLIGLEL 70

Query: 248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE 307
             N+ I ++   L     +  L LS N L       +  L +++ + + +  +    P+ 
Sbjct: 71  KDNQ-ITDLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLA 126

Query: 308 FCQLSALKILDLSNNSI-----FGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLV 362
              LS L++L L  N I        L +      ++ + +   ++     + + +   L 
Sbjct: 127 --GLSNLQVLYLDLNQITNISPLAGLTN------LQYLSIGNAQVSD--LTPLANLSKLT 176

Query: 363 TLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
           TL    N++   I   +  LP L  + L +N I    P  L     + ++ L++  ++
Sbjct: 177 TLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 45/313 (14%), Positives = 105/313 (33%), Gaps = 55/313 (17%)

Query: 238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297
            L N +++    +  + +   + +    +  L      ++      +  L+ L G+ + +
Sbjct: 17  ALANAIKIAAGKSN-VTDT-VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHD 357
           N +    P++   L+ +  L+LS N +   + +      I+ + L+  +I     + +  
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITD--VTPLAG 127

Query: 358 SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 417
              L  L L  N++  +I   +  L  L YL + +  +    P  L  L ++  +    N
Sbjct: 128 LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183

Query: 418 NLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTK 477
            +S  I        L            +      +            P+           
Sbjct: 184 KIS-DISPLASLPNL----------IEVHLKNNQI--------SDVSPLAN--------- 215

Query: 478 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI-PTTFSNL 536
                      +++  + L+   +T +    + Y + +   N+        I P T S+ 
Sbjct: 216 ----------TSNLFIVTLTNQTITNQ---PVFYNNNLVVPNVVKGPSGAPIAPATISDN 262

Query: 537 KQIESLDLSYNLL 549
               S +L++NL 
Sbjct: 263 GTYASPNLTWNLT 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 52/297 (17%), Positives = 102/297 (34%), Gaps = 47/297 (15%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
             +     L +  K+    ++            +L  + T                    
Sbjct: 10  NVIFPDPALANAIKIAAGKSNV----TDTVTQADLDGITTLSAFGT-------------- 51

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
            +T+I              + + ++L   +L    ++   P   L+N T +  L L+ N 
Sbjct: 52  GVTTIE------------GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP 96

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 189
           L       I   Q++ TLD+++       P+     L  L  L L  N    +  S  A 
Sbjct: 97  LKNVS--AIAGLQSIKTLDLTSTQITDVTPLA---GLSNLQVLYLDLNQI--TNISPLAG 149

Query: 190 MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDG 249
           +  L+ L I + Q++   P         L  L   +N +     S   +L NL+ + L  
Sbjct: 150 LTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204

Query: 250 NKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPI 306
           N+ I ++   L+    L  + L++  ++ +   +  NL     ++ P+     P  I
Sbjct: 205 NQ-ISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 47/235 (20%), Positives = 85/235 (36%), Gaps = 22/235 (9%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETE-SHYNSLTPK 68
           T++  + +L ++  L L +N   QI   L PL NL+K+   +         S    L   
Sbjct: 54  TTIEGVQYLNNLIGLELKDN---QI-TDLAPLKNLTKITELELSGNPLKNVSAIAGLQ-- 107

Query: 69  FQLTSISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLAN 127
             + ++ L+   I   T    L    +L+   L    ++   P   L   TNL  L + N
Sbjct: 108 -SIKTLDLTSTQI---TDVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGN 160

Query: 128 NSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF 187
             +  S   P+ +   L TL   +N      P+     LP L++++L  N    S  S  
Sbjct: 161 AQV--SDLTPLANLSKLTTLKADDNKISDISPLA---SLPNLIEVHLKNNQI--SDVSPL 213

Query: 188 ADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNL 242
           A+   L  + +++  +T +             +   S   +     S      + 
Sbjct: 214 ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 16/230 (6%)

Query: 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN 225
               +  NL + +       +  ++  ++++  +++ +   +         ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 77

Query: 226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG 285
           N L   I     NL NL  L LD NK + ++  SL     L  L L  N +S +I   L 
Sbjct: 78  NKLT-DIKPLA-NLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 286 NLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKN 345
           +L  LE + + NN +     +   +L+ L  L L +N I   +        ++ ++LSKN
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188

Query: 346 KIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYI 395
            I   L ++      L  L+L          N    L   N +      +
Sbjct: 189 HIS-DLRALAG-LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 40/228 (17%)

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKF 252
             + ++    +T  + +       S+  +  +N+ ++         L N+ +L L+GNK 
Sbjct: 26  TIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNK- 79

Query: 253 IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLS 312
           + +I + L+    LG L+L +N +  ++   L +L  L+ + + +N +     +    L 
Sbjct: 80  LTDI-KPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDINGLV--HLP 134

Query: 313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
            L+ L L NN I                      I       +     L TL L  N++ 
Sbjct: 135 QLESLYLGNNKI--------------------TDITV-----LSRLTKLDTLSLEDNQIS 169

Query: 373 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
             I   +  L +L  L L+ N+I  ++   L  LK + +++L      
Sbjct: 170 -DIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 44/218 (20%), Positives = 83/218 (38%), Gaps = 20/218 (9%)

Query: 92  QHDLKNADLSHLNLSGQFPNWL--LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV 149
           Q++L +  +  +  +      +  ++   N+  L L  N L  +   P+ + +NL  L +
Sbjct: 42  QNELNS--IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKPLANLKNLGWLFL 97

Query: 150 SNNFFHGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIP 208
             N     +  +     L  L  L+L  N  +  I +    +  LE L + +N++T +I 
Sbjct: 98  DEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DIT 150

Query: 209 ERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGG 268
               +    L  L+L +N +          LT L  L L  N  I ++  +L+    L  
Sbjct: 151 VL--SRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDV 204

Query: 269 LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPI 306
           L L       +      NL     ++  + +L  P  I
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 45/272 (16%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
           T  ++   L S++++I +N+       S++ +  L  +             + N      
Sbjct: 37  TDAVTQNELNSIDQIIANNSDI----KSVQGIQYLPNVTKLFL--------NGN------ 78

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
           +LT I              L +  +L    L    +     +  L++   L  L L +N 
Sbjct: 79  KLTDIK------------PLANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNG 123

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIP-VEIGTYLPGLMDLNLSRNAFNGSIPSSFA 188
           +  S    +     L +L + NN     I  + + + L  L  L+L  N  +  I    A
Sbjct: 124 I--SDINGLVHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQIS-DI-VPLA 175

Query: 189 DMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLD 248
            +  L+ L +S N ++ ++      G  +L +L L +        + + NL     ++  
Sbjct: 176 GLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 249 GNKFIGEIPESLSKCYLLGGLYLSDNHLSGEI 280
               +     S    Y    +       + E+
Sbjct: 233 DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 118 TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN 177
            +  +L L+ N L+      +  +  L  L++        + V+    LP L  L+LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGT--LPVLGTLDLSHN 87

Query: 178 AFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFS 234
               S+P     +  L  LD+S N+LT  +P     G   L+ L L  N   +L   + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 235 KKFNLTNLMRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSAL 290
                  L +L L  N  + E+P      L     L  L L +N L   IP+       L
Sbjct: 146 P---TPKLEKLSLANNN-LTELPAGLLNGLEN---LDTLLLQENSLYT-IPKGFFGSHLL 197

Query: 291 EGIRMPNN 298
               +  N
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 18/207 (8%)

Query: 217 SLKILALSNNSLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 273
           S   +     +L      +        +   L L  N        +L     L  L L  
Sbjct: 11  SHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 274 NHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPS-CF 332
             L+ ++    G L  L  + + +N L+  +P+    L AL +LD+S N +  +LP    
Sbjct: 65  AELT-KLQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL-TSLPLGAL 120

Query: 333 -SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLL 390
                +++++L  N+++     ++  +P L  L L+ N L   +P  + + L  L+ LLL
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179

Query: 391 AHNYIKGEIPVQLCQLKEVRLIDLSHN 417
             N +   IP        +    L  N
Sbjct: 180 QENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 311 LSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNR 370
           +++   ++    ++   LP    P     +HLS+N +     + +     L  L+L    
Sbjct: 9   VASHLEVNCDKRNL-TALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 371 LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
           L   +      LP L  L L+HN ++  +P+    L  + ++D+S N L+
Sbjct: 67  L-TKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           L  +  +DLS N+L   +P     L  +  L++S N LT         L +++ L L  N
Sbjct: 76  LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 548 LL 549
            L
Sbjct: 135 EL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 484 QGRILTSM-SGI-------DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSN 535
             R LT++   +        LS N L       +   + +  LNL    LT  +      
Sbjct: 18  DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGT 75

Query: 536 LKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 581
           L  + +LDLS+N L   +P     L  L V  V++N L+  +P  A
Sbjct: 76  LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.5 bits (181), Expect = 6e-14
 Identities = 61/383 (15%), Positives = 129/383 (33%), Gaps = 59/383 (15%)

Query: 94  DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL-------FGSFRMPIHSHQNLAT 146
           D+++ D+    LS      LL       ++ L +  L         S    +  +  LA 
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA---LRVNPALAE 60

Query: 147 LDVSNNFFHGHIPVEIGTYL----PGLMDLNLSRNAFN----GSIPSSFADMKMLERLDI 198
           L++ +N         +   L      +  L+L          G + S+   +  L+ L +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 199 SDNQLTGE----IPERMATGCFSLKILALSNNSLQ----GHIFSKKFNLTNLMRLQLDGN 250
           SDN L       + E +      L+ L L   SL       + S      +   L +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 251 KFIGE----IPESLSKCYL-LGGLYLSDNHLSGE----IPRWLGNLSALEGIRMPNNNLE 301
                    + + L      L  L L    ++ +    +   + + ++L  + + +N L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 302 GPIPIEFCQ-----LSALKILDLSNNSIFGTLPSCFSPA-----HIEQVHLSKNKIEGR- 350
                E C       S L+ L +    I                 ++++ L+ N++    
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 351 ----LESIIHDSPYLVTLDLSYNRLHG----SIPNRIDRLPQLNYLLLAHNYIKGEIPVQ 402
                E+++     L +L +              + + +   L  L +++N ++     +
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 403 LCQ-LKEV----RLIDLSHNNLS 420
           LCQ L +     R++ L+  ++S
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.8 bits (156), Expect = 7e-11
 Identities = 79/456 (17%), Positives = 134/456 (29%), Gaps = 96/456 (21%)

Query: 142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFN----GSIPSSFADMKMLERLD 197
            ++ +LD+           E+   L     + L            I S+      L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 198 ISDNQLTGE----IPERMATGCFSLKILALSNNSLQ----GHIFSKKFNLTNLMRLQLDG 249
           +  N+L       + + + T    ++ L+L N  L     G + S    L  L  L L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 250 NKFIGEIPESLSKCYL-----LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPI 304
           N       + L +  L     L  L L    LS      L   S L              
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA--SVLR------------- 167

Query: 305 PIEFCQLSALKILDLSNNSI--------FGTLPSCFSPAHIEQVHLSKNKIEGR----LE 352
                     K L +SNN I           L    SP  +E + L    +       L 
Sbjct: 168 -----AKPDFKELTVSNNDINEAGVRVLCQGLKD--SPCQLEALKLESCGVTSDNCRDLC 220

Query: 353 SIIHDSPYLVTLDLSYNRLHGS-----IPNRIDRLPQLNYLLLAHNYIKGE----IPVQL 403
            I+     L  L L  N+L         P  +    +L  L +    I  +    +   L
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 404 CQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSA 463
              + ++ + L+ N L              G            C   S+++ +C      
Sbjct: 281 RAKESLKELSLAGNELGD-----------EGARLLCETLLEPGCQLESLWVKSC------ 323

Query: 464 PPMGKEETVQFTTKNMSYYYQG-RILTSMSGIDLSCNKLTGEIPTQIG-----YLSGIHA 517
                     FT    S++         +  + +S N+L      ++        S +  
Sbjct: 324 ---------SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374

Query: 518 LNLSHNNLT----GTIPTTFSNLKQIESLDLSYNLL 549
           L L+  +++     ++  T      +  LDLS N L
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 61/370 (16%), Positives = 100/370 (27%), Gaps = 85/370 (22%)

Query: 96  KNADLSHLNLSG---------QFPNWLLENNTNLVMLLLANNSL----FGSFRMPIHSHQ 142
               L  L+LS               LL+    L  L L   SL           + +  
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 143 NLATLDVSNNFFHGHIPVE-IGTYLP----GLMDLNLSRNAFN----GSIPSSFADMKML 193
           +   L VSNN       V  +   L      L  L L            +    A    L
Sbjct: 171 DFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 194 ERLDISDNQLTGE----IPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDG 249
             L +  N+L       +   +      L+ L +    +                     
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI--------------------T 269

Query: 250 NKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC 309
            K  G++   L     L  L L+ N L  E     G     E +  P             
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDE-----GARLLCETLLEPG------------ 312

Query: 310 QLSALKILDLSNNSIFGTLPSCFSPA-----HIEQVHLSKNKIEGR-----LESIIHDSP 359
               L+ L + + S      S FS        + ++ +S N++E        + +     
Sbjct: 313 --CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370

Query: 360 YLVTLDLSYNRLH----GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV-----R 410
            L  L L+   +      S+   +     L  L L++N +     +QL +          
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 430

Query: 411 LIDLSHNNLS 420
            + L     S
Sbjct: 431 QLVLYDIYWS 440

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 18/183 (9%)

Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ-- 229
           L+L  N  +     +F  +  L  L ++DN+L   +P  +     +L+ L +++N LQ  
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 230 -GHIFSKKFNLTNLMRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGEIPRWL 284
              +F     L NL  L+LD N+ +  +P     SL+K   L  L L  N L   +P+ +
Sbjct: 101 PIGVFD---QLVNLAELRLDRNQ-LKSLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGV 152

Query: 285 -GNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSP-AHIEQVHL 342
              L++L+ +R+ NN L+      F +L+ LK L L NN +       F     ++ + L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 343 SKN 345
            +N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 57/228 (25%), Positives = 89/228 (39%), Gaps = 58/228 (25%)

Query: 182 SIPSS-FADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ---GHIFSKKF 237
           +IPS+  AD    ++LD+  N+L+  +P +       L++L L++N LQ     IF +  
Sbjct: 30  AIPSNIPAD---TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-- 83

Query: 238 NLTNLMRLQLDGNKFIGEIP----ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGI 293
            L NL  L +  NK +  +P    + L     L  L L  N L   +P           +
Sbjct: 84  -LKNLETLWVTDNK-LQALPIGVFDQLVN---LAELRLDRNQLK-SLP---------PRV 128

Query: 294 RMPNNNLEGPIPIEFCQLSALKILDLSNNSI-------FGTLPSCFSPAHIEQVHLSKNK 346
                         F  L+ L  L L  N +       F  L S      ++++ L  N+
Sbjct: 129 --------------FDSLTKLTYLSLGYNELQSLPKGVFDKLTS------LKELRLYNNQ 168

Query: 347 IEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHN 393
           ++   E        L TL L  N+L   +P    D L +L  L L  N
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 14/183 (7%)

Query: 238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297
            L N ++  L     + ++  S  +   +      ++++   +   +   + L+ + + +
Sbjct: 17  GLANAVKQNLGKQS-VTDL-VSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSH 72

Query: 298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHD 357
           N +    P++   L+ L+ L ++ N +     +    A + ++ L  N++    +S+IH 
Sbjct: 73  NQISDLSPLK--DLTKLEELSVNRNRL--KNLNGIPSACLSRLFLDNNELR-DTDSLIH- 126

Query: 358 SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 417
              L  L +  N+L  SI   +  L +L  L L  N I       L +LK+V  IDL+  
Sbjct: 127 LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

Query: 418 NLS 420
              
Sbjct: 183 KCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 33/201 (16%), Positives = 74/201 (36%), Gaps = 15/201 (7%)

Query: 188 ADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL 247
             +    + ++    +T  + ++  +    ++     N+++Q    +     TNL  L L
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQKELS---GVQNFNGDNSNIQ--SLAGMQFFTNLKELHL 70

Query: 248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE 307
             N+ I ++   L     L  L ++ N L   +   + +   L  + + NN L     + 
Sbjct: 71  SHNQ-ISDL-SPLKDLTKLEELSVNRNRLK-NLNG-IPSAC-LSRLFLDNNELRDTDSLI 125

Query: 308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLS 367
              L  L+IL + NN +  ++      + +E + L  N+I       +     +  +DL+
Sbjct: 126 --HLKNLEILSIRNNKL-KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLT 180

Query: 368 YNRLHGSIPNRIDRLPQLNYL 388
             +           L   N +
Sbjct: 181 GQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 23/209 (11%)

Query: 114 LENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLN 173
                N V   L   S+  +  +       +   +  N+       ++   +   L +L+
Sbjct: 15  DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAGMQ---FFTNLKELH 69

Query: 174 LSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIF 233
           LS N    S  S   D+  LE L ++ N+L   +          L  L L NN L+    
Sbjct: 70  LSHN--QISDLSPLKDLTKLEELSVNRNRLK-NLN---GIPSACLSRLFLDNNELRD--T 121

Query: 234 SKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGI 293
               +L NL  L +  NK +  I   L     L  L L  N ++      L  L  +  I
Sbjct: 122 DSLIHLKNLEILSIRNNK-LKSI-VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177

Query: 294 RMPNNNLEGPIPIEFCQLSALKILDLSNN 322
            +               +     L ++N 
Sbjct: 178 DLTGQ------KCVNEPVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 43/213 (20%), Positives = 72/213 (33%), Gaps = 40/213 (18%)

Query: 95  LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFF 154
           ++N +  + N+        ++  TNL  L L++N +  S   P+     L  L V+ N  
Sbjct: 43  VQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRN-- 95

Query: 155 HGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATG 214
              +    G     L  L L  N        S   +K LE L I +N+L           
Sbjct: 96  --RLKNLNGIPSACLSRLFLDNN--ELRDTDSLIHLKNLEILSIRNNKLK---------- 141

Query: 215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274
                I+ L               L+ L  L L GN+ I      L++   +  + L+  
Sbjct: 142 ----SIVMLGF-------------LSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQ 182

Query: 275 HLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE 307
               E  ++   L     ++ P+     P  I 
Sbjct: 183 KCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH 356
              +    P     L+     +L   S+   L S    + ++  +   + I+  L   + 
Sbjct: 6   PTPINQVFPDP--GLANAVKQNLGKQSV-TDLVSQKELSGVQNFNGDNSNIQ-SLAG-MQ 60

Query: 357 DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 416
               L  L LS+N++   +   +  L +L  L +  N +K    +    L     + L +
Sbjct: 61  FFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSR---LFLDN 115

Query: 417 NNLS 420
           N L 
Sbjct: 116 NELR 119

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 31/173 (17%), Positives = 62/173 (35%), Gaps = 17/173 (9%)

Query: 180 NGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNL 239
           + +   + A M  L  + +++  +T       A    ++K L ++N       ++    L
Sbjct: 33  SSTANITEAQMNSLTYITLANINVTDLTGIEYAH---NIKDLTINNIHATN--YNPISGL 87

Query: 240 TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNN 299
           +NL RL++ G     +   +LS    L  L +S +     I   +  L  +  I +  N 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 300 LEGPIPIEFCQLSALKILDLSNNSI-----FGTLPSCFSPAHIEQVHLSKNKI 347
               I      L  LK L++  + +         P       + Q++     I
Sbjct: 148 AITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPK------LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 31/183 (16%)

Query: 238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297
                +   L  +         ++    L  + L++ +++      +     ++ + + N
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHD 357
            +     PI    LS L+ L +    +        S        L+              
Sbjct: 76  IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLS-------GLTS------------- 113

Query: 358 SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 417
              L  LD+S++    SI  +I+ LP++N + L++N    +I   L  L E++ +++  +
Sbjct: 114 ---LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFD 169

Query: 418 NLS 420
            + 
Sbjct: 170 GVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 13/126 (10%)

Query: 305 PIEFCQLSALKILDLSNNSI-----FGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSP 359
            I   Q+++L  + L+N ++          +      I+ + ++         + I    
Sbjct: 37  NITEAQMNSLTYITLANINVTDLTGIEYAHN------IKDLTINNIHATN--YNPISGLS 88

Query: 360 YLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 419
            L  L +    +       +  L  L  L ++H+     I  ++  L +V  IDLS+N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 420 SGHIPS 425
              I  
Sbjct: 149 ITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           L+++  + +    +T +    +  L+ +  L++SH+    +I T  + L ++ S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLS 574
                I P L  L  L+   + ++ + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 28/206 (13%), Positives = 69/206 (33%), Gaps = 35/206 (16%)

Query: 1   MSLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETES 60
           ++  +    T+ I+   + S+  + L+N     +   L  +     +K            
Sbjct: 26  LNGLLGQSSTANITEAQMNSLTYITLANI---NV-TDLTGIEYAHNIKDLT--------I 73

Query: 61  HYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNL 120
           +          T+ +             +    +L+   +   +++       L   T+L
Sbjct: 74  NNI------HATNYN------------PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSL 114

Query: 121 VMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFN 180
            +L +++++   S    I++   + ++D+S N     I       LP L  LN+  +  +
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVH 172

Query: 181 GSIPSSFADMKMLERLDISDNQLTGE 206
                   D   L +L      + G+
Sbjct: 173 DY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
             ++  + ++    T   P  I  LS +  L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKI 577
                I  ++  L  +    ++YN     I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 547
           + S++ I L+   +T ++ T I Y   I  L +++ + T   P   S L  +E L +   
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 579
            +     P L  L +L +  ++++     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 50/186 (26%), Positives = 72/186 (38%), Gaps = 37/186 (19%)

Query: 99  DLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHI 158
           DLSH NLS     W     TNL  LLL++N L                           I
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-------------------------NFI 79

Query: 159 PVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISDNQLTGEIPERMATGCFS 217
             E    +P L  L+LS N  + ++    F+D++ LE L + +N +   +          
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQ 137

Query: 218 LKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE----SLSKCYLLGGLY 270
           L+ L LS N        +      L  LM L L  NK + ++P      L   ++  GLY
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPA-WVKNGLY 195

Query: 271 LSDNHL 276
           L +N L
Sbjct: 196 LHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 12/159 (7%)

Query: 269 LYLSDNHLSGEIPRW-LGNLSALEGIRMPNNNLEGPIPIE-FCQLSALKILDLSNNSIFG 326
           L LS N+LS     W    L+ L  + + +N+L   I  E F  +  L+ LDLS+N +  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHL-H 101

Query: 327 TLPS-CFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI----D 380
           TL    FS    +E + L  N I     +   D   L  L LS N++    P  +    +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN 160

Query: 381 RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLS-HNN 418
           +LP+L  L L+ N +K      L +L       L  HNN
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 33/201 (16%)

Query: 199 SDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF--NLTNLMRLQLDGNKFIGEI 256
           S  QL   +P+ + +      +L LS+N+L   + ++     LTNL  L L  N  +  I
Sbjct: 26  SKQQLP-NVPQSLPS---YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH-LNFI 79

Query: 257 PE-SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQLSAL 314
              +      L  L LS NHL         +L ALE + + NN++   +    F  ++ L
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQL 138

Query: 315 KILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS 374
           + L LS N              I +  +   K   +L         L+ LDLS N+L   
Sbjct: 139 QKLYLSQN-------------QISRFPVELIKDGNKLPK-------LMLLDLSSNKLKKL 178

Query: 375 IPNRIDRLPQL--NYLLLAHN 393
               + +LP    N L L +N
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 14/163 (8%)

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNK 251
              LD+S N L+    E   T   +L  L LS+N L   I S+ F  + NL  L L  N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 252 FIGEIP-ESLSKCYLLGGLYLSDNHLSGEIPR-WLGNLSALEGIRMPNNNLEGPIPIE-- 307
            +  +     S    L  L L +NH+   + R    +++ L+ + +  N +    P+E  
Sbjct: 100 -LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156

Query: 308 --FCQLSALKILDLSNNSIFGTLPSCFSPAH---IEQVHLSKN 345
               +L  L +LDLS+N +     +            ++L  N
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 18/117 (15%)

Query: 314 LKILDLSNNSIFGTLPSCFSPAHI---EQVHLSKNKIEGRLESIIHDS-----PYLVTLD 365
             +LDLS+N++   L + ++P  +     + LS N +     + I        P L  LD
Sbjct: 41  TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL-----NFISSEAFVPVPNLRYLD 94

Query: 366 LSYNRLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPV-QLCQLKEVRLIDLSHNNLS 420
           LS N LH ++   +   L  L  LLL +N+I   +       + +++ + LS N +S
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQI--GYLSGIHALNLSHNNLTGTIPT-TFSNLKQIESLD 543
           + +  + +DLS N L+  +  +     L+ +H+L LSHN+L   I +  F  +  +  LD
Sbjct: 37  LPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94

Query: 544 LSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 581
           LS N LH  +   L   L  LEV  +  N++   +   A
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNA 131

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 58/392 (14%), Positives = 117/392 (29%), Gaps = 112/392 (28%)

Query: 95  LKNADLSHLNLSGQFPNWL-----------LENNTNLVMLLLANNSL-------FGSFRM 136
           +    +   +L     + +           L  + ++  ++L+ N++             
Sbjct: 1   MARFSIEGKSLKL---DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-- 55

Query: 137 PIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 196
            I S ++L   + S+ F  G +  EI      L             +  +      L  +
Sbjct: 56  -IASKKDLEIAEFSDIFT-GRVKDEI---PEALR-----------LLLQALLKCPKLHTV 99

Query: 197 DISDNQLTGEIPERMATG---CFSLKILALSNNSL-------------QGHIFSKKFNLT 240
            +SDN       E +         L+ L L NN L             +  +  K  N  
Sbjct: 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 241 NLMRLQLDGNKFIGE-----IPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM 295
            L  +    N+ +         ++     LL  + +  N +  E     G    L     
Sbjct: 160 PLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE-----GIEHLLLEGLA 213

Query: 296 PNNNLEGPIPIEFCQLSALKILDLSNNSI--------FGTLPSCFSPAHIEQVHLSKNKI 347
                             LK+LDL +N+            L S     ++ ++ L+   +
Sbjct: 214 YCQE--------------LKVLDLQDNTFTHLGSSALAIALKSW---PNLRELGLNDCLL 256

Query: 348 EGR--------LESIIHDSPYLVTLDLSYNRLHGSIPNRI-----DRLPQLNYLLLAHNY 394
             R           + +    L TL L YN +       +     +++P L +L L  N 
Sbjct: 257 SARGAAAVVDAFSKLENIG--LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

Query: 395 I--KGEIPVQLCQLKEVR----LIDLSHNNLS 420
              + ++  ++ ++   R    L +L      
Sbjct: 315 FSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 15/134 (11%)

Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN---SL 228
           + L +N      P +F+  K L R+D+S+NQ++ E+      G  SL  L L  N    L
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 229 QGHIFSKKFNLTNLMRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGEIPRWL 284
              +F     L +L  L L+ NK I  +       L     L  L L DN L        
Sbjct: 96  PKSLFEG---LFSLQLLLLNANK-INCLRVDAFQDLHN---LNLLSLYDNKLQTIAKGTF 148

Query: 285 GNLSALEGIRMPNN 298
             L A++ + +  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 15/133 (11%)

Query: 269 LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI---- 324
           + L  N +    P        L  I + NN +    P  F  L +L  L L  N I    
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96

Query: 325 ---FGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-D 380
              F  L S      ++ + L+ NKI         D   L  L L  N+L  +I      
Sbjct: 97  KSLFEGLFS------LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFS 149

Query: 381 RLPQLNYLLLAHN 393
            L  +  + LA N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 315 KILDLSNNSIFGTLPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHG 373
             + L  N+I    P  FSP   + ++ LS N+I             L +L L  N++  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 374 SIPNRI-DRLPQLNYLLLAHNYIKGEIPVQL-CQLKEVRLIDLSHNNLS 420
            +P  + + L  L  LLL  N I   + V     L  + L+ L  N L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 137 PIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL 196
           P H  Q  A L ++NN F       I   LP L  +N S N        +F     +  +
Sbjct: 27  PEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86

Query: 197 DISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFNLTNLMRLQLDGNKFI 253
            ++ N+L   +  +M  G  SLK L L +N    +    F     L+++  L L  N+ I
Sbjct: 87  LLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQ-I 141

Query: 254 GEIPE----SLSKCYLLGGLYLSDN 274
             +      +L     L  L L  N
Sbjct: 142 TTVAPGAFDTLHS---LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 194 ERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN-LTNLMRLQLDGNKF 252
             L +++N+ T      +      L+ +  SNN +   I    F   + +  + L  N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR- 92

Query: 253 IGEIPE----SLSKCYLLGGLYLSDNHLSGEIPRWL-GNLSALEGIRMPNNNLEGPIPIE 307
           +  +       L     L  L L  N ++  +       LS++  + + +N +    P  
Sbjct: 93  LENVQHKMFKGLES---LKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148

Query: 308 FCQLSALKILDLSNN 322
           F  L +L  L+L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 4/128 (3%)

Query: 269 LYLSDNHLSGEIPR-WLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGT 327
           L L++N  +          L  L  I   NN +       F   S +  + L++N +   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 328 LPSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQL 385
               F     ++ + L  N+I             +  L L  N++  ++     D L  L
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSL 155

Query: 386 NYLLLAHN 393
           + L L  N
Sbjct: 156 STLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 308 FCQLSALKILDLSNNSIFGTLPSCFSPA-HIEQVHLSKNKIEGRLESIIHDSPYLVTLDL 366
           F +L  L+ ++ SNN I       F  A  + ++ L+ N++E     +      L TL L
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112

Query: 367 SYNRLHGSIPNRI-DRLPQLNYLLLAHNYIK 396
             NR+   + N     L  +  L L  N I 
Sbjct: 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 94  DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSL----FGSFRMPIHSHQNLATLDV 149
            L N + + L  +G F     +    L  +  +NN +     G+F         +  + +
Sbjct: 38  RLNNNEFTVLEATGIF-----KKLPQLRKINFSNNKITDIEEGAF----EGASGVNEILL 88

Query: 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPS-SFADMKMLERLDISDNQLTGEIP 208
           ++N     +  ++   L  L  L L  N     + + SF  +  +  L + DNQ+T  + 
Sbjct: 89  TSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 209 ERMATGCFSLKILALSNN 226
                   SL  L L  N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 334 PAHIEQVHLSKNKIEG-RLESIIHDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLA 391
           P +  ++ L+ N+        I    P L  ++ S N++   I     +    +N +LL 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 392 HNYIKGEIPVQLCQ-LKEVRLIDLSHNNLS 420
            N ++  +  ++ + L+ ++ + L  N ++
Sbjct: 90  SNRLE-NVQHKMFKGLESLKTLMLRSNRIT 118

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 2e-10
 Identities = 43/243 (17%), Positives = 80/243 (32%), Gaps = 13/243 (5%)

Query: 85  FPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMP--IHSHQ 142
            P+  +      +       L    P     ++     L     S+  S  +   + S +
Sbjct: 313 LPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCK 372

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ 202
            L  L+  N +      + I   +  L  L   +            D      LD   ++
Sbjct: 373 ELQELEPENKWCL----LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428

Query: 203 LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSK 262
              E           +++L L++  L   +      L  +  L L  N+ +  +P +L+ 
Sbjct: 429 FLLENSVLKME-YADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNR-LRALPPALAA 484

Query: 263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG-PIPIEFCQLSALKILDLSN 321
              L  L  SDN L   +   + NL  L+ + + NN L+             L +L+L  
Sbjct: 485 LRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

Query: 322 NSI 324
           NS+
Sbjct: 543 NSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 36/249 (14%), Positives = 72/249 (28%), Gaps = 17/249 (6%)

Query: 15  LMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSI 74
                S ++ +L  +              L + +    +           L    +L  +
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSE----LESCKELQEL 377

Query: 75  SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSF 134
                    T    +     L     +    S         +      L    +      
Sbjct: 378 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTL----KAVDPMRAAYLDDLRSKFLLEN 433

Query: 135 RMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 194
            +    + ++  L +++        +     L  +  L+LS N    ++P + A ++ LE
Sbjct: 434 SVLKMEYADVRVLHLAHK---DLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489

Query: 195 RLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF-NLTNLMRLQLDGNKFI 253
            L  SDN L   +          L+ L L NN LQ     +   +   L+ L L GN  +
Sbjct: 490 VLQASDNALE-NVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-L 545

Query: 254 GEIPESLSK 262
            +      +
Sbjct: 546 CQEEGIQER 554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 47/317 (14%), Positives = 88/317 (27%), Gaps = 21/317 (6%)

Query: 258 ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKIL 317
           +S    Y    L  ++ H            + L         +   +      +    + 
Sbjct: 226 QSAW-FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLS 284

Query: 318 DLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPN 377
                      PS      +    L+    +     I   S       L  +R      +
Sbjct: 285 VEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD 344

Query: 378 RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHH 437
                 QL    L+       +  +L   KE++ ++  +      I   +          
Sbjct: 345 -SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 402

Query: 438 EAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLS 497
           E +   S         + A  P R+A               +   Y    +     + L+
Sbjct: 403 ETLQYFST--------LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV-----LHLA 449

Query: 498 CNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL 557
              LT  +   +  L  +  L+LSHN L   +P   + L+ +E L  S N L   +   +
Sbjct: 450 HKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-ENVDG-V 504

Query: 558 IVLNTLEVFKVAYNNLS 574
             L  L+   +  N L 
Sbjct: 505 ANLPRLQELLLCNNRLQ 521

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 316 ILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI 375
           ++ L+   I        +     ++ L   KI   +E++         +D S N +   +
Sbjct: 1   MVKLTAELI-EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 376 PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
                 L +L  LL+ +N I          L ++  + L++N+L 
Sbjct: 58  DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297
           N      L L G K I  I    +       +  SDN +  ++      L  L+ + + N
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 298 NNLEGPIPIEFCQLSALKILDLSNNSI--FGTLPSCFSPAHIEQVHLSKN---KIEGRLE 352
           N +          L  L  L L+NNS+   G L    S   +  + + +N     +    
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 133

Query: 353 SIIHDSPYLVTLD 365
            +I+  P +  LD
Sbjct: 134 YVIYKVPQVRVLD 146

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 21/161 (13%)

Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ-- 229
           L+L          ++F  +  L  L++  NQL   +   +      L  L L+NN L   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASL 98

Query: 230 -GHIFSKKFNLTNLMRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGEIPRWL 284
              +F     LT L +L L GN+ +  +P      L+K   L  L L+ N L   IP   
Sbjct: 99  PLGVFDH---LTQLDKLYLGGNQ-LKSLPSGVFDRLTK---LKELRLNTNQLQ-SIPA-- 148

Query: 285 G---NLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNN 322
           G    L+ L+ + +  N L+      F +L  L+ + L  N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 39/180 (21%), Positives = 61/180 (33%), Gaps = 26/180 (14%)

Query: 240 TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNN 299
            +  +L L           +      L  L L  N L         +L+ L  + + NN 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 300 LEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSP 359
           L       F  L+ L  L L  N +  +LP                   G  + +     
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQL-KSLP------------------SGVFDRLTK--- 132

Query: 360 YLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNN 418
            L  L L+ N+L  SIP    D+L  L  L L+ N ++        +L +++ I L   N
Sbjct: 133 -LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 35/134 (26%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCF----SLKILALSNN- 226
           L L  N      P  F  +  L+ L +  NQL   +P     G F     L +L L  N 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV----GVFDSLTQLTVLDLGTNQ 99

Query: 227 --SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWL 284
              L   +F +   L +L  L +  NK   E+P  + +   L  L L  N L        
Sbjct: 100 LTVLPSAVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 285 GNLSALEGIRMPNN 298
             LS+L    +  N
Sbjct: 156 DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 18/137 (13%)

Query: 194 ERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ----GHIFSKKFNLTNLMRLQLDG 249
           + L + DNQ+T ++   +     +LK L L +N L     G +F     LT L  L L  
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVG-VFDS---LTQLTVLDLGT 97

Query: 250 NKFIGEIPE----SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP 305
           N+ +  +P      L     L  L++  N L+ E+PR +  L+ L  + +  N L+    
Sbjct: 98  NQ-LTVLPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152

Query: 306 IEFCQLSALKILDLSNN 322
             F +LS+L    L  N
Sbjct: 153 GAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPS-CF-SPAHIEQVHLSKNKIEGRLESI 354
           +N +    P  F  L  LK L L +N + G LP   F S   +  + L  N++   L S 
Sbjct: 49  DNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSA 106

Query: 355 IHDS-PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK 396
           + D   +L  L +  N+L   +P  I+RL  L +L L  N +K
Sbjct: 107 VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 32/124 (25%)

Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFS----LKILALSNN- 226
           L L  N F   +P   ++ K L  +D+S+N+++  +        FS    L  L LS N 
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSN----QSFSNMTQLLTLILSYNR 89

Query: 227 --SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE-------SLSKCYLLGG--------L 269
              +    F     L +L  L L GN  I  +PE       +LS   +            
Sbjct: 90  LRCIPPRTFDG---LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145

Query: 270 YLSD 273
           +LSD
Sbjct: 146 WLSD 149

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 27/102 (26%)

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPS-CFSPAHIEQVHLSKNKIEGRLESII 355
           + N    +P E      L ++DLSNN I  TL +  FS       ++++           
Sbjct: 39  DGNQFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFS-------NMTQ----------- 79

Query: 356 HDSPYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHNYIK 396
                L+TL LSYNRL   IP R  D L  L  L L  N I 
Sbjct: 80  -----LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 484 QGRILTSM-SGI-------DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSN 535
             + L  +  GI        L  N+ T  +P ++     +  ++LS+N ++     +FSN
Sbjct: 18  SNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76

Query: 536 LKQIESLDLSYNLL 549
           + Q+ +L LSYN L
Sbjct: 77  MTQLLTLILSYNRL 90

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 18/128 (14%)

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSI-----FGTLPSCFSPAHIEQVHLSKNKIEGRL 351
              +E  +      L A K L LS N+I        +       ++  + L +N I+ ++
Sbjct: 34  IPPIEK-MDATLSTLKACKHLALSTNNIEKISSLSGME------NLRILSLGRNLIK-KI 85

Query: 352 ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK--GEIPVQLCQLKEV 409
           E++   +  L  L +SYN++  S+   I++L  L  L +++N I   GEI  +L  L ++
Sbjct: 86  ENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKL 142

Query: 410 RLIDLSHN 417
             + L+ N
Sbjct: 143 EDLLLAGN 150

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 49/338 (14%), Positives = 100/338 (29%), Gaps = 67/338 (19%)

Query: 97  NADLSHLNLSGQFPNW------------LLENNTNLVMLLLANNSLFGS-----FRMPIH 139
              ++ L+LS    N                   ++  L L+ NSL         ++   
Sbjct: 21  PHGVTSLDLSL---NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 140 SHQNLATLDVSNNFFHGHIPVEIGTYLPG----LMDLNLSRNAFNGSIPSSFADM----- 190
              N+ +L++S NF       E+   L      +  L+L  N F+    S F        
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 191 KMLERLDISDNQLTGE----IPERMATGCFSLKILALSNNSLQ----GHIFS--KKFNLT 240
             +  L++  N L  +    + + +A    ++  L L  N+L       +          
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP-A 196

Query: 241 NLMRLQLDGNKF----IGEIPESLSKC-YLLGGLYLSDNHLSGE----IPRWLGNLSALE 291
           ++  L L  N        E+    S     +  L L  N L G     +     +L  L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 292 GIRMPNNNLEGPIPIE-------FCQLSALKILDLSNNSIFGTLPSCFSPA------HIE 338
            + +  + ++     +       F  +  + ++D +   I  +     S          +
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 339 QVHLSKNKI-----EGRLESIIHDSPYLVTLDLSYNRL 371
              L    +            ++    L     +   L
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 53/343 (15%), Positives = 107/343 (31%), Gaps = 97/343 (28%)

Query: 113 LLENNTNLVMLLLANNSLFGS-----FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYL- 166
                  +  L L+ N+L+        +   ++  ++ +L++S N     +  +    L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN----SLGFKNSDELV 72

Query: 167 PGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGE----IPERMATGCFSLKILA 222
             L  +  +                 +  L++S N L+ +    + + +A   F++ +L 
Sbjct: 73  QILAAIPAN-----------------VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115

Query: 223 LSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYL-LGGLYLSDNHLSGEIP 281
           L  N                       +K   E  ++ S     +  L L  N L  +  
Sbjct: 116 LGWNDF--------------------SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155

Query: 282 RWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSI--------FGTLPSCFS 333
             L      + +     N              +  L+L  N++           L S   
Sbjct: 156 DELI-----QILAAIPAN--------------VNSLNLRGNNLASKNCAELAKFLASI-- 194

Query: 334 PAHIEQVHLSKNKIEGR-----LESIIHDSPYLVTLDLSYNRLHGS----IPNRIDRLPQ 384
           PA +  + LS N +  +              ++V+L+L  N LHG     +    D L  
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 385 LNYLLLAHNYIKGEIPVQLCQLKEV-------RLIDLSHNNLS 420
           L  + L ++ +K     Q   L           L+D +   + 
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 333 SPAHIEQVHLSKNKI-EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLA 391
           +P+ ++++ L  ++  EG+LE +  +   L  L      L  SI N + +L +L  L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 392 HNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
            N + G + V   +   +  ++LS N + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 32/157 (20%)

Query: 238 NLTNLMRLQLDGNKF-IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMP 296
             +++  L LD ++   G++     +   L  L   +  L+  I   L  L+ L+ + + 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQV-HLSKNKIEGRLESII 355
           +N + G + +   +   L  L+LS N I            +  +  L K           
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI----------KDLSTIEPLKKL---------- 112

Query: 356 HDSPYLVTLDLSYNRLHGSIPN-R---IDRLPQLNYL 388
                L +LDL    +  ++ + R      LPQL YL
Sbjct: 113 ---ENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 26/122 (21%)

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH 356
           + + EG +     +   L+ L   N  +                      I       + 
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGL--------------------TSIAN-----LP 61

Query: 357 DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKG-EIPVQLCQLKEVRLIDLS 415
               L  L+LS NR+ G +    ++ P L +L L+ N IK       L +L+ ++ +DL 
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

Query: 416 HN 417
           + 
Sbjct: 122 NC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 171 DLNLSRNAFN-GSIPSSFADMKMLERLDISDNQLT--GEIPERMATGCFSLKILALSNNS 227
           +L L  +  N G +     + + LE L   +  LT    +P+        LK L LS+N 
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK-----LNKLKKLELSDNR 75

Query: 228 LQGHIFSKKFNLTNLMRLQLDGNKF--IGEIPESLSKCYLLGGLYLSDN 274
           + G +        NL  L L GNK   +  I E L K   L  L L + 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 27/133 (20%)

Query: 193 LERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKF 252
           ++ L + +++      E +      L+ L+  N  L                  +     
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----------------SIAN--- 59

Query: 253 IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE-FCQL 311
                  L K   L  L LSDN +SG +         L  + +  N ++    IE   +L
Sbjct: 60  -------LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112

Query: 312 SALKILDLSNNSI 324
             LK LDL N  +
Sbjct: 113 ENLKSLDLFNCEV 125

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.1 bits (121), Expect = 6e-07
 Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 19/167 (11%)

Query: 112 WLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGT-YLPGLM 170
            +L+    L  L +   +   +  +      NL +L++ +      +  +I    LP L 
Sbjct: 166 PVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 171 DLNLSRNAFNGSIPSSFAD---------MKMLERLDISDNQLTGEIPERMATGCF--SLK 219
            L L     +                     L+ L I D +    + E          L+
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 220 ILALSNNSLQG----HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSK 262
            + +S   L       +      + +L  + +  N    E+ + L K
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 17/122 (13%)

Query: 100 LSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIP 159
           L  L L     ++  + + N+   L + +              NL  L + +      + 
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP-----------NLKWLGIVDAEEQNVVV 269

Query: 160 VEIGT--YLPGLMDLNLSRNAFNGS----IPSSFADMKMLERLDISDNQLTGEIPERMAT 213
                   LP L  +++S           +      +K L+ +++  N L+ E+ + +  
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

Query: 214 GC 215
             
Sbjct: 330 SL 331

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 4e-05
 Identities = 31/184 (16%), Positives = 70/184 (38%), Gaps = 19/184 (10%)

Query: 252 FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQL 311
              ++   L    LL  L +   +      +   NL +LE I            I    L
Sbjct: 160 EQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE-IISGGLPDSVVEDILGSDL 218

Query: 312 SALKILDL---SNNSIFGTLPSCFSPA-------HIEQVHLSKNKIEGRLESIIHDSPY- 360
             L+ L L     +  F    + F P        +++ + +   + +  +  +  +S   
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 361 --LVTLDLSYNRLHGS----IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 414
             L T+D+S   L       + + +D++  L ++ + +NY+  E+  +L +   +++ D+
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKI-DV 337

Query: 415 SHNN 418
           S + 
Sbjct: 338 SDSQ 341

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 40/198 (20%)

Query: 118 TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNN------FFHGHIPVEIGTYLPGLMD 171
            ++  ++  N+ +       I    N+  L +  N                   L  L  
Sbjct: 41  NSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLHDISALKE---------LTNLTY 89

Query: 172 LNLSRNAFNGSIPSS-FADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN---S 227
           L L+ N    S+P+  F  +  L+ L + +NQL   +P+ +     +L  L L++N   S
Sbjct: 90  LILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS 147

Query: 228 LQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDNHLSGEIPRW 283
           L   +F K   LTNL  L L  N+    +PE     L++   L  L L  N L   +P  
Sbjct: 148 LPKGVFDK---LTNLTELDLSYNQL-QSLPEGVFDKLTQ---LKDLRLYQNQLKS-VPD- 198

Query: 284 LG---NLSALEGIRMPNN 298
            G    L++L+ I + +N
Sbjct: 199 -GVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 57/236 (24%), Positives = 96/236 (40%), Gaps = 61/236 (25%)

Query: 194 ERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN-LTNLMRLQLDGNKF 252
            + ++    +T  + +       S+  +  +N+ ++     +    L N+  L L GNK 
Sbjct: 22  IKANLKKKSVTDAVTQNELN---SIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNK- 74

Query: 253 IGEIP--ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ 310
           + +I   + L+    L  L L+ N L         +L    G+              F +
Sbjct: 75  LHDISALKELTN---LTYLILTGNQLQ--------SLPN--GV--------------FDK 107

Query: 311 LSALKILDLSNNSIFGTLPS-CF-SPAHIEQVHLSKNKIEGRLESIIHDS-PYLVTLDLS 367
           L+ LK L L  N +  +LP   F    ++  ++L+ N+++  L   + D    L  LDLS
Sbjct: 108 LTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLS 165

Query: 368 YNRLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEV------RLIDLSH 416
           YN+L  S+P  + D+L QL  L L  N           QLK V      RL  L +
Sbjct: 166 YNQLQ-SLPEGVFDKLTQLKDLRLYQN-----------QLKSVPDGVFDRLTSLQY 209

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 288 SALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKI 347
           S   G+ M               +  L +LD   ++            ++E + L    +
Sbjct: 3   SGSSGMDMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL 61

Query: 348 EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ-LCQL 406
              +   +   P L  L+LS NR+ G +    ++LP L +L L+ N +K    ++ L +L
Sbjct: 62  I-SVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119

Query: 407 KEVRLIDLSHN 417
           + ++ +DL + 
Sbjct: 120 ECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 333 SPAHIEQVHLSKNKI-EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLA 391
           +PA + ++ L   K  +G++E +  +   L  L L    L  S+ N + +LP+L  L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 392 HNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
            N I G + +   +L  +  ++LS N L 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 28/158 (17%)

Query: 235 KKFNLTNLMRLQLDGNKF-IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGI 293
           +      +  L LD  K   G+I    ++   L  L L +  L   +   L  L  L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 294 RMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLES 353
            +  N + G + +   +L  L  L+LS N +            I  +             
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKL----------KDISTL------------E 114

Query: 354 IIHDSPYLVTLDLSYNRLHGSIPNR---IDRLPQLNYL 388
            +     L +LDL    +      R      LPQL YL
Sbjct: 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 165 YLPGLMDLNLSRNAFN-GSIPSSFADMKMLERLDISDNQLTG-EIPERMATGCFSLKILA 222
               + +L L     N G I    A+   LE L + +  L       ++      LK L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP----KLKKLE 77

Query: 223 LSNNSLQGHIFSKKFNLTNLMRLQLDGNKF--IGEIPESLSKCYLLGGLYLSDN 274
           LS N + G +      L NL  L L GNK   I  + E L K   L  L L + 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 26/122 (21%)

Query: 172 LNLSRNAFNGSIPSS--FADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229
           L L+ N     I S   F  +  L +L++  NQLT  I      G   ++ L L  N ++
Sbjct: 34  LLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK 91

Query: 230 ---GHIFSKKFNLTNLMRLQLDGNKFIGEIPE-------SLSKCYLLGG--------LYL 271
                +F     L  L  L L  N+ I  +         SL+   L            + 
Sbjct: 92  EISNKMFLG---LHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147

Query: 272 SD 273
           ++
Sbjct: 148 AE 149

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 20/115 (17%)

Query: 194 ERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG---HIFSKKFNLTNLMRLQLDGN 250
             L ++DN+L     + +      L  L L  N L G   + F      +++  LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 251 KFIGEIPE----SLSKCYLLGGLYLSDNHLSGEIPRWLG---NLSALEGIRMPNN 298
           K I EI       L +   L  L L DN +S  +    G   +L++L  + + +N
Sbjct: 89  K-IKEISNKMFLGLHQ---LKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 7/98 (7%)

Query: 182 SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN---SLQGHIFSKKFN 238
                    + L  L I + Q    +  R   G   L+ L +  +    +    F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 239 LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 276
              L RL L  N  +  +     +   L  L LS N L
Sbjct: 79  TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 4/107 (3%)

Query: 495 DLSC-NKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGK 552
            L C      +    +     +  L + +      +       L ++ +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-F 70

Query: 553 IPPQ-LIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLC 598
           + P        L    +++N L        Q  + +E    GNP  C
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 1/92 (1%)

Query: 255 EIPESLSKCYLLGGLYLSDNHLSGEIPRW-LGNLSALEGIRMPNNNLEGPIPIEFCQLSA 313
           +    L     L  LY+ +      +    L  L  L  + +  + L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 314 LKILDLSNNSIFGTLPSCFSPAHIEQVHLSKN 345
           L  L+LS N++            ++++ LS N
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 13/87 (14%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 488 LTSMSGIDLSCNKLTGEIPTQ-IGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
             +++ + +   +    +  + +  L  +  L +  + L    P  F    ++  L+LS+
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 547 NLLHGKIPPQLIVLNTLEVFKVAYNNL 573
           N L   +  + +   +L+   ++ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 8/125 (6%)

Query: 304 IPIEFCQLSALKILDLSNNSIFGTLPS-CFSP-AHIEQVHLSKNKIEGRLESIIHDSPYL 361
                     L  L + N      L          +  + + K+ +        H +P L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG 421
             L+LS+N L  S+  +  +   L  L+L+ N +        C L+ ++  +        
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL-----HCSCALRWLQRWEEEGLGGVP 136

Query: 422 HIPSC 426
                
Sbjct: 137 EQKLQ 141

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 49/377 (12%), Positives = 111/377 (29%), Gaps = 40/377 (10%)

Query: 70  QLTSISLSG-YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNW-------LLENNTNLV 121
            L  + L    +D  +     +      +  L  LN+S             L+    NL 
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTS--LVSLNISCLASEVSFSALERLVTRCPNLK 214

Query: 122 MLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIG-----TYLPGLMDLNLSR 176
            L L            +     L  L            V  G     +    L  L+   
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 177 NAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKK 236
           +A    +P+ ++    L  L++S   +      ++   C  L+ L + +      +    
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334

Query: 237 FNLTNLMRLQLDGNKFIGEIPES----------LSKCYLLGGLYLSDNHLSGEIPRWLG- 285
               +L  L++  ++     P               C  L  +      ++      +  
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR 394

Query: 286 NLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKN 345
           N   +   R+     + P  +       L+ LD+   +I            + ++ LS  
Sbjct: 395 NRPNMTRFRLCIIEPKAPDYL------TLEPLDIGFGAIVEHCKD------LRRLSLSGL 442

Query: 346 KIEGRLESIIHDSPYLVTLDLSYNRLHG-SIPNRIDRLPQLNYLLLAH-NYIKGEIPVQL 403
             +   E I   +  +  L +++       + + +     L  L +    +    +    
Sbjct: 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA 502

Query: 404 CQLKEVRLIDLSHNNLS 420
            +L+ +R + +S  ++S
Sbjct: 503 SKLETMRSLWMSSCSVS 519

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 3e-05
 Identities = 92/684 (13%), Positives = 163/684 (23%), Gaps = 256/684 (37%)

Query: 17  HLISMEKLILSN---NHFFQIPISLEPLFNL---------SKLKTFDGEICAETESHYNS 64
            +  M K ILS    +H      ++     L           ++ F  E+      +Y  
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV---LRINYKF 93

Query: 65  LTPKFQLTSISLSG----YI--------DGGTFPKFLYH------QHDLKNADLSHLNLS 106
           L    +      S     YI        D   F K  Y+         L+ A L      
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVSRLQPYLKLRQALLE----- 146

Query: 107 GQFPNWLLENNTNLV---ML-----LLANNSL----------FGSFRMPI-HSHQNLATL 147
                  L    N++   +L      +A +            F  F + + + +     L
Sbjct: 147 -------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 148 DVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMK------MLER----- 195
           ++     +              +D N +  + +  +I      ++      +  +     
Sbjct: 200 EMLQKLLY-------------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGE 255
           L +  N    +        C   KIL  +              +T+ +      +  +  
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC---KILLTTRFK----------QVTDFLSAATTTHISLDH 293

Query: 256 IPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALK 315
              +L+   +   L L          ++L              +L    P E    +  +
Sbjct: 294 HSMTLTPDEVKS-LLL----------KYLD---------CRPQDL----PREVLTTNPRR 329

Query: 316 ILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI 375
           +      SI                              I D                  
Sbjct: 330 L------SIIAES--------------------------IRDGL---------------- 341

Query: 376 PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK--EVR--LIDLSHNNLSGHIPSCLVNTA 431
               D    +N      + +   I   L  L+  E R     LS    S HIP+ L    
Sbjct: 342 -ATWDNWKHVNC-----DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---- 391

Query: 432 LSGGHHEAVAPTSIWCGRASV---YISACLPSRSAPPMGKEETVQFTTKNMSYYYQG--- 485
           LS           IW          +   L   S         V+   K  +        
Sbjct: 392 LS----------LIWFDVIKSDVMVVVNKLHKYSL--------VEKQPKESTISIPSIYL 433

Query: 486 --------------RILTSMSGI------DLSCNKLTGEIPTQIGYLSGIHALNLSHNNL 525
                          I+   +        DL    L     + IG+    H  N+ H   
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPER 489

Query: 526 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI--VLNTLEVFKVAY--------NNLSG 575
                  F + + +E       + H          +LNTL+  K  Y             
Sbjct: 490 MTLFRMVFLDFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYER 543

Query: 576 KIPDRAQFS-TFEEDSYEGNPFLC 598
            +     F    EE+      +  
Sbjct: 544 LVNAILDFLPKIEENLICS-KYTD 566

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 15/232 (6%)

Query: 102 HLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVE 161
            L      P+      +  V+      S          S   +  +D+SN+         
Sbjct: 53  DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112

Query: 162 IGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISD-NQLTGEIPERMATGCFSLKI 220
           I +    L +L+L     +  I ++ A    L RL++S  +  +    + + + C  L  
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172

Query: 221 LALS------NNSLQGHIFSKKFNLTNLMRLQLDG-NKFIGE--IPESLSKCYLLGGLYL 271
           L LS         +Q  +         + +L L G  K + +  +   + +C  L  L L
Sbjct: 173 LNLSWCFDFTEKHVQVAV---AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229

Query: 272 SD-NHLSGEIPRWLGNLSALEGIRMPN-NNLEGPIPIEFCQLSALKILDLSN 321
           SD   L  +  +    L+ L+ + +    ++     +E  ++  LK L +  
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 291 EGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPS-CF-SPAHIEQVHLSKNKIE 348
             + +  N+L+      F +L++L  L L  N +  +LP+  F     +  ++LS N+++
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 349 GRLESIIHDS-PYLVTLDLSYNRLHGSIPNRI-DRLPQLNYLLLAHNYIK 396
             L + + D    L  L L+ N+L  S+P+ + D+L QL  L L  N +K
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK 137

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 24/179 (13%)

Query: 169 LMDLNLSRNAFNGSIPSSFADM-----KMLERLDISDNQLTGEIPERMATGCFSLKILAL 223
           L  LNL+         +  A +       L+ ++++  QL       +       + L L
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL 133

Query: 224 SNNSLQ---GHIFSK--KFNLTNLMRLQLDGNKFIGE-----IPESLSKCYLLGGLYLSD 273
             NSL              +   +  L+L  N  +       + E L+    +  L L  
Sbjct: 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLH 192

Query: 274 NHLSGE----IPRWLGNLSALEGIRMPNNNLEGPIPIEFCQL----SALKILDLSNNSI 324
             L  E    +   L     L+ + +  N       +   +      +L++L L  N +
Sbjct: 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 59/411 (14%), Positives = 122/411 (29%), Gaps = 38/411 (9%)

Query: 161 EIGTYLPGLMDLNLSRNAF--NGSIPSSFADMKMLERLDISD-NQLTGEIPERMATGCFS 217
           EI   L  L  ++  R           + A    LE L +   +  T +    + T C  
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165

Query: 218 LKILALSNNSL--QGHIFSKKF--NLTNLMRLQLDGNKFIGEIPESL----SKCYLLGGL 269
           +K L +  +S   +   +  +   + T+L  L     +F    P+ L      C  L  +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 270 YLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG--T 327
            + D  +  E+  +    + LE     + N +  +P ++  L   + L     S  G   
Sbjct: 226 KVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 328 LPSCFSPA-HIEQVHLSK-NKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQL 385
           +P  F  A  I ++ L           ++I   P L  L+         +        QL
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344

Query: 386 NYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGH--HEAVAPT 443
             L +     +  +  +   + +  LI L+           L   A+      +E++   
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGC------QELEYMAVYVSDITNESLESI 398

Query: 444 SIWCGR-ASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLS--CNK 500
             +        +           +  +  V+                 +           
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG---------CKKLRRFAFYLRQGG 449

Query: 501 LTGEIPTQIG-YLSGIHALNLSHNNLTGT-IPTTFSNLKQIESLDLSYNLL 549
           LT    + IG Y   +  + L +   +   +         ++ L++     
Sbjct: 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 25/115 (21%)

Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCF----SLKILALSNNS 227
           L L  N         F  +  L +L +S NQ+   +P+    G F     L IL L  N 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPD----GVFDKLTKLTILYLHENK 87

Query: 228 LQ----GHIFSKKFNLTNLMRLQLDGNKFIGEIPE----SLSKCYLLGGLYLSDN 274
           LQ    G +F K   LT L  L LD N+ +  +P+     L+    L  ++L  N
Sbjct: 88  LQSLPNG-VFDK---LTQLKELALDTNQ-LKSVPDGIFDRLTS---LQKIWLHTN 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	691
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.71

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.6e-69  Score=614.17  Aligned_cols=604  Identities=30%  Similarity=0.425  Sum_probs=474.0

Q ss_pred             ccccccccc-ccc--cccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCcccccc-----------------
Q 046382            2 SLTINLLKT-SLI--SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESH-----------------   61 (691)
Q Consensus         2 ~l~~n~~~~-l~~--~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----------------   61 (691)
                      +|++|.++. +|.  .++++++|++|+|++|. ..+..+...+.++++|++|+++++......                 
T Consensus       106 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~  184 (768)
T 3rgz_A          106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA  184 (768)
T ss_dssp             ECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEE
T ss_pred             ECCCCcCCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEE
Confidence            455555553 344  55666666666666655 333333222244555555555443221100                 


Q ss_pred             --------ccCCCCCccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccccc
Q 046382           62 --------YNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS  133 (691)
Q Consensus        62 --------~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  133 (691)
                              ......+.+|++|++++|.+.+..|. ++++++|++|++++|.+++.+|.. +.++++|++|++++|.+.+.
T Consensus       185 Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~  262 (768)
T 3rgz_A          185 ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGP  262 (768)
T ss_dssp             CCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEES
T ss_pred             CCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCc
Confidence                    01113445777888888877776666 788888888888888887776765 47888888888888888776


Q ss_pred             CCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhh
Q 046382          134 FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT  213 (691)
Q Consensus       134 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  213 (691)
                      .|..  .+++|++|++++|++++.+|..++..+++|++|++++|.+++..|..++++++|++|++++|.+++.+|...+.
T Consensus       263 ~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~  340 (768)
T 3rgz_A          263 IPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL  340 (768)
T ss_dssp             CCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred             cCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence            6654  78888999999998888888888776689999999999999999999999999999999999998889988778


Q ss_pred             cCCCCCEEEcccccCCccCcccccCCC-CCCEEEccCCcCcccCCccccC--CCCCCEEEccCCcCCCcchhhhhcCCCC
Q 046382          214 GCFSLKILALSNNSLQGHIFSKKFNLT-NLMRLQLDGNKFIGEIPESLSK--CYLLGGLYLSDNHLSGEIPRWLGNLSAL  290 (691)
Q Consensus       214 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L  290 (691)
                      .+++|++|++++|.+++..+..+..++ +|+.|++++|.+.+..+..+..  +++|+.|++++|.+++.+|..+..+++|
T Consensus       341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  420 (768)
T 3rgz_A          341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL  420 (768)
T ss_dssp             TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred             cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCC
Confidence            899999999999999988888888887 9999999999999888877776  7899999999999999999999999999


Q ss_pred             CEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCC
Q 046382          291 EGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN  369 (691)
Q Consensus       291 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n  369 (691)
                      ++|++++|.+++..|..+..+++|++|++++|.+.+.++..+ .+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus       421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  500 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN  500 (768)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence            999999999999999999999999999999999998887766 7899999999999999999999999999999999999


Q ss_pred             CCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCC-c------ccCC
Q 046382          370 RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHH-E------AVAP  442 (691)
Q Consensus       370 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~-~------~~~~  442 (691)
                      ++++.+|.+++.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+....-..... .      .+..
T Consensus       501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~  580 (768)
T 3rgz_A          501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN  580 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred             ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999998876532110000 0      0000


Q ss_pred             Ccc--cccCcc--cccccccCCC----CCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccC
Q 046382          443 TSI--WCGRAS--VYISACLPSR----SAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSG  514 (691)
Q Consensus       443 ~~~--~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  514 (691)
                      ...  .|....  ..+.+..+..    ............+.... ...+  ..+++|+.|||++|+++|.+|..++.+++
T Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~-~~~~--~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  657 (768)
T 3rgz_A          581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT-SPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPY  657 (768)
T ss_dssp             CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC-CCSC--SSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred             ccccccccccccccccccccchhhhccccccccccccceecccC-chhh--hccccccEEECcCCcccccCCHHHhcccc
Confidence            000  000000  0000000000    00000000000011000 0011  22688999999999999999999999999


Q ss_pred             CCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCC
Q 046382          515 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGN  594 (691)
Q Consensus       515 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~N  594 (691)
                      |+.|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|+.++|.++....+.||
T Consensus       658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN  737 (768)
T 3rgz_A          658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN  737 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSC
T ss_pred             CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCc
Q 046382          595 PFLCGKPLSKSCNHNGLTTV  614 (691)
Q Consensus       595 p~~c~~~l~~~c~~~~~~~~  614 (691)
                      |++|+.++. .|.......|
T Consensus       738 ~~Lcg~~l~-~C~~~~~~~~  756 (768)
T 3rgz_A          738 PGLCGYPLP-RCDPSNADGY  756 (768)
T ss_dssp             TEEESTTSC-CCCSCC----
T ss_pred             chhcCCCCc-CCCCCccCCC
Confidence            999999987 8877665555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.6e-63  Score=564.65  Aligned_cols=554  Identities=29%  Similarity=0.365  Sum_probs=349.6

Q ss_pred             cccccccccccccCCCCCCEEeCCCCCCccccCC-cccccCCCCCcEEeCCCCccccccccCC-CCCccccEEEecCCCC
Q 046382            4 TINLLKTSLISLMHLISMEKLILSNNHFFQIPIS-LEPLFNLSKLKTFDGEICAETESHYNSL-TPKFQLTSISLSGYID   81 (691)
Q Consensus         4 ~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~   81 (691)
                      +.+.+..+|+.++++++|++|+|++|. ..+..+ ...+.++++|++|+++++.........+ ..+.+|++|++++|.+
T Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A           85 SNSHINGSVSGFKCSASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             TTSCEEECCCCCCCCTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred             cCCCcCCCchhhccCCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence            344444455566666666666666666 333222 1246666666666666643321111111 3444666666666666


Q ss_pred             CCCcchh---hcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccC
Q 046382           82 GGTFPKF---LYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHI  158 (691)
Q Consensus        82 ~~~~~~~---l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~  158 (691)
                      ++..+..   +.++++|++|++++|.+.+..+.   ..+++|++|++++|.+.+..|. +..+++|++|++++|.+++.+
T Consensus       164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~  239 (768)
T 3rgz_A          164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF  239 (768)
T ss_dssp             EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred             CCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence            6555544   55666666666666666544442   4566666666666666555554 666666666666666666555


Q ss_pred             chhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccC
Q 046382          159 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN  238 (691)
Q Consensus       159 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  238 (691)
                      |..+.. +++|++|++++|.+++..|..  .+++|++|++++|.+++.+|..++..+++|++|++++|.+++..+..+..
T Consensus       240 ~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  316 (768)
T 3rgz_A          240 SRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS  316 (768)
T ss_dssp             HHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred             cHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence            554443 566666666666666555543  56666666666666665666655444466666666666666666666666


Q ss_pred             CCCCCEEEccCCcCcccCCcc-ccCCCCCCEEEccCCcCCCcchhhhhcCC-CCCEEecCCCccCCCcchhhcC--CCCC
Q 046382          239 LTNLMRLQLDGNKFIGEIPES-LSKCYLLGGLYLSDNHLSGEIPRWLGNLS-ALEGIRMPNNNLEGPIPIEFCQ--LSAL  314 (691)
Q Consensus       239 l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~--l~~L  314 (691)
                      +++|++|++++|.+.+.+|.. +..+++|+.|++++|.+++.+|..+..++ +|++|++++|.+.+..+..+..  +++|
T Consensus       317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L  396 (768)
T 3rgz_A          317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL  396 (768)
T ss_dssp             CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred             CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence            666666666666666555543 56666666666666666655666665555 6666666666665555554444  5556


Q ss_pred             CEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC
Q 046382          315 KILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN  393 (691)
Q Consensus       315 ~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n  393 (691)
                      ++|++++|.+.+.++..+ .+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN  476 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence            666666666655555444 4566666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEE
Q 046382          394 YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQ  473 (691)
Q Consensus       394 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (691)
                      ++++..|..+..+++|++|++++|++++.+|..+....                                    ....+.
T Consensus       477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~------------------------------------~L~~L~  520 (768)
T 3rgz_A          477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE------------------------------------NLAILK  520 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT------------------------------------TCCEEE
T ss_pred             cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC------------------------------------CCCEEE
Confidence            66666666666666666666666666666665554422                                    111111


Q ss_pred             EEecCccceec--cccccccceEEcCCCeeeeccc---------------------------------------------
Q 046382          474 FTTKNMSYYYQ--GRILTSMSGIDLSCNKLTGEIP---------------------------------------------  506 (691)
Q Consensus       474 ~~~~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~---------------------------------------------  506 (691)
                      +..+.......  ...+++|+.|++++|++++.+|                                             
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR  600 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence            11111111100  0124555556666555554444                                             


Q ss_pred             -------------------------hhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCC
Q 046382          507 -------------------------TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN  561 (691)
Q Consensus       507 -------------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  561 (691)
                                               ..+..+++|+.|||++|++++.+|..++++++|+.|+|++|++++.+|+.+..++
T Consensus       601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~  680 (768)
T 3rgz_A          601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR  680 (768)
T ss_dssp             GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence                                     4455578899999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382          562 TLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       562 ~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      +|+.|++++|+++|.+|. ...+..++.+++++|+.....|
T Consensus       681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            999999999999999998 5668889999999998765444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-59  Score=540.91  Aligned_cols=527  Identities=20%  Similarity=0.168  Sum_probs=437.8

Q ss_pred             cccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccc-cccccCCCCCccccEEEecCCC
Q 046382            2 SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAET-ESHYNSLTPKFQLTSISLSGYI   80 (691)
Q Consensus         2 ~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~~   80 (691)
                      +.+++.++.+|.   -.++|++|+|++|.+....  ...+.++++|++|+++++... ......+..+.+|++|+|++|.
T Consensus        10 dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A           10 FYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EESCCCSSCCCS---SCTTCCEEEEESCCCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             EccCCCCCCCCC---CCCCcCEEECCCCcCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            456788999996   5689999999999954332  256899999999999997432 2223345667799999999999


Q ss_pred             CCCCcchhhcCCCCCCEEEccCCCCcccCchH-HhhcCCCCCEEEccCCcccccCC-cCccCCCccCEEEccCCcCcccC
Q 046382           81 DGGTFPKFLYHQHDLKNADLSHLNLSGQFPNW-LLENNTNLVMLLLANNSLFGSFR-MPIHSHQNLATLDVSNNFFHGHI  158 (691)
Q Consensus        81 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~  158 (691)
                      +.+..|..+.++++|++|+|++|.+++.+|.. .++++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence            99888999999999999999999998766543 35899999999999999987755 56899999999999999998766


Q ss_pred             chhhhhCC--CCCcEEEccCCcccccCchhhhCCCC------CCEEeccccccccccchhHhhcC--CCCCEEEcccc--
Q 046382          159 PVEIGTYL--PGLMDLNLSRNAFNGSIPSSFADMKM------LERLDISDNQLTGEIPERMATGC--FSLKILALSNN--  226 (691)
Q Consensus       159 ~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n--  226 (691)
                      +..+.. +  ++|+.|++++|.+.+..|..+..+++      |++|++++|.+++.++..+...+  .+++.+.++.+  
T Consensus       165 ~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          165 EHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             SGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             HHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence            766654 4  79999999999999888877776665      99999999998877777665433  56888887743  


Q ss_pred             -------cCCccCcccccCC--CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCC
Q 046382          227 -------SLQGHIFSKKFNL--TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN  297 (691)
Q Consensus       227 -------~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  297 (691)
                             .+.......+.++  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus       244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~  323 (844)
T 3j0a_A          244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY  323 (844)
T ss_dssp             BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred             cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence                   3333333444443  7899999999999988889999999999999999999988888999999999999999


Q ss_pred             CccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcc
Q 046382          298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIP  376 (691)
Q Consensus       298 n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  376 (691)
                      |.+.+..+..+..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+++.     ..+++|+.|++++|+++ .+|
T Consensus       324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~  397 (844)
T 3j0a_A          324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLP  397 (844)
T ss_dssp             CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCC
T ss_pred             CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccc
Confidence            99998888899999999999999999987777666 689999999999999854     33889999999999998 445


Q ss_pred             hhhcCCCCccEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccc
Q 046382          377 NRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYIS  455 (691)
Q Consensus       377 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  455 (691)
                      ..   ..+++.|++++|++++... ..+..+++|+.|++++|++++..+....                           
T Consensus       398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------------------  447 (844)
T 3j0a_A          398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP---------------------------  447 (844)
T ss_dssp             CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS---------------------------
T ss_pred             cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc---------------------------
Confidence            43   5689999999999985432 2356889999999999999743322100                           


Q ss_pred             cccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeee-----eccchhhhcccCCCeEeCCCCcCCcccc
Q 046382          456 ACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT-----GEIPTQIGYLSGIHALNLSHNNLTGTIP  530 (691)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  530 (691)
                                                    ..+++|+.|+|++|.++     +..+..|..+++|++|+|++|++++..|
T Consensus       448 ------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  497 (844)
T 3j0a_A          448 ------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP  497 (844)
T ss_dssp             ------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred             ------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence                                          01578999999999997     4455678899999999999999999999


Q ss_pred             hhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCCCCC
Q 046382          531 TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK  604 (691)
Q Consensus       531 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~~  604 (691)
                      ..|.++++|+.|+|++|++++..|..+.  ++|+.|++++|++++.+|..  +..+..++++||||.|+|++.+
T Consensus       498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~~  567 (844)
T 3j0a_A          498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELST  567 (844)
T ss_dssp             TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCCS
T ss_pred             hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccHH
Confidence            9999999999999999999987777766  89999999999999998864  5688889999999999998753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.6e-57  Score=512.55  Aligned_cols=561  Identities=20%  Similarity=0.161  Sum_probs=437.1

Q ss_pred             cccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCC
Q 046382            2 SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYID   81 (691)
Q Consensus         2 ~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~   81 (691)
                      +.+++.++.+|..+.  +++++|+|++|.+...  +...+.++++|++|+++++.........+..+.+|++|++++|.+
T Consensus        10 ~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A           10 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRL--PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             ECCSSCCSSCCSCSC--TTCSEEECCSSCCCCC--CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred             ECCCCCccccccccC--CCCcEEECCCCCCCCc--CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence            567788889987765  7899999999984332  335688899999999988554332222233455899999999988


Q ss_pred             CCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchh
Q 046382           82 GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVE  161 (691)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~  161 (691)
                      ++..+..++++++|++|++++|.+.+ ++...|+++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..
T Consensus        86 ~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           86 SQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             CccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence            87666678899999999999998874 44333588999999999999988888888888999999999999988444443


Q ss_pred             hh-hCCCCCcEEEccCCcccccCchhhhCC---------------------------CCCCEEeccccccccccchhHhh
Q 046382          162 IG-TYLPGLMDLNLSRNAFNGSIPSSFADM---------------------------KMLERLDISDNQLTGEIPERMAT  213 (691)
Q Consensus       162 ~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~~  213 (691)
                      +. ..+++|++|++++|.+++..|..+..+                           ++|++|++++|.+++..|.. +.
T Consensus       165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~-~~  243 (680)
T 1ziw_A          165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT-FL  243 (680)
T ss_dssp             HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT-TG
T ss_pred             hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH-hh
Confidence            32 125789999999998887777766544                           56778888888888544443 35


Q ss_pred             cCC--CCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCC-----cch----h
Q 046382          214 GCF--SLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG-----EIP----R  282 (691)
Q Consensus       214 ~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-----~~~----~  282 (691)
                      +++  +|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+     .+|    .
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~  323 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF  323 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred             ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence            554  49999999999998888888899999999999999998888889999999999998875543     122    2


Q ss_pred             hhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcc--cCCCCC---CCCcccEEEccCCccccccccccCC
Q 046382          283 WLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG--TLPSCF---SPAHIEQVHLSKNKIEGRLESIIHD  357 (691)
Q Consensus       283 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~---~~~~L~~L~l~~n~i~~~~~~~~~~  357 (691)
                      .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+..  .....+   ..++|+.|++++|++++..+..+..
T Consensus       324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            67788999999999999998888889999999999999987532  222222   2368999999999999888888999


Q ss_pred             CCCccEEeccCCCCCCCcc-hhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC--CCCChhhhhccccC
Q 046382          358 SPYLVTLDLSYNRLHGSIP-NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS--GHIPSCLVNTALSG  434 (691)
Q Consensus       358 ~~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~~~l~~  434 (691)
                      +++|+.|++++|.+++.++ ..+..+++|++|++++|++.+..+..|..+++|+.|++++|.+.  +.+|..+....   
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~---  480 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR---  480 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT---
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC---
Confidence            9999999999999876554 67888999999999999998888888888999999999998876  34555444322   


Q ss_pred             CCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceec--cccccccceEEcCCCeeeeccc------
Q 046382          435 GHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQ--GRILTSMSGIDLSCNKLTGEIP------  506 (691)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~------  506 (691)
                                                       ....+.+..+.......  ...+++|++|++++|++++..+      
T Consensus       481 ---------------------------------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  527 (680)
T 1ziw_A          481 ---------------------------------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG  527 (680)
T ss_dssp             ---------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred             ---------------------------------CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence                                             11111111111111111  0227899999999999986422      


Q ss_pred             --hhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCC-C-C
Q 046382          507 --TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR-A-Q  582 (691)
Q Consensus       507 --~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~-~  582 (691)
                        ..+..+++|++|+|++|+++...+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|.. . .
T Consensus       528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  607 (680)
T 1ziw_A          528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA  607 (680)
T ss_dssp             CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH
T ss_pred             cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc
Confidence              23788999999999999999666678999999999999999999888888899999999999999999887763 2 5


Q ss_pred             CCCcCcCcccCCCCCCCCCC-CC
Q 046382          583 FSTFEEDSYEGNPFLCGKPL-SK  604 (691)
Q Consensus       583 ~~~~~~~~~~~Np~~c~~~l-~~  604 (691)
                      +..++.++++||||.|+|+. .+
T Consensus       608 ~~~L~~l~l~~N~~~c~c~~~~~  630 (680)
T 1ziw_A          608 FRNLTELDMRFNPFDCTCESIAW  630 (680)
T ss_dssp             HTTCSEEECTTCCCCBCCCCCSS
T ss_pred             ccccCEEEccCCCcccCCccHHH
Confidence            77899999999999999985 44

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.3e-55  Score=487.59  Aligned_cols=531  Identities=21%  Similarity=0.196  Sum_probs=430.9

Q ss_pred             cccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCC
Q 046382            2 SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYID   81 (691)
Q Consensus         2 ~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~   81 (691)
                      +.++..++++|..+..  ++++|+|++|.+...+  ...+.++++|++|+++++.........+..+.+|++|++++|.+
T Consensus        18 ~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           18 NCENLGLNEIPGTLPN--STECLEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             ECTTSCCSSCCTTSCT--TCCEEECTTCCCSEEC--TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             ECCCCCcccCcCCCCC--cCcEEEccCCccCcCC--hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            4567788999987765  8999999999954432  35689999999999999766544444566777999999999999


Q ss_pred             CCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchh
Q 046382           82 GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVE  161 (691)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~  161 (691)
                      .+..|..++++++|++|++++|.+++..+.. ++++++|++|++++|++.+.....+..+++|++|++++|.+++..+..
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  172 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED  172 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred             cccChhhhcccccccEeeccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence            8888888999999999999999998433333 588999999999999998765455666999999999999998444444


Q ss_pred             hhhCCCCCc--EEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCc-----cCcc
Q 046382          162 IGTYLPGLM--DLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG-----HIFS  234 (691)
Q Consensus       162 ~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~  234 (691)
                      + ..+++|+  +|++++|.+++..|..+.. .+|++|++++|..   ++.. +.++.+++...+....+..     ....
T Consensus       173 ~-~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~-~~~l~~~~l~~l~~~~~~~~~~~~i~~~  246 (606)
T 3t6q_A          173 M-SSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVI-FKGLKNSTIQSLWLGTFEDMDDEDISPA  246 (606)
T ss_dssp             H-HTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHH-HHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred             h-hhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHH-hhhccccchhheechhhccccccccChh
Confidence            4 4588898  8999999999777776654 6899999998862   3332 3445555544443332221     1222


Q ss_pred             cccCCC--CCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCC
Q 046382          235 KKFNLT--NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLS  312 (691)
Q Consensus       235 ~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~  312 (691)
                      .+..+.  +|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..++
T Consensus       247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC
Confidence            233332  7899999999998887888999999999999999998 6777888899999999999999877788899999


Q ss_pred             CCCEEEccCCcCcccCCCC-C-CCCcccEEEccCCcccccc--ccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEE
Q 046382          313 ALKILDLSNNSIFGTLPSC-F-SPAHIEQVHLSKNKIEGRL--ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYL  388 (691)
Q Consensus       313 ~L~~L~L~~n~i~~~~~~~-~-~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  388 (691)
                      +|++|++++|.+.+..+.. + .+++|++|++++|.+++..  +..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL  405 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence            9999999999887555443 3 7899999999999998776  6778899999999999999988888889999999999


Q ss_pred             ecccCcCcccCCc-CCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCC
Q 046382          389 LLAHNYIKGEIPV-QLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG  467 (691)
Q Consensus       389 ~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (691)
                      ++++|++++..+. .+..+++|++|++++|.+.+..|..+..                                      
T Consensus       406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------  447 (606)
T 3t6q_A          406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------------------------------------  447 (606)
T ss_dssp             ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT--------------------------------------
T ss_pred             ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC--------------------------------------
Confidence            9999999876554 4889999999999999998766655433                                      


Q ss_pred             CcccEEEEecCccceeccccccccceEEcCCCeeeec---cchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeC
Q 046382          468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE---IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDL  544 (691)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  544 (691)
                                          +++|++|++++|++++.   .+..+..+++|++|++++|++++..|..|.++++|++|+|
T Consensus       448 --------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          448 --------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL  507 (606)
T ss_dssp             --------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             --------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence                                67899999999999863   3367899999999999999999888999999999999999


Q ss_pred             CCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCC
Q 046382          545 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLS  603 (691)
Q Consensus       545 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~  603 (691)
                      ++|++++..|+.+..+++| .|++++|++++.+|. ...++.++.++++||||.|+|+..
T Consensus       508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  566 (606)
T 3t6q_A          508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI  566 (606)
T ss_dssp             CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred             CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence            9999999999999999999 999999999988776 355678899999999999999754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-53  Score=482.61  Aligned_cols=531  Identities=21%  Similarity=0.171  Sum_probs=428.9

Q ss_pred             CEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCCCCCcchhhcCCCCCCEEEcc
Q 046382           22 EKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLS  101 (691)
Q Consensus        22 ~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~  101 (691)
                      +.++.+++.+...+..   +.  +++++|+++++.........+..+.+|++|++++|.+++..|..++++++|++|+++
T Consensus         7 ~~~~cs~~~L~~ip~~---~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDD---LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             SEEECCSSCCSSCCSC---SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred             CeeECCCCCccccccc---cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence            6788998886555432   22  789999999965443333334556699999999999999989999999999999999


Q ss_pred             CCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccc
Q 046382          102 HLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG  181 (691)
Q Consensus       102 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~  181 (691)
                      +|.++ .+|...|+++++|++|++++|++.+..+..+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++
T Consensus        82 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           82 HNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             SSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCC
T ss_pred             CCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-cccccCCEEEccCCcccc
Confidence            99998 6776557999999999999999988888889999999999999999995555544 458999999999999998


Q ss_pred             cCchhhh--CCCCCCEEeccccccccccchhHhhc---------------------------CCCCCEEEcccccCCccC
Q 046382          182 SIPSSFA--DMKMLERLDISDNQLTGEIPERMATG---------------------------CFSLKILALSNNSLQGHI  232 (691)
Q Consensus       182 ~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~---------------------------l~~L~~L~l~~n~l~~~~  232 (691)
                      ..+..+.  .+++|++|++++|.+++..|. .+..                           .++|+.|++++|.+.+..
T Consensus       160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~  238 (680)
T 1ziw_A          160 LKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS  238 (680)
T ss_dssp             BCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred             cCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence            7777665  568999999999999844443 2232                           267888999999999888


Q ss_pred             cccccCCCC--CCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC-----Ccc
Q 046382          233 FSKKFNLTN--LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG-----PIP  305 (691)
Q Consensus       233 ~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-----~~~  305 (691)
                      +..+..++.  |++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+     .+|
T Consensus       239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp  318 (680)
T 1ziw_A          239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP  318 (680)
T ss_dssp             TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred             hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccc
Confidence            888877754  9999999999998888899999999999999999998889999999999999999876542     122


Q ss_pred             ----hhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCcccc--ccccccCC--CCCccEEeccCCCCCCCcc
Q 046382          306 ----IEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEG--RLESIIHD--SPYLVTLDLSYNRLHGSIP  376 (691)
Q Consensus       306 ----~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~--~~~~~~~~--~~~L~~L~ls~n~i~~~~~  376 (691)
                          ..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+..  .....+..  .++|+.|++++|++++..|
T Consensus       319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~  398 (680)
T 1ziw_A          319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES  398 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred             ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence                267889999999999999998777766 78999999999997542  23333333  3689999999999998888


Q ss_pred             hhhcCCCCccEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccc
Q 046382          377 NRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYIS  455 (691)
Q Consensus       377 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  455 (691)
                      ..+..+++|++|++++|++++.++ ..+..+++|++|++++|++.+..+..+....                        
T Consensus       399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~------------------------  454 (680)
T 1ziw_A          399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP------------------------  454 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT------------------------
T ss_pred             hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc------------------------
Confidence            899999999999999999987665 6899999999999999998866655544322                        


Q ss_pred             cccCCCCCCCCCCcccEEEEecCccc----eeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccc-
Q 046382          456 ACLPSRSAPPMGKEETVQFTTKNMSY----YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIP-  530 (691)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-  530 (691)
                                  ....+.+.......    ...-..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+ 
T Consensus       455 ------------~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~  522 (680)
T 1ziw_A          455 ------------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH  522 (680)
T ss_dssp             ------------TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGST
T ss_pred             ------------ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchh
Confidence                        00111111100000    0001237899999999999998888889999999999999999986532 


Q ss_pred             -------hhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCC-CCCCCcCcCcccCCCC
Q 046382          531 -------TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR-AQFSTFEEDSYEGNPF  596 (691)
Q Consensus       531 -------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~Np~  596 (691)
                             ..|.++++|+.|+|++|+++...+..|..+++|+.|++++|++++..+.. ..+..++.+++++|..
T Consensus       523 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             TSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             hccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence                   23789999999999999999666667999999999999999999776653 5678889999998864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-54  Score=484.02  Aligned_cols=530  Identities=17%  Similarity=0.147  Sum_probs=440.0

Q ss_pred             cccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCC
Q 046382            2 SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYID   81 (691)
Q Consensus         2 ~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~   81 (691)
                      +.+++.++.+|..+.  ++|++|+|++|.+...+  ...+.++++|++|+++++.........+..+.+|++|++++|.+
T Consensus        17 ~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           17 QCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILK--SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             ECTTSCCSSCCTTSC--TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EccCCCcccCCCCCC--CCcCEEECCCCCcCEeC--hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence            567888999998776  89999999999954433  24689999999999999765443334456777999999999999


Q ss_pred             CCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccc-cCCcCccCCCccCEEEccCCcCcccCch
Q 046382           82 GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFG-SFRMPIHSHQNLATLDVSNNFFHGHIPV  160 (691)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  160 (691)
                      ++..|..++++++|++|++++|.+.+..+.. ++++++|++|++++|.+.+ ..|..+.++++|++|++++|++++..+.
T Consensus        93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A           93 QSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred             cccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence            9888999999999999999999998444344 6899999999999999976 4588899999999999999999955554


Q ss_pred             hhhhCCCC----CcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCcc-----
Q 046382          161 EIGTYLPG----LMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH-----  231 (691)
Q Consensus       161 ~~~~~l~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----  231 (691)
                      .+.. +++    +++|++++|.+++..+..+... +|++|++++|.+++......+..++.|+.+++..+.+...     
T Consensus       172 ~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~  249 (606)
T 3vq2_A          172 DLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI  249 (606)
T ss_dssp             TTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             hhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence            4433 344    4589999999997666666555 8999999999987555555668899999998876554321     


Q ss_pred             -CcccccCCC--CCCEEEc-cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchh
Q 046382          232 -IFSKKFNLT--NLMRLQL-DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE  307 (691)
Q Consensus       232 -~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  307 (691)
                       ....+..+.  .++.+++ ..+.+.+..+. +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+. .+| .
T Consensus       250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~  324 (606)
T 3vq2_A          250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-T  324 (606)
T ss_dssp             CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-C
T ss_pred             cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccc-c
Confidence             112222222  4566677 66777777776 8899999999999999974 45 7888999999999999994 666 4


Q ss_pred             hcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCcccccc--ccccCCCCCccEEeccCCCCCCCcchhhcCCCCc
Q 046382          308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL--ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQL  385 (691)
Q Consensus       308 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L  385 (691)
                      + .+++|++|++++|...+.. ....+++|++|++++|.+++..  +..+..+++|+.|++++|.++ ..|..+..+++|
T Consensus       325 ~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L  401 (606)
T 3vq2_A          325 L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL  401 (606)
T ss_dssp             C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTC
T ss_pred             C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCC
Confidence            5 8999999999999665544 4447899999999999998763  677889999999999999988 466788999999


Q ss_pred             cEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCC
Q 046382          386 NYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAP  464 (691)
Q Consensus       386 ~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (691)
                      ++|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..                                   
T Consensus       402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------------  446 (606)
T 3vq2_A          402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-----------------------------------  446 (606)
T ss_dssp             CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-----------------------------------
T ss_pred             CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-----------------------------------
Confidence            999999999998777 68899999999999999998777765543                                   


Q ss_pred             CCCCcccEEEEecCccceeccccccccceEEcCCCeeee-ccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEe
Q 046382          465 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLD  543 (691)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  543 (691)
                                             +++|++|++++|.+++ ..|..++.+++|++|+|++|++++..|..|.++++|++|+
T Consensus       447 -----------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          447 -----------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             -----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             -----------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence                                   6789999999999997 4788999999999999999999999999999999999999


Q ss_pred             CCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCC-CcCcCcccCCCCCCCCCCCC
Q 046382          544 LSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS-TFEEDSYEGNPFLCGKPLSK  604 (691)
Q Consensus       544 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~~~~~~Np~~c~~~l~~  604 (691)
                      |++|++++..|..+..+++|+.|++++|+++...+....++ +++.+++++|||.|+|++.+
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~  565 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK  565 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence            99999999999999999999999999999996554455554 58999999999999998754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6e-53  Score=471.57  Aligned_cols=509  Identities=20%  Similarity=0.180  Sum_probs=432.0

Q ss_pred             Ccccccccccc-cccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382            1 MSLTINLLKTS-LISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY   79 (691)
Q Consensus         1 l~l~~n~~~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~   79 (691)
                      |+|++|.++.+ |.+|+++++|++|+|++|.+... . ...+.++++|++|+++++.........+..+.+|++|++++|
T Consensus        38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  115 (606)
T 3t6q_A           38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-H-EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT  115 (606)
T ss_dssp             EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-C-TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred             EEccCCccCcCChhHhccCccceEEECCCCcccee-C-hhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence            57999999999 67999999999999999984433 2 356899999999999997654443345667779999999999


Q ss_pred             CCCCCcchhhcCCCCCCEEEccCCCCccc-CchHHhhcCCCCCEEEccCCcccccCCcCccCCCccC--EEEccCCcCcc
Q 046382           80 IDGGTFPKFLYHQHDLKNADLSHLNLSGQ-FPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLA--TLDVSNNFFHG  156 (691)
Q Consensus        80 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~--~L~Ls~n~i~~  156 (691)
                      .+++..+..++++++|++|++++|.+.+. .|.  +..+++|++|++++|.+.+..+..+..+++|+  +|++++|.+++
T Consensus       116 ~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             CcccCCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            99987778899999999999999999853 344  34699999999999999988888899999999  99999999995


Q ss_pred             cCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccc----cccchhHhhcCC--CCCEEEcccccCCc
Q 046382          157 HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLT----GEIPERMATGCF--SLKILALSNNSLQG  230 (691)
Q Consensus       157 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~--~L~~L~l~~n~l~~  230 (691)
                      ..| ..+. ..+|++|++++|.   ..+..+..+.+++...+....+.    ..++...+.++.  +|+.|++++|.+++
T Consensus       194 ~~~-~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          194 IEP-GAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             ECT-TTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             cCh-hHhh-hccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            444 4444 4689999999987   34555666665544443322211    134444444444  79999999999999


Q ss_pred             cCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcch-hhc
Q 046382          231 HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPI-EFC  309 (691)
Q Consensus       231 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~  309 (691)
                      ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+.
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence            88888999999999999999998 6788899999999999999999988888999999999999999998855544 588


Q ss_pred             CCCCCCEEEccCCcCcccC--CCC-CCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcch-hhcCCCCc
Q 046382          310 QLSALKILDLSNNSIFGTL--PSC-FSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPN-RIDRLPQL  385 (691)
Q Consensus       310 ~l~~L~~L~L~~n~i~~~~--~~~-~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~-~~~~l~~L  385 (691)
                      .+++|++|++++|.+.+..  +.. ..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+. .+..+++|
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence            9999999999999998764  433 3789999999999999999899999999999999999999876554 48899999


Q ss_pred             cEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCC-C--hhhhhccccCCCCcccCCCcccccCcccccccccCCCC
Q 046382          386 NYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI-P--SCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRS  462 (691)
Q Consensus       386 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (691)
                      ++|++++|.+.+..+..+..+++|++|++++|++.+.. |  ..+.                                  
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~----------------------------------  473 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ----------------------------------  473 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG----------------------------------
T ss_pred             CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc----------------------------------
Confidence            99999999999888999999999999999999997521 1  1111                                  


Q ss_pred             CCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEE
Q 046382          463 APPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESL  542 (691)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  542 (691)
                                              .+++|++|++++|.+++..|..|..+++|++|+|++|++++..|..+.++++| .|
T Consensus       474 ------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L  528 (606)
T 3t6q_A          474 ------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL  528 (606)
T ss_dssp             ------------------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred             ------------------------cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence                                    16899999999999999889999999999999999999999999999999999 99


Q ss_pred             eCCCccccccCCcccccCCCCCeEEccCCcccccCC
Q 046382          543 DLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP  578 (691)
Q Consensus       543 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  578 (691)
                      ++++|++++..|..+..+++|+.+++++|++.+..+
T Consensus       529 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             ECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999989999999999999999999987544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-52  Score=482.29  Aligned_cols=537  Identities=21%  Similarity=0.172  Sum_probs=436.8

Q ss_pred             Ccccccccccc-cccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382            1 MSLTINLLKTS-LISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY   79 (691)
Q Consensus         1 l~l~~n~~~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~   79 (691)
                      |+|++|.|+.+ +..|+++++|++|+|++|. ..+.++...+.++++|++|+++++.........+..+.+|++|++++|
T Consensus        29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC  107 (844)
T ss_dssp             EEEESCCCCEECSSSCSSCCSCSEEEECTTC-CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred             EECCCCcCCccChhHCcccccCeEEeCCCCC-CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence            58999999998 6899999999999999997 444444467999999999999997765544455667789999999999


Q ss_pred             CCCCCcchh--hcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCC--CccCEEEccCCcCc
Q 046382           80 IDGGTFPKF--LYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSH--QNLATLDVSNNFFH  155 (691)
Q Consensus        80 ~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~Ls~n~i~  155 (691)
                      .+.+..+..  +.++++|++|++++|.+++..+...|+++++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence            999866655  89999999999999999866554457999999999999999988888888877  89999999999998


Q ss_pred             ccCchhhhhCCC------CCcEEEccCCcccccCchhhhCC---CCCCEEecccc---------ccccccchhHhhcC--
Q 046382          156 GHIPVEIGTYLP------GLMDLNLSRNAFNGSIPSSFADM---KMLERLDISDN---------QLTGEIPERMATGC--  215 (691)
Q Consensus       156 ~~~~~~~~~~l~------~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~L~~n---------~l~~~~~~~~~~~l--  215 (691)
                      +..|..+.. ++      .|++|++++|.+.+..+..+...   .+++.|.++.+         .+. ......+.++  
T Consensus       188 ~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~f~~l~~  265 (844)
T 3j0a_A          188 SRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLAR  265 (844)
T ss_dssp             CCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST-TGGGTTTTTTTT
T ss_pred             cccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC-CCChhhhhcccc
Confidence            777765443 23      49999999999887777766543   67888888743         232 2223333443  


Q ss_pred             CCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEec
Q 046382          216 FSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM  295 (691)
Q Consensus       216 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  295 (691)
                      ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            68999999999999888889999999999999999999888999999999999999999999888899999999999999


Q ss_pred             CCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCc
Q 046382          296 PNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI  375 (691)
Q Consensus       296 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~  375 (691)
                      ++|.+.+..+..|..+++|++|++++|.+.+..    .+++|+.|++++|+++....    ...+++.|++++|++++..
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~L~l~~N~l~~l~~----~~~~l~~L~ls~N~l~~l~  417 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPK----INLTANLIHLSENRLENLD  417 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSEEEEESCCCCCCCC----CCTTCCEEECCSCCCCSST
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcchhccCCCCcccccc----cccccceeecccCccccCc
Confidence            999999888888999999999999999987433    27899999999999985532    2568999999999998642


Q ss_pred             -chhhcCCCCccEEecccCcCcccCCc-CCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccc
Q 046382          376 -PNRIDRLPQLNYLLLAHNYIKGEIPV-QLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVY  453 (691)
Q Consensus       376 -~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  453 (691)
                       +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....                        
T Consensus       418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~------------------------  473 (844)
T 3j0a_A          418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW------------------------  473 (844)
T ss_dssp             THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS------------------------
T ss_pred             hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch------------------------
Confidence             33466899999999999999865443 4667899999999999997432211100                        


Q ss_pred             cccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhh
Q 046382          454 ISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTF  533 (691)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  533 (691)
                                                 ..+  ..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+
T Consensus       474 ---------------------------~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  524 (844)
T 3j0a_A          474 ---------------------------DVF--EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL  524 (844)
T ss_dssp             ---------------------------SCS--SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred             ---------------------------hhh--cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence                                       001  116899999999999998888999999999999999999998777776


Q ss_pred             cCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCCCCCCCCCCC
Q 046382          534 SNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNHNG  610 (691)
Q Consensus       534 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~~~c~~~~  610 (691)
                      .  ++|+.|||++|++++..|+.+   ++|+.+++++|++.+..+    +..+.......|...|+.+....|..+.
T Consensus       525 ~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~----~~~f~~~~~~~~~~~~~~~~~~~C~~p~  592 (844)
T 3j0a_A          525 P--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE----LSTFINWLNHTNVTIAGPPADIYCVYPD  592 (844)
T ss_dssp             C--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS----CCSHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred             h--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc----cHHHHHHHHhcCcccccccccCccCCch
Confidence            5  899999999999999988765   479999999999987543    2233222233455566655555675443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.4e-50  Score=449.32  Aligned_cols=506  Identities=19%  Similarity=0.162  Sum_probs=424.4

Q ss_pred             Ccccccccccccc-cccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382            1 MSLTINLLKTSLI-SLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY   79 (691)
Q Consensus         1 l~l~~n~~~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~   79 (691)
                      |+|++|.++.++. .|+++++|++|+|++|.+...+  ...+.++++|++|+++++.........+..+.+|++|++++|
T Consensus        37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE--DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET  114 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred             EECCCCCcCEeChhhccCCccCcEEeCCCCcccccC--HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence            5789999999975 8999999999999999854432  256899999999999997654433345667779999999999


Q ss_pred             CCCCCcchhhcCCCCCCEEEccCCCCcc-cCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccC----EEEccCCcC
Q 046382           80 IDGGTFPKFLYHQHDLKNADLSHLNLSG-QFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLA----TLDVSNNFF  154 (691)
Q Consensus        80 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~----~L~Ls~n~i  154 (691)
                      .+.+..+..++++++|++|++++|.+.+ .+|.. ++++++|++|++++|++.+..+..++.+++|+    +|++++|.+
T Consensus       115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l  193 (606)
T 3vq2_A          115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI  193 (606)
T ss_dssp             CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC
T ss_pred             ccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc
Confidence            9998877889999999999999999975 56776 58999999999999999988888787776665    899999999


Q ss_pred             cccCchhhhhCCCCCcEEEccCCccc-ccCchhhhCCCCCCEEecccccccc-----ccchhHhhcCC--CCCEEEc-cc
Q 046382          155 HGHIPVEIGTYLPGLMDLNLSRNAFN-GSIPSSFADMKMLERLDISDNQLTG-----EIPERMATGCF--SLKILAL-SN  225 (691)
Q Consensus       155 ~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~--~L~~L~l-~~  225 (691)
                      + .++...+.. .+|++|++++|.+. +..|..+++++.|+.+++..+.+.+     .++...+.++.  .++.+++ ..
T Consensus       194 ~-~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  271 (606)
T 3vq2_A          194 D-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT  271 (606)
T ss_dssp             C-EECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred             c-eeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence            9 677777764 49999999999986 4677889999999999886654431     12333333333  4566677 66


Q ss_pred             ccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcc
Q 046382          226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP  305 (691)
Q Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  305 (691)
                      +.+.+..+. +..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+ +.+|. + .+++|++|++++|...+.  
T Consensus       272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~--  343 (606)
T 3vq2_A          272 NDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSIS--  343 (606)
T ss_dssp             TTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEE--
T ss_pred             ccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccc--
Confidence            777776666 888999999999999986 455 788999999999999999 46774 4 899999999999965433  


Q ss_pred             hhhcCCCCCCEEEccCCcCcccC--CCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcc-hhhcC
Q 046382          306 IEFCQLSALKILDLSNNSIFGTL--PSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIP-NRIDR  381 (691)
Q Consensus       306 ~~~~~l~~L~~L~L~~n~i~~~~--~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~-~~~~~  381 (691)
                      ..+..+++|++|++++|.+.+..  +..+ .+++|++|++++|.+++.. ..+..+++|+.|++++|.+.+..+ ..+..
T Consensus       344 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  422 (606)
T 3vq2_A          344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLS  422 (606)
T ss_dssp             CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred             hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhc
Confidence            36778999999999999988663  3333 7899999999999998754 788899999999999999997776 67899


Q ss_pred             CCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCC-CChhhhhccccCCCCcccCCCcccccCcccccccccCC
Q 046382          382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGH-IPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS  460 (691)
Q Consensus       382 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (691)
                      +++|++|++++|++++..|..+..+++|++|++++|++++. +|..+..                               
T Consensus       423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------------------------  471 (606)
T 3vq2_A          423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-------------------------------  471 (606)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------------------------
T ss_pred             cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-------------------------------
Confidence            99999999999999998999999999999999999999763 4443332                               


Q ss_pred             CCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCC
Q 046382          461 RSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE  540 (691)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  540 (691)
                                                 +++|++|++++|++++..|..+..+++|++|+|++|++++..|..|.++++|+
T Consensus       472 ---------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          472 ---------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS  524 (606)
T ss_dssp             ---------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred             ---------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence                                       68999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCccccccCCcccccCC-CCCeEEccCCcccccCCC
Q 046382          541 SLDLSYNLLHGKIPPQLIVLN-TLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       541 ~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p~  579 (691)
                      +|+|++|+++ .+|..+..++ +|+.|++++|++.+..+.
T Consensus       525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999 5666688887 599999999999876553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-48  Score=433.61  Aligned_cols=489  Identities=19%  Similarity=0.178  Sum_probs=327.4

Q ss_pred             CCcEEeCCCCccccccccCCCCCccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEc
Q 046382           46 KLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLL  125 (691)
Q Consensus        46 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L  125 (691)
                      ++++|+++++.........+..+.+|++|++++|.+++..+..+.++++|++|++++|.+++..|. .|+++++|++|++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L  107 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVA  107 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEEC
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-hhcCccccccccc
Confidence            455555555433222222233344555555555555444444455555555555555555422222 2345555555555


Q ss_pred             cCCcccccCCcCccCCCccCEEEccCCcCcc-cCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCC----CEEeccc
Q 046382          126 ANNSLFGSFRMPIHSHQNLATLDVSNNFFHG-HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML----ERLDISD  200 (691)
Q Consensus       126 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~L~~  200 (691)
                      ++|++.+..+..++.+++|++|++++|.+++ .+|..+.. +++|++|++++|.+++..+..++.+++|    ++|++++
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            5555544444345555555555555555542 23444333 4555555555555554444444444444    4555555


Q ss_pred             cccccccchhHhhcCCCCCEEEcccccCCc-cCcccccCCCCCCEEEccCCcC------cccCCccccCCC--CCCEEEc
Q 046382          201 NQLTGEIPERMATGCFSLKILALSNNSLQG-HIFSKKFNLTNLMRLQLDGNKF------IGEIPESLSKCY--LLGGLYL  271 (691)
Q Consensus       201 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~--~L~~L~l  271 (691)
                      |.++ .++...+... +|+.|++++|.... ..+..+..+++++...+....+      .......+..++  .++.+++
T Consensus       187 n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          187 NPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             CCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence            5554 2333332222 45555555443221 1122233344443333322111      111112222222  2456677


Q ss_pred             cCC-cCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccc
Q 046382          272 SDN-HLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGR  350 (691)
Q Consensus       272 ~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~  350 (691)
                      +++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+.. ++. ..+++|++|++++|.+.+.
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~-~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT-LKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB-CBCSSCCEEEEESCBSCCB
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCc-ccccccCEEeCcCCccccc
Confidence            766 666777888999999999999999998 567777778 99999999999883 333 4678999999999998776


Q ss_pred             cccccCCCCCccEEeccCCCCCCCc--chhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCCh-hh
Q 046382          351 LESIIHDSPYLVTLDLSYNRLHGSI--PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS-CL  427 (691)
Q Consensus       351 ~~~~~~~~~~L~~L~ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~  427 (691)
                      .+.  ..+++|+.|++++|.+++..  +..+..+++|++|++++|++.+..+. +..+++|++|++++|.+.+..|. .+
T Consensus       341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~  417 (570)
T 2z63_A          341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF  417 (570)
T ss_dssp             CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred             ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh
Confidence            554  68899999999999998654  67889999999999999999866554 88999999999999998755442 11


Q ss_pred             hhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccch
Q 046382          428 VNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT  507 (691)
Q Consensus       428 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  507 (691)
                      .                                                          .+++|++|++++|.+++..|.
T Consensus       418 ~----------------------------------------------------------~l~~L~~L~l~~n~l~~~~~~  439 (570)
T 2z63_A          418 L----------------------------------------------------------SLRNLIYLDISHTHTRVAFNG  439 (570)
T ss_dssp             T----------------------------------------------------------TCTTCCEEECTTSCCEECCTT
T ss_pred             h----------------------------------------------------------cCCCCCEEeCcCCcccccchh
Confidence            1                                                          168899999999999988999


Q ss_pred             hhhcccCCCeEeCCCCcCC-cccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCC
Q 046382          508 QIGYLSGIHALNLSHNNLT-GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFST  585 (691)
Q Consensus       508 ~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~  585 (691)
                      .+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|. ...++.
T Consensus       440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  519 (570)
T 2z63_A          440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS  519 (570)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence            9999999999999999997 57899999999999999999999999899999999999999999999998776 467788


Q ss_pred             cCcCcccCCCCCCCCCCC
Q 046382          586 FEEDSYEGNPFLCGKPLS  603 (691)
Q Consensus       586 ~~~~~~~~Np~~c~~~l~  603 (691)
                      ++.+++++||+.|+|+..
T Consensus       520 L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          520 LQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CCEEECCSSCBCCCTTTT
T ss_pred             CcEEEecCCcccCCCcch
Confidence            999999999999999853

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-48  Score=430.52  Aligned_cols=507  Identities=19%  Similarity=0.197  Sum_probs=418.8

Q ss_pred             ccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCCC
Q 046382            3 LTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDG   82 (691)
Q Consensus         3 l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~   82 (691)
                      -++..++++|..+.  +++++|+|++|.+...+  ...+.++++|++|+++++.........+..+.+|++|++++|.++
T Consensus        14 c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~   89 (570)
T 2z63_A           14 CMELNFYKIPDNLP--FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (570)
T ss_dssp             CCSSCCSSCCSSSC--SSCCEEECCSCCCCEEC--TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             eCCCCccccCCCcc--ccccEEEccCCccCccC--hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence            35567889997664  68999999999954433  246899999999999997654433344667779999999999998


Q ss_pred             CCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccc-cCCcCccCCCccCEEEccCCcCcccCchh
Q 046382           83 GTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFG-SFRMPIHSHQNLATLDVSNNFFHGHIPVE  161 (691)
Q Consensus        83 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~  161 (691)
                      +..+..+.++++|++|++++|.++ .++...++++++|++|++++|.+.+ ..|..+.++++|++|++++|++++..+..
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~  168 (570)
T 2z63_A           90 SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (570)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred             ccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence            888889999999999999999998 4554336899999999999999977 36888999999999999999999544444


Q ss_pred             hhhCCCCC----cEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC------cc
Q 046382          162 IGTYLPGL----MDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ------GH  231 (691)
Q Consensus       162 ~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------~~  231 (691)
                      +.. +++|    ++|++++|.+++..+..+... +|++|++++|..........+.+++.++.+.+....+.      ..
T Consensus       169 ~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  246 (570)
T 2z63_A          169 LRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  246 (570)
T ss_dssp             GHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred             ccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence            443 6677    899999999998888888766 89999999986543333344567888887776543322      11


Q ss_pred             CcccccCCC--CCCEEEccCC-cCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhh
Q 046382          232 IFSKKFNLT--NLMRLQLDGN-KFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF  308 (691)
Q Consensus       232 ~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  308 (691)
                      ....+..++  .++.+++.++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  
T Consensus       247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--  321 (570)
T 2z63_A          247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--  321 (570)
T ss_dssp             CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--
T ss_pred             chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--
Confidence            222223333  3567777777 667778888999999999999999998 577778888 9999999999998 4443  


Q ss_pred             cCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCcccccc--ccccCCCCCccEEeccCCCCCCCcchhhcCCCCcc
Q 046382          309 CQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL--ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLN  386 (691)
Q Consensus       309 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~  386 (691)
                      ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++..  +..+..+++|+.|++++|.+.+..+ .+..+++|+
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~  399 (570)
T 2z63_A          322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLE  399 (570)
T ss_dssp             CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCC
T ss_pred             ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCC
Confidence            4788999999999998766554 67899999999999998764  5678899999999999999985544 489999999


Q ss_pred             EEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCC
Q 046382          387 YLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPP  465 (691)
Q Consensus       387 ~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (691)
                      +|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..                                    
T Consensus       400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------  443 (570)
T 2z63_A          400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------------------  443 (570)
T ss_dssp             EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------------------
T ss_pred             EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc------------------------------------
Confidence            99999999987665 57889999999999999998766654433                                    


Q ss_pred             CCCcccEEEEecCccceeccccccccceEEcCCCeee-eccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeC
Q 046382          466 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT-GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDL  544 (691)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  544 (691)
                                            +++|++|++++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|++|++
T Consensus       444 ----------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          444 ----------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             ----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ----------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence                                  679999999999998 578999999999999999999999888999999999999999


Q ss_pred             CCccccccCCcccccCCCCCeEEccCCcccccCCCCC
Q 046382          545 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA  581 (691)
Q Consensus       545 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~  581 (691)
                      ++|++++..|..+..+++|+.|++++|++++..|...
T Consensus       502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            9999999888889999999999999999999887643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-46  Score=415.86  Aligned_cols=476  Identities=20%  Similarity=0.169  Sum_probs=295.4

Q ss_pred             cccccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCC
Q 046382            2 SLTINLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYID   81 (691)
Q Consensus         2 ~l~~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~   81 (691)
                      +.+++.++++|..+.  ++|++|+|++|.+...+  ...+.+++                        +|++|++++|.+
T Consensus        11 ~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~--~~~~~~l~------------------------~L~~L~Ls~n~i   62 (549)
T 2z81_A           11 DGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIG--HGDLRACA------------------------NLQVLILKSSRI   62 (549)
T ss_dssp             ECTTSCCSSCCSCCC--TTCCEEECCSSCCCEEC--SSTTSSCT------------------------TCCEEECTTSCC
T ss_pred             ECCCCccccccccCC--CCccEEECcCCccCccC--hhhhhcCC------------------------cccEEECCCCCc
Confidence            345677777776554  67888888877733221  12344444                        555555555666


Q ss_pred             CCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccccc-CCcCccCCCccCEEEccCCcCcccCch
Q 046382           82 GGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS-FRMPIHSHQNLATLDVSNNFFHGHIPV  160 (691)
Q Consensus        82 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~  160 (691)
                      ++..+..+.++++|++|++++|.+++ ++...++++++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.+|.
T Consensus        63 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  141 (549)
T 2z81_A           63 NTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR  141 (549)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             CccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence            65566677888888888888888874 4444458888888888888888653 456788888888888888885446765


Q ss_pred             hhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccC---ccccc
Q 046382          161 EIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHI---FSKKF  237 (691)
Q Consensus       161 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~  237 (691)
                      ..+..+++|++|++++|.+++..|..++.+++|++|++++|.+. .+|..++..+++|++|++++|.+++..   .....
T Consensus       142 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  220 (549)
T 2z81_A          142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE  220 (549)
T ss_dssp             TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred             hhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhh
Confidence            55555888888888888888888888888888999999888887 777777777888888888888887642   12223


Q ss_pred             CCCCCCEEEccCCcCcccCC----ccccCCCCCCEEEccCCcCCCcc------hhhhhcCCCCCEEecCCCccCCC----
Q 046382          238 NLTNLMRLQLDGNKFIGEIP----ESLSKCYLLGGLYLSDNHLSGEI------PRWLGNLSALEGIRMPNNNLEGP----  303 (691)
Q Consensus       238 ~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~------~~~l~~l~~L~~L~l~~n~~~~~----  303 (691)
                      .+++|+.|++++|.+.+..+    ..+..++.|+.+++++|.+.+..      ...+..+++++.|.+.++.+...    
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~  300 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY  300 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC
T ss_pred             hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcc
Confidence            46778888888887665332    23355667777777777665321      11234455666666666554321    


Q ss_pred             -cchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccc---cccCCCCCccEEeccCCCCCCCcc--
Q 046382          304 -IPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLE---SIIHDSPYLVTLDLSYNRLHGSIP--  376 (691)
Q Consensus       304 -~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~ls~n~i~~~~~--  376 (691)
                       .+..+...++|+.|++++|.+.......+ .+++|++|++++|.+++..+   ..+..+++|+.|++++|++++..+  
T Consensus       301 ~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  380 (549)
T 2z81_A          301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG  380 (549)
T ss_dssp             CCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred             cchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch
Confidence             11112234456666666666553222222 35666666666666655432   224556666666666666654321  


Q ss_pred             hhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCccccccc
Q 046382          377 NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISA  456 (691)
Q Consensus       377 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  456 (691)
                      ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..                              
T Consensus       381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~------------------------------  428 (549)
T 2z81_A          381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC------------------------------  428 (549)
T ss_dssp             HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTT------------------------------
T ss_pred             hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccch------------------------------
Confidence            34556666666666666666 45555566666666666666654 11110                              


Q ss_pred             ccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCC
Q 046382          457 CLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNL  536 (691)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  536 (691)
                                                    .+++|++|++++|++++..    ..+++|++|+|++|+++ .+|. ...+
T Consensus       429 ------------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l  472 (549)
T 2z81_A          429 ------------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLF  472 (549)
T ss_dssp             ------------------------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred             ------------------------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccC
Confidence                                          0234556666666655422    34555666666666655 3333 2445


Q ss_pred             CcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccc
Q 046382          537 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG  575 (691)
Q Consensus       537 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  575 (691)
                      ++|+.|+|++|++++..|+.+..+++|+.|++++|++++
T Consensus       473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred             ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence            556666666666555555555555555555555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.4e-46  Score=410.33  Aligned_cols=464  Identities=17%  Similarity=0.193  Sum_probs=324.9

Q ss_pred             Ccccccccccc-cccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382            1 MSLTINLLKTS-LISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY   79 (691)
Q Consensus         1 l~l~~n~~~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~   79 (691)
                      |+|++|.++.+ |..|+++++|++|+|++|++...+  ...+.++++|++|+++++.........+..+.+|++|++++|
T Consensus        31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE--GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN  108 (549)
T ss_dssp             EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred             EECcCCccCccChhhhhcCCcccEEECCCCCcCccC--hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence            57899999998 578999999999999999944332  245788888888888875443222222344557777777777


Q ss_pred             CCCC-CcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccC
Q 046382           80 IDGG-TFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHI  158 (691)
Q Consensus        80 ~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~  158 (691)
                      .+++ ..+..++++++|++|++++|.+.+.+|...++++++|++|++++|++.+..+..+..+++|++|++++|.+. .+
T Consensus       109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~  187 (549)
T 2z81_A          109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FL  187 (549)
T ss_dssp             CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-TH
T ss_pred             cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-cc
Confidence            7765 345567777777777777777444555444577777777777777777777777777777777777777766 56


Q ss_pred             chhhhhCCCCCcEEEccCCcccccC---chhhhCCCCCCEEeccccccccccchhHh---hcCCCCCEEEcccccCCccC
Q 046382          159 PVEIGTYLPGLMDLNLSRNAFNGSI---PSSFADMKMLERLDISDNQLTGEIPERMA---TGCFSLKILALSNNSLQGHI  232 (691)
Q Consensus       159 ~~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~  232 (691)
                      |..+...+++|++|++++|.+++..   ......+++|++|++++|.+++..+..+.   ..+++|+.+++++|.+.+..
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~  267 (549)
T 2z81_A          188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG  267 (549)
T ss_dssp             HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred             chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence            6666555677777777777776431   11233456777777777776654443332   33556666666666554321


Q ss_pred             cccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCc-----chhhhhcCCCCCEEecCCCccCCCcchh
Q 046382          233 FSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE-----IPRWLGNLSALEGIRMPNNNLEGPIPIE  307 (691)
Q Consensus       233 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~  307 (691)
                      ...                  ......+..+++++.|++.++.+...     .+..+...++|+.|++++|.+. .+|..
T Consensus       268 ~~~------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~  328 (549)
T 2z81_A          268 DFN------------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCS  328 (549)
T ss_dssp             CCC------------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHH
T ss_pred             ccc------------------ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHH
Confidence            000                  00011233444555555555544321     1223344567777888877776 34444


Q ss_pred             h-cCCCCCCEEEccCCcCcccCC---C-CCCCCcccEEEccCCccccccc--cccCCCCCccEEeccCCCCCCCcchhhc
Q 046382          308 F-CQLSALKILDLSNNSIFGTLP---S-CFSPAHIEQVHLSKNKIEGRLE--SIIHDSPYLVTLDLSYNRLHGSIPNRID  380 (691)
Q Consensus       308 ~-~~l~~L~~L~L~~n~i~~~~~---~-~~~~~~L~~L~l~~n~i~~~~~--~~~~~~~~L~~L~ls~n~i~~~~~~~~~  380 (691)
                      + ..+++|++|++++|.+.+..+   . ...+++|++|++++|++++..+  ..+..+++|+.|++++|+++ .+|..+.
T Consensus       329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  407 (549)
T 2z81_A          329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ  407 (549)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC
T ss_pred             HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc
Confidence            3 567788888888887776432   1 2356788888888888876543  45788999999999999998 6788888


Q ss_pred             CCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCC
Q 046382          381 RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS  460 (691)
Q Consensus       381 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (691)
                      .+++|++|++++|++++ ++..+  .++|++|++++|++++..+                                    
T Consensus       408 ~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~------------------------------------  448 (549)
T 2z81_A          408 WPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL------------------------------------  448 (549)
T ss_dssp             CCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC------------------------------------
T ss_pred             ccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc------------------------------------
Confidence            89999999999999984 34333  3689999999999974221                                    


Q ss_pred             CCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCC
Q 046382          461 RSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE  540 (691)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  540 (691)
                                                .+++|++|+|++|+++ .+|. ...+++|++|+|++|++++.+|..|..+++|+
T Consensus       449 --------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  500 (549)
T 2z81_A          449 --------------------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ  500 (549)
T ss_dssp             --------------------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred             --------------------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence                                      1678999999999998 6665 56799999999999999998888999999999


Q ss_pred             EEeCCCccccccCC
Q 046382          541 SLDLSYNLLHGKIP  554 (691)
Q Consensus       541 ~L~Ls~N~l~~~~p  554 (691)
                      .|++++|++++..|
T Consensus       501 ~L~l~~N~~~~~~~  514 (549)
T 2z81_A          501 KIWLHTNPWDCSCP  514 (549)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEEecCCCccCCCc
Confidence            99999999987665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.2e-48  Score=430.29  Aligned_cols=435  Identities=18%  Similarity=0.249  Sum_probs=241.8

Q ss_pred             cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCC------cc------cCchHHhhcCCCCCEEEccCCcccccCCcC
Q 046382           70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNL------SG------QFPNWLLENNTNLVMLLLANNSLFGSFRMP  137 (691)
Q Consensus        70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~------~~------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~  137 (691)
                      +++.|+|+++.+.|.+|..++++++|++|+|++|.+      .+      .+|...   +..|+ ++++++.+.+..+..
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence            788888888888888888888888888888888754      12      233322   23333 444444443333322


Q ss_pred             ccC-------------------CCccCEEEcc--CCcCcccCchhhhhCCCCCcEEEccCCccccc--------------
Q 046382          138 IHS-------------------HQNLATLDVS--NNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS--------------  182 (691)
Q Consensus       138 l~~-------------------l~~L~~L~Ls--~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------------  182 (691)
                      +..                   ...++.+.+.  +|++++ +|..+.. +++|++|++++|.+++.              
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchh
Confidence            220                   0111111111  344443 4544443 45555555555555543              


Q ss_pred             ---Cchhhh--CCCCCCEEeccccccccccchhHhhcCCCCCEEEccccc-CCc-cCcccccCC------CCCCEEEccC
Q 046382          183 ---IPSSFA--DMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNS-LQG-HIFSKKFNL------TNLMRLQLDG  249 (691)
Q Consensus       183 ---~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~L~~  249 (691)
                         +|..++  ++++|++|++++|.+.+.+|..+ ..+++|++|++++|+ +++ ..|..++.+      ++|++|++++
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence               455544  55555555555555554555433 345555555555554 444 344444333      5555555555


Q ss_pred             CcCcccCCc--cccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCC-CCEEEccCCcCcc
Q 046382          250 NKFIGEIPE--SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA-LKILDLSNNSIFG  326 (691)
Q Consensus       250 n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~i~~  326 (691)
                      |+++ .+|.  .+..+++|+.|++++|.+++.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. 
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            5555 4444  55555555555555555554455 5555555555666655555 44555555555 666666666655 


Q ss_pred             cCCCCC-C--CCcccEEEccCCccccccccccC-------CCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCc
Q 046382          327 TLPSCF-S--PAHIEQVHLSKNKIEGRLESIIH-------DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK  396 (691)
Q Consensus       327 ~~~~~~-~--~~~L~~L~l~~n~i~~~~~~~~~-------~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~  396 (691)
                      .+|..+ .  +++|++|++++|.+++..|..+.       .+++|+.|++++|.++...+..+..+++|++|++++|+++
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            333332 1  23566666666666655555555       5556667777777666433334455666777777777666


Q ss_pred             ccCCcCCCCC-------CCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCc
Q 046382          397 GEIPVQLCQL-------KEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKE  469 (691)
Q Consensus       397 ~~~~~~~~~l-------~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (691)
                      ...+..+...       ++|+.|++++|+++ .+|..+...                                       
T Consensus       471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~---------------------------------------  510 (636)
T 4eco_A          471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRAT---------------------------------------  510 (636)
T ss_dssp             BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTT---------------------------------------
T ss_pred             CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhc---------------------------------------
Confidence            3222222222       26667777777665 455433200                                       


Q ss_pred             ccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC------CCCcCCcccchhhcCCCcCCEEe
Q 046382          470 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL------SHNNLTGTIPTTFSNLKQIESLD  543 (691)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~  543 (691)
                                       .+++|++|+|++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|+
T Consensus       511 -----------------~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~  572 (636)
T 4eco_A          511 -----------------TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ  572 (636)
T ss_dssp             -----------------TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             -----------------cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence                             14566667777777664 6666666777777766      44566666676777777777777


Q ss_pred             CCCccccccCCcccccCCCCCeEEccCCccccc
Q 046382          544 LSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGK  576 (691)
Q Consensus       544 Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  576 (691)
                      |++|++ +.+|..+.  ++|+.|++++|++...
T Consensus       573 Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          573 IGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            777777 35555544  5677777777766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.3e-46  Score=410.12  Aligned_cols=456  Identities=20%  Similarity=0.176  Sum_probs=360.8

Q ss_pred             cEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccC
Q 046382           72 TSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSN  151 (691)
Q Consensus        72 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~  151 (691)
                      ++|+++++.++ .+|..+.  ++|++|++++|.+++..|. .|.++++|++|++++|++.+..|..+..+++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            46888888887 4565554  7899999999998844444 468899999999999999888888899999999999999


Q ss_pred             CcCcccCchhhhhCCCCCcEEEccCCcccc-cCchhhhCCCCCCEEeccccccccccchhHhhcCCCC--CEEEcccccC
Q 046382          152 NFFHGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSL--KILALSNNSL  228 (691)
Q Consensus       152 n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~l  228 (691)
                      |+++ .+|..   .+++|++|++++|.+++ ..|..++++++|++|++++|.+++    ..+..+++|  +.|++++|.+
T Consensus        79 N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           79 NKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred             Ccee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence            9998 77776   47899999999999986 467889999999999999998874    224567788  9999999998


Q ss_pred             --CccCcccccCCC-CCCEEEccCCcCcccCC-ccccCCCCCCEEEccCCc-------CCCcchhhhhcCCCCCEEecCC
Q 046382          229 --QGHIFSKKFNLT-NLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNH-------LSGEIPRWLGNLSALEGIRMPN  297 (691)
Q Consensus       229 --~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~~L~~L~l~~  297 (691)
                        .+..+..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence              666666665554 23457788888766544 456788899999999987       554444 678899999999999


Q ss_pred             CccCCCcchhhc---CCCCCCEEEccCCcCcccCCCC------CCCCcccEEEccCCccccccccccCCC---CCccEEe
Q 046382          298 NNLEGPIPIEFC---QLSALKILDLSNNSIFGTLPSC------FSPAHIEQVHLSKNKIEGRLESIIHDS---PYLVTLD  365 (691)
Q Consensus       298 n~~~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~------~~~~~L~~L~l~~n~i~~~~~~~~~~~---~~L~~L~  365 (691)
                      |.+.+..+..+.   ..++|++|++++|.+.+.++..      ..+++|+.+++++|.+ ......+..+   .+|+.|+
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence            887643322221   2468999999999988666654      3578899999999988 3332333333   6799999


Q ss_pred             ccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCC--CCChhhhhccccCCCCcccCCC
Q 046382          366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG--HIPSCLVNTALSGGHHEAVAPT  443 (691)
Q Consensus       366 ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~l~~~~~~~~~~~  443 (691)
                      +++|.+....  ....+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..+..              
T Consensus       309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~--------------  372 (520)
T 2z7x_B          309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ--------------  372 (520)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--------------
T ss_pred             cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--------------
Confidence            9999987432  12678999999999999998888899999999999999999974  33333332              


Q ss_pred             cccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccch-hhhcccCCCeEeCCC
Q 046382          444 SIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT-QIGYLSGIHALNLSH  522 (691)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~  522 (691)
                                                                  +++|++|++++|.+++.+|. .+..+++|++|++++
T Consensus       373 --------------------------------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~  408 (520)
T 2z7x_B          373 --------------------------------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS  408 (520)
T ss_dssp             --------------------------------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred             --------------------------------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence                                                        67899999999999975665 488899999999999


Q ss_pred             CcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382          523 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       523 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      |++++..|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+. ...+..++.+++++||+.|+|+
T Consensus       409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            999887777664  79999999999999 7788888999999999999999965444 5667788999999999999997


Q ss_pred             CCC
Q 046382          602 LSK  604 (691)
Q Consensus       602 l~~  604 (691)
                      +.+
T Consensus       486 ~~~  488 (520)
T 2z7x_B          486 RID  488 (520)
T ss_dssp             HHH
T ss_pred             chH
Confidence            543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.7e-46  Score=421.78  Aligned_cols=446  Identities=21%  Similarity=0.245  Sum_probs=266.5

Q ss_pred             cccEEEecCCCCCCCcchhhcCCCCCCEEEc-cCCCCcccCchHHh----------------------------------
Q 046382           70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADL-SHLNLSGQFPNWLL----------------------------------  114 (691)
Q Consensus        70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~~~----------------------------------  114 (691)
                      +++.|+|+++.+.|.+|..++++++|++|+| ++|.+.|..|....                                  
T Consensus       324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l  403 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL  403 (876)
T ss_dssp             CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence            7888999999888888888899999999999 77766544221100                                  


Q ss_pred             ----------------hcCCCCCEEEcc--CCcccccCCcCccCCCccCEEEccCCcCcc-----------------cCc
Q 046382          115 ----------------ENNTNLVMLLLA--NNSLFGSFRMPIHSHQNLATLDVSNNFFHG-----------------HIP  159 (691)
Q Consensus       115 ----------------~~l~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~-----------------~~~  159 (691)
                                      .....++.+.+.  .|++++ +|..+.++++|++|+|++|++++                 .+|
T Consensus       404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                            000111222222  144444 44455555555555555555554                 144


Q ss_pred             hhhh-hCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccc-ccc-ccchhHhhcCCCCCEEEcccccCCccCcccc
Q 046382          160 VEIG-TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ-LTG-EIPERMATGCFSLKILALSNNSLQGHIFSKK  236 (691)
Q Consensus       160 ~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  236 (691)
                      ..+. ..+++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..+. .++                 ..+
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~-----------------~~~  544 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLA-----------------DDE  544 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHH-----------------HCT
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhh-----------------hcc
Confidence            4442 124555555555555555555555555555555555554 443 3444332 111                 011


Q ss_pred             cCCCCCCEEEccCCcCcccCCc--cccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCC-
Q 046382          237 FNLTNLMRLQLDGNKFIGEIPE--SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA-  313 (691)
Q Consensus       237 ~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-  313 (691)
                      ..+++|+.|++++|.+. .+|.  .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ 
T Consensus       545 ~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~  620 (876)
T 4ecn_A          545 DTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQ  620 (876)
T ss_dssp             TTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTT
T ss_pred             cccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhcccc
Confidence            22335555555555555 4444  4555555555555555555 444 4555555555555555555 44545555555 


Q ss_pred             CCEEEccCCcCcccCCCCC-CC--CcccEEEccCCcccccccccc---C--CCCCccEEeccCCCCCCCcchhhcCCCCc
Q 046382          314 LKILDLSNNSIFGTLPSCF-SP--AHIEQVHLSKNKIEGRLESII---H--DSPYLVTLDLSYNRLHGSIPNRIDRLPQL  385 (691)
Q Consensus       314 L~~L~L~~n~i~~~~~~~~-~~--~~L~~L~l~~n~i~~~~~~~~---~--~~~~L~~L~ls~n~i~~~~~~~~~~l~~L  385 (691)
                      |+.|++++|.+. .+|..+ ..  ++|+.|++++|.+.+..+...   .  .+++|+.|++++|.++...+..+..+++|
T Consensus       621 L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L  699 (876)
T 4ecn_A          621 VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI  699 (876)
T ss_dssp             CCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCC
T ss_pred             CCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCC
Confidence            666666666555 333333 11  236666666666655433221   1  23477788888887774333334577788


Q ss_pred             cEEecccCcCcccCCcC-CCC-------CCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccc
Q 046382          386 NYLLLAHNYIKGEIPVQ-LCQ-------LKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAC  457 (691)
Q Consensus       386 ~~L~L~~n~i~~~~~~~-~~~-------l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  457 (691)
                      +.|++++|+++ .+|.. +..       +++|+.|++++|+++ .+|..+..                            
T Consensus       700 ~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~----------------------------  749 (876)
T 4ecn_A          700 STIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA----------------------------  749 (876)
T ss_dssp             SEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST----------------------------
T ss_pred             CEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh----------------------------
Confidence            88888888877 34433 322       237888888888887 56654430                            


Q ss_pred             cCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCC------CcCCcccch
Q 046382          458 LPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSH------NNLTGTIPT  531 (691)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~p~  531 (691)
                                                  ..+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|.
T Consensus       750 ----------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~  800 (876)
T 4ecn_A          750 ----------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT  800 (876)
T ss_dssp             ----------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred             ----------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChH
Confidence                                        015778888888888885 677788888888888866      788888999


Q ss_pred             hhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCC-CCCCcCcCcccCCCCCC--CCC
Q 046382          532 TFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSYEGNPFLC--GKP  601 (691)
Q Consensus       532 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~-~~~~~~~~~~~~Np~~c--~~~  601 (691)
                      .|.++++|+.|+|++|++ +.+|..+.  ++|+.|++++|++....+... .........+.+|++.+  +|+
T Consensus       801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence            999999999999999999 57787765  699999999999876544311 11123345566777665  665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-44  Score=407.63  Aligned_cols=528  Identities=19%  Similarity=0.169  Sum_probs=396.0

Q ss_pred             ccccccccccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCCCCCCC
Q 046382            5 INLLKTSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGT   84 (691)
Q Consensus         5 ~n~~~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   84 (691)
                      +..++++|..+.  +++++|||++|+|...+  ...|.++++|++|+++++.........+..+.+|++|+|++|++++.
T Consensus        40 ~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           40 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TSCCSSCCSSSC--TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCcCccCCCCC--cCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence            346788886654  48999999999955443  24688999999999998765433333456677899999999888876


Q ss_pred             cchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccccc-CCcCccCCCccCEEEccCCcCcccCchhhh
Q 046382           85 FPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS-FRMPIHSHQNLATLDVSNNFFHGHIPVEIG  163 (691)
Q Consensus        85 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~  163 (691)
                      .+..+.++++|++|++++|+++ .++...|+++++|++|++++|.+.+. .+..+..+++|++|++++|++++..+..+.
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence            6677888889999999999887 55555568888999999999888653 466778888899999999988854444433


Q ss_pred             hCCC----CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC------ccCc
Q 046382          164 TYLP----GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ------GHIF  233 (691)
Q Consensus       164 ~~l~----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~  233 (691)
                      . +.    ....++++.|.+....+..+ ....++.+++.+|.....++...+.++..++...+..+...      ....
T Consensus       195 ~-L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~  272 (635)
T 4g8a_A          195 V-LHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK  272 (635)
T ss_dssp             H-HHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred             c-hhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence            2 22    34578888888885555444 44557788888887665566666677888877766543322      2222


Q ss_pred             ccccCCCCCCEEEccCCcCc---ccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcC
Q 046382          234 SKKFNLTNLMRLQLDGNKFI---GEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ  310 (691)
Q Consensus       234 ~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  310 (691)
                      ..+.....+....+..+...   ......+.....++.+.+.++.+...  ..+.....++.|++.+|.+....+   ..
T Consensus       273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~  347 (635)
T 4g8a_A          273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LK  347 (635)
T ss_dssp             TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CB
T ss_pred             cccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---cc
Confidence            33334445555554443322   12334456677888888888877533  335667889999999998875433   34


Q ss_pred             CCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccc--cccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEE
Q 046382          311 LSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGR--LESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYL  388 (691)
Q Consensus       311 l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  388 (691)
                      +..|+.+++..|.+.. ......+++|+.+++++|.+...  .+..+..+.+|+.++++.+.+. ..+..+..+++|+.+
T Consensus       348 l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l  425 (635)
T 4g8a_A          348 LKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHL  425 (635)
T ss_dssp             CTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEE
T ss_pred             chhhhhcccccccCCC-Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccch
Confidence            6778899999888764 33344678999999999987543  3445567788999999999877 445567788999999


Q ss_pred             ecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCC
Q 046382          389 LLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG  467 (691)
Q Consensus       389 ~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (691)
                      ++++++.....+ ..+..+++++.+++++|.+.+..|..+..                                      
T Consensus       426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~--------------------------------------  467 (635)
T 4g8a_A          426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------------------  467 (635)
T ss_dssp             ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------------------
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccc--------------------------------------
Confidence            999888765443 46788899999999999987655543322                                      


Q ss_pred             CcccEEEEecCccceeccccccccceEEcCCCeee-eccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCC
Q 046382          468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT-GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY  546 (691)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  546 (691)
                                          +++++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus       468 --------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          468 --------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             --------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             --------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence                                678999999999854 45788899999999999999999999999999999999999999


Q ss_pred             ccccccCCcccccCCCCCeEEccCCcccccCCCC-CCC-CCcCcCcccCCCCCCCCCCCC
Q 046382          547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR-AQF-STFEEDSYEGNPFLCGKPLSK  604 (691)
Q Consensus       547 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~-~~~~~~~~~~Np~~c~~~l~~  604 (691)
                      |+|++..|..|..+++|++|++++|++++..|.. ..+ .+++.++++||||.|+|++.+
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~  587 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS  587 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHH
Confidence            9999999999999999999999999999998874 334 678999999999999998654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.4e-47  Score=424.28  Aligned_cols=443  Identities=18%  Similarity=0.241  Sum_probs=356.0

Q ss_pred             CCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccc------c------cCCcCccCCCccCEEEccCCcCcccCch
Q 046382           93 HDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLF------G------SFRMPIHSHQNLATLDVSNNFFHGHIPV  160 (691)
Q Consensus        93 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~------~------~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  160 (691)
                      .+++.|+|+++.+.|.+|..+ +++++|++|+|++|.+.      +      ..|...  +..|+ ++++++.+.+..|.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence            479999999999999999875 99999999999999762      2      122111  45677 88888877766665


Q ss_pred             hhhhCCC------------------CCcEEEcc--CCcccccCchhhhCCCCCCEEeccccccccc--------------
Q 046382          161 EIGTYLP------------------GLMDLNLS--RNAFNGSIPSSFADMKMLERLDISDNQLTGE--------------  206 (691)
Q Consensus       161 ~~~~~l~------------------~L~~L~L~--~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------  206 (691)
                      .+...+.                  .++.+.+.  +|++++ +|..++++++|++|++++|.+++.              
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence            5442111                  22222222  577887 888899999999999999999864              


Q ss_pred             ---cchhHh-hcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCc-Ccc-cCCccccCC------CCCCEEEccCC
Q 046382          207 ---IPERMA-TGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNK-FIG-EIPESLSKC------YLLGGLYLSDN  274 (691)
Q Consensus       207 ---~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n  274 (691)
                         +|..+. ..+++|++|++++|.+.+..|..+.++++|++|++++|+ +++ .+|..+..+      ++|+.|++++|
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence               777662 268999999999999988888889999999999999998 887 778777665      89999999999


Q ss_pred             cCCCcchh--hhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCc-ccEEEccCCcccccc
Q 046382          275 HLSGEIPR--WLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAH-IEQVHLSKNKIEGRL  351 (691)
Q Consensus       275 ~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~-L~~L~l~~n~i~~~~  351 (691)
                      .++ .+|.  .++.+++|++|++++|.+.+.+| .+..+++|++|++++|.+.........+++ |++|++++|.++ ..
T Consensus       316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l  392 (636)
T 4eco_A          316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YI  392 (636)
T ss_dssp             CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred             cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-cc
Confidence            998 7777  88999999999999999987777 888889999999999998844334446777 999999999988 45


Q ss_pred             ccccCCCC--CccEEeccCCCCCCCcchhhc-------CCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCC
Q 046382          352 ESIIHDSP--YLVTLDLSYNRLHGSIPNRID-------RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGH  422 (691)
Q Consensus       352 ~~~~~~~~--~L~~L~ls~n~i~~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  422 (691)
                      |..+..++  +|+.|++++|.+++..|..+.       .+++|++|++++|++++..+..+..+++|++|++++|+++ .
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~  471 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-E  471 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-B
T ss_pred             chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-C
Confidence            55666544  899999999999988888787       7789999999999998555555667899999999999987 5


Q ss_pred             CChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeee
Q 046382          423 IPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT  502 (691)
Q Consensus       423 ~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  502 (691)
                      +|........                                                  .....+++|++|+|++|+++
T Consensus       472 i~~~~~~~~~--------------------------------------------------~~~~~l~~L~~L~Ls~N~l~  501 (636)
T 4eco_A          472 IPKNSLKDEN--------------------------------------------------ENFKNTYLLTSIDLRFNKLT  501 (636)
T ss_dssp             CCSSSSEETT--------------------------------------------------EECTTGGGCCEEECCSSCCC
T ss_pred             cCHHHhcccc--------------------------------------------------ccccccCCccEEECcCCcCC
Confidence            5543221000                                                  00011458999999999999


Q ss_pred             eccchhhh--cccCCCeEeCCCCcCCcccchhhcCCCcCCEEeC------CCccccccCCcccccCCCCCeEEccCCccc
Q 046382          503 GEIPTQIG--YLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDL------SYNLLHGKIPPQLIVLNTLEVFKVAYNNLS  574 (691)
Q Consensus       503 ~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  574 (691)
                       .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|      ++|++.+.+|..+..+++|+.|++++|++ 
T Consensus       502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-  578 (636)
T 4eco_A          502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-  578 (636)
T ss_dssp             -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred             -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence             7888886  99999999999999997 8999999999999999      56888899999999999999999999999 


Q ss_pred             ccCCCCCCCCCcCcCcccCCCCCC
Q 046382          575 GKIPDRAQFSTFEEDSYEGNPFLC  598 (691)
Q Consensus       575 ~~~p~~~~~~~~~~~~~~~Np~~c  598 (691)
                      +.+|... ++.++.+++++||+.|
T Consensus       579 ~~ip~~~-~~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          579 RKVNEKI-TPNISVLDIKDNPNIS  601 (636)
T ss_dssp             CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred             CccCHhH-hCcCCEEECcCCCCcc
Confidence            6677642 3789999999999987

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.1e-45  Score=397.86  Aligned_cols=433  Identities=21%  Similarity=0.203  Sum_probs=248.2

Q ss_pred             cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382           70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV  149 (691)
Q Consensus        70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  149 (691)
                      +|++|++++|.+.+..+..+.++++|++|++++|++++..|.. |+++++|++|++++|++.+ +|..  .+++|++|++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH-hhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence            3444444444444443444444444555555544444322322 2444455555555554432 2222  4444555555


Q ss_pred             cCCcCcc-cCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCC--CEEecccccc--ccccchhHhhcCC-CCCEEEc
Q 046382          150 SNNFFHG-HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML--ERLDISDNQL--TGEIPERMATGCF-SLKILAL  223 (691)
Q Consensus       150 s~n~i~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~l  223 (691)
                      ++|++++ .+|..+.. +++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+ ..+. +...+++
T Consensus        98 ~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l-~~l~~~~l~l~l  172 (520)
T 2z7x_B           98 SFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL-QDFNTESLHIVF  172 (520)
T ss_dssp             CSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT-TTCCEEEEEEEC
T ss_pred             cCCccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccc-cccccceEEEEe
Confidence            5554442 22333332 4455555555554442   233344444  5555555544  32333222 1111 1123344


Q ss_pred             ccccCCccCc-ccccCCCCCCEEEccCCc-------CcccCCccccCCCCCCEEEccCCcCCCcchhhhh---cCCCCCE
Q 046382          224 SNNSLQGHIF-SKKFNLTNLMRLQLDGNK-------FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG---NLSALEG  292 (691)
Q Consensus       224 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~  292 (691)
                      ++|.+.+..+ ..+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.+++..+..+.   ..++|++
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~  251 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY  251 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence            4444433222 233345555555555554       333333 455566666666666655432222111   1346777


Q ss_pred             EecCCCccCCCcchhh-----cCCCCCCEEEccCCcCcccCCC-CC----CCCcccEEEccCCccccccccccCCCCCcc
Q 046382          293 IRMPNNNLEGPIPIEF-----CQLSALKILDLSNNSIFGTLPS-CF----SPAHIEQVHLSKNKIEGRLESIIHDSPYLV  362 (691)
Q Consensus       293 L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~~-~~----~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~  362 (691)
                      |++++|.+.+.+|..+     ..+++|+.+++++|.+  .+|. .+    ...+|+.|++++|.+....  ....+++|+
T Consensus       252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~  327 (520)
T 2z7x_B          252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL  327 (520)
T ss_dssp             EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred             EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence            7777777666666665     6677777777777766  2221 11    1245777777777765432  125677788


Q ss_pred             EEeccCCCCCCCcchhhcCCCCccEEecccCcCcc--cCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCccc
Q 046382          363 TLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKG--EIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAV  440 (691)
Q Consensus       363 ~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~  440 (691)
                      +|++++|.+++..|..+..+++|++|++++|++++  ..|..+..+++|++|++++|++++.+|....            
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~------------  395 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC------------  395 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC------------
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh------------
Confidence            88888888877677777788888888888888875  3445677788888888888888754543210            


Q ss_pred             CCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC
Q 046382          441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL  520 (691)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  520 (691)
                                                                   ..+++|++|++++|++++..|..+.  ++|++|+|
T Consensus       396 ---------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L  428 (520)
T 2z7x_B          396 ---------------------------------------------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL  428 (520)
T ss_dssp             ---------------------------------------------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred             ---------------------------------------------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence                                                         0156788888888888776666553  68889999


Q ss_pred             CCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccccc
Q 046382          521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGK  576 (691)
Q Consensus       521 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  576 (691)
                      ++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus       429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence            999888 6677777888999999999988854333488888999999999988864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1e-43  Score=401.88  Aligned_cols=354  Identities=20%  Similarity=0.269  Sum_probs=209.9

Q ss_pred             CCcCcc--CCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCc-ccc-cCchhhhCCC-------CCCEEeccccc
Q 046382          134 FRMPIH--SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNA-FNG-SIPSSFADMK-------MLERLDISDNQ  202 (691)
Q Consensus       134 ~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~  202 (691)
                      +|..++  ++++|++|+|++|.+.+.+|..+.. +++|++|++++|+ +++ .+|..++.++       +|++|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            444444  5555555555555555455544433 4555555555554 444 4444443333       55555555555


Q ss_pred             cccccch-hHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCC-CCEEEccCCcCCCcc
Q 046382          203 LTGEIPE-RMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYL-LGGLYLSDNHLSGEI  280 (691)
Q Consensus       203 l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~  280 (691)
                      ++ .+|. ..+..+++|+.|++++|.++ ..+ .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            55 4554 12244555555555555555 233 4455555555555555555 44444555555 555555555555 34


Q ss_pred             hhhhhcCCC--CCEEecCCCccCCCcchh---hc--CCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccc
Q 046382          281 PRWLGNLSA--LEGIRMPNNNLEGPIPIE---FC--QLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLE  352 (691)
Q Consensus       281 ~~~l~~l~~--L~~L~l~~n~~~~~~~~~---~~--~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~  352 (691)
                      |..+..++.  |+.|++++|.+.+.+|..   +.  .+++|+.|++++|.+.......+ .+++|+.|++++|.++.+..
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~  714 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE  714 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence            444443332  555555555555433311   11  22355666666666553322222 45556666666666554333


Q ss_pred             cccC-------CCCCccEEeccCCCCCCCcchhhc--CCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCC
Q 046382          353 SIIH-------DSPYLVTLDLSYNRLHGSIPNRID--RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI  423 (691)
Q Consensus       353 ~~~~-------~~~~L~~L~ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  423 (691)
                      ..+.       ++++|+.|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++++|+     
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-----  787 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-----  787 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-----
Confidence            3333       3348889999999888 6777776  88899999999998886 67778888888888888764     


Q ss_pred             ChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeee
Q 046382          424 PSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG  503 (691)
Q Consensus       424 p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  503 (691)
                                                                                             ++++|.+.+
T Consensus       788 -----------------------------------------------------------------------~ls~N~l~~  796 (876)
T 4ecn_A          788 -----------------------------------------------------------------------DAEGNRILR  796 (876)
T ss_dssp             -----------------------------------------------------------------------CTTCCBCCC
T ss_pred             -----------------------------------------------------------------------Ccccccccc
Confidence                                                                                   235566666


Q ss_pred             ccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccc
Q 046382          504 EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS  574 (691)
Q Consensus       504 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  574 (691)
                      .+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+..+.+.+|++.
T Consensus       797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            7777788888888888888888 46666654  57888888888887766666666556666777777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.5e-43  Score=385.83  Aligned_cols=457  Identities=19%  Similarity=0.157  Sum_probs=345.7

Q ss_pred             cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382           70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV  149 (691)
Q Consensus        70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  149 (691)
                      ..++++++++++++ +|..+.  ++|++|++++|.+++ ++...|.++++|++|++++|++.+..+..|..+++|++|++
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            45788999888875 565543  789999999999984 44434689999999999999998888888999999999999


Q ss_pred             cCCcCcccCchhhhhCCCCCcEEEccCCccccc-CchhhhCCCCCCEEeccccccccccchhHhhcCCCC--CEEEcccc
Q 046382          150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGS-IPSSFADMKMLERLDISDNQLTGEIPERMATGCFSL--KILALSNN  226 (691)
Q Consensus       150 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n  226 (691)
                      ++|+++ .+|..   .+++|++|++++|.+++. .|..|+++++|++|++++|.+++ .   .+..+++|  +.|++++|
T Consensus       108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCEEEEEEEES
T ss_pred             CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhceeeEEEeecc
Confidence            999998 78876   488999999999999863 46889999999999999999874 2   23445666  99999999


Q ss_pred             cC--CccCcccccCCC--CCCEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCC----CcchhhhhcCCCCCEEecCC
Q 046382          227 SL--QGHIFSKKFNLT--NLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNHLS----GEIPRWLGNLSALEGIRMPN  297 (691)
Q Consensus       227 ~l--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~  297 (691)
                      .+  ++..+..+..+.  .+ .+++++|.+.+..+ ..+..+++|+.+++++|...    ......+..+++|+.+++.+
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             cccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            98  777777766554  23 56778888776554 34567788999999988521    12234567888999898888


Q ss_pred             CccCCCcch---hhcCCCCCCEEEccCCcCcccCCCCC------CCCcccEEEccCCccccccccccC---CCCCccEEe
Q 046382          298 NNLEGPIPI---EFCQLSALKILDLSNNSIFGTLPSCF------SPAHIEQVHLSKNKIEGRLESIIH---DSPYLVTLD  365 (691)
Q Consensus       298 n~~~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~------~~~~L~~L~l~~n~i~~~~~~~~~---~~~~L~~L~  365 (691)
                      +.+.+....   .....++|++|++++|.+.+.+|..+      .++.|+.+++..+.+ ......+.   ...+|+.|+
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLS  337 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEE
Confidence            776532111   11234589999999999886666543      334444445555554 11111111   125799999


Q ss_pred             ccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCC--ChhhhhccccCCCCcccCCC
Q 046382          366 LSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI--PSCLVNTALSGGHHEAVAPT  443 (691)
Q Consensus       366 ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~~l~~~~~~~~~~~  443 (691)
                      +++|.+....  ....+++|++|++++|++++..|..+..+++|++|++++|++++..  |..+..              
T Consensus       338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--------------  401 (562)
T 3a79_B          338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN--------------  401 (562)
T ss_dssp             EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT--------------
T ss_pred             ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC--------------
Confidence            9999886432  1267889999999999999888889999999999999999987421  222221              


Q ss_pred             cccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccc-hhhhcccCCCeEeCCC
Q 046382          444 SIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP-TQIGYLSGIHALNLSH  522 (691)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~  522 (691)
                                                                  +++|++|++++|.+++.+| ..+..+++|++|++++
T Consensus       402 --------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~  437 (562)
T 3a79_B          402 --------------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS  437 (562)
T ss_dssp             --------------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred             --------------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence                                                        6789999999999997455 4588899999999999


Q ss_pred             CcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382          523 NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       523 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      |++++..|..+.  ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+. ...++.++.+++++|||.|+|+
T Consensus       438 n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          438 NMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             SCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            999877766554  78999999999998 6777777999999999999999965554 5667888899999999999997


Q ss_pred             CC
Q 046382          602 LS  603 (691)
Q Consensus       602 l~  603 (691)
                      ..
T Consensus       515 ~~  516 (562)
T 3a79_B          515 GI  516 (562)
T ss_dssp             HH
T ss_pred             hH
Confidence            54

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.5e-41  Score=377.00  Aligned_cols=505  Identities=19%  Similarity=0.170  Sum_probs=394.7

Q ss_pred             Cccccccccccc-ccccCCCCCCEEeCCCCCCccccCCcccccCCCCCcEEeCCCCccccccccCCCCCccccEEEecCC
Q 046382            1 MSLTINLLKTSL-ISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY   79 (691)
Q Consensus         1 l~l~~n~~~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~   79 (691)
                      |+|++|.|+.++ .+|.++++||+|+|++|++...+  ...+.++++|++|+++++.........+..+.+|++|++++|
T Consensus        57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~--~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N  134 (635)
T 4g8a_A           57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  134 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred             EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC--hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence            689999999997 58999999999999999955443  246899999999999997653333333556779999999999


Q ss_pred             CCCCCcchhhcCCCCCCEEEccCCCCccc-CchHHhhcCCCCCEEEccCCcccccCCcCccCCCc----cCEEEccCCcC
Q 046382           80 IDGGTFPKFLYHQHDLKNADLSHLNLSGQ-FPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQN----LATLDVSNNFF  154 (691)
Q Consensus        80 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~----L~~L~Ls~n~i  154 (691)
                      .+++..+..++++++|++|++++|.+.+. .|.. ++.+++|++|++++|++.+..+..+..+.+    ...++++.|.+
T Consensus       135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l  213 (635)
T 4g8a_A          135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM  213 (635)
T ss_dssp             CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred             cCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence            99987777899999999999999999753 4544 589999999999999998888877765544    34789999999


Q ss_pred             cccCchhhhhCCCCCcEEEccCCcccc-cCchhhhCCCCCCEEecccccccc-----ccchhHhhcCCCCCEEEcccccC
Q 046382          155 HGHIPVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQLTG-----EIPERMATGCFSLKILALSNNSL  228 (691)
Q Consensus       155 ~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~~L~~L~l~~n~l  228 (691)
                      + .++...+. ...++.+++.+|.... ..+..+..+..++...+..+....     ......+..+..+....+..+..
T Consensus       214 ~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~  291 (635)
T 4g8a_A          214 N-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  291 (635)
T ss_dssp             C-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred             c-ccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            8 66666655 3467889998886542 344567788888877765433211     22222334455666666665443


Q ss_pred             Cc---cCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcc
Q 046382          229 QG---HIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP  305 (691)
Q Consensus       229 ~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  305 (691)
                      ..   .....+....+++.+.+.++.+...  ..+.....++.|++.+|.+....+   ..+..|+.+++..|.....  
T Consensus       292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--  364 (635)
T 4g8a_A          292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--  364 (635)
T ss_dssp             CSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--
T ss_pred             cccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--
Confidence            32   2233445677899999988887643  336677889999999998875433   3567889999998887643  


Q ss_pred             hhhcCCCCCCEEEccCCcCcccCCC---CCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcc-hhhcC
Q 046382          306 IEFCQLSALKILDLSNNSIFGTLPS---CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIP-NRIDR  381 (691)
Q Consensus       306 ~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~-~~~~~  381 (691)
                      .....+++|+.+++++|.+......   .....+++.+++..+..... +..+..+++|+.++++++......+ ..+..
T Consensus       365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~  443 (635)
T 4g8a_A          365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS  443 (635)
T ss_dssp             CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred             cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhcccccccccccccc
Confidence            3345788999999999988643222   22678899999999987754 3457789999999999887665433 45778


Q ss_pred             CCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCC-CCChhhhhccccCCCCcccCCCcccccCcccccccccCC
Q 046382          382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG-HIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS  460 (691)
Q Consensus       382 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (691)
                      +++++.+++++|.+.+..+..+..+++++.|++++|.+.+ ..|..+..                               
T Consensus       444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~-------------------------------  492 (635)
T 4g8a_A          444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-------------------------------  492 (635)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------------------------
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh-------------------------------
Confidence            9999999999999998889999999999999999997543 23332221                               


Q ss_pred             CCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCC
Q 046382          461 RSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE  540 (691)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  540 (691)
                                                 +++|++|||++|++++..|..|.++++|++|+|++|+|++..|..|.++++|+
T Consensus       493 ---------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          493 ---------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             ---------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ---------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence                                       68899999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCccccccCCcccccC-CCCCeEEccCCccccc
Q 046382          541 SLDLSYNLLHGKIPPQLIVL-NTLEVFKVAYNNLSGK  576 (691)
Q Consensus       541 ~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~  576 (691)
                      +|||++|++++..|+.+..+ ++|++|++++|++++.
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            99999999999999999988 6899999999999863

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-40  Score=358.34  Aligned_cols=370  Identities=20%  Similarity=0.204  Sum_probs=218.4

Q ss_pred             CEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcc
Q 046382          145 ATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALS  224 (691)
Q Consensus       145 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  224 (691)
                      +.++.+++.++ .+|. +   .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            34666666666 6665 2   35777777777777766677777777777777777777656666556677777777777


Q ss_pred             cccCCccCcccccCCCCCCEEEccCCcCcccCCc--cccCCCCCCEEEccCCcCCCcchhh-hhcCCCCCEEecCCCccC
Q 046382          225 NNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE--SLSKCYLLGGLYLSDNHLSGEIPRW-LGNLSALEGIRMPNNNLE  301 (691)
Q Consensus       225 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~  301 (691)
                      +|.+++..+..+.++++|++|++++|.+.+..+.  .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            7777766667777777777777777777653333  3667777777777777777665554 667777777777777777


Q ss_pred             CCcchhhcCC--CCCCEEEccCCcCcccCCCC---------CCCCcccEEEccCCccccccccccCC---CCCccEEecc
Q 046382          302 GPIPIEFCQL--SALKILDLSNNSIFGTLPSC---------FSPAHIEQVHLSKNKIEGRLESIIHD---SPYLVTLDLS  367 (691)
Q Consensus       302 ~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~---------~~~~~L~~L~l~~n~i~~~~~~~~~~---~~~L~~L~ls  367 (691)
                      +..+..+..+  .+|+.|++++|.+.+..+..         +..++|++|++++|.+++..+..+..   .++|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            6666666554  56777777777766543322         23456777777777666554443332   2566677776


Q ss_pred             CCCCCCCcc----------hhhc--CCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCC
Q 046382          368 YNRLHGSIP----------NRID--RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGG  435 (691)
Q Consensus       368 ~n~i~~~~~----------~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~  435 (691)
                      +|...+...          ..+.  ..++|++|++++|++++..|..+..+++                           
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---------------------------  300 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD---------------------------  300 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT---------------------------
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCC---------------------------
Confidence            665442210          0111  1134444444444444444444444444                           


Q ss_pred             CCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCC
Q 046382          436 HHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGI  515 (691)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  515 (691)
                                                                             |++|++++|.+++..|..|..+++|
T Consensus       301 -------------------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L  325 (455)
T 3v47_A          301 -------------------------------------------------------LEQLTLAQNEINKIDDNAFWGLTHL  325 (455)
T ss_dssp             -------------------------------------------------------CCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             -------------------------------------------------------CCEEECCCCcccccChhHhcCcccC
Confidence                                                                   4555555555554444455555555


Q ss_pred             CeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCC
Q 046382          516 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGN  594 (691)
Q Consensus       516 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~N  594 (691)
                      ++|+|++|.+++..|..|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+. ...++.++.+++++|
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            5555555555544445555555555555555555544455555555555555555555543333 233444555555555


Q ss_pred             CCCCCCC
Q 046382          595 PFLCGKP  601 (691)
Q Consensus       595 p~~c~~~  601 (691)
                      |+.|+|+
T Consensus       406 ~l~~~~~  412 (455)
T 3v47_A          406 PWDCSCP  412 (455)
T ss_dssp             CBCCCTT
T ss_pred             CcccCCC
Confidence            5555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2e-41  Score=373.98  Aligned_cols=458  Identities=19%  Similarity=0.145  Sum_probs=334.9

Q ss_pred             CCCCcEEeCCCCccccccccCCCCCccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEE
Q 046382           44 LSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVML  123 (691)
Q Consensus        44 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L  123 (691)
                      +...++++++++....  ++.-.+ .+|++|++++|.+++..+..+.++++|++|++++|.+++..|.. |.++++|++|
T Consensus        30 ~~~~~~l~ls~~~L~~--ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L  105 (562)
T 3a79_B           30 NELESMVDYSNRNLTH--VPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQDLEYL  105 (562)
T ss_dssp             ---CCEEECTTSCCCS--CCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT-TTTCTTCCEE
T ss_pred             cCCCcEEEcCCCCCcc--CCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH-hCCCCCCCEE
Confidence            3344667777643321  211111 48888888888888777788888999999999999888554544 5888999999


Q ss_pred             EccCCcccccCCcCccCCCccCEEEccCCcCcc-cCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCC--CEEeccc
Q 046382          124 LLANNSLFGSFRMPIHSHQNLATLDVSNNFFHG-HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKML--ERLDISD  200 (691)
Q Consensus       124 ~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~L~~  200 (691)
                      ++++|++... |..  .+++|++|++++|++++ .+|..+. .+++|++|++++|.+++.   .+..+++|  ++|++++
T Consensus       106 ~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          106 DVSHNRLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             ECTTSCCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             ECCCCcCCcc-Ccc--ccccCCEEECCCCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            9999988754 333  78899999999998883 2234454 478999999999988753   34555555  9999999


Q ss_pred             ccc--ccccchhHhhcCC-CCCEEEcccccCCccCcc-cccCCCCCCEEEccCCcCc----ccCCccccCCCCCCEEEcc
Q 046382          201 NQL--TGEIPERMATGCF-SLKILALSNNSLQGHIFS-KKFNLTNLMRLQLDGNKFI----GEIPESLSKCYLLGGLYLS  272 (691)
Q Consensus       201 n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~  272 (691)
                      |.+  ++..|..+ ..+. ..-.+++++|.+.+..+. .+..+++|+.+++++|+..    ......+..++.|+.+++.
T Consensus       179 n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          179 VSYHIKGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             SSCCCCSSSCCEE-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             ccccccccCcccc-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            888  65555443 2232 112557777777654433 4456788999999887521    0112346778888888888


Q ss_pred             CCcCCCcc----hhhhhcCCCCCEEecCCCccCCCcchhh-----cCCCCCCEEEccCCcCcccCCC-C----CCCCccc
Q 046382          273 DNHLSGEI----PRWLGNLSALEGIRMPNNNLEGPIPIEF-----CQLSALKILDLSNNSIFGTLPS-C----FSPAHIE  338 (691)
Q Consensus       273 ~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~~-~----~~~~~L~  338 (691)
                      ++.+.+..    +..+ ..++|++|++++|.+.+.+|..+     ..++.|+.++++.+.+  .++. .    +...+|+
T Consensus       258 ~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          258 HIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred             CCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence            87775422    2222 24589999999999987777766     5666666666666665  2221 1    1235799


Q ss_pred             EEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCccc--CCcCCCCCCCCCEEEccC
Q 046382          339 QVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE--IPVQLCQLKEVRLIDLSH  416 (691)
Q Consensus       339 ~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~  416 (691)
                      +|++++|.+....  ....+++|+.|++++|.+++..|..+..+++|++|++++|++++.  .|..+..+++|++|++++
T Consensus       335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            9999999886442  226789999999999999988889999999999999999999863  346789999999999999


Q ss_pred             CCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEc
Q 046382          417 NNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDL  496 (691)
Q Consensus       417 n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  496 (691)
                      |++++.+|....                                                         ..+++|++|++
T Consensus       413 N~l~~~~~~~~~---------------------------------------------------------~~l~~L~~L~l  435 (562)
T 3a79_B          413 NSLNSHAYDRTC---------------------------------------------------------AWAESILVLNL  435 (562)
T ss_dssp             SCCBSCCSSCCC---------------------------------------------------------CCCTTCCEEEC
T ss_pred             CcCCCccChhhh---------------------------------------------------------cCcccCCEEEC
Confidence            999865554211                                                         11678999999


Q ss_pred             CCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccccc
Q 046382          497 SCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGK  576 (691)
Q Consensus       497 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  576 (691)
                      ++|++++..|..+.  ++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus       436 ~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             CSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            99999877776554  78999999999999 6677677999999999999999954444489999999999999999875


Q ss_pred             CC
Q 046382          577 IP  578 (691)
Q Consensus       577 ~p  578 (691)
                      .|
T Consensus       513 c~  514 (562)
T 3a79_B          513 CP  514 (562)
T ss_dssp             HH
T ss_pred             cc
Confidence            44

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.3e-40  Score=356.42  Aligned_cols=383  Identities=21%  Similarity=0.191  Sum_probs=241.1

Q ss_pred             EEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccC
Q 046382           97 NADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSR  176 (691)
Q Consensus        97 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~  176 (691)
                      .++.+++.++ .+|. +   .++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4455555554 4443 1   255666666666665555555666666666666666655455444444456666666666


Q ss_pred             CcccccCchhhhCCCCCCEEeccccccccccch-hHhhcCCCCCEEEcccccCCccCccc-ccCCCCCCEEEccCCcCcc
Q 046382          177 NAFNGSIPSSFADMKMLERLDISDNQLTGEIPE-RMATGCFSLKILALSNNSLQGHIFSK-KFNLTNLMRLQLDGNKFIG  254 (691)
Q Consensus       177 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~  254 (691)
                      |.+++..|..|+++++|++|++++|.+++.++. ..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            666655566666666666666666666533332 22345666666666666666554443 5566666666666666665


Q ss_pred             cCCccccCC--CCCCEEEccCCcCCCcchhh--------hhcCCCCCEEecCCCccCCCcchhhcCC---CCCCEEEccC
Q 046382          255 EIPESLSKC--YLLGGLYLSDNHLSGEIPRW--------LGNLSALEGIRMPNNNLEGPIPIEFCQL---SALKILDLSN  321 (691)
Q Consensus       255 ~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~--------l~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~  321 (691)
                      ..+..+..+  ..|+.|++++|.+.+..+..        +..+++|++|++++|.+.+..+..+...   ++|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            555555444  45666666666665433322        2245677777777777766555555433   6777777777


Q ss_pred             CcCcccCCCCCCCCcccEEEccCCccccccccccC--CCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccC
Q 046382          322 NSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH--DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEI  399 (691)
Q Consensus       322 n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~  399 (691)
                      |...+.....             +.+.+.....+.  ..++|+.|++++|.+++..|..+..+++|++|++++|++++..
T Consensus       249 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          249 SYNMGSSFGH-------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             CTTTSCCTTC-------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccccccch-------------hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence            7654332111             111111111122  2468999999999999888888999999999999999999887


Q ss_pred             CcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCc
Q 046382          400 PVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNM  479 (691)
Q Consensus       400 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (691)
                      +..|..+++|++|++++|.+++                                                          
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~----------------------------------------------------------  337 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGS----------------------------------------------------------  337 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCE----------------------------------------------------------
T ss_pred             hhHhcCcccCCEEECCCCccCC----------------------------------------------------------
Confidence            8888887788777777777653                                                          


Q ss_pred             cceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCccccc
Q 046382          480 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV  559 (691)
Q Consensus       480 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  559 (691)
                                              ..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..
T Consensus       338 ------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  393 (455)
T 3v47_A          338 ------------------------IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR  393 (455)
T ss_dssp             ------------------------ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ------------------------cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence                                    33445556666666677777666666666777777777777777777655556667


Q ss_pred             CCCCCeEEccCCcccccCCC
Q 046382          560 LNTLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       560 l~~L~~L~l~~N~l~~~~p~  579 (691)
                      +++|+.|++++|++++..|.
T Consensus       394 l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          394 LTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CTTCCEEECCSSCBCCCTTT
T ss_pred             CCcccEEEccCCCcccCCCc
Confidence            77777777777777766664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.5e-39  Score=341.69  Aligned_cols=287  Identities=24%  Similarity=0.252  Sum_probs=124.4

Q ss_pred             ccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCC-------------CEEEccCCcccccCC
Q 046382           69 FQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNL-------------VMLLLANNSLFGSFR  135 (691)
Q Consensus        69 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~~~  135 (691)
                      .+|++|+++++.+ +.+|..++++++|++|++++|.+.+.+|..+ +++++|             ++|++++|++++...
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence            3677777777776 5667777777777777777777666666653 455543             555555555543221


Q ss_pred             cCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcC
Q 046382          136 MPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGC  215 (691)
Q Consensus       136 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  215 (691)
                          ..++|++|++++|.++ .+|..    +++|++|++++|.+++ ++..   .++|++|++++|.++ .+|.  +..+
T Consensus        89 ----~~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l  152 (454)
T 1jl5_A           89 ----LPPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNS  152 (454)
T ss_dssp             ----CCTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred             ----CcCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCC
Confidence                1245555555555555 24421    2455555555555542 1111   135555555555555 3442  3445


Q ss_pred             CCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEec
Q 046382          216 FSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRM  295 (691)
Q Consensus       216 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  295 (691)
                      ++|++|++++|++++. +..   .++|++|++++|.+.+ +| .+..+++|+.|++++|.+++ +|..   .++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence            5555555555555431 211   2355555555555543 23 34555555555555555543 2211   134555555


Q ss_pred             CCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCc
Q 046382          296 PNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSI  375 (691)
Q Consensus       296 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~  375 (691)
                      ++|.+. .+| .+..+++|++|++++|.+.+. +.  .+++|++|++++|.+++...    ..++|+.|++++|.+++ +
T Consensus       223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~--~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~-l  292 (454)
T 1jl5_A          223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD--LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSG-L  292 (454)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSE-E
T ss_pred             cCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc--cccccCEEECCCCcccccCc----ccCcCCEEECcCCccCc-c
Confidence            555554 233 244555555555555554432 11  12445555555555443211    12445555555554442 1


Q ss_pred             chhhcCCCCccEEecccCcCc
Q 046382          376 PNRIDRLPQLNYLLLAHNYIK  396 (691)
Q Consensus       376 ~~~~~~l~~L~~L~L~~n~i~  396 (691)
                      +.   ..++|++|++++|+++
T Consensus       293 ~~---~~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          293 SE---LPPNLYYLNASSNEIR  310 (454)
T ss_dssp             SC---CCTTCCEEECCSSCCS
T ss_pred             cC---cCCcCCEEECcCCcCC
Confidence            11   0134455555555444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.6e-38  Score=338.68  Aligned_cols=392  Identities=22%  Similarity=0.261  Sum_probs=257.2

Q ss_pred             CCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCcc-------------CEEEccCCcCcccC
Q 046382           92 QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNL-------------ATLDVSNNFFHGHI  158 (691)
Q Consensus        92 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------------~~L~Ls~n~i~~~~  158 (691)
                      .+.|++|++++|.+ +.+|..+ +++++|++|++++|++.+..|..++.+.+|             ++|++++|.++ .+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l   86 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred             cccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence            46789999999988 6888875 889999999999999888888888888765             89999999888 56


Q ss_pred             chhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccC
Q 046382          159 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN  238 (691)
Q Consensus       159 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  238 (691)
                      |.    ..++|++|++++|.+++ +|..   +++|++|++++|.++ .++.    ..++|++|++++|.+++ .+ .+..
T Consensus        87 p~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~  151 (454)
T 1jl5_A           87 PE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQN  151 (454)
T ss_dssp             CS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTT
T ss_pred             CC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCC
Confidence            65    24689999999999886 5543   478999999999887 4543    12689999999999886 44 5888


Q ss_pred             CCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEE
Q 046382          239 LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILD  318 (691)
Q Consensus       239 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  318 (691)
                      +++|++|++++|++++ +|..+   .+|+.|++++|.+++ +| .++.+++|++|++++|.+++ +|..   .++|++|+
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred             CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence            9999999999998875 45433   589999999999886 45 58888999999999998875 3322   25889999


Q ss_pred             ccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCccc
Q 046382          319 LSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE  398 (691)
Q Consensus       319 L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~  398 (691)
                      +++|.+. .++....+++|++|++++|++++...    .+++|+.|++++|++++ +|..   +++|++|++++|++++.
T Consensus       222 l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          222 AGNNILE-ELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred             CcCCcCC-cccccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence            9999888 45555578899999999998886432    34789999999999885 4443   47899999999998863


Q ss_pred             CCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecC
Q 046382          399 IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKN  478 (691)
Q Consensus       399 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (691)
                       +.   ..++|+.|++++|++++ ++.                                                     
T Consensus       293 -~~---~~~~L~~L~l~~N~l~~-i~~-----------------------------------------------------  314 (454)
T 1jl5_A          293 -SE---LPPNLYYLNASSNEIRS-LCD-----------------------------------------------------  314 (454)
T ss_dssp             -SC---CCTTCCEEECCSSCCSE-ECC-----------------------------------------------------
T ss_pred             -cC---cCCcCCEEECcCCcCCc-ccC-----------------------------------------------------
Confidence             21   12688999999998863 111                                                     


Q ss_pred             ccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccc--cCCcc
Q 046382          479 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG--KIPPQ  556 (691)
Q Consensus       479 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~  556 (691)
                              ..++|++|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|..
T Consensus       315 --------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~  378 (454)
T 1jl5_A          315 --------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPES  378 (454)
T ss_dssp             --------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             --------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHH
Confidence                    03578888898888885 5543   5788889999988884 555   46888899999998887  67777


Q ss_pred             cccC-------------CCCCeEEccCCcccc--cCCCCCCCCCcCcCcccCCCCCCC
Q 046382          557 LIVL-------------NTLEVFKVAYNNLSG--KIPDRAQFSTFEEDSYEGNPFLCG  599 (691)
Q Consensus       557 l~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~Np~~c~  599 (691)
                      +..+             ++|+.|++++|++++  .+|     .++..+.+.+|.+.|.
T Consensus       379 l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~~~~~~  431 (454)
T 1jl5_A          379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP-----ESVEDLRMNSERVVDP  431 (454)
T ss_dssp             CCEEECCC--------------------------------------------------
T ss_pred             HHhhhhcccccccccccCcCCEEECCCCcCCccccch-----hhHhheeCcCcccCCc
Confidence            7776             789999999999987  444     3556666777666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.4e-36  Score=322.42  Aligned_cols=345  Identities=26%  Similarity=0.363  Sum_probs=202.6

Q ss_pred             CCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcE
Q 046382           92 QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMD  171 (691)
Q Consensus        92 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~  171 (691)
                      ++++++|+++++.+. .+|.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.++ .++.  +..+++|++
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCE
Confidence            345677777776665 4554  4566777777777776655433  666677777777777666 3333  333667777


Q ss_pred             EEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCc
Q 046382          172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNK  251 (691)
Q Consensus       172 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  251 (691)
                      |++++|.+++. +. +.++++|++|++++|.+. .++.  +..+++|+.|+++ +.+.+.  ..+..+++|+.|++++|.
T Consensus       117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCCC-hH-HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence            77777766643 22 666777777777777666 3442  3556666666665 333322  225556666666666666


Q ss_pred             CcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCC
Q 046382          252 FIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSC  331 (691)
Q Consensus       252 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  331 (691)
                      +.+.  ..+..+++|+.|++++|.+.+..+  ++.+++|++|++++|.+.+.  ..+..+++|++|++++|.+       
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l-------  255 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI-------  255 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC-------
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc-------
Confidence            5432  235555566666666665554333  44555555555555555432  2344445555555555544       


Q ss_pred             CCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCE
Q 046382          332 FSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRL  411 (691)
Q Consensus       332 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  411 (691)
                                      ++..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.
T Consensus       256 ----------------~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  313 (466)
T 1o6v_A          256 ----------------SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY  313 (466)
T ss_dssp             ----------------CCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred             ----------------ccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence                            43322  4555566666666666654322  5556666666666666654332  556666666


Q ss_pred             EEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecccccccc
Q 046382          412 IDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSM  491 (691)
Q Consensus       412 L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  491 (691)
                      |++++|++++..|  +..                                                          +++|
T Consensus       314 L~L~~n~l~~~~~--~~~----------------------------------------------------------l~~L  333 (466)
T 1o6v_A          314 LTLYFNNISDISP--VSS----------------------------------------------------------LTKL  333 (466)
T ss_dssp             EECCSSCCSCCGG--GGG----------------------------------------------------------CTTC
T ss_pred             EECcCCcCCCchh--hcc----------------------------------------------------------CccC
Confidence            6666666654332  111                                                          4566


Q ss_pred             ceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccc
Q 046382          492 SGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG  551 (691)
Q Consensus       492 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  551 (691)
                      ++|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            6777777766643  356677777777777777776655  6677777777777777764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.5e-36  Score=323.04  Aligned_cols=356  Identities=23%  Similarity=0.321  Sum_probs=265.9

Q ss_pred             CCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccC
Q 046382          104 NLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSI  183 (691)
Q Consensus       104 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~  183 (691)
                      .+.+.++.   ..++++++|+++++.+... + .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+..
T Consensus        35 ~~~~~i~~---~~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~  106 (466)
T 1o6v_A           35 NVTDTVSQ---TDLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT  106 (466)
T ss_dssp             STTSEECH---HHHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccCh---hHhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccCh
Confidence            34444443   3467888899988887553 3 3777888888888888888 5554  344788888888888888544


Q ss_pred             chhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCC
Q 046382          184 PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKC  263 (691)
Q Consensus       184 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  263 (691)
                      +  +.++++|++|++++|.++ .++.  +..+++|++|++++|.+.+.  ..+..+++|+.|++++ .+.+.  ..+..+
T Consensus       107 ~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l  176 (466)
T 1o6v_A          107 P--LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANL  176 (466)
T ss_dssp             G--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTC
T ss_pred             h--hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccC
Confidence            3  888888888888888887 4554  46788888888888887753  2466777777777753 33322  225666


Q ss_pred             CCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEcc
Q 046382          264 YLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLS  343 (691)
Q Consensus       264 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~  343 (691)
                      ++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++                       +
T Consensus       177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l-----------------------~  229 (466)
T 1o6v_A          177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL-----------------------N  229 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEEC-----------------------C
T ss_pred             CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEEC-----------------------C
Confidence            6666666666666532  235555566666666665554333  344444555555                       4


Q ss_pred             CCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCC
Q 046382          344 KNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHI  423 (691)
Q Consensus       344 ~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  423 (691)
                      +|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++.+..
T Consensus       230 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  303 (466)
T 1o6v_A          230 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS  303 (466)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG
T ss_pred             CCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch
Confidence            4444433  346778999999999999996654  8899999999999999986544  889999999999999997533


Q ss_pred             ChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeee
Q 046382          424 PSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG  503 (691)
Q Consensus       424 p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  503 (691)
                      |  +.                                                          .+++|++|++++|++++
T Consensus       304 ~--~~----------------------------------------------------------~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          304 P--IS----------------------------------------------------------NLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             G--GG----------------------------------------------------------GCTTCSEEECCSSCCSC
T ss_pred             h--hc----------------------------------------------------------CCCCCCEEECcCCcCCC
Confidence            2  11                                                          16899999999999997


Q ss_pred             ccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccccc
Q 046382          504 EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGK  576 (691)
Q Consensus       504 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  576 (691)
                      ..|  +..+++|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            665  78999999999999999965  468999999999999999998877  88999999999999999985

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5e-37  Score=332.15  Aligned_cols=345  Identities=18%  Similarity=0.179  Sum_probs=190.2

Q ss_pred             EEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCC
Q 046382          195 RLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN  274 (691)
Q Consensus       195 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  274 (691)
                      .++.+++.++ .+|..+   .++++.|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|+.|++++|
T Consensus        15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            3444444444 444432   234555555555555544445555555555555555555555555555555555555555


Q ss_pred             cCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCcccccccc
Q 046382          275 HLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLES  353 (691)
Q Consensus       275 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~  353 (691)
                      .+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            5554444445555555555555555554445555555555555555555554444333 445555555555555555555


Q ss_pred             ccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhcccc
Q 046382          354 IIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALS  433 (691)
Q Consensus       354 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~  433 (691)
                      .+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|+.|++++|.+++..+..+..    
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----  246 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH----  246 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT----
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC----
Confidence            5556666666666666666554455566666666666666555555544444456666666666665221122221    


Q ss_pred             CCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhccc
Q 046382          434 GGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLS  513 (691)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  513 (691)
                                                                            +++|++|+|++|.+++..+..|..++
T Consensus       247 ------------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (477)
T 2id5_A          247 ------------------------------------------------------LVYLRFLNLSYNPISTIEGSMLHELL  272 (477)
T ss_dssp             ------------------------------------------------------CTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred             ------------------------------------------------------ccccCeeECCCCcCCccChhhccccc
Confidence                                                                  45666666666666655555666666


Q ss_pred             CCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccC
Q 046382          514 GIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEG  593 (691)
Q Consensus       514 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~  593 (691)
                      +|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+....+.......+.+
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~  352 (477)
T 2id5_A          273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNR  352 (477)
T ss_dssp             TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTT
T ss_pred             cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCc
Confidence            66666666666666666666666666666666666665555556666666666666666654322111111222344555


Q ss_pred             CCCCCCCC
Q 046382          594 NPFLCGKP  601 (691)
Q Consensus       594 Np~~c~~~  601 (691)
                      +...|..|
T Consensus       353 ~~~~C~~p  360 (477)
T 2id5_A          353 QQPTCATP  360 (477)
T ss_dssp             CCCBEEES
T ss_pred             cCceeCCc
Confidence            56666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.1e-37  Score=328.08  Aligned_cols=366  Identities=19%  Similarity=0.161  Sum_probs=227.1

Q ss_pred             CCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCccc
Q 046382           78 GYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGH  157 (691)
Q Consensus        78 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~  157 (691)
                      .+......+..++++++|++|++++|.+++ +|.  ++.+++|++|++++|++.+. +  +..+++|++|++++|+++ .
T Consensus        27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~   99 (457)
T 3bz5_A           27 AFEMQATDTISEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-N   99 (457)
T ss_dssp             HTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-C
T ss_pred             hcCcCcccccChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-e
Confidence            333444445566677778888888887773 453  47778888888888877664 2  677777777777777777 3


Q ss_pred             CchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCccccc
Q 046382          158 IPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF  237 (691)
Q Consensus       158 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  237 (691)
                      ++  + ..+++|++|++++|.+++. +  ++.+++|++|++++|+++ .++   +..+++|++|++++|...+..  .+.
T Consensus       100 ~~--~-~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~  167 (457)
T 3bz5_A          100 LD--V-TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVT  167 (457)
T ss_dssp             CC--C-TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCT
T ss_pred             ee--c-CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccc
Confidence            43  3 3467777777777777753 3  667777777777777776 343   345667777777776433322  355


Q ss_pred             CCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEE
Q 046382          238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKIL  317 (691)
Q Consensus       238 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  317 (691)
                      .+++|+.|++++|++++ +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|.+++ +|  +..+++|++|
T Consensus       168 ~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L  238 (457)
T 3bz5_A          168 PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF  238 (457)
T ss_dssp             TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred             cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence            56666666666666654 22  55566666666666666543   24555566666666665554 22  4455555555


Q ss_pred             EccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcc
Q 046382          318 DLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKG  397 (691)
Q Consensus       318 ~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~  397 (691)
                      ++++|.+.+..  ...+++|+.|++++|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|+..+
T Consensus       239 ~l~~N~l~~~~--~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~  300 (457)
T 3bz5_A          239 DCSVNPLTELD--VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY  300 (457)
T ss_dssp             ECCSSCCSCCC--CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred             EeeCCcCCCcC--HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence            55555555432  112344444444432              23334444444443333  2334444444444444433


Q ss_pred             cCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEec
Q 046382          398 EIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTK  477 (691)
Q Consensus       398 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (691)
                      .+|.   ..++|+.|++++                                                             
T Consensus       301 ~l~~---~~~~L~~L~l~~-------------------------------------------------------------  316 (457)
T 3bz5_A          301 LLDC---QAAGITELDLSQ-------------------------------------------------------------  316 (457)
T ss_dssp             EEEC---TTCCCSCCCCTT-------------------------------------------------------------
T ss_pred             eecc---CCCcceEechhh-------------------------------------------------------------
Confidence            3332   122233332222                                                             


Q ss_pred             CccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCccc
Q 046382          478 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL  557 (691)
Q Consensus       478 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  557 (691)
                                .++|++|++++|++++. +  ++.+++|+.|++++|++++        ++.|+.|++++|.+++.     
T Consensus       317 ----------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----  370 (457)
T 3bz5_A          317 ----------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----  370 (457)
T ss_dssp             ----------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----
T ss_pred             ----------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----
Confidence                      35788999999999974 3  8889999999999999985        35677788999999876     


Q ss_pred             ccCCCCCeEEccCCcccccCCC
Q 046382          558 IVLNTLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       558 ~~l~~L~~L~l~~N~l~~~~p~  579 (691)
                      ..+..|+.+++++|+++|.+|.
T Consensus       371 ~~~~~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          371 GQTITMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             EEEEECCCBCCBTTBEEEECCT
T ss_pred             ceeeecCccccccCcEEEEcCh
Confidence            2445678889999999999886

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=326.50  Aligned_cols=325  Identities=20%  Similarity=0.163  Sum_probs=290.7

Q ss_pred             CEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCC
Q 046382          219 KILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNN  298 (691)
Q Consensus       219 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  298 (691)
                      +.++.+++.++.. |..+  .++++.|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFVAV-PEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCcC-CCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            5778888888754 4433  468999999999999888889999999999999999999888999999999999999999


Q ss_pred             ccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcch
Q 046382          299 NLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPN  377 (691)
Q Consensus       299 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~  377 (691)
                      .+.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            9997777778999999999999999998877666 789999999999999999889999999999999999999987778


Q ss_pred             hhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccc
Q 046382          378 RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISAC  457 (691)
Q Consensus       378 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  457 (691)
                      .+..+++|+.|++++|.+.+..+..|..+++|+.|++++|+..+.+|.....                            
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------------------  222 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY----------------------------  222 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT----------------------------
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc----------------------------
Confidence            8999999999999999999888889999999999999999887655543221                            


Q ss_pred             cCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCC
Q 046382          458 LPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLK  537 (691)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  537 (691)
                                                    ..+|++|++++|.+++..+..+..+++|+.|+|++|.+++..+..|.+++
T Consensus       223 ------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (477)
T 2id5_A          223 ------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL  272 (477)
T ss_dssp             ------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred             ------------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence                                          34899999999999965557899999999999999999988888999999


Q ss_pred             cCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCCC
Q 046382          538 QIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLSK  604 (691)
Q Consensus       538 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~~  604 (691)
                      +|+.|+|++|++++..|..|..+++|+.|++++|++++..+. ...+..++.+++++|||.|+|++.|
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~  340 (477)
T 2id5_A          273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW  340 (477)
T ss_dssp             TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred             cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence            999999999999999999999999999999999999987665 3557788999999999999997643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1e-34  Score=309.53  Aligned_cols=356  Identities=20%  Similarity=0.165  Sum_probs=271.6

Q ss_pred             CccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEE
Q 046382           68 KFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATL  147 (691)
Q Consensus        68 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  147 (691)
                      +.+|++|++++|.+++. | .+..+++|++|++++|.+++ +|   ++.+++|++|++++|++.+.   .+..+++|++|
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L  111 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYL  111 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---ecCCCCcCCEE
Confidence            33777777777777754 4 57788888888888888874 44   57888888888888888764   27788888888


Q ss_pred             EccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEccccc
Q 046382          148 DVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNS  227 (691)
Q Consensus       148 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  227 (691)
                      ++++|+++ .++  + ..+++|++|++++|.+++. +  ++.+++|++|++++|...+.++   +..+++|+.|++++|+
T Consensus       112 ~L~~N~l~-~l~--~-~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          112 NCDTNKLT-KLD--V-SQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             ECCSSCCS-CCC--C-TTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred             ECCCCcCC-eec--C-CCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc
Confidence            88888888 455  3 3478888999988888864 2  7788889999998885544553   3568889999999998


Q ss_pred             CCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchh
Q 046382          228 LQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE  307 (691)
Q Consensus       228 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  307 (691)
                      +++..   +..+++|+.|++++|.+++.   .+..+++|+.|++++|++++ +|  +..+++|+.|++++|.+++..   
T Consensus       182 l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---  249 (457)
T 3bz5_A          182 ITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---  249 (457)
T ss_dssp             CCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---
T ss_pred             cceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---
Confidence            88742   67788899999999988764   37788899999999999986 44  778899999999999988653   


Q ss_pred             hcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccE
Q 046382          308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNY  387 (691)
Q Consensus       308 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  387 (691)
                      +..+++|+.|++++|.             |+.|++++|...+..+  +..+++|+.|++++|...+.+|.   ..++|+.
T Consensus       250 ~~~l~~L~~L~l~~n~-------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~  311 (457)
T 3bz5_A          250 VSTLSKLTTLHCIQTD-------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITE  311 (457)
T ss_dssp             CTTCTTCCEEECTTCC-------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSC
T ss_pred             HHHCCCCCEEeccCCC-------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceE
Confidence            4567788888887763             5567788887666554  46788999999999987766663   3455666


Q ss_pred             EecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCC
Q 046382          388 LLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG  467 (691)
Q Consensus       388 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (691)
                      |++++|             ++|++|++++|++++. +  +..                                      
T Consensus       312 L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~--------------------------------------  337 (457)
T 3bz5_A          312 LDLSQN-------------PKLVYLYLNNTELTEL-D--VSH--------------------------------------  337 (457)
T ss_dssp             CCCTTC-------------TTCCEEECTTCCCSCC-C--CTT--------------------------------------
T ss_pred             echhhc-------------ccCCEEECCCCccccc-c--ccc--------------------------------------
Confidence            655544             6788889998888752 2  111                                      


Q ss_pred             CcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCc
Q 046382          468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN  547 (691)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  547 (691)
                                          +++|+.|++++|++++        ++.|..|++++|.+.|.     ..+..|+.+++++|
T Consensus       338 --------------------l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N  384 (457)
T 3bz5_A          338 --------------------NTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN  384 (457)
T ss_dssp             --------------------CTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred             --------------------CCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC
Confidence                                5788889999998885        34567778888888865     35677888899999


Q ss_pred             cccccCCccccc
Q 046382          548 LLHGKIPPQLIV  559 (691)
Q Consensus       548 ~l~~~~p~~l~~  559 (691)
                      +++|.+|..+..
T Consensus       385 ~l~g~ip~~~~~  396 (457)
T 3bz5_A          385 SLTIAVSPDLLD  396 (457)
T ss_dssp             BEEEECCTTCBC
T ss_pred             cEEEEcChhHhc
Confidence            999988876543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.7e-35  Score=307.81  Aligned_cols=335  Identities=18%  Similarity=0.181  Sum_probs=177.0

Q ss_pred             CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEE
Q 046382          166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL  245 (691)
Q Consensus       166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  245 (691)
                      ++++++|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            356666666666666444444566666666666666665 4444444556666666666666665555555666666666


Q ss_pred             EccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382          246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF  325 (691)
Q Consensus       246 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  325 (691)
                      ++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            6666666543333445566666666666666555555555566666666666655532   2334455555555555544


Q ss_pred             ccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCC
Q 046382          326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ  405 (691)
Q Consensus       326 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  405 (691)
                      +..    .+++|++|++++|.+......   ..++|+.|++++|.+++.  .++..+++|++|++++|++++..|..+..
T Consensus       200 ~~~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          200 TLA----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             EEE----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             ccC----CCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence            221    123455555555544433211   123444444444444422  23444444444444444444444444444


Q ss_pred             CCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecc
Q 046382          406 LKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQG  485 (691)
Q Consensus       406 l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (691)
                      +++|++|+                                                                        
T Consensus       271 l~~L~~L~------------------------------------------------------------------------  278 (390)
T 3o6n_A          271 MQRLERLY------------------------------------------------------------------------  278 (390)
T ss_dssp             CSSCCEEE------------------------------------------------------------------------
T ss_pred             cccCCEEE------------------------------------------------------------------------
Confidence            44444444                                                                        


Q ss_pred             ccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCe
Q 046382          486 RILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEV  565 (691)
Q Consensus       486 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  565 (691)
                                +++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.. +  +..+++|+.
T Consensus       279 ----------L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~  343 (390)
T 3o6n_A          279 ----------ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN  343 (390)
T ss_dssp             ----------CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred             ----------CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence                      44444442 2333445556666666666665 3444455666666666666666543 2  445566666


Q ss_pred             EEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCC
Q 046382          566 FKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       566 L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      |++++|++.+.-. ...+..+....+.+++..|.++
T Consensus       344 L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          344 LTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             EECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred             EEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence            6666666654211 1223344445566777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.9e-34  Score=315.81  Aligned_cols=335  Identities=18%  Similarity=0.181  Sum_probs=192.2

Q ss_pred             CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEE
Q 046382          166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL  245 (691)
Q Consensus       166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  245 (691)
                      +++++.+++++|.+....+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            356677777777766555555666777777777777766 4444344566667777777776666666666666666666


Q ss_pred             EccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382          246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF  325 (691)
Q Consensus       246 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  325 (691)
                      ++++|.+.+..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..   +..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            66666666444444566666666666666666655656666666666666666665432   344556666666666554


Q ss_pred             ccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCC
Q 046382          326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ  405 (691)
Q Consensus       326 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  405 (691)
                      +..    .+++|+.|++++|.+....+..   .++|+.|++++|.+++.  .++..+++|++|++++|.+++..|..|..
T Consensus       206 ~l~----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          206 TLA----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             EEE----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             ccc----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence            321    2334555555555554332221   23455555555554431  33444444444444444444444444444


Q ss_pred             CCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecc
Q 046382          406 LKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQG  485 (691)
Q Consensus       406 l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (691)
                      +++|+                                                                           
T Consensus       277 l~~L~---------------------------------------------------------------------------  281 (597)
T 3oja_B          277 MQRLE---------------------------------------------------------------------------  281 (597)
T ss_dssp             CSSCC---------------------------------------------------------------------------
T ss_pred             ccCCC---------------------------------------------------------------------------
Confidence            44444                                                                           


Q ss_pred             ccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCe
Q 046382          486 RILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEV  565 (691)
Q Consensus       486 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  565 (691)
                             .|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++..   +..+++|+.
T Consensus       282 -------~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~  349 (597)
T 3oja_B          282 -------RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN  349 (597)
T ss_dssp             -------EEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred             -------EEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence                   44444444442 3444455666666666666666 45555666667777777777666442   445667777


Q ss_pred             EEccCCcccccCCCCCCCCCcCcCcccCCCCCCCCC
Q 046382          566 FKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       566 L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      |++++|++.+..+ ...+..+....+.+++..|+.+
T Consensus       350 L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          350 LTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             EECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred             EEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence            7777777765321 1223444455567777777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-33  Score=294.47  Aligned_cols=264  Identities=22%  Similarity=0.249  Sum_probs=175.3

Q ss_pred             CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEE
Q 046382          142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL  221 (691)
Q Consensus       142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  221 (691)
                      ++++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEE
Confidence            45555555555555 455554444555666666666555555555556666666666666655 3443334555666666


Q ss_pred             EcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccC
Q 046382          222 ALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE  301 (691)
Q Consensus       222 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  301 (691)
                      ++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.   .+..+++|+.|++++|.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            6666666544444445566666666666666655555566666666666666666543   2445667777777777665


Q ss_pred             CCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcC
Q 046382          302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDR  381 (691)
Q Consensus       302 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~  381 (691)
                      +     +...++|++|++++|.+......  ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|..+..
T Consensus       200 ~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          200 T-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             E-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             c-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence            3     23345788888888887755332  257899999999988865  46888999999999999999888899999


Q ss_pred             CCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382          382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS  420 (691)
Q Consensus       382 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  420 (691)
                      +++|++|++++|++++ ++..+..+++|++|++++|++.
T Consensus       271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~  308 (390)
T 3o6n_A          271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  308 (390)
T ss_dssp             CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence            9999999999999985 3444556666666666666664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.6e-33  Score=286.80  Aligned_cols=304  Identities=22%  Similarity=0.308  Sum_probs=183.5

Q ss_pred             CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEE
Q 046382          166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL  245 (691)
Q Consensus       166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  245 (691)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.++..  ..+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            4677777777777763 33 3666777777777777776 4444  45667777777777766642  345666666666


Q ss_pred             EccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382          246 QLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF  325 (691)
Q Consensus       246 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  325 (691)
                      ++++|.+.+.. . +..+++|+.|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+ 
T Consensus       116 ~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l-  189 (347)
T 4fmz_A          116 YLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-  189 (347)
T ss_dssp             ECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC-
T ss_pred             ECcCCcccCch-h-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc-
Confidence            66666665332 2 5556666666666664433322 25555556666666555553322  44555555555555544 


Q ss_pred             ccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCC
Q 046382          326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ  405 (691)
Q Consensus       326 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  405 (691)
                                            .+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|++++..+  +..
T Consensus       190 ----------------------~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~  241 (347)
T 4fmz_A          190 ----------------------EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN  241 (347)
T ss_dssp             ----------------------CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             ----------------------ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence                                  33322  4455666666666666654332  5556666666666666654332  566


Q ss_pred             CCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecc
Q 046382          406 LKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQG  485 (691)
Q Consensus       406 l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (691)
                      +++|++|++++|.+++. + .+.                                                         
T Consensus       242 l~~L~~L~l~~n~l~~~-~-~~~---------------------------------------------------------  262 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISDI-N-AVK---------------------------------------------------------  262 (347)
T ss_dssp             CTTCCEEECCSSCCCCC-G-GGT---------------------------------------------------------
T ss_pred             CCCCCEEECCCCccCCC-h-hHh---------------------------------------------------------
Confidence            66666666666666521 1 110                                                         


Q ss_pred             ccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCe
Q 046382          486 RILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEV  565 (691)
Q Consensus       486 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  565 (691)
                       .+++|++|++++|.+++.  ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|  +..+++|+.
T Consensus       263 -~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  337 (347)
T 4fmz_A          263 -DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS  337 (347)
T ss_dssp             -TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred             -cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence             145667777777776643  346677777777777777777777777777777777777777776555  667777777


Q ss_pred             EEccCCccc
Q 046382          566 FKVAYNNLS  574 (691)
Q Consensus       566 L~l~~N~l~  574 (691)
                      |++++|+++
T Consensus       338 L~l~~N~i~  346 (347)
T 4fmz_A          338 ADFANQVIK  346 (347)
T ss_dssp             ESSSCC---
T ss_pred             eehhhhccc
Confidence            777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=9.7e-33  Score=285.55  Aligned_cols=306  Identities=20%  Similarity=0.274  Sum_probs=212.7

Q ss_pred             cCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCC
Q 046382           90 YHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGL  169 (691)
Q Consensus        90 ~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L  169 (691)
                      ..+++|++|+++++.+. .++.  +..+++|++|++++|++.+..+  +..+++|++|++++|.++ .++ . +..+++|
T Consensus        41 ~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~-~-~~~l~~L  112 (347)
T 4fmz_A           41 EELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-A-LQNLTNL  112 (347)
T ss_dssp             HHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-G-GTTCTTC
T ss_pred             hhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch-H-HcCCCcC
Confidence            34566777777776665 4443  4667777777777776654433  666777777777777666 443 2 3336677


Q ss_pred             cEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccC
Q 046382          170 MDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDG  249 (691)
Q Consensus       170 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  249 (691)
                      ++|++++|.+.+. +. +..+++|++|++++|.....++.  +..+++|++|++++|.+.+..+  +..+++|++|++++
T Consensus       113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY  186 (347)
T ss_dssp             SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred             CEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence            7777777776643 22 66777777777777754433333  3567777777777777665433  56677777777777


Q ss_pred             CcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCC
Q 046382          250 NKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLP  329 (691)
Q Consensus       250 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  329 (691)
                      |.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+. +
T Consensus       187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~  259 (347)
T 4fmz_A          187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N  259 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G
T ss_pred             Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h
Confidence            77664322  6677777777777777765443  6677788888888887775433  67778888888888877653 3


Q ss_pred             CCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCC
Q 046382          330 SCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV  409 (691)
Q Consensus       330 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  409 (691)
                      ....+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|  +..+++|
T Consensus       260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM  335 (347)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred             hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence            344677888888888888765  357788899999999999988888888899999999999999886655  7788999


Q ss_pred             CEEEccCCCCC
Q 046382          410 RLIDLSHNNLS  420 (691)
Q Consensus       410 ~~L~l~~n~l~  420 (691)
                      ++|++++|+++
T Consensus       336 ~~L~l~~N~i~  346 (347)
T 4fmz_A          336 DSADFANQVIK  346 (347)
T ss_dssp             SEESSSCC---
T ss_pred             ceeehhhhccc
Confidence            99999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.4e-34  Score=288.81  Aligned_cols=258  Identities=32%  Similarity=0.546  Sum_probs=206.3

Q ss_pred             CCCEEEccCCcCCC--cchhhhhcCCCCCEEecCC-CccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEE
Q 046382          265 LLGGLYLSDNHLSG--EIPRWLGNLSALEGIRMPN-NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVH  341 (691)
Q Consensus       265 ~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~  341 (691)
                      +++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..++                       +|++|+
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-----------------------~L~~L~  107 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-----------------------QLHYLY  107 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-----------------------TCSEEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-----------------------CCCEEE
Confidence            45555555555554  4455555555555555552 444444444444444                       455555


Q ss_pred             ccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCC-CCCEEEccCCCCC
Q 046382          342 LSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK-EVRLIDLSHNNLS  420 (691)
Q Consensus       342 l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~  420 (691)
                      +++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+++
T Consensus       108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence            555555555666677788888888888888888888888899999999999999888888888887 8999999999998


Q ss_pred             CCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCe
Q 046382          421 GHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK  500 (691)
Q Consensus       421 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  500 (691)
                      +.+|..+..                                                          ++ |++|++++|.
T Consensus       188 ~~~~~~~~~----------------------------------------------------------l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          188 GKIPPTFAN----------------------------------------------------------LN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCGGGGG----------------------------------------------------------CC-CSEEECCSSE
T ss_pred             ccCChHHhC----------------------------------------------------------Cc-ccEEECcCCc
Confidence            777776543                                                          33 8999999999


Q ss_pred             eeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCC
Q 046382          501 LTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR  580 (691)
Q Consensus       501 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  580 (691)
                      +++..|..+..+++|+.|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9999999999999999999999999976666 889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCcCcccCCCCCCCCCCCCCC
Q 046382          581 AQFSTFEEDSYEGNPFLCGKPLSKSC  606 (691)
Q Consensus       581 ~~~~~~~~~~~~~Np~~c~~~l~~~c  606 (691)
                      ..++.++.+++.|||++|+.|+. .|
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccccccChHHhcCCCCccCCCCC-CC
Confidence            88999999999999999998765 35

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.6e-33  Score=308.66  Aligned_cols=313  Identities=21%  Similarity=0.217  Sum_probs=240.7

Q ss_pred             CCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 046382          190 MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGL  269 (691)
Q Consensus       190 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  269 (691)
                      +.+++.+++++|.+. .+|..++..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            567888888888887 7887777788888888888888887777777778888888888888777666667777777777


Q ss_pred             EccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCcccc
Q 046382          270 YLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEG  349 (691)
Q Consensus       270 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~  349 (691)
                      ++++|.+++..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.                      
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------  186 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------------------  186 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----------------------
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----------------------
Confidence            7777777755555566777777777777777666666666666666666666665532                      


Q ss_pred             ccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhh
Q 046382          350 RLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN  429 (691)
Q Consensus       350 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  429 (691)
                       .   +..+++|+.|++++|.+++     +...++|+.|++++|.+....+..   .++|+.|++++|.+++.  ..+..
T Consensus       187 -~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~  252 (597)
T 3oja_B          187 -D---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN  252 (597)
T ss_dssp             -C---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG
T ss_pred             -C---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc
Confidence             1   2334566666666666653     234456778888888776443322   36788999999988742  22221


Q ss_pred             ccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhh
Q 046382          430 TALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI  509 (691)
Q Consensus       430 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  509 (691)
                                                                                +++|+.|+|++|.+++..|..|
T Consensus       253 ----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          253 ----------------------------------------------------------YPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             ----------------------------------------------------------CTTCSEEECCSSCCCEEESGGG
T ss_pred             ----------------------------------------------------------CCCCCEEECCCCccCCCCHHHh
Confidence                                                                      6789999999999999999999


Q ss_pred             hcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcC
Q 046382          510 GYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEED  589 (691)
Q Consensus       510 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~  589 (691)
                      ..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..  ...++.++.+
T Consensus       275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L  350 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNL  350 (597)
T ss_dssp             TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEE
T ss_pred             cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEE
Confidence            999999999999999995 5777788999999999999999 67778899999999999999998763  4567789999


Q ss_pred             cccCCCCCCCCC
Q 046382          590 SYEGNPFLCGKP  601 (691)
Q Consensus       590 ~~~~Np~~c~~~  601 (691)
                      ++++|||.|+|.
T Consensus       351 ~l~~N~~~~~~~  362 (597)
T 3oja_B          351 TLSHNDWDCNSL  362 (597)
T ss_dssp             ECCSSCEEHHHH
T ss_pred             EeeCCCCCChhH
Confidence            999999999874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=4.8e-35  Score=315.49  Aligned_cols=379  Identities=19%  Similarity=0.148  Sum_probs=222.9

Q ss_pred             CccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccc----cCchhhhCCCCCCEEeccccccccccchhHhhcCC-
Q 046382          142 QNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG----SIPSSFADMKMLERLDISDNQLTGEIPERMATGCF-  216 (691)
Q Consensus       142 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-  216 (691)
                      ++|++|++++|++++.....++..+++|++|++++|.++.    .++..+..+++|++|++++|.+++..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4667777777776643333434446777777777777663    23556667777777777777776545555555555 


Q ss_pred             ---CCCEEEcccccCCc----cCcccccCCCCCCEEEccCCcCcccCCccc-----cCCCCCCEEEccCCcCCCcc----
Q 046382          217 ---SLKILALSNNSLQG----HIFSKKFNLTNLMRLQLDGNKFIGEIPESL-----SKCYLLGGLYLSDNHLSGEI----  280 (691)
Q Consensus       217 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~----  280 (691)
                         +|++|++++|.++.    ..+..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               57777777777764    235556677777777777777654333222     22456777777777776533    


Q ss_pred             hhhhhcCCCCCEEecCCCccCCCcchhhc-----CCCCCCEEEccCCcCcccC----CCCC-CCCcccEEEccCCccccc
Q 046382          281 PRWLGNLSALEGIRMPNNNLEGPIPIEFC-----QLSALKILDLSNNSIFGTL----PSCF-SPAHIEQVHLSKNKIEGR  350 (691)
Q Consensus       281 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~----~~~~-~~~~L~~L~l~~n~i~~~  350 (691)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+.+..    +..+ .+++|++|++++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            44555667777777777776544333332     2456777777777665421    1111 356666666666666543


Q ss_pred             c-----ccccCCCCCccEEeccCCCCCCC----cchhhcCCCCccEEecccCcCcccCCcCCC-----CCCCCCEEEccC
Q 046382          351 L-----ESIIHDSPYLVTLDLSYNRLHGS----IPNRIDRLPQLNYLLLAHNYIKGEIPVQLC-----QLKEVRLIDLSH  416 (691)
Q Consensus       351 ~-----~~~~~~~~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~  416 (691)
                      .     +..+..+++|+.|++++|.+++.    ++..+..+++|++|++++|++++..+..+.     ..++|++|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            2     22233466777777777777643    455555667777777777776543322221     225677777777


Q ss_pred             CCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEc
Q 046382          417 NNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDL  496 (691)
Q Consensus       417 n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  496 (691)
                      |.+++.....+...-                                                      ..+++|++|++
T Consensus       323 n~l~~~~~~~l~~~l------------------------------------------------------~~~~~L~~L~L  348 (461)
T 1z7x_W          323 CSFTAACCSHFSSVL------------------------------------------------------AQNRFLLELQI  348 (461)
T ss_dssp             SCCBGGGHHHHHHHH------------------------------------------------------HHCSSCCEEEC
T ss_pred             CCCchHHHHHHHHHH------------------------------------------------------hhCCCccEEEc
Confidence            776543211111100                                                      01456677777


Q ss_pred             CCCeeeeccchhhhc-----ccCCCeEeCCCCcCCc----ccchhhcCCCcCCEEeCCCccccccCCcccc-----cCCC
Q 046382          497 SCNKLTGEIPTQIGY-----LSGIHALNLSHNNLTG----TIPTTFSNLKQIESLDLSYNLLHGKIPPQLI-----VLNT  562 (691)
Q Consensus       497 s~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~  562 (691)
                      ++|.+++..+..+..     .++|++|+|++|.+++    .+|..+..+++|++|++++|++++.....+.     ...+
T Consensus       349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~  428 (461)
T 1z7x_W          349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL  428 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCC
T ss_pred             cCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcc
Confidence            777766544444432     4567777777777764    5566666677777777777776643221111     1234


Q ss_pred             CCeEEccCCccc
Q 046382          563 LEVFKVAYNNLS  574 (691)
Q Consensus       563 L~~L~l~~N~l~  574 (691)
                      |+.|++.++.+.
T Consensus       429 L~~L~~~~~~~~  440 (461)
T 1z7x_W          429 LEQLVLYDIYWS  440 (461)
T ss_dssp             CCEEECTTCCCC
T ss_pred             hhheeecccccC
Confidence            666666655544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=7.4e-35  Score=314.02  Aligned_cols=391  Identities=17%  Similarity=0.137  Sum_probs=227.6

Q ss_pred             CCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccccc----CCcCccCCCccCEEEccCCcCcccCchhhhhCCC--
Q 046382           94 DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS----FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLP--  167 (691)
Q Consensus        94 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~--  167 (691)
                      +|++|+++++++++.....++..+++|++|++++|++.+.    ++..+..+++|++|++++|.+++..+..++..++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            4566666666665433333356666777777777766432    2344566677777777777776544555555455  


Q ss_pred             --CCcEEEccCCcccc----cCchhhhCCCCCCEEeccccccccccchhHhh----cCCCCCEEEcccccCCccC----c
Q 046382          168 --GLMDLNLSRNAFNG----SIPSSFADMKMLERLDISDNQLTGEIPERMAT----GCFSLKILALSNNSLQGHI----F  233 (691)
Q Consensus       168 --~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~----~  233 (691)
                        +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+..    ..++|++|++++|.+++..    +
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              58888888887773    34677778888888888888876443443322    2345666666666665432    2


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCcccc-----CCCCCCEEEccCCcCCCc----chhhhhcCCCCCEEecCCCccCCCc
Q 046382          234 SKKFNLTNLMRLQLDGNKFIGEIPESLS-----KCYLLGGLYLSDNHLSGE----IPRWLGNLSALEGIRMPNNNLEGPI  304 (691)
Q Consensus       234 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~  304 (691)
                      ..+..+++|++|++++|.+....+..+.     ..++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+..
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            2333445555555555555432222221     133455555555544432    2333444444444444444443211


Q ss_pred             chhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccc----cccccCCCCCccEEeccCCCCCCCcchhh
Q 046382          305 PIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGR----LESIIHDSPYLVTLDLSYNRLHGSIPNRI  379 (691)
Q Consensus       305 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  379 (691)
                      ...+.                   +..+ .+++|++|++++|.+++.    .+..+..+++|++|++++|.+++..+..+
T Consensus       244 ~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          244 MAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             HHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             HHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence            11100                   1111 244555555555555543    23445556777777777777764433333


Q ss_pred             c-----CCCCccEEecccCcCccc----CCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCc
Q 046382          380 D-----RLPQLNYLLLAHNYIKGE----IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRA  450 (691)
Q Consensus       380 ~-----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~  450 (691)
                      .     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+...-                   
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-------------------  365 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL-------------------  365 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH-------------------
T ss_pred             HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH-------------------
Confidence            2     235788888888877654    344556678888888888887655444333210                   


Q ss_pred             ccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeee----ccchhhhcccCCCeEeCCCCcCC
Q 046382          451 SVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG----EIPTQIGYLSGIHALNLSHNNLT  526 (691)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~  526 (691)
                                                        ....++|++|++++|.+++    .+|..+..+++|++|++++|+++
T Consensus       366 ----------------------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          366 ----------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             ----------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ----------------------------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence                                              0003578888999998886    67888888999999999999987


Q ss_pred             cccchhhc-----CCCcCCEEeCCCccccccCCcc
Q 046382          527 GTIPTTFS-----NLKQIESLDLSYNLLHGKIPPQ  556 (691)
Q Consensus       527 ~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~  556 (691)
                      +.....+.     ...+|+.|++.++......++.
T Consensus       412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          412 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence            54222222     2346888888888776544443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.1e-30  Score=267.95  Aligned_cols=290  Identities=24%  Similarity=0.281  Sum_probs=170.5

Q ss_pred             CCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEc
Q 046382          192 MLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYL  271 (691)
Q Consensus       192 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  271 (691)
                      +++.++++++.++ .+|..+   .++|+.|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|+.|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4666666666665 555543   245666666666665554555555566666666666555555555555555555555


Q ss_pred             cCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCcccccc
Q 046382          272 SDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRL  351 (691)
Q Consensus       272 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~  351 (691)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..                     .+..
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~  165 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---------------------SGFE  165 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---------------------GGSC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---------------------CCCC
Confidence            555554 2222222  455555555555554444444455555555555544431                     0123


Q ss_pred             ccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhcc
Q 046382          352 ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTA  431 (691)
Q Consensus       352 ~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~  431 (691)
                      +..+..+ +|+.|++++|.+++ +|..+.  ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..  
T Consensus       166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--  239 (332)
T 2ft3_A          166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--  239 (332)
T ss_dssp             TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--
T ss_pred             cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--
Confidence            3344444 56666666666663 333322  56777777777777666666777777777777777776544433322  


Q ss_pred             ccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhc
Q 046382          432 LSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY  511 (691)
Q Consensus       432 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  511 (691)
                                                                              +++|++|++++|+++ .+|..+..
T Consensus       240 --------------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          240 --------------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             --------------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             --------------------------------------------------------CCCCCEEECCCCcCe-ecChhhhc
Confidence                                                                    456777777777777 66666777


Q ss_pred             ccCCCeEeCCCCcCCcccchhhcCC------CcCCEEeCCCcccc--ccCCcccccCCCCCeEEccCCc
Q 046382          512 LSGIHALNLSHNNLTGTIPTTFSNL------KQIESLDLSYNLLH--GKIPPQLIVLNTLEVFKVAYNN  572 (691)
Q Consensus       512 l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~  572 (691)
                      +++|+.|++++|++++..+..|...      .+|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            7777777777777776666666543      56777888888776  5666677777788888877764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.1e-30  Score=264.49  Aligned_cols=151  Identities=21%  Similarity=0.253  Sum_probs=72.7

Q ss_pred             CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEc
Q 046382          168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL  247 (691)
Q Consensus       168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  247 (691)
                      +++.++++++.++ .+|..+.  +++++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4556666655555 3333332  45555666655555 344433445555555555555555544555555555555555


Q ss_pred             cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC--CcchhhcCCCCCCEEEccCCcCc
Q 046382          248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG--PIPIEFCQLSALKILDLSNNSIF  325 (691)
Q Consensus       248 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~i~  325 (691)
                      ++|.++ .+|..+.  ++|+.|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.+.
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            555554 2232221  345555555555444444444444444444444444431  22333444444444444444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.6e-30  Score=266.74  Aligned_cols=245  Identities=25%  Similarity=0.297  Sum_probs=202.6

Q ss_pred             CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEc
Q 046382          168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL  247 (691)
Q Consensus       168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  247 (691)
                      +++.++++++.++ .+|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            7999999999998 5666553  68999999999998 666655688999999999999999888889999999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC--CcchhhcCCCCCCEEEccCCcCc
Q 046382          248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG--PIPIEFCQLSALKILDLSNNSIF  325 (691)
Q Consensus       248 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~i~  325 (691)
                      ++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+ +|++|++++|.+.
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            999998 4555444  799999999999998777889999999999999999863  566777777 8999999999988


Q ss_pred             ccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCC
Q 046382          326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ  405 (691)
Q Consensus       326 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  405 (691)
                      +.....  .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus       186 ~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          186 GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             SCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             ccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence            643333  267888888888888777777888888888888888888766667778888888888888887 56666777


Q ss_pred             CCCCCEEEccCCCCCCCC
Q 046382          406 LKEVRLIDLSHNNLSGHI  423 (691)
Q Consensus       406 l~~L~~L~l~~n~l~~~~  423 (691)
                      +++|++|++++|++++..
T Consensus       263 l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             CTTCCEEECCSSCCCBCC
T ss_pred             CccCCEEECCCCCCCccC
Confidence            888888888888776433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=8.9e-32  Score=272.99  Aligned_cols=252  Identities=31%  Similarity=0.499  Sum_probs=178.6

Q ss_pred             CCCCEEEccCCcCcc--cCCccccCCCCCCEEEccC-CcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCE
Q 046382          240 TNLMRLQLDGNKFIG--EIPESLSKCYLLGGLYLSD-NHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKI  316 (691)
Q Consensus       240 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  316 (691)
                      .+++.|++++|.+.+  .+|..+..+++|+.|++++ |.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            589999999999998  8899999999999999995 9999899999999999999999999999888888999999999


Q ss_pred             EEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCC-CccEEecccCcC
Q 046382          317 LDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLP-QLNYLLLAHNYI  395 (691)
Q Consensus       317 L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~i  395 (691)
                      |++++|.+.+..+.                       .+..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus       130 L~Ls~N~l~~~~p~-----------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          130 LDFSYNALSGTLPP-----------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EECCSSEEESCCCG-----------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             EeCCCCccCCcCCh-----------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            99888887754443                       334444555555555555444455555554 555555555555


Q ss_pred             cccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEE
Q 046382          396 KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFT  475 (691)
Q Consensus       396 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (691)
                      ++..|..+..++ |+.|++++|.+++..|..+..                                              
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~----------------------------------------------  219 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS----------------------------------------------  219 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------------------------------
Confidence            555555555554 555566555555444433221                                              


Q ss_pred             ecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCc
Q 046382          476 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP  555 (691)
Q Consensus       476 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  555 (691)
                                  +++|+.|++++|.+++..|. +..+++|++|+|++|++++.+|..+..+++|+.|+|++|++++.+|.
T Consensus       220 ------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          220 ------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             ------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence                        45566666666666544443 56667777777777777767777777777777777777777777766


Q ss_pred             ccccCCCCCeEEccCCc-ccc
Q 046382          556 QLIVLNTLEVFKVAYNN-LSG  575 (691)
Q Consensus       556 ~l~~l~~L~~L~l~~N~-l~~  575 (691)
                      . ..+++|+.+++++|+ +.|
T Consensus       287 ~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          287 G-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             S-TTGGGSCGGGTCSSSEEES
T ss_pred             C-ccccccChHHhcCCCCccC
Confidence            5 666777777777776 444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.2e-29  Score=260.06  Aligned_cols=247  Identities=23%  Similarity=0.224  Sum_probs=161.2

Q ss_pred             cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382           70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV  149 (691)
Q Consensus        70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  149 (691)
                      +++.++++++.++. +|..+.  +.+++|++++|.+++ ++...++++++|++|++++|++.+..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            77888888777663 344332  568888888888874 44433577888888888888887777777888888888888


Q ss_pred             cCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEecccccccc-ccchhHhhcCCCCCEEEcccccC
Q 046382          150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG-EIPERMATGCFSLKILALSNNSL  228 (691)
Q Consensus       150 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l  228 (691)
                      ++|+++ .+|..++   ++|++|++++|.+++..+..+.++++|++|++++|.+.. .+....+..+++|++|++++|.+
T Consensus       108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            888877 6666554   578888888888776666677778888888888777752 12233345667777777777766


Q ss_pred             CccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhh
Q 046382          229 QGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEF  308 (691)
Q Consensus       229 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  308 (691)
                      +... ..+  .++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. .+|..+
T Consensus       184 ~~l~-~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l  259 (330)
T 1xku_A          184 TTIP-QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  259 (330)
T ss_dssp             CSCC-SSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             ccCC-ccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence            6432 222  256666666666666555555666666666666666665554445555566666666666555 344445


Q ss_pred             cCCCCCCEEEccCCcCcccC
Q 046382          309 CQLSALKILDLSNNSIFGTL  328 (691)
Q Consensus       309 ~~l~~L~~L~L~~n~i~~~~  328 (691)
                      ..+++|++|++++|.+.+..
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCC
T ss_pred             ccCCCcCEEECCCCcCCccC
Confidence            55555555555555555433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.7e-31  Score=297.40  Aligned_cols=394  Identities=13%  Similarity=0.056  Sum_probs=205.8

Q ss_pred             cCCCCCEEEccCCcccccCCcCccC-CC-ccCEEEccCCc-CcccCchhhhhCCCCCcEEEccCCccccc----Cchhhh
Q 046382          116 NNTNLVMLLLANNSLFGSFRMPIHS-HQ-NLATLDVSNNF-FHGHIPVEIGTYLPGLMDLNLSRNAFNGS----IPSSFA  188 (691)
Q Consensus       116 ~l~~L~~L~L~~n~~~~~~~~~l~~-l~-~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~  188 (691)
                      ++++|++|+|++|.+.+..+..+.. ++ +|++|++++|. ++......+...+++|++|++++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            5666666666666554443333333 22 36666666654 22111112222356666666666665543    223344


Q ss_pred             CCCCCCEEecccccccc----ccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCc---ccCCcccc
Q 046382          189 DMKMLERLDISDNQLTG----EIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFI---GEIPESLS  261 (691)
Q Consensus       189 ~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~  261 (691)
                      .+++|++|++++|.+++    .++ .++..+++|+.|++++|.+.+ .+..+..+++|++|+++.....   ...+..+.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            56666666666666541    111 223456666666666666554 3344555666666666543211   12233455


Q ss_pred             CCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcc-hhhcCCCCCCEEEccCCcCccc-CCCCC-CCCccc
Q 046382          262 KCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP-IEFCQLSALKILDLSNNSIFGT-LPSCF-SPAHIE  338 (691)
Q Consensus       262 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~-~~~~~-~~~~L~  338 (691)
                      .+++|+.|+++++.. ..++..+..+++|++|++++|.+.+... ..+..+++|++|++++ .+.+. ++... .+++|+
T Consensus       268 ~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCC
T ss_pred             ccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCC
Confidence            566666666666433 2455556666667777777666543222 2245666667666662 22211 11111 345566


Q ss_pred             EEEccC-----------Cccccc-cccccCCCCCccEEeccCCCCCCCcchhhcC-CCCccEEecc----cCcCccc---
Q 046382          339 QVHLSK-----------NKIEGR-LESIIHDSPYLVTLDLSYNRLHGSIPNRIDR-LPQLNYLLLA----HNYIKGE---  398 (691)
Q Consensus       339 ~L~l~~-----------n~i~~~-~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-l~~L~~L~L~----~n~i~~~---  398 (691)
                      +|++++           +.+++. .......+++|+.|+++.|.+++..+..+.. +++|++|+++    .|.+++.   
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            666662           344332 1122344667777777777766555555544 6677777775    4455432   


Q ss_pred             --CCcCCCCCCCCCEEEccCCC--CCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEE
Q 046382          399 --IPVQLCQLKEVRLIDLSHNN--LSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQF  474 (691)
Q Consensus       399 --~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (691)
                        ++..+..+++|+.|++++|.  +++..+..+.                                              
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~----------------------------------------------  459 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG----------------------------------------------  459 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH----------------------------------------------
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH----------------------------------------------
Confidence              11224456677777776543  3322222111                                              


Q ss_pred             EecCccceeccccccccceEEcCCCeeeec-cchhhhcccCCCeEeCCCCcCCcc-cchhhcCCCcCCEEeCCCcccccc
Q 046382          475 TTKNMSYYYQGRILTSMSGIDLSCNKLTGE-IPTQIGYLSGIHALNLSHNNLTGT-IPTTFSNLKQIESLDLSYNLLHGK  552 (691)
Q Consensus       475 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~  552 (691)
                                 ..+++|++|++++|++++. ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|+++..
T Consensus       460 -----------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          460 -----------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             -----------HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             -----------HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence                       1145677777777776642 334456667777777777776533 333445667777777777776654


Q ss_pred             CCccc-ccCCCCCeEEccC
Q 046382          553 IPPQL-IVLNTLEVFKVAY  570 (691)
Q Consensus       553 ~p~~l-~~l~~L~~L~l~~  570 (691)
                      ....+ ..+|.+....+..
T Consensus       529 ~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          529 GQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             CTTGGGGCCTTEEEEEECC
T ss_pred             HHHHHHHhCCCcEEEEecC
Confidence            33323 2345555544443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=5.8e-31  Score=293.04  Aligned_cols=412  Identities=13%  Similarity=0.056  Sum_probs=294.7

Q ss_pred             CchHHhhcCCCCCEEEccCCccc---ccCCcCc------------cCCCccCEEEccCCcCcccCchhhhhCCCC-CcEE
Q 046382          109 FPNWLLENNTNLVMLLLANNSLF---GSFRMPI------------HSHQNLATLDVSNNFFHGHIPVEIGTYLPG-LMDL  172 (691)
Q Consensus       109 ~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~l------------~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~-L~~L  172 (691)
                      .|..++..+++|++|+++++...   +..|..+            ..+++|++|++++|.+++..+..+...+++ |++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            44555677778888888775421   1222222            268999999999999886666666553445 9999


Q ss_pred             EccCCc-ccc-cCchhhhCCCCCCEEeccccccccccc---hhHhhcCCCCCEEEcccccCCcc----CcccccCCCCCC
Q 046382          173 NLSRNA-FNG-SIPSSFADMKMLERLDISDNQLTGEIP---ERMATGCFSLKILALSNNSLQGH----IFSKKFNLTNLM  243 (691)
Q Consensus       173 ~L~~n~-i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~  243 (691)
                      ++++|. ++. .++.....+++|++|++++|.+++...   ..+...+++|++|++++|.+++.    .+..+..+++|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            999987 221 123334578999999999999874422   23456799999999999998732    333445789999


Q ss_pred             EEEccCCcCcccCCccccCCCCCCEEEccCCcCC---CcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEcc
Q 046382          244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS---GEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLS  320 (691)
Q Consensus       244 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  320 (691)
                      +|++++|.+.+ ++..+..+++|+.|+++.....   ...+..+..+++|+.|+++++... ..+..+..+++|++|+++
T Consensus       224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls  301 (592)
T 3ogk_B          224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLL  301 (592)
T ss_dssp             EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEET
T ss_pred             EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecC
Confidence            99999998875 5677888999999999864332   233345677889999999886443 567778888999999999


Q ss_pred             CCcCcccCCC--CCCCCcccEEEccCCccccccccccCCCCCccEEeccC-----------CCCCCCc-chhhcCCCCcc
Q 046382          321 NNSIFGTLPS--CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSY-----------NRLHGSI-PNRIDRLPQLN  386 (691)
Q Consensus       321 ~n~i~~~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~-----------n~i~~~~-~~~~~~l~~L~  386 (691)
                      +|.+.+....  ...+++|++|+++++...+..+.....+++|++|++++           +.+++.. +.....+++|+
T Consensus       302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  381 (592)
T 3ogk_B          302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE  381 (592)
T ss_dssp             TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred             CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence            9987543322  23689999999994332333344456788999999993           5666432 23345689999


Q ss_pred             EEecccCcCcccCCcCCCC-CCCCCEEEcc----CCCCCCCCCh-hhhhccccCCCCcccCCCcccccCcccccccccCC
Q 046382          387 YLLLAHNYIKGEIPVQLCQ-LKEVRLIDLS----HNNLSGHIPS-CLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS  460 (691)
Q Consensus       387 ~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (691)
                      +|+++.|++++..+..+.. +++|+.|+++    .|.+++.... .+...                              
T Consensus       382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~------------------------------  431 (592)
T 3ogk_B          382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL------------------------------  431 (592)
T ss_dssp             EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH------------------------------
T ss_pred             EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH------------------------------
Confidence            9999999998766655554 8899999997    5566532111 01100                              


Q ss_pred             CCCCCCCCcccEEEEecCccceeccccccccceEEcCCCe--eeeccchhhhc-ccCCCeEeCCCCcCCc-ccchhhcCC
Q 046382          461 RSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK--LTGEIPTQIGY-LSGIHALNLSHNNLTG-TIPTTFSNL  536 (691)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l  536 (691)
                                            +  ..+++|++|++++|.  +++..+..+.. +++|+.|+|++|++++ ..+..+..+
T Consensus       432 ----------------------~--~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  487 (592)
T 3ogk_B          432 ----------------------L--IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC  487 (592)
T ss_dssp             ----------------------H--HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC
T ss_pred             ----------------------H--HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC
Confidence                                  0  116789999998654  66665555544 8999999999999986 345667889


Q ss_pred             CcCCEEeCCCcccccc-CCcccccCCCCCeEEccCCccccc
Q 046382          537 KQIESLDLSYNLLHGK-IPPQLIVLNTLEVFKVAYNNLSGK  576 (691)
Q Consensus       537 ~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~  576 (691)
                      ++|+.|+|++|.+++. ++.....+++|+.|++++|+++..
T Consensus       488 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             cccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            9999999999998755 344456789999999999998754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3.8e-28  Score=259.11  Aligned_cols=250  Identities=23%  Similarity=0.270  Sum_probs=166.5

Q ss_pred             CEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCC
Q 046382          291 EGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN  369 (691)
Q Consensus       291 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n  369 (691)
                      ..++.++..++ .+|..+.  ++++.|++++|.+.+..+..+ .+++|++|++++|.++++.+..+..+++|+.|++++|
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            34444444444 2333322  356666666666665554444 5566666666666666666666777777777777777


Q ss_pred             CCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCCh-hhhhccccCCCCcccCCCccccc
Q 046382          370 RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS-CLVNTALSGGHHEAVAPTSIWCG  448 (691)
Q Consensus       370 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~l~~~~~~~~~~~~~~~~  448 (691)
                      +++...+..+..+++|++|++++|++++..+..|..+++|++|++++|+..+.++. .+..                   
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-------------------  183 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-------------------  183 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-------------------
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-------------------
Confidence            77755555677777777777777777766666677777777777777544333322 1111                   


Q ss_pred             CcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcc
Q 046382          449 RASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGT  528 (691)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  528 (691)
                                                             +++|++|+|++|.++ .+| .+..+++|++|+|++|++++.
T Consensus       184 ---------------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          184 ---------------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             ---------------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             ---------------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence                                                   567777777777776 444 366777788888888877777


Q ss_pred             cchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCC
Q 046382          529 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLS  603 (691)
Q Consensus       529 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~  603 (691)
                      .|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+. ...+..++.+++++|||.|+|.+.
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL  298 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence            777777778888888888888777777777777888888888887766555 345667777788888888888654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=9.5e-28  Score=257.00  Aligned_cols=249  Identities=21%  Similarity=0.209  Sum_probs=123.1

Q ss_pred             CEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCC
Q 046382          267 GGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKN  345 (691)
Q Consensus       267 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n  345 (691)
                      ..++.++..++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            44555555554 2333222  355555555555555445555555555555555555554443333 3445555555555


Q ss_pred             ccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC-cCcccCCcCCCCCCCCCEEEccCCCCCCCCC
Q 046382          346 KIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN-YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP  424 (691)
Q Consensus       346 ~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  424 (691)
                      .++...+..+..+++|+.|++++|+++...+..+..+++|++|++++| .+....+..|..+++|               
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L---------------  198 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL---------------  198 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC---------------
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC---------------
Confidence            554444444444555555555555544333334444445555555442 2222222334444444               


Q ss_pred             hhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeec
Q 046382          425 SCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE  504 (691)
Q Consensus       425 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  504 (691)
                                                                                         ++|+|++|.+++ 
T Consensus       199 -------------------------------------------------------------------~~L~L~~n~l~~-  210 (452)
T 3zyi_A          199 -------------------------------------------------------------------KYLNLGMCNIKD-  210 (452)
T ss_dssp             -------------------------------------------------------------------CEEECTTSCCSS-
T ss_pred             -------------------------------------------------------------------CEEECCCCcccc-
Confidence                                                                               445555554442 


Q ss_pred             cchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCC
Q 046382          505 IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQF  583 (691)
Q Consensus       505 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~  583 (691)
                      +| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+. ...+
T Consensus       211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence            22 244455555555555555554455555555555555555555555555555555555555555555544333 2334


Q ss_pred             CCcCcCcccCCCCCCCCCC
Q 046382          584 STFEEDSYEGNPFLCGKPL  602 (691)
Q Consensus       584 ~~~~~~~~~~Np~~c~~~l  602 (691)
                      ..++.+++++|||.|+|.+
T Consensus       290 ~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          290 RYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             TTCCEEECCSSCEECSTTT
T ss_pred             cCCCEEEccCCCcCCCCCc
Confidence            4455555566666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.5e-28  Score=250.79  Aligned_cols=202  Identities=21%  Similarity=0.159  Sum_probs=112.1

Q ss_pred             CCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 046382          191 KMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLY  270 (691)
Q Consensus       191 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  270 (691)
                      +.....+.+++.++ .+|..+   .++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus        31 ~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           31 DRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            33444566666666 666544   24666677776666665555666677777777777776666566666667777777


Q ss_pred             ccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcc-hhhcCCCCCCEEEccCCc-CcccCCCCC-CCCcccEEEccCCcc
Q 046382          271 LSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP-IEFCQLSALKILDLSNNS-IFGTLPSCF-SPAHIEQVHLSKNKI  347 (691)
Q Consensus       271 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~~~L~~L~l~~n~i  347 (691)
                      +++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+..+..+ .+++|++|++++|.+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            77777765555556666677777777776664333 345566666666666663 333333222 344455555555544


Q ss_pred             ccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCc
Q 046382          348 EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK  396 (691)
Q Consensus       348 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~  396 (691)
                      ++..+..+..+++|++|++++|.+.......+..+++|++|++++|+++
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence            4444444444444444444444443221122223444444444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=254.38  Aligned_cols=277  Identities=17%  Similarity=0.136  Sum_probs=167.6

Q ss_pred             CCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEE
Q 046382          239 LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILD  318 (691)
Q Consensus       239 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  318 (691)
                      ++.....+.+++.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            344455677777766 4454433  4677777777777755555677777777777777777766666677777777777


Q ss_pred             ccCCcCcccCCCCC-CCCcccEEEccCCccccccc-cccCCCCCccEEeccCC-CCCCCcchhhcCCCCccEEecccCcC
Q 046382          319 LSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLE-SIIHDSPYLVTLDLSYN-RLHGSIPNRIDRLPQLNYLLLAHNYI  395 (691)
Q Consensus       319 L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~i  395 (691)
                      +++|.+.+..+..+ .+++|++|++++|.+++... ..+..+++|+.|++++| .+....+..+..+++|++|++++|++
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            77777765444322 56677777777777665544 45666677777777776 35544455666667777777777777


Q ss_pred             cccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEE
Q 046382          396 KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFT  475 (691)
Q Consensus       396 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (691)
                      ++..|..+..+++|++|++++|.+. .+|..+..                                              
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~----------------------------------------------  219 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD----------------------------------------------  219 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCST-THHHHHHH----------------------------------------------
T ss_pred             CccCHHHHhccccCCeecCCCCccc-cchhhhhh----------------------------------------------
Confidence            6666666666677777777776664 22222111                                              


Q ss_pred             ecCccceeccccccccceEEcCCCeeeeccchhh---hcccCCCeEeCCCCcCCc----ccchhhcCCCcCCEEeCCCcc
Q 046382          476 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI---GYLSGIHALNLSHNNLTG----TIPTTFSNLKQIESLDLSYNL  548 (691)
Q Consensus       476 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~  548 (691)
                                 .+++|++|++++|.+++..+..+   ...+.++.++|+++.+.+    .+|..+..+++|++|++++|+
T Consensus       220 -----------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          220 -----------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             -----------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             -----------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence                       14566666666666664433322   224455556666665543    245556666666666666666


Q ss_pred             ccccCCcccccCCCCCeEEccCCccccc
Q 046382          549 LHGKIPPQLIVLNTLEVFKVAYNNLSGK  576 (691)
Q Consensus       549 l~~~~p~~l~~l~~L~~L~l~~N~l~~~  576 (691)
                      ++...+..|..+++|+.|++++|++.+.
T Consensus       289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          289 LKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            6633222345566666666666655543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=5.6e-28  Score=244.92  Aligned_cols=252  Identities=21%  Similarity=0.258  Sum_probs=134.6

Q ss_pred             EEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCcc
Q 046382          268 GLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKI  347 (691)
Q Consensus       268 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i  347 (691)
                      .++.+++.++ .+|..+  .+++++|++++|.+....+..|..+++|++|++++|.+....                   
T Consensus        11 ~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-------------------   68 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG-------------------   68 (306)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE-------------------
T ss_pred             EEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc-------------------
Confidence            4555555554 223222  135555555555555333333455555555555555543221                   


Q ss_pred             ccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChh
Q 046382          348 EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSC  426 (691)
Q Consensus       348 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~  426 (691)
                        ..+..+..+++|+.|++++|.+. .++..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..
T Consensus        69 --~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  145 (306)
T 2z66_A           69 --CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI  145 (306)
T ss_dssp             --EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred             --CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence              11223334555555555555555 344445555566666666665554333 34555566666666666555433332


Q ss_pred             hhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeee-cc
Q 046382          427 LVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EI  505 (691)
Q Consensus       427 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~  505 (691)
                      +..                                                          +++|++|++++|.+++ ..
T Consensus       146 ~~~----------------------------------------------------------l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A          146 FNG----------------------------------------------------------LSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             TTT----------------------------------------------------------CTTCCEEECTTCEEGGGEE
T ss_pred             ccc----------------------------------------------------------CcCCCEEECCCCccccccc
Confidence            221                                                          3456666666666654 35


Q ss_pred             chhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC-CCCC-
Q 046382          506 PTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQF-  583 (691)
Q Consensus       506 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~-  583 (691)
                      |..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|. ...+ 
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  247 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP  247 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence            55566666666666666666655556666666666666666666655555566666666666666666665554 2223 


Q ss_pred             CCcCcCcccCCCCCCCCCC
Q 046382          584 STFEEDSYEGNPFLCGKPL  602 (691)
Q Consensus       584 ~~~~~~~~~~Np~~c~~~l  602 (691)
                      ..++.+++++||+.|+|+.
T Consensus       248 ~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          248 SSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             TTCCEEECTTCCEECSGGG
T ss_pred             ccCCEEEccCCCeecccCh
Confidence            3556666666666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=4e-30  Score=286.40  Aligned_cols=398  Identities=17%  Similarity=0.121  Sum_probs=207.1

Q ss_pred             hcCCCCCEEEccCCcccccCCcCcc-CCCccCEEEccCC-cCcccCchhhhhCCCCCcEEEccCCcccccCchhhh----
Q 046382          115 ENNTNLVMLLLANNSLFGSFRMPIH-SHQNLATLDVSNN-FFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA----  188 (691)
Q Consensus       115 ~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----  188 (691)
                      ..+++|++|++++|.+.+..+..+. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+..+.    
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            4556666666666655444333333 4566666666666 343222223333356666666666665543333332    


Q ss_pred             CCCCCCEEeccccc--cccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCc-------CcccCCcc
Q 046382          189 DMKMLERLDISDNQ--LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNK-------FIGEIPES  259 (691)
Q Consensus       189 ~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~  259 (691)
                      .+++|++|++++|.  +.......+...+++|++|++++|...+..+..+..+++|+.|++..+.       +.+ ++..
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence            44566666666664  2211122223345666666666652111233444455666666654432       111 1224


Q ss_pred             ccCCCCCCEE-EccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcch-hhcCCCCCCEEEccCCcCccc-CCCCC-CCC
Q 046382          260 LSKCYLLGGL-YLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPI-EFCQLSALKILDLSNNSIFGT-LPSCF-SPA  335 (691)
Q Consensus       260 ~~~l~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~-~~~~~-~~~  335 (691)
                      +..+++|+.| .+.+... +.++..+..+++|++|++++|.+.+.... .+..+++|++|++++| +.+. .+... .++
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            5556666666 2332221 23334444556666666666664422111 2345666666666665 2211 11111 245


Q ss_pred             cccEEEccC---------Ccccccccccc-CCCCCccEEeccCCCCCCCcchhhc-CCCCccEEecc--c----CcCccc
Q 046382          336 HIEQVHLSK---------NKIEGRLESII-HDSPYLVTLDLSYNRLHGSIPNRID-RLPQLNYLLLA--H----NYIKGE  398 (691)
Q Consensus       336 ~L~~L~l~~---------n~i~~~~~~~~-~~~~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~L~--~----n~i~~~  398 (691)
                      +|++|++.+         +.+++.....+ ..+++|+.|+++.|.+++.....+. .+++|+.|+++  +    +.+++.
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            666666622         33433222222 2367777777777777654444443 46777777777  3    344421


Q ss_pred             C-----CcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEE
Q 046382          399 I-----PVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQ  473 (691)
Q Consensus       399 ~-----~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (691)
                      .     +..+..+++|+.|++++ .+++..+..+..                                            
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~--------------------------------------------  453 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT--------------------------------------------  453 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH--------------------------------------------
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH--------------------------------------------
Confidence            1     11244566777777765 444322222211                                            


Q ss_pred             EEecCccceeccccccccceEEcCCCeeeeccchhh-hcccCCCeEeCCCCcCCcccch-hhcCCCcCCEEeCCCccccc
Q 046382          474 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHG  551 (691)
Q Consensus       474 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~  551 (691)
                                   .+++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++.
T Consensus       454 -------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          454 -------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             -------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             -------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence                         14667777887777765544444 5677788888888877543333 34457778888888877754


Q ss_pred             cCCccc-ccCCCCCeEEccCCcc
Q 046382          552 KIPPQL-IVLNTLEVFKVAYNNL  573 (691)
Q Consensus       552 ~~p~~l-~~l~~L~~L~l~~N~l  573 (691)
                      .....+ ..++.|+...+..+.-
T Consensus       521 ~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          521 GACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             HHHHHHHHHCTTEEEEEECSSSC
T ss_pred             HHHHHHHHhCCCCEEEEecCCCc
Confidence            433334 4566666666655543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.8e-27  Score=238.84  Aligned_cols=247  Identities=20%  Similarity=0.238  Sum_probs=154.0

Q ss_pred             CEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccc--cchhHhhcCCCCCEEE
Q 046382          145 ATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGE--IPERMATGCFSLKILA  222 (691)
Q Consensus       145 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~  222 (691)
                      +.++.+++.++ .+|..+.   ++|++|++++|.++...+..|.++++|++|++++|.++..  .+..+ .++++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEE
Confidence            56777777777 7776543   5788888888887755555577788888888888877621  13333 3466777777


Q ss_pred             cccccCCccCcccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccC
Q 046382          223 LSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP-ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE  301 (691)
Q Consensus       223 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  301 (691)
                      +++|.+.. .+..+..+++|++|++++|++.+..+ ..+.                        .+++|++|++++|.+.
T Consensus        85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------~l~~L~~L~l~~n~l~  139 (306)
T 2z66_A           85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL------------------------SLRNLIYLDISHTHTR  139 (306)
T ss_dssp             CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTT------------------------TCTTCCEEECTTSCCE
T ss_pred             CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhh------------------------hccCCCEEECCCCcCC
Confidence            77766653 23345556666666666665543322 2334                        4444444444444444


Q ss_pred             CCcchhhcCCCCCCEEEccCCcCcc-cCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhh
Q 046382          302 GPIPIEFCQLSALKILDLSNNSIFG-TLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRI  379 (691)
Q Consensus       302 ~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~  379 (691)
                      +..+..+..+++|++|++++|.+.+ ..+..+ .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+
T Consensus       140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence            4444445555555555555555543 223222 45566666666666666656666777777777777777776655567


Q ss_pred             cCCCCccEEecccCcCcccCCcCCCCCC-CCCEEEccCCCCCC
Q 046382          380 DRLPQLNYLLLAHNYIKGEIPVQLCQLK-EVRLIDLSHNNLSG  421 (691)
Q Consensus       380 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~  421 (691)
                      ..+++|++|++++|++++..+..+..++ +|+.|++++|++.+
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            7777777777777777777777777763 77777777777764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1e-26  Score=233.01  Aligned_cols=222  Identities=22%  Similarity=0.206  Sum_probs=122.5

Q ss_pred             EEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCC
Q 046382          195 RLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN  274 (691)
Q Consensus       195 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  274 (691)
                      +++.+++.++ .+|..+   .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus        15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            4444444444 444322   234555555555555444444555555555555555555444555555555555555555


Q ss_pred             c-CCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccc
Q 046382          275 H-LSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLE  352 (691)
Q Consensus       275 ~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~  352 (691)
                      . +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            4 444444555555556666666555555545555555566666666665554443333 44555555555555555555


Q ss_pred             cccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382          353 SIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS  420 (691)
Q Consensus       353 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  420 (691)
                      ..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            55556666666666666666555556666666666666666666544445666666666666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.9e-27  Score=235.99  Aligned_cols=204  Identities=21%  Similarity=0.203  Sum_probs=96.6

Q ss_pred             CCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCC-CCCCcchhhcCCCCccEEec
Q 046382          313 ALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNR-LHGSIPNRIDRLPQLNYLLL  390 (691)
Q Consensus       313 ~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~L  390 (691)
                      ++++|++++|.+.+..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            44444444444443333222 33444444444444444444444445555555555554 44333444445555555555


Q ss_pred             ccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcc
Q 046382          391 AHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEE  470 (691)
Q Consensus       391 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (691)
                      ++|++++..+..+..+++|++|++++|.+++..+..+..                                         
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------------------  151 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----------------------------------------  151 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----------------------------------------
Confidence            555555444444555555555555555544222221111                                         


Q ss_pred             cEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382          471 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  550 (691)
Q Consensus       471 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (691)
                                       +++|++|++++|++++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.++
T Consensus       152 -----------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          152 -----------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             -----------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             -----------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence                             344555555555555433444555555555555555555444555555555555555555555


Q ss_pred             ccCCcccccCCCCCeEEccCCccc
Q 046382          551 GKIPPQLIVLNTLEVFKVAYNNLS  574 (691)
Q Consensus       551 ~~~p~~l~~l~~L~~L~l~~N~l~  574 (691)
                      +..+..+..+++|+.|++++|++.
T Consensus       215 ~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          215 ALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCCHHHcccCcccCEEeccCCCcc
Confidence            444444555555555555555444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.8e-26  Score=247.16  Aligned_cols=247  Identities=22%  Similarity=0.257  Sum_probs=199.9

Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEcc
Q 046382          241 NLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLS  320 (691)
Q Consensus       241 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  320 (691)
                      ....++.++..++ .+|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            4567888888877 5665543  689999999999998888999999999999999999998888899999999999999


Q ss_pred             CCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCC-CCCCCcchhhcCCCCccEEecccCcCccc
Q 046382          321 NNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN-RLHGSIPNRIDRLPQLNYLLLAHNYIKGE  398 (691)
Q Consensus       321 ~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~i~~~  398 (691)
                      +|.+.+..+..+ .+++|++|++++|.++...+..+..+++|+.|++++| .+....+..+..+++|++|++++|++++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            999998777766 6899999999999999988889999999999999995 55544445688999999999999999854


Q ss_pred             CCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecC
Q 046382          399 IPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKN  478 (691)
Q Consensus       399 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (691)
                       | .+..+++|+.|++++|++++..|..+..                                                 
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------  240 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHG-------------------------------------------------  240 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTT-------------------------------------------------
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccC-------------------------------------------------
Confidence             3 4677788888888888877555544432                                                 


Q ss_pred             ccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382          479 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  550 (691)
Q Consensus       479 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (691)
                               +++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus       241 ---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          241 ---------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ---------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ---------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence                     456777777777777666777777777777777777777666666677777777777777665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=3.4e-29  Score=278.89  Aligned_cols=396  Identities=14%  Similarity=0.095  Sum_probs=199.7

Q ss_pred             cccEEEecCCCCCCCcchhhc-CCCCCCEEEccCC-CCcccCchHHhhcCCCCCEEEccCCcccccCCcCc----cCCCc
Q 046382           70 QLTSISLSGYIDGGTFPKFLY-HQHDLKNADLSHL-NLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPI----HSHQN  143 (691)
Q Consensus        70 ~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l----~~l~~  143 (691)
                      +|++|++++|.+++..+..+. .+++|++|++++| .+++.....+..++++|++|++++|.+.+..+..+    ..+++
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~  185 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS  185 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence            566666666666555444443 4666666666666 33322222333456666666666666544332222    24556


Q ss_pred             cCEEEccCCc--CcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEecccc-------ccccccchhHhhc
Q 046382          144 LATLDVSNNF--FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDN-------QLTGEIPERMATG  214 (691)
Q Consensus       144 L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~~  214 (691)
                      |++|++++|.  ++......+...+++|++|++++|...+.++..+..+++|++|+++.+       .+. .++..+ .+
T Consensus       186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l-~~  263 (594)
T 2p1m_B          186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL-SG  263 (594)
T ss_dssp             CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH-HT
T ss_pred             CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH-hc
Confidence            6666666664  221111122222456666666665222224555556666666664333       222 222222 44


Q ss_pred             CCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcch-hhhhcCCCCCEE
Q 046382          215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIP-RWLGNLSALEGI  293 (691)
Q Consensus       215 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L  293 (691)
                      +++|+.|.                       .+.+... ..++..+..+++|+.|++++|.+++... ..+..+++|++|
T Consensus       264 ~~~L~~Ls-----------------------~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L  319 (594)
T 2p1m_B          264 CKELRCLS-----------------------GFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL  319 (594)
T ss_dssp             CTTCCEEE-----------------------CCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEE
T ss_pred             CCCccccc-----------------------CCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEE
Confidence            55555552                       1211111 1122222234444444444444332211 113344555555


Q ss_pred             ecCCCccCCC-cchhhcCCCCCCEEEccC---------CcCcccCCCCC--CCCcccEEEccCCccccccccccC-CCCC
Q 046382          294 RMPNNNLEGP-IPIEFCQLSALKILDLSN---------NSIFGTLPSCF--SPAHIEQVHLSKNKIEGRLESIIH-DSPY  360 (691)
Q Consensus       294 ~l~~n~~~~~-~~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~~-~~~~  360 (691)
                      ++++| +... .+.....+++|++|++++         +.+++.....+  .+++|++|.+..+.+++.....+. .+++
T Consensus       320 ~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~  398 (594)
T 2p1m_B          320 WVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN  398 (594)
T ss_dssp             EEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTT
T ss_pred             eCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCC
Confidence            55544 2111 111112344555555522         22221110000  245666666666666544333333 4677


Q ss_pred             ccEEecc--C----CCCCCC-----cchhhcCCCCccEEecccCcCcccCCcCCCC-CCCCCEEEccCCCCCCCCChhhh
Q 046382          361 LVTLDLS--Y----NRLHGS-----IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNLSGHIPSCLV  428 (691)
Q Consensus       361 L~~L~ls--~----n~i~~~-----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~~p~~~~  428 (691)
                      |+.|+++  +    +.+++.     ++..+..+++|++|++++ .+++.....+.. +++|+.|++++|.+++..+..+.
T Consensus       399 L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~  477 (594)
T 2p1m_B          399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL  477 (594)
T ss_dssp             CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH
T ss_pred             cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH
Confidence            7777777  3    444421     122356677888888876 555444444443 77888888888887643332221


Q ss_pred             hccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccch-
Q 046382          429 NTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT-  507 (691)
Q Consensus       429 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-  507 (691)
                      .                                                         .+++|++|+|++|.+++.... 
T Consensus       478 ~---------------------------------------------------------~~~~L~~L~L~~n~~~~~~~~~  500 (594)
T 2p1m_B          478 S---------------------------------------------------------GCDSLRKLEIRDCPFGDKALLA  500 (594)
T ss_dssp             H---------------------------------------------------------HCTTCCEEEEESCSCCHHHHHH
T ss_pred             h---------------------------------------------------------cCCCcCEEECcCCCCcHHHHHH
Confidence            1                                                         157788888888888644433 


Q ss_pred             hhhcccCCCeEeCCCCcCCcccchhh-cCCCcCCEEeCCCcccc
Q 046382          508 QIGYLSGIHALNLSHNNLTGTIPTTF-SNLKQIESLDLSYNLLH  550 (691)
Q Consensus       508 ~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~  550 (691)
                      ....+++|+.|++++|+++......+ ..+++|+...+..+.-.
T Consensus       501 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             TGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             HHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            34558889999999998854333334 45677777666665443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.4e-28  Score=248.55  Aligned_cols=264  Identities=21%  Similarity=0.206  Sum_probs=183.7

Q ss_pred             EEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCc
Q 046382          244 RLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNS  323 (691)
Q Consensus       244 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  323 (691)
                      ..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+  +..+++|++|++++|.
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            34445555443333444555677777777777776666777777777777777777765443  6777777777777777


Q ss_pred             CcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCC
Q 046382          324 IFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQL  403 (691)
Q Consensus       324 i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  403 (691)
                      +.+..+    .++|++|++++|.+++..+.   .+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+
T Consensus        92 l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  164 (317)
T 3o53_A           92 VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL  164 (317)
T ss_dssp             EEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred             cccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence            764432    36777788887777766543   35678888888888886666677777888888888888876666555


Q ss_pred             -CCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccce
Q 046382          404 -CQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYY  482 (691)
Q Consensus       404 -~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (691)
                       ..+++|++|++++|.+++. |..                                                        
T Consensus       165 ~~~l~~L~~L~L~~N~l~~~-~~~--------------------------------------------------------  187 (317)
T 3o53_A          165 AASSDTLEHLNLQYNFIYDV-KGQ--------------------------------------------------------  187 (317)
T ss_dssp             GGGTTTCCEEECTTSCCCEE-ECC--------------------------------------------------------
T ss_pred             hhccCcCCEEECCCCcCccc-ccc--------------------------------------------------------
Confidence             3677888888888877632 110                                                        


Q ss_pred             eccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc-ccCCcccccCC
Q 046382          483 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPPQLIVLN  561 (691)
Q Consensus       483 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~  561 (691)
                         ..+++|++|++++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++
T Consensus       188 ---~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          188 ---VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             ---CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             ---cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence               015678888888888874 4445778888888888888887 46777888888888888888887 66777777788


Q ss_pred             CCCeEEccCC-cccccCC
Q 046382          562 TLEVFKVAYN-NLSGKIP  578 (691)
Q Consensus       562 ~L~~L~l~~N-~l~~~~p  578 (691)
                      +|+.+++++| .+.|..|
T Consensus       263 ~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          263 RVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             HHHHHHHHHHHHHHSSSS
T ss_pred             cceEEECCCchhccCCch
Confidence            8888887744 4554433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=9.8e-26  Score=240.46  Aligned_cols=249  Identities=22%  Similarity=0.191  Sum_probs=179.8

Q ss_pred             ccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEE
Q 046382          143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILA  222 (691)
Q Consensus       143 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  222 (691)
                      ..+.++.++..++ .+|..+.   ++++.|+|++|.++...+..|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            4567888888888 8887664   58889999999998877788888999999999999888 66666667788888888


Q ss_pred             cccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC
Q 046382          223 LSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG  302 (691)
Q Consensus       223 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  302 (691)
                      +++|+++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|...+.+                      
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i----------------------  176 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI----------------------  176 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE----------------------
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee----------------------
Confidence            8888887666666777777777777777776655556666666666666663322222                      


Q ss_pred             CcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCC
Q 046382          303 PIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRL  382 (691)
Q Consensus       303 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l  382 (691)
                       .+..|..+++|++|++++|.+. .++....+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+
T Consensus       177 -~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          177 -SEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             -CTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred             -CcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence             2223444455555555555544 22333456667777777777777767777778888888888888877777777788


Q ss_pred             CCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382          383 PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS  420 (691)
Q Consensus       383 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  420 (691)
                      ++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus       255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            88888888888888777777778888888888888775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=5.6e-26  Score=231.64  Aligned_cols=226  Identities=20%  Similarity=0.246  Sum_probs=166.7

Q ss_pred             CCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcE
Q 046382           92 QHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMD  171 (691)
Q Consensus        92 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~  171 (691)
                      .+++++|++++|.++ .+|..+ .++++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.. +++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCE
T ss_pred             ccceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCE
Confidence            356677777777766 566554 45677777777777765 55666667777777777777776 66666554 667777


Q ss_pred             EEccCCcccccCchhhhC---------CCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCC
Q 046382          172 LNLSRNAFNGSIPSSFAD---------MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNL  242 (691)
Q Consensus       172 L~L~~n~i~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  242 (691)
                      |++++|.+.+.+|..+..         +++|++|++++|.++ .+|..+ ..+++|++|++++|.+++ .+..+..+++|
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L  231 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSA-LGPAIHHLPKL  231 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence            777776666666655543         788888888888887 777664 567888888888888875 34457778888


Q ss_pred             CEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCC
Q 046382          243 MRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNN  322 (691)
Q Consensus       243 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  322 (691)
                      ++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            88888888887778888888888888888888887788888888888888888888888888888888888888888776


Q ss_pred             cCc
Q 046382          323 SIF  325 (691)
Q Consensus       323 ~i~  325 (691)
                      .+.
T Consensus       312 ~~~  314 (328)
T 4fcg_A          312 LQA  314 (328)
T ss_dssp             GSC
T ss_pred             HHH
Confidence            554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1e-25  Score=229.78  Aligned_cols=225  Identities=20%  Similarity=0.213  Sum_probs=146.5

Q ss_pred             cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382           70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV  149 (691)
Q Consensus        70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  149 (691)
                      ++++|+++++.+. .+|..+.++++|++|++++|.++ .+|..+ +++++|++|++++|.+. .+|..+..+++|++|++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            6666777766665 45555666666777777776666 566543 66667777777776665 44556666667777777


Q ss_pred             cCCcCcccCchhhhh--------CCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEE
Q 046382          150 SNNFFHGHIPVEIGT--------YLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKIL  221 (691)
Q Consensus       150 s~n~i~~~~~~~~~~--------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  221 (691)
                      ++|.+.+.+|..+..        .+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ ..+++|++|
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l-~~l~~L~~L  234 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI-HHLPKLEEL  234 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG-GGCTTCCEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh-ccCCCCCEE
Confidence            766655566655431        2566677777776666 55666666667777777777666 455543 456667777


Q ss_pred             EcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccC
Q 046382          222 ALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE  301 (691)
Q Consensus       222 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  301 (691)
                      ++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            77776666666666666667777777766666666666666667777777776666666666666777766666655443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.4e-26  Score=248.98  Aligned_cols=244  Identities=20%  Similarity=0.214  Sum_probs=151.6

Q ss_pred             CCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccC
Q 046382          289 ALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSY  368 (691)
Q Consensus       289 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~  368 (691)
                      +|+.|++++|.+.+..|..|..+++|++|++++|.+.+..+ ...+++|++|++++|.+++..+     .++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence            56666666666665555566666666666666666655443 3355666666666666654432     25677777777


Q ss_pred             CCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCccccc
Q 046382          369 NRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCG  448 (691)
Q Consensus       369 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~  448 (691)
                      |.+++..+.   .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..                   
T Consensus       109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-------------------  166 (487)
T 3oja_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-------------------  166 (487)
T ss_dssp             SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-------------------
T ss_pred             CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-------------------
Confidence            776654332   3466777777777777666666666777777777777776555443321                   


Q ss_pred             CcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcc
Q 046382          449 RASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGT  528 (691)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  528 (691)
                                                            .+++|+.|+|++|.+++..+  ...+++|+.|+|++|.+++.
T Consensus       167 --------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          167 --------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             --------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred             --------------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC
Confidence                                                  14567777777777765422  23467777777777777754


Q ss_pred             cchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccc-ccCCC-CCCCCCcCcCccc-------CCCCCCC
Q 046382          529 IPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS-GKIPD-RAQFSTFEEDSYE-------GNPFLCG  599 (691)
Q Consensus       529 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~p~-~~~~~~~~~~~~~-------~Np~~c~  599 (691)
                      + ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|. ...+..+..+.+.       +||+.|+
T Consensus       207 ~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~  284 (487)
T 3oja_A          207 G-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT  284 (487)
T ss_dssp             C-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCS
T ss_pred             C-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCccccc
Confidence            3 346777777777777777774 5556777777777777777776 33222 2223333333443       7888887


Q ss_pred             CCC
Q 046382          600 KPL  602 (691)
Q Consensus       600 ~~l  602 (691)
                      |+.
T Consensus       285 ~~~  287 (487)
T 3oja_A          285 VPT  287 (487)
T ss_dssp             STT
T ss_pred             CCc
Confidence            753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.8e-27  Score=242.02  Aligned_cols=255  Identities=18%  Similarity=0.163  Sum_probs=124.3

Q ss_pred             EEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEccc
Q 046382          146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN  225 (691)
Q Consensus       146 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  225 (691)
                      ..+++.+.+. ..+..++..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+   +..+++|++|++++
T Consensus        14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNN   89 (317)
T ss_dssp             EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCS
T ss_pred             Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcC
Confidence            3344444443 3333333334455555555555554444455555555555555555542222   34455555555555


Q ss_pred             ccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcc
Q 046382          226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIP  305 (691)
Q Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  305 (691)
                      |.+++..     ..++|++|++++|.+.+..+.   .+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus        90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            5544321     124555555555555433222   23445555555555554444455555555555555555554444


Q ss_pred             hhh-cCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCC
Q 046382          306 IEF-CQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQ  384 (691)
Q Consensus       306 ~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~  384 (691)
                      ..+ ..+++|++|++++|.+.+. +....+++|++|++++|.+++..+. +..+++|+.|++++|+++ .+|..+..+++
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~  238 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQN  238 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred             HHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCC
Confidence            433 2455555555555555533 2222345555555555555543332 444555555555555555 34444555555


Q ss_pred             ccEEecccCcCc-ccCCcCCCCCCCCCEEEcc
Q 046382          385 LNYLLLAHNYIK-GEIPVQLCQLKEVRLIDLS  415 (691)
Q Consensus       385 L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~  415 (691)
                      |++|++++|++. +..+..+..+++|+.++++
T Consensus       239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            555555555554 3344444445555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=3.9e-25  Score=242.36  Aligned_cols=267  Identities=23%  Similarity=0.325  Sum_probs=139.6

Q ss_pred             CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEc
Q 046382          168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL  247 (691)
Q Consensus       168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  247 (691)
                      ++++|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|.+++...    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence            4666666666665 4444433  55666666666665 4544    24555555555555553221    3455555555


Q ss_pred             cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCccc
Q 046382          248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGT  327 (691)
Q Consensus       248 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~  327 (691)
                      ++|.+++. |.   .+                        ++|+.|++++|.+++ +|.   .+++|++|++++|.+.+.
T Consensus       109 s~N~l~~l-~~---~l------------------------~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A          109 FSNPLTHL-PA---LP------------------------SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL  156 (622)
T ss_dssp             CSCCCCCC-CC---CC------------------------TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC
T ss_pred             cCCcCCCC-CC---CC------------------------CCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc
Confidence            55554421 21   23                        344444444444432 121   124555555555555432


Q ss_pred             CCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCC
Q 046382          328 LPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK  407 (691)
Q Consensus       328 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  407 (691)
                      . .  .+++|+.|++++|.++++.    ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++. +|.   .++
T Consensus       157 ~-~--~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~  221 (622)
T 3g06_A          157 P-A--LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPS  221 (622)
T ss_dssp             C-C--CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCT
T ss_pred             C-C--ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCC
Confidence            1 1  2345555555555555432    334556666666666653 222   23556666666666652 332   235


Q ss_pred             CCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecccc
Q 046382          408 EVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI  487 (691)
Q Consensus       408 ~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (691)
                      +|+.|++++|++++ +|.                                                             .
T Consensus       222 ~L~~L~Ls~N~L~~-lp~-------------------------------------------------------------~  239 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LPV-------------------------------------------------------------L  239 (622)
T ss_dssp             TCCEEECCSSCCSC-CCC-------------------------------------------------------------C
T ss_pred             CCCEEEccCCccCc-CCC-------------------------------------------------------------C
Confidence            56666666666652 221                                                             0


Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccC
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL  560 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  560 (691)
                      +++|+.|+|++|.++ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|++++..|..+..+
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            345666666666666 3443   4556666666666666 456666666666666666666666666555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.1e-24  Score=238.88  Aligned_cols=262  Identities=22%  Similarity=0.253  Sum_probs=203.9

Q ss_pred             CCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecC
Q 046382          217 SLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMP  296 (691)
Q Consensus       217 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  296 (691)
                      +++.|++++|.++. .|..+.  ++|+.|++++|.++ .+|.   .+++|+.|++++|.+++ +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            46666666666663 333332  56777777777766 3333   45677788888887764 333   56888899999


Q ss_pred             CCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcc
Q 046382          297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIP  376 (691)
Q Consensus       297 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~  376 (691)
                      +|.+++. |.   .+++|+.|++++|.+.+...   .+++|++|++++|.+++...    .+++|+.|++++|.+++ +|
T Consensus       110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~  177 (622)
T 3g06_A          110 SNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP  177 (622)
T ss_dssp             SCCCCCC-CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CC
T ss_pred             CCcCCCC-CC---CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc
Confidence            9888854 33   56899999999999986433   25899999999999986532    45789999999999995 55


Q ss_pred             hhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCccccccc
Q 046382          377 NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISA  456 (691)
Q Consensus       377 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  456 (691)
                         ..+++|++|++++|++++ +|..   +++|+.|++++|.++ .+|.                               
T Consensus       178 ---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~-------------------------------  218 (622)
T 3g06_A          178 ---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA-------------------------------  218 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC-------------------------------
T ss_pred             ---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC-------------------------------
Confidence               557899999999999985 4432   478999999999987 2332                               


Q ss_pred             ccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCC
Q 046382          457 CLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNL  536 (691)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  536 (691)
                                                    .+++|+.|++++|.+++ +|   ..+++|+.|+|++|+|+. +|.   .+
T Consensus       219 ------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~  260 (622)
T 3g06_A          219 ------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LP  260 (622)
T ss_dssp             ------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred             ------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---cc
Confidence                                          14689999999999995 56   456899999999999994 555   67


Q ss_pred             CcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC
Q 046382          537 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       537 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  579 (691)
                      ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus       261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            89999999999999 7788999999999999999999987665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.5e-27  Score=240.44  Aligned_cols=248  Identities=19%  Similarity=0.243  Sum_probs=154.5

Q ss_pred             CCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccC-CCcchhhc-------CCCCCCEEEccCCcCcccCCCC---
Q 046382          263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE-GPIPIEFC-------QLSALKILDLSNNSIFGTLPSC---  331 (691)
Q Consensus       263 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~---  331 (691)
                      .++|+.|++++|.+  .+|..+...  |+.|++++|.+. ...+..+.       .+++|++|++++|.+.+..+..   
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            34455555555555  344433332  555666666553 22333332       4666666666666666554443   


Q ss_pred             CCCCcccEEEccCCccccccccccCCC-----CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCccc--CCcC--
Q 046382          332 FSPAHIEQVHLSKNKIEGRLESIIHDS-----PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE--IPVQ--  402 (691)
Q Consensus       332 ~~~~~L~~L~l~~n~i~~~~~~~~~~~-----~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~--  402 (691)
                      ..+++|++|++++|.+++. +..+..+     ++|++|++++|++++..+..++.+++|++|++++|++.+.  .+..  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            2456666666666666655 4444444     6777777777777766667777777777777777776543  1222  


Q ss_pred             CCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccce
Q 046382          403 LCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYY  482 (691)
Q Consensus       403 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (691)
                      +..+++|++|++++|++++ ++......                                                    
T Consensus       197 ~~~l~~L~~L~L~~N~l~~-~~~~~~~~----------------------------------------------------  223 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMET-PSGVCSAL----------------------------------------------------  223 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCC-HHHHHHHH----------------------------------------------------
T ss_pred             hccCCCCCEEECCCCcCcc-hHHHHHHH----------------------------------------------------
Confidence            2677778888888877752 11110000                                                    


Q ss_pred             eccccccccceEEcCCCeeeeccc-hhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCC
Q 046382          483 YQGRILTSMSGIDLSCNKLTGEIP-TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN  561 (691)
Q Consensus       483 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  561 (691)
                      +  ..+++|++|++++|.+++..| ..+..+++|++|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..++
T Consensus       224 ~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~  296 (312)
T 1wwl_A          224 A--AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP  296 (312)
T ss_dssp             H--HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred             H--hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence            0  014677778888888776554 44556778888888888887 5566555  7788888888888755 55 77778


Q ss_pred             CCCeEEccCCcccc
Q 046382          562 TLEVFKVAYNNLSG  575 (691)
Q Consensus       562 ~L~~L~l~~N~l~~  575 (691)
                      +|+.|++++|++++
T Consensus       297 ~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          297 QVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEEECTTCTTTC
T ss_pred             CCCEEeccCCCCCC
Confidence            88888888888765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.2e-26  Score=235.39  Aligned_cols=202  Identities=28%  Similarity=0.299  Sum_probs=90.5

Q ss_pred             CCCCCCEEeccccccccccchhHh-hcCCCCCEEEcccccCCccCcccccCC-----CCCCEEEccCCcCcccCCccccC
Q 046382          189 DMKMLERLDISDNQLTGEIPERMA-TGCFSLKILALSNNSLQGHIFSKKFNL-----TNLMRLQLDGNKFIGEIPESLSK  262 (691)
Q Consensus       189 ~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~  262 (691)
                      ++++|++|++++|.+++.+|..++ ..+++|++|++++|++++. +..+..+     ++|++|++++|++.+..+..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            344444444444444444444332 3344444444444444443 3333333     55555555555555444455555


Q ss_pred             CCCCCEEEccCCcCCCc--chhhh--hcCCCCCEEecCCCccCCC---cchhhcCCCCCCEEEccCCcCcccCCC--CCC
Q 046382          263 CYLLGGLYLSDNHLSGE--IPRWL--GNLSALEGIRMPNNNLEGP---IPIEFCQLSALKILDLSNNSIFGTLPS--CFS  333 (691)
Q Consensus       263 l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~  333 (691)
                      +++|+.|++++|++.+.  .+..+  ..+++|++|++++|.+++.   ....+..+++|++|++++|.+.+..+.  ...
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            55555555555554432  12222  4555666666666655521   112234455666666666665543321  112


Q ss_pred             CCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCc
Q 046382          334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIK  396 (691)
Q Consensus       334 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~  396 (691)
                      +++|++|++++|.++.+ |..+.  ++|+.|++++|++++. |. +..+++|++|++++|+++
T Consensus       252 l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CTTCCEEECTTSCCSSC-CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             cCCCCEEECCCCccChh-hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            34444444444444422 21111  3444444444444432 22 334444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-26  Score=248.00  Aligned_cols=236  Identities=22%  Similarity=0.208  Sum_probs=179.0

Q ss_pred             CCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEc
Q 046382          263 CYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHL  342 (691)
Q Consensus       263 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l  342 (691)
                      +++|+.|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+    .++|+.|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            3466667777776666666666677777777777777665443  6667777777777777665432    267778888


Q ss_pred             cCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCC-CCCCCCEEEccCCCCCC
Q 046382          343 SKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLC-QLKEVRLIDLSHNNLSG  421 (691)
Q Consensus       343 ~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~  421 (691)
                      ++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            88877766543   357788888888888877777788888888888888888887777765 68889999999888874


Q ss_pred             CCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCee
Q 046382          422 HIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKL  501 (691)
Q Consensus       422 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  501 (691)
                      ..+.                                                            ..+++|+.|+|++|.+
T Consensus       184 ~~~~------------------------------------------------------------~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          184 VKGQ------------------------------------------------------------VVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             EECC------------------------------------------------------------CCCTTCCEEECCSSCC
T ss_pred             cccc------------------------------------------------------------ccCCCCCEEECCCCCC
Confidence            3111                                                            0167889999999999


Q ss_pred             eeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc-ccCCcccccCCCCCeEEcc
Q 046382          502 TGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH-GKIPPQLIVLNTLEVFKVA  569 (691)
Q Consensus       502 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~  569 (691)
                      ++.. ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       204 ~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          204 AFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            8644 458889999999999999984 6777889999999999999998 6677778888888888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=7.6e-25  Score=218.22  Aligned_cols=208  Identities=21%  Similarity=0.230  Sum_probs=140.0

Q ss_pred             CcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEc
Q 046382          335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL  414 (691)
Q Consensus       335 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  414 (691)
                      +++++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            45666666666666665556666677777777777766555556666777777777777776666666777777777777


Q ss_pred             cCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceE
Q 046382          415 SHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGI  494 (691)
Q Consensus       415 ~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  494 (691)
                      ++|.+.+..+..+..                                                          +++|++|
T Consensus       108 ~~n~l~~~~~~~~~~----------------------------------------------------------l~~L~~L  129 (276)
T 2z62_A          108 VETNLASLENFPIGH----------------------------------------------------------LKTLKEL  129 (276)
T ss_dssp             TTSCCCCSTTCCCTT----------------------------------------------------------CTTCCEE
T ss_pred             CCCCccccCchhccc----------------------------------------------------------CCCCCEE
Confidence            777665332221111                                                          4667777


Q ss_pred             EcCCCeeeec-cchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCC----EEeCCCccccccCCcccccCCCCCeEEcc
Q 046382          495 DLSCNKLTGE-IPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIE----SLDLSYNLLHGKIPPQLIVLNTLEVFKVA  569 (691)
Q Consensus       495 ~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  569 (691)
                      ++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+    +|++++|++++..+..+. ..+|+.|+++
T Consensus       130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~  208 (276)
T 2z62_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALD  208 (276)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECC
T ss_pred             ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECC
Confidence            7777777653 467777777777777777777766666666666666    777788877755554443 3477788888


Q ss_pred             CCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382          570 YNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       570 ~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      +|++++..+. ...+..++.+++++||+.|+|+
T Consensus       209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            8877766554 3556677777888888888876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=9.2e-25  Score=218.35  Aligned_cols=183  Identities=23%  Similarity=0.199  Sum_probs=121.5

Q ss_pred             CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCc
Q 046382          359 PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHE  438 (691)
Q Consensus       359 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~  438 (691)
                      ++++.|++++|.+++..+..+..+++|++|++++|++++..+.  ..+++|++|++++|.++ .+|..+..         
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~---------   98 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT---------   98 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTT---------
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhcc---------
Confidence            3455555555555544445555555566666666655543222  45666666666666664 33322111         


Q ss_pred             ccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeE
Q 046382          439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHAL  518 (691)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  518 (691)
                                                                       +++|++|++++|++++..+..|..+++|++|
T Consensus        99 -------------------------------------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L  129 (290)
T 1p9a_G           99 -------------------------------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (290)
T ss_dssp             -------------------------------------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             -------------------------------------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence                                                             4566777777777776666677777888888


Q ss_pred             eCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCC
Q 046382          519 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLC  598 (691)
Q Consensus       519 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c  598 (691)
                      +|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++...+.......++.+++.||||.|
T Consensus       130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            88888887776777777888888888888887666666777888888888888887554445556677778888888888


Q ss_pred             CCCC
Q 046382          599 GKPL  602 (691)
Q Consensus       599 ~~~l  602 (691)
                      +|.+
T Consensus       210 ~c~~  213 (290)
T 1p9a_G          210 NCEI  213 (290)
T ss_dssp             SGGG
T ss_pred             cCcc
Confidence            8864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.8e-24  Score=213.08  Aligned_cols=205  Identities=20%  Similarity=0.217  Sum_probs=106.6

Q ss_pred             CCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEeccc
Q 046382          313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAH  392 (691)
Q Consensus       313 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~  392 (691)
                      ..+.++++++.++..+...  ++++++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            3556666666665322211  24556666666655555555555555555555555555543333445555555555555


Q ss_pred             CcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccE
Q 046382          393 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETV  472 (691)
Q Consensus       393 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (691)
                      |++++..+..|..+++|++|++++|++                                                     
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l-----------------------------------------------------  121 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQL-----------------------------------------------------  121 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCC-----------------------------------------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCcc-----------------------------------------------------
Confidence            555544444445555555555555554                                                     


Q ss_pred             EEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccccc
Q 046382          473 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK  552 (691)
Q Consensus       473 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  552 (691)
                                                   ++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++.
T Consensus       122 -----------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A          122 -----------------------------KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             -----------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             -----------------------------CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence                                         434444444555555555555555544444455555555555555555544


Q ss_pred             CCcccccCCCCCeEEccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382          553 IPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       553 ~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      .+..|..+++|+.|++++|++++..+. ...+..++.+++++|||.|+|+
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            444455555555555555555543332 2334455555566666666664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2.3e-23  Score=206.57  Aligned_cols=203  Identities=22%  Similarity=0.264  Sum_probs=153.1

Q ss_pred             CCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEec
Q 046382          288 SALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDL  366 (691)
Q Consensus       288 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  366 (691)
                      ...+.++++++.++. +|..+.  +++++|++++|.+.+..+..+ .+++|++|++++|.++...+..+..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            357899999999984 555443  589999999999997776555 7899999999999999888888899999999999


Q ss_pred             cCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCccc
Q 046382          367 SYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIW  446 (691)
Q Consensus       367 s~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~  446 (691)
                      ++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..                       
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------------------  149 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-----------------------  149 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-----------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-----------------------
Confidence            999999777778899999999999999999887777888888888888888776322                       


Q ss_pred             ccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCC
Q 046382          447 CGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLT  526 (691)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  526 (691)
                                                                                 +..|..+++|++|+|++|+++
T Consensus       150 -----------------------------------------------------------~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          150 -----------------------------------------------------------KGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             -----------------------------------------------------------TTTTTTCTTCCEEECCSSCCS
T ss_pred             -----------------------------------------------------------HhHccCCcccceeEecCCcCc
Confidence                                                                       223444555555555555555


Q ss_pred             cccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccc
Q 046382          527 GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG  575 (691)
Q Consensus       527 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  575 (691)
                      +..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            4444455556666666666666655444455556666666666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.6e-23  Score=208.70  Aligned_cols=222  Identities=20%  Similarity=0.238  Sum_probs=149.2

Q ss_pred             EEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccc
Q 046382          147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN  226 (691)
Q Consensus       147 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  226 (691)
                      .+..+..++ .+|..+.   ++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|
T Consensus        12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence            344444454 5555432   36777777777777655556777777777777777776 555544566777777777777


Q ss_pred             cCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCc-chhhhhcCCCCCEEecCCCccCCCcc
Q 046382          227 SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE-IPRWLGNLSALEGIRMPNNNLEGPIP  305 (691)
Q Consensus       227 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~  305 (691)
                      .+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. +|..+..+++|++|++++|.+++..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            77766666677777777777777777766555677777777777777777653 46777777888888888887776655


Q ss_pred             hhhcCCCCCC----EEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCC
Q 046382          306 IEFCQLSALK----ILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHG  373 (691)
Q Consensus       306 ~~~~~l~~L~----~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~  373 (691)
                      ..+..+++|+    +|++++|.+.+..+..+...+|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            5665555555    7777777777666666555566667776666666555555666666666666666553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=7.5e-23  Score=204.47  Aligned_cols=204  Identities=22%  Similarity=0.227  Sum_probs=165.9

Q ss_pred             hcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccE
Q 046382          308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNY  387 (691)
Q Consensus       308 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  387 (691)
                      +..++++++++++++.+....+..  +++++.|++++|.+++..+..+..+++|+.|++++|.+++..+  ...+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence            456677788888887777544333  3678888888888888877888888999999999998885433  267889999


Q ss_pred             EecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCC
Q 046382          388 LLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG  467 (691)
Q Consensus       388 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (691)
                      |++++|+++ .+|..+..+++|++|++++|++++..|..+..                                      
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------------------------------  122 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------------  122 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence            999999988 66777888899999999999987544443332                                      


Q ss_pred             CcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCc
Q 046382          468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN  547 (691)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  547 (691)
                                          +++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|+|++|
T Consensus       123 --------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          123 --------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             --------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             --------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence                                678999999999999777777889999999999999999777777889999999999999


Q ss_pred             cccccCCcccccCCCCCeEEccCCcccc
Q 046382          548 LLHGKIPPQLIVLNTLEVFKVAYNNLSG  575 (691)
Q Consensus       548 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~  575 (691)
                      +++ .+|..+...++|+.+++++|++.+
T Consensus       183 ~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          183 SLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCC-ccChhhcccccCCeEEeCCCCccC
Confidence            998 677778888899999999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=4.5e-23  Score=204.57  Aligned_cols=203  Identities=21%  Similarity=0.246  Sum_probs=144.4

Q ss_pred             cCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEE
Q 046382          309 CQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYL  388 (691)
Q Consensus       309 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  388 (691)
                      ..+++|+.|++++|.+. ..+....+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            34455555555555544 222333455556666666655543  256677777777887777776666667777888888


Q ss_pred             ecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCC
Q 046382          389 LLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGK  468 (691)
Q Consensus       389 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (691)
                      ++++|++++..+..+..+++|++|++++|.+++..+..+..                                       
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------------------------  155 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK---------------------------------------  155 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------------------
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc---------------------------------------
Confidence            88888887666666777888888888888776443332222                                       


Q ss_pred             cccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcc
Q 046382          469 EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL  548 (691)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  548 (691)
                                         +++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus       156 -------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          156 -------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             -------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence                               5678888888888886667777888888999999998888777778888899999999988


Q ss_pred             ccccCCcccccCCCCCeEEccCCcccccCCC
Q 046382          549 LHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       549 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  579 (691)
                      +.+.       +++|+.+++++|.++|.+|.
T Consensus       217 ~~~~-------~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          217 WDCT-------CPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             BCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred             cccc-------CcHHHHHHHHHHhCCCcccC
Confidence            8744       44688888888888888776

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.1e-23  Score=218.44  Aligned_cols=259  Identities=18%  Similarity=0.171  Sum_probs=136.7

Q ss_pred             EEccCCcCcccCCccccCCCCCCEEEccCCcCCCcch----hhhhcCC-CCCEEecCCCccCCCcchhhcCC-----CCC
Q 046382          245 LQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIP----RWLGNLS-ALEGIRMPNNNLEGPIPIEFCQL-----SAL  314 (691)
Q Consensus       245 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L  314 (691)
                      ++++.|.+.+.+|..+...++|+.|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3455555555555444444445555555555554444    4444555 55555555555554444444332     455


Q ss_pred             CEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCC-CCccEEeccCCCCCCCcchhh----cC-CCCccEE
Q 046382          315 KILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDS-PYLVTLDLSYNRLHGSIPNRI----DR-LPQLNYL  388 (691)
Q Consensus       315 ~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~----~~-l~~L~~L  388 (691)
                      ++|++++|.+.+..+..+                   ...+..+ ++|+.|++++|.+++..+..+    .. .++|++|
T Consensus        83 ~~L~Ls~n~l~~~~~~~l-------------------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  143 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDEL-------------------VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL  143 (362)
T ss_dssp             CEEECCSSCGGGSCHHHH-------------------HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred             cEEECcCCcCChHHHHHH-------------------HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence            555555554443222110                   0112223 556666666666654444332    22 2466666


Q ss_pred             ecccCcCcccCC----cCCCCCC-CCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCC
Q 046382          389 LLAHNYIKGEIP----VQLCQLK-EVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSA  463 (691)
Q Consensus       389 ~L~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (691)
                      ++++|++++...    ..+..++ +|++|++++|++++..+..+...-                                
T Consensus       144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------------------------------  191 (362)
T 3goz_A          144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL--------------------------------  191 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------
T ss_pred             EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------
Confidence            666666653222    2223333 677777777766654444333210                                


Q ss_pred             CCCCCcccEEEEecCccceeccccc-cccceEEcCCCeeeec----cchhhhc-ccCCCeEeCCCCcCCcccc----hhh
Q 046382          464 PPMGKEETVQFTTKNMSYYYQGRIL-TSMSGIDLSCNKLTGE----IPTQIGY-LSGIHALNLSHNNLTGTIP----TTF  533 (691)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~  533 (691)
                                            ... ++|++|||++|.+++.    ++..+.. .++|++|+|++|.+++..+    ..+
T Consensus       192 ----------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~  249 (362)
T 3goz_A          192 ----------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK  249 (362)
T ss_dssp             ----------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred             ----------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence                                  002 3667777777776642    3444444 3477777777777765433    334


Q ss_pred             cCCCcCCEEeCCCcccccc-------CCcccccCCCCCeEEccCCccccc
Q 046382          534 SNLKQIESLDLSYNLLHGK-------IPPQLIVLNTLEVFKVAYNNLSGK  576 (691)
Q Consensus       534 ~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~l~~N~l~~~  576 (691)
                      ..+++|+.|+|++|.+.+.       ++..+..+++|+.|++++|++...
T Consensus       250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            5667777777777774322       223455667777777777777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.4e-22  Score=199.35  Aligned_cols=179  Identities=22%  Similarity=0.239  Sum_probs=79.1

Q ss_pred             CCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCc
Q 046382           91 HQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLM  170 (691)
Q Consensus        91 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~  170 (691)
                      .+++|++|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.++ .++...+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred             cccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCC
Confidence            3444555555555543 2332  24455555555555554332  23444455555555555444 33333333344455


Q ss_pred             EEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCC
Q 046382          171 DLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGN  250 (691)
Q Consensus       171 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  250 (691)
                      +|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            5555555444444444444444444444444444 333333334444444444444444333333344444444444444


Q ss_pred             cCcccCCccccCCCCCCEEEccCCcC
Q 046382          251 KFIGEIPESLSKCYLLGGLYLSDNHL  276 (691)
Q Consensus       251 ~l~~~~~~~~~~l~~L~~L~l~~n~~  276 (691)
                      ++.+..+..+..+++|+.|++++|++
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCc
Confidence            44433333334444444444444433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.3e-22  Score=205.39  Aligned_cols=131  Identities=16%  Similarity=0.184  Sum_probs=58.6

Q ss_pred             CCCEEecCCCccCCCcch---hhcCCCCCCEEEccCCcCcccCCCC---CCCCcccEEEccCCccccccc----cccCCC
Q 046382          289 ALEGIRMPNNNLEGPIPI---EFCQLSALKILDLSNNSIFGTLPSC---FSPAHIEQVHLSKNKIEGRLE----SIIHDS  358 (691)
Q Consensus       289 ~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~---~~~~~L~~L~l~~n~i~~~~~----~~~~~~  358 (691)
                      .++.+.+.++.+......   .+..+++|++|++++|.+.+..+..   ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            455666666554321110   1112344666666666655544443   234555555555555543222    122334


Q ss_pred             CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCccc---C-CcCCCCCCCCCEEEccCCCC
Q 046382          359 PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGE---I-PVQLCQLKEVRLIDLSHNNL  419 (691)
Q Consensus       359 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~---~-~~~~~~l~~L~~L~l~~n~l  419 (691)
                      ++|++|++++|.+.+..+..+..+++|++|++++|++.+.   . +..+..+++|++|++++|++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  209 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM  209 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence            4455555555554444444444444555555555544321   1 11223444444444444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.2e-21  Score=191.86  Aligned_cols=184  Identities=20%  Similarity=0.204  Sum_probs=152.2

Q ss_pred             CcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEc
Q 046382          335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL  414 (691)
Q Consensus       335 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  414 (691)
                      ...++++++++.++.++.. +  .++++.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4567899999888865443 2  268899999999999887778889999999999999999888888889999999999


Q ss_pred             cCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceE
Q 046382          415 SHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGI  494 (691)
Q Consensus       415 ~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  494 (691)
                      ++|++++..+..+..                                                          +++|++|
T Consensus        91 ~~n~l~~~~~~~~~~----------------------------------------------------------l~~L~~L  112 (251)
T 3m19_A           91 ANNQLASLPLGVFDH----------------------------------------------------------LTQLDKL  112 (251)
T ss_dssp             TTSCCCCCCTTTTTT----------------------------------------------------------CTTCCEE
T ss_pred             CCCcccccChhHhcc----------------------------------------------------------cCCCCEE
Confidence            999987544443322                                                          6788999


Q ss_pred             EcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccc
Q 046382          495 DLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS  574 (691)
Q Consensus       495 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  574 (691)
                      +|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            99999998777777888999999999999998777778889999999999999999887778888999999999999988


Q ss_pred             ccCCC
Q 046382          575 GKIPD  579 (691)
Q Consensus       575 ~~~p~  579 (691)
                      +....
T Consensus       193 c~~~~  197 (251)
T 3m19_A          193 CSRCE  197 (251)
T ss_dssp             TTSTT
T ss_pred             CCccc
Confidence            75443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=4.6e-22  Score=200.85  Aligned_cols=82  Identities=17%  Similarity=0.336  Sum_probs=44.6

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      +++|++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..+  +..+++|+.|+
T Consensus       150 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  223 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT  223 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred             CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEE
Confidence            3455555555555553222  5555566666666666553332  5555666666666666554332  55555666666


Q ss_pred             ccCCcccc
Q 046382          568 VAYNNLSG  575 (691)
Q Consensus       568 l~~N~l~~  575 (691)
                      +++|++++
T Consensus       224 l~~N~i~~  231 (308)
T 1h6u_A          224 LTNQTITN  231 (308)
T ss_dssp             EEEEEEEC
T ss_pred             ccCCeeec
Confidence            66665554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2.2e-21  Score=190.00  Aligned_cols=180  Identities=22%  Similarity=0.255  Sum_probs=126.0

Q ss_pred             CCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEeccc
Q 046382          313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAH  392 (691)
Q Consensus       313 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~  392 (691)
                      ..++++++++.+...+...  +++++.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            4567777777776433332  35777777777777777776777777777777777777766666677777777777777


Q ss_pred             CcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccE
Q 046382          393 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETV  472 (691)
Q Consensus       393 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (691)
                      |++++..+..|..+++|++|++++|.+++..+..+..                                           
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------  129 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-------------------------------------------  129 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-------------------------------------------
Confidence            7777666666777777777777777776433322221                                           


Q ss_pred             EEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccccc
Q 046382          473 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK  552 (691)
Q Consensus       473 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  552 (691)
                                     +++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++..
T Consensus       130 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          130 ---------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ---------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                           56777777777777765565677777777777777777766666777777777777777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=5.4e-22  Score=192.89  Aligned_cols=197  Identities=13%  Similarity=0.141  Sum_probs=113.1

Q ss_pred             CcccEEEccCCccccccccccCCCCCccEEeccCCC-CCCCcchhhcCCCCccEEeccc-CcCcccCCcCCCCCCCCCEE
Q 046382          335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNR-LHGSIPNRIDRLPQLNYLLLAH-NYIKGEIPVQLCQLKEVRLI  412 (691)
Q Consensus       335 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L  412 (691)
                      +++++|++++|+++++.+..+..+++|+.|++++|. ++...+..+..+++|++|++++ |++++..+..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            355566666666655555556666666666666664 5544444556666666666665 66665555556666666666


Q ss_pred             EccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccc
Q 046382          413 DLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMS  492 (691)
Q Consensus       413 ~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  492 (691)
                      ++++|++++ +|. +..                                                          +++|+
T Consensus       111 ~l~~n~l~~-lp~-~~~----------------------------------------------------------l~~L~  130 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTK----------------------------------------------------------VYSTD  130 (239)
T ss_dssp             EEEEECCCS-CCC-CTT----------------------------------------------------------CCBCC
T ss_pred             eCCCCCCcc-ccc-ccc----------------------------------------------------------ccccc
Confidence            666666653 332 111                                                          22333


Q ss_pred             ---eEEcCCC-eeeeccchhhhcccCCC-eEeCCCCcCCcccchhhcCCCcCCEEeCCCcc-ccccCCcccccC-CCCCe
Q 046382          493 ---GIDLSCN-KLTGEIPTQIGYLSGIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL-LHGKIPPQLIVL-NTLEV  565 (691)
Q Consensus       493 ---~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~  565 (691)
                         +|++++| .+++..+..|..+++|+ +|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.
T Consensus       131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~  209 (239)
T 2xwt_C          131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL  209 (239)
T ss_dssp             SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred             cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence               6666666 66655555566666666 6666666666333333433 666666666663 665555566666 66666


Q ss_pred             EEccCCcccccCCCCCCCCCcCcCcccCC
Q 046382          566 FKVAYNNLSGKIPDRAQFSTFEEDSYEGN  594 (691)
Q Consensus       566 L~l~~N~l~~~~p~~~~~~~~~~~~~~~N  594 (691)
                      |++++|++++..+.  .+..++.+.+.++
T Consensus       210 L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          210 LDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             EECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             EECCCCccccCChh--HhccCceeeccCc
Confidence            66666666643332  4555555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.1e-23  Score=220.61  Aligned_cols=251  Identities=18%  Similarity=0.224  Sum_probs=146.7

Q ss_pred             CCccccCCCCCCEEEccCCcCCCcchhh----hhcCCCCCEEecCCCccC---CCcchhh-------cCCCCCCEEEccC
Q 046382          256 IPESLSKCYLLGGLYLSDNHLSGEIPRW----LGNLSALEGIRMPNNNLE---GPIPIEF-------CQLSALKILDLSN  321 (691)
Q Consensus       256 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~~~---~~~~~~~-------~~l~~L~~L~L~~  321 (691)
                      ++..+..+++|+.|++++|.+++..+..    +..+++|++|++++|.+.   +.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            3445556666777777777666543332    445666666666665332   2233332       3445555555555


Q ss_pred             CcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhc----CC---------CCccEE
Q 046382          322 NSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRID----RL---------PQLNYL  388 (691)
Q Consensus       322 n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~----~l---------~~L~~L  388 (691)
                      |.+.+....                   ..+..+..+++|+.|++++|.+++..+..+.    .+         ++|++|
T Consensus       104 n~l~~~~~~-------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A          104 NAFGPTAQE-------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             CCCCTTTHH-------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             CcCCHHHHH-------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence            554421000                   2334455566666666666666533222222    22         667777


Q ss_pred             ecccCcCc-ccCC---cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCC
Q 046382          389 LLAHNYIK-GEIP---VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAP  464 (691)
Q Consensus       389 ~L~~n~i~-~~~~---~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (691)
                      ++++|+++ +..+   ..+..+++|++|++++|.++......+....                                 
T Consensus       165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~---------------------------------  211 (386)
T 2ca6_A          165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG---------------------------------  211 (386)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT---------------------------------
T ss_pred             ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH---------------------------------
Confidence            77777765 2222   2445566777777777766521000000000                                 


Q ss_pred             CCCCcccEEEEecCccceeccccccccceEEcCCCeee----eccchhhhcccCCCeEeCCCCcCCcc----cchhhc--
Q 046382          465 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT----GEIPTQIGYLSGIHALNLSHNNLTGT----IPTTFS--  534 (691)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~--  534 (691)
                                          ...+++|+.|+|++|.++    ..+|..+..+++|+.|+|++|.+++.    ++..+.  
T Consensus       212 --------------------l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          212 --------------------LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             --------------------GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             --------------------hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence                                011567777777777775    45677778888888888888888755    456663  


Q ss_pred             CCCcCCEEeCCCccccc----cCCccc-ccCCCCCeEEccCCcccccCC
Q 046382          535 NLKQIESLDLSYNLLHG----KIPPQL-IVLNTLEVFKVAYNNLSGKIP  578 (691)
Q Consensus       535 ~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~p  578 (691)
                      .+++|++|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            37888888888888886    466666 557888888888888876553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.5e-22  Score=208.09  Aligned_cols=252  Identities=16%  Similarity=0.189  Sum_probs=147.5

Q ss_pred             CCEEEccCCCCcccCchHHhhcC--CCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCccc-CchhhhhCCCCCcE
Q 046382           95 LKNADLSHLNLSGQFPNWLLENN--TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGH-IPVEIGTYLPGLMD  171 (691)
Q Consensus        95 L~~L~L~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~l~~L~~  171 (691)
                      ++.++++++.+.   +. .+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++.. ...+++|++
T Consensus        49 ~~~l~l~~~~~~---~~-~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~  122 (336)
T 2ast_B           49 WQTLDLTGKNLH---PD-VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQN  122 (336)
T ss_dssp             SSEEECTTCBCC---HH-HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSE
T ss_pred             heeeccccccCC---HH-HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCE
Confidence            566666666554   12 23444  6666677766666554443 44566677777777666543 3333 333667777


Q ss_pred             EEccCCcccccCchhhhCCCCCCEEecccc-ccccccchhHhhcCCCCCEEEcccc-cCCcc-CcccccCCC-CCCEEEc
Q 046382          172 LNLSRNAFNGSIPSSFADMKMLERLDISDN-QLTGEIPERMATGCFSLKILALSNN-SLQGH-IFSKKFNLT-NLMRLQL  247 (691)
Q Consensus       172 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~L  247 (691)
                      |++++|.+++..+..++.+++|++|++++| .+++......+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            777777666566666666777777777776 4553222233355667777777776 66543 234455566 7777777


Q ss_pred             cCC--cCc-ccCCccccCCCCCCEEEccCCc-CCCcchhhhhcCCCCCEEecCCCc-cCCCcchhhcCCCCCCEEEccCC
Q 046382          248 DGN--KFI-GEIPESLSKCYLLGGLYLSDNH-LSGEIPRWLGNLSALEGIRMPNNN-LEGPIPIEFCQLSALKILDLSNN  322 (691)
Q Consensus       248 ~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n  322 (691)
                      ++|  .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            776  333 2334455666777777777776 555556666777777777777774 22222224666777777777776


Q ss_pred             cCcccCCCCC-CC-CcccEEEccCCccccccccccC
Q 046382          323 SIFGTLPSCF-SP-AHIEQVHLSKNKIEGRLESIIH  356 (691)
Q Consensus       323 ~i~~~~~~~~-~~-~~L~~L~l~~n~i~~~~~~~~~  356 (691)
                       +..   ..+ .. ..++.|++++|.+++..+..+.
T Consensus       283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          283 -VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             -SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             -cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence             221   111 11 2355666777777766665544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3.7e-22  Score=206.79  Aligned_cols=269  Identities=19%  Similarity=0.133  Sum_probs=119.5

Q ss_pred             EEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCch---HHhhcCC-CCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382           74 ISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPN---WLLENNT-NLVMLLLANNSLFGSFRMPIHSHQNLATLDV  149 (691)
Q Consensus        74 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  149 (691)
                      ++++.+.+++.+|..+...++|++|++++|.+++..+.   ..+..++ +|++|++++|++.+..+..+..+        
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~--------   74 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI--------   74 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence            34455555555555444444455555555555422220   1224444 45555555555444333333322        


Q ss_pred             cCCcCcccCchhhhhCCCCCcEEEccCCcccccCchh----hhCC-CCCCEEeccccccccccchhHh---hc-CCCCCE
Q 046382          150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSS----FADM-KMLERLDISDNQLTGEIPERMA---TG-CFSLKI  220 (691)
Q Consensus       150 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~---~~-l~~L~~  220 (691)
                                  +....++|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+.   .. .++|++
T Consensus        75 ------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  142 (362)
T 3goz_A           75 ------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS  142 (362)
T ss_dssp             ------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred             ------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence                        0000134444444444444333332    2222 4455555555544422222211   11 134444


Q ss_pred             EEcccccCCccCcc----cccCCC-CCCEEEccCCcCcccCCc----cccCC-CCCCEEEccCCcCCCc----chhhhhc
Q 046382          221 LALSNNSLQGHIFS----KKFNLT-NLMRLQLDGNKFIGEIPE----SLSKC-YLLGGLYLSDNHLSGE----IPRWLGN  286 (691)
Q Consensus       221 L~l~~n~l~~~~~~----~~~~l~-~L~~L~L~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~  286 (691)
                      |++++|.+++....    .+...+ +|++|++++|++++..+.    .+..+ ++|+.|++++|.+++.    ++..+..
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence            44444444432211    122232 555555555555443332    22233 3555566665555432    2333333


Q ss_pred             -CCCCCEEecCCCccCCCcchh----hcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCc
Q 046382          287 -LSALEGIRMPNNNLEGPIPIE----FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYL  361 (691)
Q Consensus       287 -l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L  361 (691)
                       .++|++|++++|.+.+..+..    +..+++|++|++++|.+.+..+..               + ...+..+..+++|
T Consensus       223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~---------------~-~~l~~~~~~l~~L  286 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ---------------C-KALGAAFPNIQKI  286 (362)
T ss_dssp             SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH---------------H-HHHHTTSTTCCEE
T ss_pred             CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHH---------------H-HHHHHHhccCCce
Confidence             236666666666665443322    234455555555555432211100               0 1123356677788


Q ss_pred             cEEeccCCCCCCCcchh
Q 046382          362 VTLDLSYNRLHGSIPNR  378 (691)
Q Consensus       362 ~~L~ls~n~i~~~~~~~  378 (691)
                      +.||+++|.+.+..+..
T Consensus       287 ~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          287 ILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             EEECTTSCBCCGGGCHH
T ss_pred             EEEecCCCcCCCcchHH
Confidence            88888888887654433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.9e-22  Score=209.82  Aligned_cols=239  Identities=18%  Similarity=0.211  Sum_probs=109.0

Q ss_pred             chhhcCCCCCCEEEccCCCCcccCchHH---hhcCCCCCEEEccCCcc---cccCCcCc-------cCCCccCEEEccCC
Q 046382           86 PKFLYHQHDLKNADLSHLNLSGQFPNWL---LENNTNLVMLLLANNSL---FGSFRMPI-------HSHQNLATLDVSNN  152 (691)
Q Consensus        86 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~---~~~~~~~l-------~~l~~L~~L~Ls~n  152 (691)
                      +..+..+++|++|+|++|.+.+..+..+   +..+++|++|+|++|.+   .+..|..+       ..+++|++|++++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            3444455556666666555543322221   23455555555555432   22222222       44555555555555


Q ss_pred             cCcc----cCchhhhhCCCCCcEEEccCCcccccCchhhh----CC---------CCCCEEecccccccc-ccch--hHh
Q 046382          153 FFHG----HIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFA----DM---------KMLERLDISDNQLTG-EIPE--RMA  212 (691)
Q Consensus       153 ~i~~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~L~~n~l~~-~~~~--~~~  212 (691)
                      .+++    .++..+.. +++|++|++++|.++...+..+.    .+         ++|++|++++|++++ .++.  ..+
T Consensus       105 ~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            5553    13333332 45555555555555432222222    22         555555555555541 2221  122


Q ss_pred             hcCCCCCEEEcccccCCc-----cCcccccCCCCCCEEEccCCcCc----ccCCccccCCCCCCEEEccCCcCCCc----
Q 046382          213 TGCFSLKILALSNNSLQG-----HIFSKKFNLTNLMRLQLDGNKFI----GEIPESLSKCYLLGGLYLSDNHLSGE----  279 (691)
Q Consensus       213 ~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~----  279 (691)
                      ..+++|++|++++|+++.     ..+..+..+++|+.|++++|.++    ..++..+..+++|+.|++++|.+++.    
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            345555555555555542     11123444555555555555553    23344445555555555555555433    


Q ss_pred             chhhhhc--CCCCCEEecCCCccCC----Ccchhh-cCCCCCCEEEccCCcCc
Q 046382          280 IPRWLGN--LSALEGIRMPNNNLEG----PIPIEF-CQLSALKILDLSNNSIF  325 (691)
Q Consensus       280 ~~~~l~~--l~~L~~L~l~~n~~~~----~~~~~~-~~l~~L~~L~L~~n~i~  325 (691)
                      ++..+..  +++|++|++++|.+++    .++..+ ..+++|++|++++|.+.
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            2333322  4555555555555543    133333 33455555555555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=6.6e-22  Score=203.18  Aligned_cols=254  Identities=15%  Similarity=0.120  Sum_probs=160.3

Q ss_pred             cccEEEecCCCCCCCcchhhcCC--CCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCccccc-CCcCccCCCccCE
Q 046382           70 QLTSISLSGYIDGGTFPKFLYHQ--HDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGS-FRMPIHSHQNLAT  146 (691)
Q Consensus        70 ~L~~L~L~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~  146 (691)
                      .+++++++++.+.   +..+..+  ++++.|++++|.+.+..+.  +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4667777777655   3444444  6677777777777655444  24677777777777776544 5555667777777


Q ss_pred             EEccCCcCcccCchhhhhCCCCCcEEEccCC-cccc-cCchhhhCCCCCCEEecccc-ccccccchhHhhcCC-CCCEEE
Q 046382          147 LDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN-AFNG-SIPSSFADMKMLERLDISDN-QLTGEIPERMATGCF-SLKILA  222 (691)
Q Consensus       147 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n-~i~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~-~L~~L~  222 (691)
                      |++++|.+++..+..+.. +++|++|++++| .+++ .++..+..+++|++|++++| .+++......+..++ +|++|+
T Consensus       123 L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            777777777555555554 677777777777 4554 24555677777777777777 666432223345677 777777


Q ss_pred             cccc--cCC-ccCcccccCCCCCCEEEccCCc-CcccCCccccCCCCCCEEEccCCc-CCCcchhhhhcCCCCCEEecCC
Q 046382          223 LSNN--SLQ-GHIFSKKFNLTNLMRLQLDGNK-FIGEIPESLSKCYLLGGLYLSDNH-LSGEIPRWLGNLSALEGIRMPN  297 (691)
Q Consensus       223 l~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~  297 (691)
                      +++|  .++ +..+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            7777  344 2334445567777777777777 555556667777777777777774 3222223566677777777777


Q ss_pred             CccCCCcchhhcCCCCCCEEEccCCcCcccCCCCC
Q 046382          298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF  332 (691)
Q Consensus       298 n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  332 (691)
                      | +.......+.  ..++.|++++|.+++..+..+
T Consensus       282 ~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          282 I-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             S-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred             c-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence            7 4432222222  124455567777776666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=4.8e-21  Score=193.93  Aligned_cols=202  Identities=18%  Similarity=0.184  Sum_probs=128.4

Q ss_pred             CccCEEEccCCcCccc----CchhhhhCCCCCcEEEccCCcccccCchhh--hCCCCCCEEeccccccccccc---hhHh
Q 046382          142 QNLATLDVSNNFFHGH----IPVEIGTYLPGLMDLNLSRNAFNGSIPSSF--ADMKMLERLDISDNQLTGEIP---ERMA  212 (691)
Q Consensus       142 ~~L~~L~Ls~n~i~~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~  212 (691)
                      ..++.+.+.++.++..    +.....  +++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+   ...+
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLA--YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHH--HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcc--cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3466777777665421    111111  3578899999888888888777  888889999999988875433   2222


Q ss_pred             hcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCccc--C--CccccCCCCCCEEEccCCcCCCcchh----hh
Q 046382          213 TGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGE--I--PESLSKCYLLGGLYLSDNHLSGEIPR----WL  284 (691)
Q Consensus       213 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~l  284 (691)
                      ..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .  +..+..+++|++|++++|.++. ++.    .+
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~  220 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALA  220 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHH
Confidence            4678888888888888877777777888888888888876542  1  2233566777777777777753 222    24


Q ss_pred             hcCCCCCEEecCCCccCCCcchhhcCC---CCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccc
Q 046382          285 GNLSALEGIRMPNNNLEGPIPIEFCQL---SALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIE  348 (691)
Q Consensus       285 ~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~  348 (691)
                      ..+++|++|++++|.+.+..|..+..+   ++|++|++++|.+... |..+ +++|++|++++|+++
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~-~~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGL-PAKLRVLDLSSNRLN  285 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCC-CSCCSCEECCSCCCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhh-cCCCCEEECCCCcCC
Confidence            566777777777777766555555444   4566666666655522 2221 134444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6e-21  Score=185.48  Aligned_cols=178  Identities=17%  Similarity=0.204  Sum_probs=80.2

Q ss_pred             CCCEEEccCCcccccCCcCccCCCccCEEEccCCc-CcccCchhhhhCCCCCcEEEccC-CcccccCchhhhCCCCCCEE
Q 046382          119 NLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF-FHGHIPVEIGTYLPGLMDLNLSR-NAFNGSIPSSFADMKMLERL  196 (691)
Q Consensus       119 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L  196 (691)
                      +|++|++++|++.+..+..+..+++|++|++++|+ ++ .++...+..+++|++|++++ |.+++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            44444444444444444444444445555555443 43 33333333344555555544 44444444444455555555


Q ss_pred             eccccccccccchhHhhcCCCCC---EEEcccc-cCCccCcccccCCCCCC-EEEccCCcCcccCCccccCCCCCCEEEc
Q 046382          197 DISDNQLTGEIPERMATGCFSLK---ILALSNN-SLQGHIFSKKFNLTNLM-RLQLDGNKFIGEIPESLSKCYLLGGLYL  271 (691)
Q Consensus       197 ~L~~n~l~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l  271 (691)
                      ++++|.++ .+|.  +..+++|+   .|++++| .+++..+..+..+++|+ .|++++|+++...+..+.. ++|+.|++
T Consensus       111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            55555544 3443  23344444   4444444 44444333444444555 5555554444222222222 44444555


Q ss_pred             cCCc-CCCcchhhhhcC-CCCCEEecCCCccC
Q 046382          272 SDNH-LSGEIPRWLGNL-SALEGIRMPNNNLE  301 (691)
Q Consensus       272 ~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~  301 (691)
                      ++|+ +++..+..+..+ ++|+.|++++|.++
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            4442 443333344444 44455555544444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=2.6e-20  Score=187.94  Aligned_cols=192  Identities=23%  Similarity=0.311  Sum_probs=101.6

Q ss_pred             cCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCE
Q 046382          116 NNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLER  195 (691)
Q Consensus       116 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  195 (691)
                      .+++|++|++++|.+... + .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++.  ..+..+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            445555555555555332 2 3455555555555555555 3333  22355555555555555532  24555556666


Q ss_pred             EeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCc
Q 046382          196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH  275 (691)
Q Consensus       196 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  275 (691)
                      |++++|.++ .++.  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       112 L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          112 LDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            666666555 3332  3445555555555555554322  4455556666666655553222  5555566666666666


Q ss_pred             CCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382          276 LSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF  325 (691)
Q Consensus       276 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  325 (691)
                      +++..+  +..+++|++|++++|.+.+..  .+..+++|+.|++++|++.
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            554322  555666666666666665433  2555666666666666554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.5e-19  Score=186.24  Aligned_cols=242  Identities=21%  Similarity=0.179  Sum_probs=170.0

Q ss_pred             CEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCE-EEc
Q 046382          145 ATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKI-LAL  223 (691)
Q Consensus       145 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~l  223 (691)
                      ++++.++++++ .+|..+.   +++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|...|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            57888888888 8887663   578889999998886666678888888888888888865677777777777665 455


Q ss_pred             ccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCC
Q 046382          224 SNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP  303 (691)
Q Consensus       224 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  303 (691)
                      +.|+++...+..+..+++|++|++++|++....+..+....++..+++.++                       +.+...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            567777666666777777777777777766444433333334444444332                       233322


Q ss_pred             cchhhcCC-CCCCEEEccCCcCcccCCCCCCCCcccEEEccC-CccccccccccCCCCCccEEeccCCCCCCCcchhhcC
Q 046382          304 IPIEFCQL-SALKILDLSNNSIFGTLPSCFSPAHIEQVHLSK-NKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDR  381 (691)
Q Consensus       304 ~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~  381 (691)
                      .+..|..+ ..++.|++++|.+....+..+...+++++++.+ |.++.+.+..|..+++|+.|++++|+++...+..   
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence            23334444 357788888888887777777778899999874 6777777778899999999999999998544433   


Q ss_pred             CCCccEEecccCcCcccCCcCCCCCCCCCEEEccCC
Q 046382          382 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN  417 (691)
Q Consensus       382 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  417 (691)
                      +.+|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus       222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4455666655554333555 4788999999998754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.7e-19  Score=185.78  Aligned_cols=200  Identities=17%  Similarity=0.144  Sum_probs=128.1

Q ss_pred             CEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcE-EEc
Q 046382           96 KNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMD-LNL  174 (691)
Q Consensus        96 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~-L~L  174 (691)
                      ++++.++++++ .+|..+   .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+|...+..++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56777777776 677654   3678888888888877766778888888888888888765677777666777665 555


Q ss_pred             cCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEccc-ccCCccCcccccCCC-CCCEEEccCCcC
Q 046382          175 SRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN-NSLQGHIFSKKFNLT-NLMRLQLDGNKF  252 (691)
Q Consensus       175 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l  252 (691)
                      ++|+++...|..|..+++|++|++++|+++ .++...+....++..+++.+ +.+.......+..+. .++.|++++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            667888777777888888888888888887 55554444455666666654 455544444444443 455666666666


Q ss_pred             cccCCccccCCCCCCEEEccC-CcCCCcchhhhhcCCCCCEEecCCCccC
Q 046382          253 IGEIPESLSKCYLLGGLYLSD-NHLSGEIPRWLGNLSALEGIRMPNNNLE  301 (691)
Q Consensus       253 ~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~  301 (691)
                      +...+..+ ...+|+.+++.+ |.++...++.|..+++|++|++++|+++
T Consensus       167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            53333322 334555555543 3444333334455555555555555555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=8.2e-20  Score=174.45  Aligned_cols=114  Identities=22%  Similarity=0.278  Sum_probs=56.0

Q ss_pred             ccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEcc
Q 046382          490 SMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  569 (691)
Q Consensus       490 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  569 (691)
                      +|++|+|++|.+++..|..|..+++|++|+|++|+|+...+..|.++++|+.|+|++|++++..|..|..+++|+.|+++
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            33333333444333344444445555555555555554434444455555555555555554444455555555555555


Q ss_pred             CCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCC
Q 046382          570 YNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLS  603 (691)
Q Consensus       570 ~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~  603 (691)
                      +|++++..+. ...+..++.+++++|||.|+|.+.
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~  171 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK  171 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence            5555544443 233444555555666666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=4.3e-20  Score=191.03  Aligned_cols=115  Identities=20%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCccc---ccCCCCC
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL---IVLNTLE  564 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~  564 (691)
                      +++|++|+|++|++++..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|++++..+..+   ..+++|+
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred             CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence            4455666666666655555556666666666666666665556666666666666666666664433333   4466666


Q ss_pred             eEEccCCcccccCCC-CCCCCC--cCcCcccCCCCCCCCCC
Q 046382          565 VFKVAYNNLSGKIPD-RAQFST--FEEDSYEGNPFLCGKPL  602 (691)
Q Consensus       565 ~L~l~~N~l~~~~p~-~~~~~~--~~~~~~~~Np~~c~~~l  602 (691)
                      .|++++|+|++..+. ...+..  ++.+++++|||.|+|.+
T Consensus       167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             EEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence            666666666643322 111222  25567778888888754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=4.3e-19  Score=169.46  Aligned_cols=153  Identities=22%  Similarity=0.242  Sum_probs=86.2

Q ss_pred             cEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCC-cCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCccc
Q 046382          362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP-VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAV  440 (691)
Q Consensus       362 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~  440 (691)
                      +.+++++|.++ .+|..+  .+.+++|++++|++++..+ ..|..+++|+.|++++|.+++..+..+..           
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            46677777666 344433  2345666666666665533 33556666666666666665333322221           


Q ss_pred             CCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC
Q 046382          441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL  520 (691)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  520 (691)
                                                                     +++|++|+|++|.+++..+..|..+++|++|+|
T Consensus        80 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           80 -----------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence                                                           445556666666665555555555666666666


Q ss_pred             CCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccc
Q 046382          521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG  575 (691)
Q Consensus       521 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  575 (691)
                      ++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            6666655555555556666666666666655555555555555555555555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=4.1e-19  Score=168.45  Aligned_cols=161  Identities=25%  Similarity=0.214  Sum_probs=76.7

Q ss_pred             CCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEe
Q 046382          118 TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLD  197 (691)
Q Consensus       118 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  197 (691)
                      ++|++|++++|++.+..+..+..+++|++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            34555555555554444444445555555555555554 34443333345555555555555544344445555555555


Q ss_pred             ccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCC
Q 046382          198 ISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS  277 (691)
Q Consensus       198 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  277 (691)
                      +++|.++ .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+       .++.|+.|+++.|.++
T Consensus       107 L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred             cCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence            5555554 3443333444555555555555544433334445555555555554321       2334444555555555


Q ss_pred             CcchhhhhcC
Q 046382          278 GEIPRWLGNL  287 (691)
Q Consensus       278 ~~~~~~l~~l  287 (691)
                      +.+|.+++.+
T Consensus       179 g~ip~~~~~l  188 (208)
T 2o6s_A          179 GVVRNSAGSV  188 (208)
T ss_dssp             TTBBCTTSSB
T ss_pred             ceeeccCccc
Confidence            4444444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=5.5e-19  Score=167.58  Aligned_cols=156  Identities=21%  Similarity=0.221  Sum_probs=105.0

Q ss_pred             CCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCc
Q 046382          359 PYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHE  438 (691)
Q Consensus       359 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~  438 (691)
                      ++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..         
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------   98 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK---------   98 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC---------
Confidence            35666666666666544445566666666666666666555555666666667777666665332222211         


Q ss_pred             ccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeE
Q 046382          439 AVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHAL  518 (691)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  518 (691)
                                                                       +++|++|++++|.+++..+..+..+++|++|
T Consensus        99 -------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A           99 -------------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             -------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             -------------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence                                                             4567777777777775556667778888888


Q ss_pred             eCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC
Q 046382          519 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       519 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  579 (691)
                      ++++|++++..+..|..+++|+.|++++|.+.+       .+++|+.|++++|+++|.+|.
T Consensus       130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBC
T ss_pred             ECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeec
Confidence            888888886666667888888888888887764       345678888888888888775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=7.3e-19  Score=190.19  Aligned_cols=114  Identities=20%  Similarity=0.398  Sum_probs=57.5

Q ss_pred             CCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccC
Q 046382          289 ALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSY  368 (691)
Q Consensus       289 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~  368 (691)
                      +++.|++++|.+++ +|..+  .++|++|++++|.+.. +|  ..+++|+.|++++|.++++ |. +..  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP--ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCC
Confidence            56666666666654 33323  2456666666665552 22  2245555555555555542 22 322  555555555


Q ss_pred             CCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382          369 NRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS  420 (691)
Q Consensus       369 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  420 (691)
                      |.+++ +|.   .+++|++|++++|++++ +|.   .+++|+.|++++|+++
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence            55553 333   34555555555555553 232   3445555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.1e-18  Score=166.60  Aligned_cols=153  Identities=24%  Similarity=0.275  Sum_probs=109.0

Q ss_pred             cEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccC
Q 046382          362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVA  441 (691)
Q Consensus       362 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~  441 (691)
                      +.++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|+.|++++|.+++..|..+..            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            45666666665 3444332  46777777777776666666777777777777777776544444332            


Q ss_pred             CCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCC
Q 046382          442 PTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLS  521 (691)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  521 (691)
                                                                    +++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus        79 ----------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           79 ----------------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             ----------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ----------------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence                                                          4667777777777775555567778888888888


Q ss_pred             CCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccc
Q 046382          522 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG  575 (691)
Q Consensus       522 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  575 (691)
                      +|+|++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            888887777888888888888888888887777778888888888888888865

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.4e-18  Score=165.97  Aligned_cols=116  Identities=22%  Similarity=0.293  Sum_probs=87.0

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      +++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            56777777777777766666777777777778877777777777777777777888877777777777777777777788


Q ss_pred             ccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCC
Q 046382          568 VAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLS  603 (691)
Q Consensus       568 l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~  603 (691)
                      +++|++++..|. ...+..++.+++++|||.|+|++.
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            877777777664 445667777777777777777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=2.4e-18  Score=165.48  Aligned_cols=154  Identities=23%  Similarity=0.217  Sum_probs=107.4

Q ss_pred             ccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCccc
Q 046382          361 LVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAV  440 (691)
Q Consensus       361 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~  440 (691)
                      .+.++.+++.++ .+|..+  .++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..           
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence            466888888777 455443  367888888888888777777888888888888888775322222221           


Q ss_pred             CCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC
Q 046382          441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL  520 (691)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  520 (691)
                                                                     +++|+.|+|++|++++..+..|..+++|++|+|
T Consensus        87 -----------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           87 -----------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             -----------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence                                                           566777777777777655666677777777777


Q ss_pred             CCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCccccc
Q 046382          521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGK  576 (691)
Q Consensus       521 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  576 (691)
                      ++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            777777 5566677777777777777777766666677777777777777666643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=1.3e-18  Score=188.18  Aligned_cols=134  Identities=23%  Similarity=0.331  Sum_probs=69.9

Q ss_pred             CCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccC
Q 046382          265 LLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSK  344 (691)
Q Consensus       265 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~  344 (691)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|   ..+++|++|++++|.+.+ ++. +. .+|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence            55566666665554 33322  245666666666555 233   234556666666665554 233 21 2566666666


Q ss_pred             CccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382          345 NKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS  420 (691)
Q Consensus       345 n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  420 (691)
                      |.++++..    .+++|+.|++++|.+++ +|.   .+++|++|++++|++++ +|. +.  ++|+.|++++|.++
T Consensus       130 N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          130 NQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            65555322    35556666666666553 333   34556666666666554 333 33  55555666555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.5e-18  Score=179.43  Aligned_cols=176  Identities=22%  Similarity=0.203  Sum_probs=106.7

Q ss_pred             CEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccC-CCCCccEEeccCCCCCCCcchhhcCCCCccEEecccC
Q 046382          315 KILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH-DSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHN  393 (691)
Q Consensus       315 ~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n  393 (691)
                      +.++++++.+...+...  ++.++.|++++|.+++..+..+. .+++|+.|++++|++++..+..|..+++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            56777777766433222  34567777777777766666665 6677777777777776555556666777777777777


Q ss_pred             cCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEE
Q 046382          394 YIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQ  473 (691)
Q Consensus       394 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (691)
                      ++++..+..|..+++|+.|++++|++++..|..+..                                            
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~--------------------------------------------  134 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED--------------------------------------------  134 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------------------------------------------
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC--------------------------------------------
Confidence            776665556666667777777766665433333222                                            


Q ss_pred             EEecCccceeccccccccceEEcCCCeeeeccchhh---hcccCCCeEeCCCCcCCcccchhhcCCCc--CCEEeCCCcc
Q 046382          474 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI---GYLSGIHALNLSHNNLTGTIPTTFSNLKQ--IESLDLSYNL  548 (691)
Q Consensus       474 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~  548 (691)
                                    +++|+.|+|++|.+++..+..|   ..+++|+.|+|++|+|++..+..+..++.  ++.|+|++|+
T Consensus       135 --------------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          135 --------------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             --------------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             --------------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence                          4566666666666664333333   44666666666666666555555555555  3566666666


Q ss_pred             cc
Q 046382          549 LH  550 (691)
Q Consensus       549 l~  550 (691)
                      +.
T Consensus       201 ~~  202 (361)
T 2xot_A          201 LE  202 (361)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=4.9e-18  Score=169.67  Aligned_cols=82  Identities=24%  Similarity=0.387  Sum_probs=50.5

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      +++|+.|++++|.+++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++. | .+..+++|+.|+
T Consensus       133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~  206 (291)
T 1h6t_A          133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLE  206 (291)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEE
T ss_pred             CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEE
Confidence            45566666666666533  355666666666666666664443  66666666666666666643 2 366666677777


Q ss_pred             ccCCcccc
Q 046382          568 VAYNNLSG  575 (691)
Q Consensus       568 l~~N~l~~  575 (691)
                      +++|+++.
T Consensus       207 l~~n~i~~  214 (291)
T 1h6t_A          207 LFSQECLN  214 (291)
T ss_dssp             EEEEEEEC
T ss_pred             CcCCcccC
Confidence            77666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=7.5e-18  Score=161.97  Aligned_cols=81  Identities=21%  Similarity=0.189  Sum_probs=38.7

Q ss_pred             ccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccC
Q 046382          337 IEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH  416 (691)
Q Consensus       337 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  416 (691)
                      .+.++.+++.++.++...   .++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            344455544444332211   14455555555555544444455555555555555555443334445555555555555


Q ss_pred             CCCC
Q 046382          417 NNLS  420 (691)
Q Consensus       417 n~l~  420 (691)
                      |+++
T Consensus        98 N~l~  101 (229)
T 3e6j_A           98 NQLT  101 (229)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            5554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.4e-17  Score=166.41  Aligned_cols=171  Identities=25%  Similarity=0.331  Sum_probs=80.0

Q ss_pred             hcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCC
Q 046382          115 ENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE  194 (691)
Q Consensus       115 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  194 (691)
                      ..+++|++|++++|.+.+.  ..+..+++|++|++++|+++ .++.  ...+++|++|++++|.+++ + ..+..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence            3455566666666655433  12455555555555555555 2332  2224555555555555542 1 2244444555


Q ss_pred             EEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCC
Q 046382          195 RLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN  274 (691)
Q Consensus       195 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  274 (691)
                      +|++++|+++ .+                          ..+..+++|+.|++++|++.+.  ..+..+++|+.|++++|
T Consensus       116 ~L~L~~n~i~-~~--------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          116 SLSLEHNGIS-DI--------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             EEECTTSCCC-CC--------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             EEECCCCcCC-CC--------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence            5555554444 22                          2233344444444444444322  23444444555555555


Q ss_pred             cCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382          275 HLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF  325 (691)
Q Consensus       275 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  325 (691)
                      .+++..+  +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus       167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          167 QISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             ccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            5443322  44455555555555555432 2 2445555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=9.1e-18  Score=183.81  Aligned_cols=58  Identities=22%  Similarity=0.395  Sum_probs=26.8

Q ss_pred             cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382          489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  550 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (691)
                      ++|+.|+|++|.+++..|  +..+++|+.|+|++|+|++.  ..+..+++|+.|+|++|+++
T Consensus       153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence            344444444444443333  44444555555555554432  22444455555555555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.3e-17  Score=156.34  Aligned_cols=154  Identities=17%  Similarity=0.248  Sum_probs=104.7

Q ss_pred             CCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCC
Q 046382          356 HDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGG  435 (691)
Q Consensus       356 ~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~  435 (691)
                      ..+++|+.|++++|.++ .++ .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++..|..+..      
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            34556667777777666 334 46666777777777775542  235666777777777777776433432221      


Q ss_pred             CCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCC
Q 046382          436 HHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGI  515 (691)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  515 (691)
                                                                          +++|++|++++|.+++..|..+..+++|
T Consensus       111 ----------------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A          111 ----------------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             ----------------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             ----------------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence                                                                5677777777777776677778888888


Q ss_pred             CeEeCCCCc-CCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccc
Q 046382          516 HALNLSHNN-LTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG  575 (691)
Q Consensus       516 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  575 (691)
                      ++|++++|. ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.+
T Consensus       139 ~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          139 NSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             CEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            888888887 55 444 578888888888888888753 3 67788888888888888753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=8.2e-17  Score=176.27  Aligned_cols=190  Identities=23%  Similarity=0.334  Sum_probs=121.7

Q ss_pred             CCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEec
Q 046382          119 NLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI  198 (691)
Q Consensus       119 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  198 (691)
                      .+..+.+..+.+.+..+  +..+++|+.|++++|.+. .++. +. .+++|++|+|++|.+.+..+  +..+++|+.|+|
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT-GG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH-Hc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            34445555555544332  456677777777777776 4542 33 36777777777777775433  677777777777


Q ss_pred             cccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCC
Q 046382          199 SDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG  278 (691)
Q Consensus       199 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  278 (691)
                      ++|.+. .++.  +..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|++++|.+.+
T Consensus        95 s~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           95 DENKIK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CSSCCC-CCTT--STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             cCCCCC-CChh--hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            777776 4442  35577777777777777653  3466677777777777776644  456666777777777777765


Q ss_pred             cchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcc
Q 046382          279 EIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFG  326 (691)
Q Consensus       279 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~  326 (691)
                      ..|  +..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|++.+
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            544  66667777777777766643  246666667777777666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=1.1e-17  Score=170.55  Aligned_cols=285  Identities=12%  Similarity=0.028  Sum_probs=144.9

Q ss_pred             CCCCCEEEccCCCCcccCchHHhhc-CCCCCEEEccCCccc--ccCCcCccCCCccCEEEccCCcCcccCchhhhhC---
Q 046382           92 QHDLKNADLSHLNLSGQFPNWLLEN-NTNLVMLLLANNSLF--GSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY---  165 (691)
Q Consensus        92 l~~L~~L~L~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~---  165 (691)
                      ++++++|+++++ +...-...+ .. +++|++|||++|++.  .....   .++.++.+.+..|    .+|...|..   
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l-~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~   94 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHL-RDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVN   94 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHH-HHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEET
T ss_pred             hCceeEEEEecc-ccHHHHHHH-HHhhccCeEEecCcceeEEecCccc---ccccccccccccc----ccCHHHhccccc
Confidence            345666666653 111111122 23 666777777777664  11111   1122344444443    334444444   


Q ss_pred             -----CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCC
Q 046382          166 -----LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLT  240 (691)
Q Consensus       166 -----l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  240 (691)
                           +++|++|++.+ .++.+.+.+|.++++|+++++++|.+. .++...|.++.++..+....+...           
T Consensus        95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~-----------  161 (329)
T 3sb4_A           95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAY-----------  161 (329)
T ss_dssp             TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHH-----------
T ss_pred             ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhh-----------
Confidence                 55566666655 555455555555555666666555555 455555544444444433321110           


Q ss_pred             CCCEEEccCCcCcccCCccccCCCCCC-EEEccCCcCCCcchhhhh----cCCCCCEEecCCCccCCCcchhh-cCCCCC
Q 046382          241 NLMRLQLDGNKFIGEIPESLSKCYLLG-GLYLSDNHLSGEIPRWLG----NLSALEGIRMPNNNLEGPIPIEF-CQLSAL  314 (691)
Q Consensus       241 ~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~----~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L  314 (691)
                               ..........|..+..|+ .+.+....   .++..+.    ...+++.+.+.++-.. .....+ ..+++|
T Consensus       162 ---------~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L  228 (329)
T 3sb4_A          162 ---------RFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNL  228 (329)
T ss_dssp             ---------HTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTC
T ss_pred             ---------hccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCC
Confidence                     000111122333344443 23322211   1111111    1234444444433111 111111 125666


Q ss_pred             CEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCcc-EEeccCCCCCCCcchhhcCCCCccEEeccc
Q 046382          315 KILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLV-TLDLSYNRLHGSIPNRIDRLPQLNYLLLAH  392 (691)
Q Consensus       315 ~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~-~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~  392 (691)
                      +.+++++|.+.......| .+.+|+++++.+| ++.+...+|.+|++|+ .+++.+ .++.+.+..|.+|++|+.+++++
T Consensus       229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG  306 (329)
T ss_dssp             CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred             eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence            666666666665555555 5666777777665 6666667777777777 777777 56655566777777888888777


Q ss_pred             CcCcccCCcCCCCCCCCCEEE
Q 046382          393 NYIKGEIPVQLCQLKEVRLID  413 (691)
Q Consensus       393 n~i~~~~~~~~~~l~~L~~L~  413 (691)
                      |+++.+.+.+|.++++|+.++
T Consensus       307 n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          307 DKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             SCCCEECTTTTCTTCCCCEEE
T ss_pred             CccCccchhhhcCCcchhhhc
Confidence            777767777777777777765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.2e-17  Score=162.20  Aligned_cols=170  Identities=18%  Similarity=0.234  Sum_probs=120.6

Q ss_pred             CCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEE
Q 046382          334 PAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID  413 (691)
Q Consensus       334 ~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  413 (691)
                      +.+++.++++++.+++..  .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|+.|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344555666666666543  35567777778887777773 33 56777788888888888775443  77778888888


Q ss_pred             ccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccce
Q 046382          414 LSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSG  493 (691)
Q Consensus       414 l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  493 (691)
                      +++|++++ +|..                                                           . .++|+.
T Consensus        92 L~~N~l~~-l~~~-----------------------------------------------------------~-~~~L~~  110 (263)
T 1xeu_A           92 VNRNRLKN-LNGI-----------------------------------------------------------P-SACLSR  110 (263)
T ss_dssp             CCSSCCSC-CTTC-----------------------------------------------------------C-CSSCCE
T ss_pred             CCCCccCC-cCcc-----------------------------------------------------------c-cCcccE
Confidence            88887763 2210                                                           0 146778


Q ss_pred             EEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcc
Q 046382          494 IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL  573 (691)
Q Consensus       494 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  573 (691)
                      |++++|++++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++
T Consensus       111 L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          111 LFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             EECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             EEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            8888888874 33 577888888888888888754 3 577888888888888888765  5677888888888888888


Q ss_pred             ccc
Q 046382          574 SGK  576 (691)
Q Consensus       574 ~~~  576 (691)
                      ++.
T Consensus       185 ~~~  187 (263)
T 1xeu_A          185 VNE  187 (263)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=1.8e-16  Score=148.61  Aligned_cols=153  Identities=19%  Similarity=0.202  Sum_probs=86.1

Q ss_pred             cCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCC
Q 046382           90 YHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGL  169 (691)
Q Consensus        90 ~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L  169 (691)
                      ..+++|++|++++|.+. .+|.  +..+++|++|++++|.+...  ..+..+++|++|++++|++++..+..+.. +++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTC
T ss_pred             hhcCCccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcC-CCCC
Confidence            34445666666666655 4442  35566666666666644222  24555666666666666665434444433 5666


Q ss_pred             cEEEccCCcccccCchhhhCCCCCCEEeccccc-cccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEcc
Q 046382          170 MDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ-LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLD  248 (691)
Q Consensus       170 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  248 (691)
                      ++|++++|.+++..+..+..+++|++|++++|. ++ .++  .+..+++|+.|++++|.+++..  .+..+++|+.|+++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAF  189 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEEC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEee
Confidence            666666666665555666666666666666665 44 444  2345666666666666665432  45566666666666


Q ss_pred             CCcCc
Q 046382          249 GNKFI  253 (691)
Q Consensus       249 ~n~l~  253 (691)
                      +|++.
T Consensus       190 ~N~i~  194 (197)
T 4ezg_A          190 SQTIG  194 (197)
T ss_dssp             BC---
T ss_pred             CcccC
Confidence            66654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=4.4e-17  Score=151.81  Aligned_cols=116  Identities=22%  Similarity=0.326  Sum_probs=106.6

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      .+++++|++++|.++ .+|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|++++..|..|..+++|+.|+
T Consensus        30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            467999999999998 7888999999999999999999988889999999999999999999999899999999999999


Q ss_pred             ccCCcccccCCC-CCCCCCcCcCcccCCCCCCCCCCCC
Q 046382          568 VAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKPLSK  604 (691)
Q Consensus       568 l~~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~~  604 (691)
                      +++|++++..+. ...+..++.+++++|||.|+|.+.+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~  146 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW  146 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence            999999987665 5567889999999999999998653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=2.1e-19  Score=195.59  Aligned_cols=79  Identities=18%  Similarity=0.172  Sum_probs=54.6

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCccc-chhhcCCCcCCEEeCCCccccccCCc---ccccCCCC
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIPP---QLIVLNTL  563 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L  563 (691)
                      +++|+.|+|++|.+++ +| .++.+++|++|+|++|+|++.. |..+..+++|+.|+|++|++++..|.   .+..+++|
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L  562 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  562 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence            4566666666666664 45 6777777888888888777665 77777788888888888877765442   23346777


Q ss_pred             CeEEc
Q 046382          564 EVFKV  568 (691)
Q Consensus       564 ~~L~l  568 (691)
                      +.|++
T Consensus       563 ~~L~l  567 (567)
T 1dce_A          563 SSILT  567 (567)
T ss_dssp             SEEEC
T ss_pred             CccCC
Confidence            77754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=3.4e-17  Score=152.69  Aligned_cols=89  Identities=27%  Similarity=0.372  Sum_probs=59.5

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      +++|++|+|++|.+++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            45566666666666655566666666677777777777666666666667777777777777666666666667777777


Q ss_pred             ccCCccccc
Q 046382          568 VAYNNLSGK  576 (691)
Q Consensus       568 l~~N~l~~~  576 (691)
                      +++|++++.
T Consensus       133 L~~N~l~c~  141 (192)
T 1w8a_A          133 LASNPFNCN  141 (192)
T ss_dssp             CTTCCBCCS
T ss_pred             eCCCCccCc
Confidence            776666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=1.3e-16  Score=162.72  Aligned_cols=210  Identities=13%  Similarity=0.031  Sum_probs=141.3

Q ss_pred             CCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCc----CCCcchhhhhcCCCC
Q 046382          215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNH----LSGEIPRWLGNLSAL  290 (691)
Q Consensus       215 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~----~~~~~~~~l~~l~~L  290 (691)
                      +++|+.+++.+ .++.....+|.++++|+.+++.+|.+....+.+|..+.++..+....+.    ........+..+..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            55555555555 5555555555556666666666665555555556665555555544321    111223345566677


Q ss_pred             C-EEecCCCccCCCcchhh----cCCCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEE
Q 046382          291 E-GIRMPNNNLEGPIPIEF----CQLSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTL  364 (691)
Q Consensus       291 ~-~L~l~~n~~~~~~~~~~----~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L  364 (691)
                      + .+.+....   .++..+    ....+++.+.+.++-......... .+++|+.+++++|.++.+...+|.+|++|+.+
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            6 55554432   222222    134567778777653221111111 37899999999999999999999999999999


Q ss_pred             eccCCCCCCCcchhhcCCCCcc-EEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhc
Q 046382          365 DLSYNRLHGSIPNRIDRLPQLN-YLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNT  430 (691)
Q Consensus       365 ~ls~n~i~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  430 (691)
                      ++.+| ++.+.+..|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++...+.+|.++
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence            99998 7767778899999999 999998 7887888999999999999999999986656666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=8.8e-17  Score=157.87  Aligned_cols=166  Identities=21%  Similarity=0.216  Sum_probs=102.1

Q ss_pred             cccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEc
Q 046382           70 QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV  149 (691)
Q Consensus        70 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  149 (691)
                      +++.++++++.+++..  .+..+++|++|++++|.++ .++.  +..+++|++|++++|++.+..+  +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cchH--HhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            5555666666665432  3556667777777777765 4552  4667777777777777655443  666777777777


Q ss_pred             cCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCC
Q 046382          150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ  229 (691)
Q Consensus       150 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  229 (691)
                      ++|+++ .+|....   ++|++|++++|.+++.  ..+..+++|++|++++|+++ .++  .+..+++|+.|++++|.++
T Consensus        93 ~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           93 NRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCC
T ss_pred             CCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCc
Confidence            777766 4443221   5677777777766642  24666667777777777666 343  2345666666666666666


Q ss_pred             ccCcccccCCCCCCEEEccCCcCc
Q 046382          230 GHIFSKKFNLTNLMRLQLDGNKFI  253 (691)
Q Consensus       230 ~~~~~~~~~l~~L~~L~L~~n~l~  253 (691)
                      +.  ..+..+++|+.|++++|.+.
T Consensus       164 ~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          164 NT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             ch--HHhccCCCCCEEeCCCCccc
Confidence            54  44555666666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.1e-16  Score=149.21  Aligned_cols=132  Identities=23%  Similarity=0.317  Sum_probs=93.7

Q ss_pred             cEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCc-CCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCccc
Q 046382          362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPV-QLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAV  440 (691)
Q Consensus       362 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~  440 (691)
                      +.+++++|.++ .+|..+.  .++++|++++|++++..+. .+..+++|++|++++|++++..|..+..           
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------   76 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence            56666666665 4444332  2677777777777655443 3667777777777777776555554432           


Q ss_pred             CCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC
Q 046382          441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL  520 (691)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  520 (691)
                                                                     +++|++|+|++|++++..+..|..+++|++|+|
T Consensus        77 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           77 -----------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             -----------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             -----------------------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence                                                           566777777777777777777888888888888


Q ss_pred             CCCcCCcccchhhcCCCcCCEEeCCCccccccCC
Q 046382          521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP  554 (691)
Q Consensus       521 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  554 (691)
                      ++|++++..|..|..+++|++|+|++|++++..+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            8888888888888888888888888888876544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.4e-17  Score=181.22  Aligned_cols=183  Identities=19%  Similarity=0.200  Sum_probs=116.4

Q ss_pred             cCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCc-------------ccccCchhhhCCCCCCEEe-ccccccc
Q 046382          139 HSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNA-------------FNGSIPSSFADMKMLERLD-ISDNQLT  204 (691)
Q Consensus       139 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~  204 (691)
                      ..+++|+.|+|++|+++ .+|..+.. +++|++|++++|.             ..+..|..++.+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            34566666666666665 66666654 5566666665443             3456667777788888887 5666543


Q ss_pred             cccchhHhh-------cCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCC
Q 046382          205 GEIPERMAT-------GCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS  277 (691)
Q Consensus       205 ~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  277 (691)
                       .++...+.       ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence             22221100       012467777777777653 33 666777777777777776 55666777777777777777776


Q ss_pred             CcchhhhhcCCCCCEEecCCCccCCCc-chhhcCCCCCCEEEccCCcCcccCC
Q 046382          278 GEIPRWLGNLSALEGIRMPNNNLEGPI-PIEFCQLSALKILDLSNNSIFGTLP  329 (691)
Q Consensus       278 ~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~  329 (691)
                      + +| .++.+++|+.|++++|.+++.. |..+..+++|+.|++++|.+.+.++
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            4 44 5667777777777777776654 6667777777777777777665544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1.1e-15  Score=139.31  Aligned_cols=88  Identities=22%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCccc-chhhcCCCcCCEEeCCCccccccCC---cccccCCCC
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLHGKIP---PQLIVLNTL  563 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L  563 (691)
                      +++|++|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|
T Consensus        70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            344555555555555445555555666666666666666432 2556666666666666666664444   356666666


Q ss_pred             CeEEccCCcccc
Q 046382          564 EVFKVAYNNLSG  575 (691)
Q Consensus       564 ~~L~l~~N~l~~  575 (691)
                      +.|++++|.+..
T Consensus       150 ~~L~l~~n~~~~  161 (168)
T 2ell_A          150 TYLDGYDREDQE  161 (168)
T ss_dssp             CEETTEETTSCB
T ss_pred             cEecCCCCChhh
Confidence            777666666653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.63  E-value=1.4e-14  Score=150.75  Aligned_cols=264  Identities=10%  Similarity=0.122  Sum_probs=140.8

Q ss_pred             CCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEE
Q 046382          117 NTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL  196 (691)
Q Consensus       117 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  196 (691)
                      +..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++ .++...|.. .+|+.+.+.. .++.+...+|.++++|+.+
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            344555555432 333444444443 4555555444 33 444444443 2455555553 3444444555555555555


Q ss_pred             eccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcC
Q 046382          197 DISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL  276 (691)
Q Consensus       197 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  276 (691)
                      ++.+|.++ .++...|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.               
T Consensus       186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~---------------  246 (401)
T 4fdw_A          186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR---------------  246 (401)
T ss_dssp             ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT---------------
T ss_pred             ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccc---------------
Confidence            55555555 45554444 345555555422 43344444444455555554432 2222233333               


Q ss_pred             CCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc-----ccCCCCC-CCCcccEEEccCCccccc
Q 046382          277 SGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF-----GTLPSCF-SPAHIEQVHLSKNKIEGR  350 (691)
Q Consensus       277 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~-~~~~L~~L~l~~n~i~~~  350 (691)
                               + .+|+.+.+. +.+......+|..+++|+.+++.++.+.     ......| .+++|+.+.+. +.++.+
T Consensus       247 ---------~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I  314 (401)
T 4fdw_A          247 ---------E-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRIL  314 (401)
T ss_dssp             ---------T-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEE
T ss_pred             ---------c-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEE
Confidence                     3 344444442 2233233445555555555555554432     2333344 56667777766 346666


Q ss_pred             cccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCC-CCCEEEccCCCC
Q 046382          351 LESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK-EVRLIDLSHNNL  419 (691)
Q Consensus       351 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l  419 (691)
                      ...+|.+|++|+.+.+..+ ++......|.++ +|+.+++.+|.+.......|.+++ +++.|.+..+.+
T Consensus       315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            6677777888888888554 554555677777 888888888877766666777774 677787776554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=9.7e-16  Score=139.63  Aligned_cols=138  Identities=21%  Similarity=0.236  Sum_probs=118.4

Q ss_pred             CCCCccEEeccCCCCC-CCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCC
Q 046382          357 DSPYLVTLDLSYNRLH-GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGG  435 (691)
Q Consensus       357 ~~~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~  435 (691)
                      ..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..      
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------   93 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------   93 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence            4578999999999998 56777788999999999999999865  78899999999999999998767765543      


Q ss_pred             CCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeecc-chhhhcccC
Q 046382          436 HHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI-PTQIGYLSG  514 (691)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~  514 (691)
                                                                          +++|++|++++|.+++.. +..+..+++
T Consensus        94 ----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~  121 (168)
T 2ell_A           94 ----------------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLEC  121 (168)
T ss_dssp             ----------------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred             ----------------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCC
Confidence                                                                678999999999998543 278999999


Q ss_pred             CCeEeCCCCcCCcccc---hhhcCCCcCCEEeCCCccccccCCc
Q 046382          515 IHALNLSHNNLTGTIP---TTFSNLKQIESLDLSYNLLHGKIPP  555 (691)
Q Consensus       515 L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~  555 (691)
                      |++|++++|.+++..+   ..+..+++|+.|++++|.+. .+|+
T Consensus       122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999999999996655   58999999999999999987 3443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.2e-16  Score=179.58  Aligned_cols=131  Identities=24%  Similarity=0.314  Sum_probs=91.5

Q ss_pred             cCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCC
Q 046382          295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS  374 (691)
Q Consensus       295 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~  374 (691)
                      +..|.+. ..+..+..++.|+.|+|++|.+....+..+.+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .
T Consensus       208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~  284 (727)
T 4b8c_D          208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S  284 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred             cccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence            3334443 4556677777788888888877754445556777888888888777 45566788888888888888888 6


Q ss_pred             cchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhh
Q 046382          375 IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVN  429 (691)
Q Consensus       375 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  429 (691)
                      +|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..
T Consensus       285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            6888888888888888888887 56777888888888888888888777766544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.4e-15  Score=135.39  Aligned_cols=128  Identities=18%  Similarity=0.223  Sum_probs=88.4

Q ss_pred             CCccEEecccCcCc-ccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCC
Q 046382          383 PQLNYLLLAHNYIK-GEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSR  461 (691)
Q Consensus       383 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (691)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+.                                 
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~---------------------------------   61 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP---------------------------------   61 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC---------------------------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh---------------------------------
Confidence            56667777777666 45566666677777777777766532  1110                                 


Q ss_pred             CCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcc-cchhhcCCCcCC
Q 046382          462 SAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGT-IPTTFSNLKQIE  540 (691)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~  540 (691)
                                               .+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|+
T Consensus        62 -------------------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           62 -------------------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             -------------------------CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             -------------------------cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence                                     156677777777777765777777788888888888888753 346778888888


Q ss_pred             EEeCCCccccccCC---cccccCCCCCeEEccC
Q 046382          541 SLDLSYNLLHGKIP---PQLIVLNTLEVFKVAY  570 (691)
Q Consensus       541 ~L~Ls~N~l~~~~p---~~l~~l~~L~~L~l~~  570 (691)
                      +|++++|++++..+   ..+..+++|+.|++++
T Consensus       117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            88888888876655   4677788888887753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=4.2e-15  Score=138.30  Aligned_cols=88  Identities=25%  Similarity=0.241  Sum_probs=75.8

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      +++|+.|+|++|.+++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+++...+..|..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            56788888888888877777888899999999999999888888899999999999999999877777788899999999


Q ss_pred             ccCCcccc
Q 046382          568 VAYNNLSG  575 (691)
Q Consensus       568 l~~N~l~~  575 (691)
                      +++|++.+
T Consensus       133 L~~N~~~C  140 (193)
T 2wfh_A          133 IGANPLYC  140 (193)
T ss_dssp             CCSSCEEC
T ss_pred             eCCCCeec
Confidence            99999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=1.7e-14  Score=149.94  Aligned_cols=269  Identities=14%  Similarity=0.106  Sum_probs=178.7

Q ss_pred             CCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEc
Q 046382          240 TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDL  319 (691)
Q Consensus       240 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  319 (691)
                      ..++.+.+.++ ++.....+|..+ +|+.+.+..+ +......+|.++ +|+.+.+.+ .+......+|..+++|+.+++
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            34444444432 333334455553 4666666554 443444455553 577777765 444455567778888888888


Q ss_pred             cCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccC
Q 046382          320 SNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEI  399 (691)
Q Consensus       320 ~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~  399 (691)
                      .+|.+.......|.+.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++......|.+ .+|+.+.+ .+.++.+.
T Consensus       188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~  263 (401)
T 4fdw_A          188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIA  263 (401)
T ss_dssp             TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEEC
T ss_pred             CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEC
Confidence            88888777777777788888888744 77777788888889999988875 45455566766 68888888 45566677


Q ss_pred             CcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCc
Q 046382          400 PVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNM  479 (691)
Q Consensus       400 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (691)
                      ..+|.++++|+.+++.+|.+.......+..                                                  
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--------------------------------------------------  293 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHP--------------------------------------------------  293 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECT--------------------------------------------------
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECH--------------------------------------------------
Confidence            788999999999999887664100000000                                                  


Q ss_pred             cceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCccccc
Q 046382          480 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV  559 (691)
Q Consensus       480 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  559 (691)
                       ..|.  .+++|+.+++.+ .++......|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|..
T Consensus       294 -~aF~--~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~  367 (401)
T 4fdw_A          294 -YCLE--GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG  367 (401)
T ss_dssp             -TTTT--TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred             -HHhh--CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence             0011  156777788874 466566677888888888888554 665667778888 8888888888877666667777


Q ss_pred             CC-CCCeEEccCCcc
Q 046382          560 LN-TLEVFKVAYNNL  573 (691)
Q Consensus       560 l~-~L~~L~l~~N~l  573 (691)
                      ++ +++.+.+..+.+
T Consensus       368 ~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          368 FPDDITVIRVPAESV  382 (401)
T ss_dssp             SCTTCCEEEECGGGH
T ss_pred             CCCCccEEEeCHHHH
Confidence            64 677777776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.61  E-value=2.3e-16  Score=177.35  Aligned_cols=176  Identities=19%  Similarity=0.210  Sum_probs=99.0

Q ss_pred             CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEE
Q 046382          333 SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI  412 (691)
Q Consensus       333 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  412 (691)
                      .++.|+.|+|++|.+..+. ..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|
T Consensus       222 ~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence            5677778888887777443 33446777888888888777 66777777778888888888777 567777777778888


Q ss_pred             EccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccc
Q 046382          413 DLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMS  492 (691)
Q Consensus       413 ~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  492 (691)
                      +|++|.++ .+|..+..                                                          +++|+
T Consensus       299 ~L~~N~l~-~lp~~~~~----------------------------------------------------------l~~L~  319 (727)
T 4b8c_D          299 YFFDNMVT-TLPWEFGN----------------------------------------------------------LCNLQ  319 (727)
T ss_dssp             ECCSSCCC-CCCSSTTS----------------------------------------------------------CTTCC
T ss_pred             ECCCCCCC-ccChhhhc----------------------------------------------------------CCCcc
Confidence            88877775 55554332                                                          56777


Q ss_pred             eEEcCCCeeeeccchhhhcccC-CCeEeCCCCcCCcccchhhcCCCcCCEEeCCCc--------cccccCCcccccCCCC
Q 046382          493 GIDLSCNKLTGEIPTQIGYLSG-IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN--------LLHGKIPPQLIVLNTL  563 (691)
Q Consensus       493 ~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L  563 (691)
                      .|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.      .|+.|++++|        .+.+..+..+..+..+
T Consensus       320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~  393 (727)
T 4b8c_D          320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKR  393 (727)
T ss_dssp             CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------------------
T ss_pred             EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhccccc
Confidence            7888888877777776655432 22467777777766664      3455666666        3333444445556666


Q ss_pred             CeEEccCCccccc
Q 046382          564 EVFKVAYNNLSGK  576 (691)
Q Consensus       564 ~~L~l~~N~l~~~  576 (691)
                      ....+++|-+.+.
T Consensus       394 ~~~~ls~Nil~~~  406 (727)
T 4b8c_D          394 TFTVLSYNTLCQH  406 (727)
T ss_dssp             --------CCCGG
T ss_pred             ceeeeeccccccc
Confidence            7777777777543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.9e-15  Score=134.70  Aligned_cols=129  Identities=21%  Similarity=0.271  Sum_probs=103.3

Q ss_pred             CCCccEEeccCCCCC-CCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCC
Q 046382          358 SPYLVTLDLSYNRLH-GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGH  436 (691)
Q Consensus       358 ~~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~  436 (691)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..+++|++|++++|.+++.+|..+..       
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------   86 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------   86 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence            366788888888877 56666777888888888888888755  67788888999999999888666655443       


Q ss_pred             CcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeec-cchhhhcccCC
Q 046382          437 HEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE-IPTQIGYLSGI  515 (691)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L  515 (691)
                                                                         +++|++|++++|.+++. .+..+..+++|
T Consensus        87 ---------------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           87 ---------------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             ---------------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             ---------------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence                                                               57889999999998863 34788999999


Q ss_pred             CeEeCCCCcCCcccc---hhhcCCCcCCEEeCCC
Q 046382          516 HALNLSHNNLTGTIP---TTFSNLKQIESLDLSY  546 (691)
Q Consensus       516 ~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~  546 (691)
                      ++|++++|.+++..+   ..+..+++|+.||+++
T Consensus       116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999987665   5789999999999874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.60  E-value=2.3e-14  Score=149.90  Aligned_cols=334  Identities=12%  Similarity=0.102  Sum_probs=165.7

Q ss_pred             ccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccch
Q 046382          130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE  209 (691)
Q Consensus       130 ~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  209 (691)
                      ++.+...+|.++.+|+++.+..+ ++ .+....|..+++|+.+++..+ ++.+...+|.++++|+.+.+..+ +. .+..
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~  133 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV  133 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence            33444455666666666666532 44 455555555566666666433 44344455555555555544433 22 3333


Q ss_pred             hHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCC
Q 046382          210 RMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSA  289 (691)
Q Consensus       210 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  289 (691)
                      ..|.++..++...                        ...  .......+|..+++|+.+.+.++. .......|.++.+
T Consensus       134 ~aF~~~~~~~~~~------------------------~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~  186 (394)
T 4fs7_A          134 EAFKGCDFKEITI------------------------PEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGK  186 (394)
T ss_dssp             TTTTTCCCSEEEC------------------------CTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTT
T ss_pred             eeeeccccccccc------------------------Ccc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCC
Confidence            3333332211111                        111  111222345555555555554332 1133344555555


Q ss_pred             CCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCC
Q 046382          290 LEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN  369 (691)
Q Consensus       290 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n  369 (691)
                      |+.+.+..+ +......+|..+..|+.+.+..+... .....+...+|+.+.+... ++.+....+..+..++.+.+..+
T Consensus       187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred             ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence            665555544 22233445556666666655544322 2233344556666666432 33344455666677777776665


Q ss_pred             CCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccC
Q 046382          370 RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGR  449 (691)
Q Consensus       370 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~  449 (691)
                      ... .....+..+..++.+......+   ....|..+.+|+.+.+..+ +......++..                    
T Consensus       264 ~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~--------------------  318 (394)
T 4fs7_A          264 KLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFES--------------------  318 (394)
T ss_dssp             TCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTT--------------------
T ss_pred             cce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcC--------------------
Confidence            433 3444566666666666655432   2245666666666666543 22111111111                    


Q ss_pred             cccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCccc
Q 046382          450 ASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTI  529 (691)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  529 (691)
                                                            +++|+.+++.++ ++......|.++++|+.+++..+ ++.+.
T Consensus       319 --------------------------------------c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          319 --------------------------------------CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             --------------------------------------CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             --------------------------------------CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence                                                  345555555433 44344556666666777666655 55455


Q ss_pred             chhhcCCCcCCEEeCCCccccccCCcccccCCCCCe
Q 046382          530 PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEV  565 (691)
Q Consensus       530 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  565 (691)
                      ..+|.++++|+.+++..+ ++ .+...|.+.++|+.
T Consensus       359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            566666667777666544 22 22334555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=4.5e-15  Score=136.46  Aligned_cols=114  Identities=21%  Similarity=0.256  Sum_probs=103.1

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      .+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            46899999999999977777889999999999999999988778889999999999999999988888889999999999


Q ss_pred             ccCCcccccCCCC-CCCCCcCcCcccCCCCCCCCC
Q 046382          568 VAYNNLSGKIPDR-AQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       568 l~~N~l~~~~p~~-~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      +++|++++..+.. ..+..++.+++++||+.|+|+
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999999776653 567889999999999999986

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.1e-14  Score=133.78  Aligned_cols=91  Identities=23%  Similarity=0.244  Sum_probs=64.1

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      +++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            34555666666666544555567777777777777777766666677778888888888887766665667777888888


Q ss_pred             ccCCcccccCC
Q 046382          568 VAYNNLSGKIP  578 (691)
Q Consensus       568 l~~N~l~~~~p  578 (691)
                      +++|++.+..|
T Consensus       131 l~~N~~~~~~~  141 (177)
T 2o6r_A          131 LHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCBCCCHH
T ss_pred             ecCCCeeccCc
Confidence            88888776544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.56  E-value=1.4e-13  Score=143.82  Aligned_cols=154  Identities=14%  Similarity=0.128  Sum_probs=74.3

Q ss_pred             chhhcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhC
Q 046382           86 PKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY  165 (691)
Q Consensus        86 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~  165 (691)
                      ..++.+|.+|+++++..+ ++ .+....|.++++|+.+++..+ +......+|.++.+|+.+.+..+ +. .+....+..
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~  138 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKG  138 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTT
T ss_pred             HHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeec
Confidence            345566666666666533 43 445555666666666666543 44444455666666666555433 22 333333333


Q ss_pred             CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEE
Q 046382          166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL  245 (691)
Q Consensus       166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  245 (691)
                      +. +....... .+..+...+|.++++|+.+.+.++. . .++...|.++.+|+.+.+..+ ++......+.++..|+.+
T Consensus       139 ~~-~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          139 CD-FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             CC-CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             cc-ccccccCc-cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence            32 22222211 1222333455556666666655432 2 345555555555555555443 333333444444455544


Q ss_pred             EccC
Q 046382          246 QLDG  249 (691)
Q Consensus       246 ~L~~  249 (691)
                      .+..
T Consensus       214 ~~~~  217 (394)
T 4fs7_A          214 EFPN  217 (394)
T ss_dssp             CCCT
T ss_pred             ecCC
Confidence            4443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=2.1e-14  Score=130.64  Aligned_cols=109  Identities=25%  Similarity=0.272  Sum_probs=96.5

Q ss_pred             ccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEcc
Q 046382          490 SMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  569 (691)
Q Consensus       490 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  569 (691)
                      +.+.+++++|.++ .+|..+  .++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4578999999998 567655  3889999999999998889999999999999999999998888788999999999999


Q ss_pred             CCcccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382          570 YNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       570 ~N~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      +|++++..+. ...+..++.+++++|||.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999987775 5678889999999999999986

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=3.5e-16  Score=146.75  Aligned_cols=154  Identities=21%  Similarity=0.284  Sum_probs=117.5

Q ss_pred             CCCCccEEeccCCCCCCCcch------hhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhc
Q 046382          357 DSPYLVTLDLSYNRLHGSIPN------RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNT  430 (691)
Q Consensus       357 ~~~~L~~L~ls~n~i~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  430 (691)
                      ..+.++.++++.+.+.+..|.      .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+.. 
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-   91 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-   91 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-
Confidence            344555556666655555444      78888999999999999885 55 7888889999999999887 45543332 


Q ss_pred             cccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhh
Q 046382          431 ALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIG  510 (691)
Q Consensus       431 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  510 (691)
                                                                               +++|++|++++|++++ +| .+.
T Consensus        92 ---------------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~  112 (198)
T 1ds9_A           92 ---------------------------------------------------------ADTLEELWISYNQIAS-LS-GIE  112 (198)
T ss_dssp             ---------------------------------------------------------HHHCSEEEEEEEECCC-HH-HHH
T ss_pred             ---------------------------------------------------------CCcCCEEECcCCcCCc-CC-ccc
Confidence                                                                     5788999999999985 44 688


Q ss_pred             cccCCCeEeCCCCcCCcccc-hhhcCCCcCCEEeCCCccccccCCcc----------cccCCCCCeEEccCCcccc
Q 046382          511 YLSGIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPPQ----------LIVLNTLEVFKVAYNNLSG  575 (691)
Q Consensus       511 ~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~~  575 (691)
                      .+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|..          +..+++|+.||  +|.++.
T Consensus       113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            88999999999999985433 47888999999999999998776653          77888999886  666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=4.8e-14  Score=129.31  Aligned_cols=84  Identities=14%  Similarity=0.146  Sum_probs=48.1

Q ss_pred             cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccch--hhcCCCcCCEEeCCCccccccCCcc----cccCCC
Q 046382          489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT--TFSNLKQIESLDLSYNLLHGKIPPQ----LIVLNT  562 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~  562 (691)
                      ++|++|++++|.+++..+..+..+++|++|+|++|+++ .+|.  .+..+++|+.|++++|+++ ..|..    +..+++
T Consensus        64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~  141 (176)
T 1a9n_A           64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQ  141 (176)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTT
T ss_pred             CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCc
Confidence            44555555555555333344456666666666666665 3343  5666666666666666665 33432    566666


Q ss_pred             CCeEEccCCccc
Q 046382          563 LEVFKVAYNNLS  574 (691)
Q Consensus       563 L~~L~l~~N~l~  574 (691)
                      |+.|++++|.+.
T Consensus       142 L~~Ld~~~n~~~  153 (176)
T 1a9n_A          142 VRVLDFQKVKLK  153 (176)
T ss_dssp             CSEETTEECCHH
T ss_pred             cceeCCCcCCHH
Confidence            666666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=5.1e-14  Score=129.14  Aligned_cols=134  Identities=20%  Similarity=0.203  Sum_probs=93.5

Q ss_pred             hcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCC
Q 046382           89 LYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPG  168 (691)
Q Consensus        89 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~  168 (691)
                      +.++++|++|++++|.++ .+|. +....++|++|++++|.+.+.  ..+..+++|++|++++|+++ .+|..++..+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~   89 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   89 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence            345667788888888776 4454 223334888888888887665  46777888888888888887 556555445778


Q ss_pred             CcEEEccCCcccccCch--hhhCCCCCCEEeccccccccccchh---HhhcCCCCCEEEcccccCC
Q 046382          169 LMDLNLSRNAFNGSIPS--SFADMKMLERLDISDNQLTGEIPER---MATGCFSLKILALSNNSLQ  229 (691)
Q Consensus       169 L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~  229 (691)
                      |++|++++|.+. .+|.  .+..+++|++|++++|.++ .+|..   .+..+++|+.|++++|...
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888888888876 3444  6777888888888888877 56654   3456777777777776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=5.6e-14  Score=128.18  Aligned_cols=107  Identities=19%  Similarity=0.229  Sum_probs=91.5

Q ss_pred             ceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCC
Q 046382          492 SGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN  571 (691)
Q Consensus       492 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  571 (691)
                      +.+++++|+++ .+|..+.  ++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67899999987 6676553  78999999999999888888999999999999999999777777788999999999999


Q ss_pred             cccccCCC-CCCCCCcCcCcccCCCCCCCCC
Q 046382          572 NLSGKIPD-RAQFSTFEEDSYEGNPFLCGKP  601 (691)
Q Consensus       572 ~l~~~~p~-~~~~~~~~~~~~~~Np~~c~~~  601 (691)
                      +|++..+. ...+..++.+++++|||.|+|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99987665 5667888889999999999885

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=2.7e-13  Score=123.22  Aligned_cols=91  Identities=23%  Similarity=0.190  Sum_probs=84.4

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      .+++++|+|++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            46789999999999988899999999999999999999988888899999999999999999988888899999999999


Q ss_pred             ccCCcccccCC
Q 046382          568 VAYNNLSGKIP  578 (691)
Q Consensus       568 l~~N~l~~~~p  578 (691)
                      +++|++.+..+
T Consensus       109 L~~N~~~c~c~  119 (170)
T 3g39_A          109 LLNNPWDCACS  119 (170)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCCCCCch
Confidence            99999987644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=6.9e-13  Score=120.95  Aligned_cols=91  Identities=23%  Similarity=0.209  Sum_probs=83.3

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      .++|++|+|++|.+++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            46799999999999988899999999999999999999987777789999999999999999977777799999999999


Q ss_pred             ccCCcccccCC
Q 046382          568 VAYNNLSGKIP  578 (691)
Q Consensus       568 l~~N~l~~~~p  578 (691)
                      +++|++.+..+
T Consensus       112 L~~N~~~c~~~  122 (174)
T 2r9u_A          112 LYNNPWDCECR  122 (174)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCcccccc
Confidence            99999986543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=6.4e-15  Score=138.08  Aligned_cols=130  Identities=21%  Similarity=0.247  Sum_probs=64.1

Q ss_pred             CCCCCEEEccCCCCcccCch------HHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhC
Q 046382           92 QHDLKNADLSHLNLSGQFPN------WLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTY  165 (691)
Q Consensus        92 l~~L~~L~L~~~~~~~~~~~------~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~  165 (691)
                      ...++.++++.+.+.+..|.      . +..+++|++|++++|++.+ ++ .+..+++|++|++++|.++ .+|..+.. 
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-   91 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-   91 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-
T ss_pred             cccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-
Confidence            34445555555444444332      3 3556666666666665544 23 4555555555555555555 44443332 


Q ss_pred             CCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccch-hHhhcCCCCCEEEcccccCC
Q 046382          166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE-RMATGCFSLKILALSNNSLQ  229 (691)
Q Consensus       166 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~  229 (691)
                      +++|++|++++|.+++ +| .+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccc
Confidence            3455555555555553 22 3555555555555555554 3222 22334444444444444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.38  E-value=4e-11  Score=125.24  Aligned_cols=315  Identities=11%  Similarity=0.094  Sum_probs=170.1

Q ss_pred             hhcCCC-CCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCc---ccccCCcCccCCCccCEEEccCCcCcccCchhhh
Q 046382           88 FLYHQH-DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS---LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIG  163 (691)
Q Consensus        88 ~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~  163 (691)
                      ++.++. .|+.+.+..+ ++ .+....|.++++|+.+.+..+.   ++.....+|..+.+|+.+.+..+ ++ .++...+
T Consensus        58 aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF  133 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAF  133 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTT
T ss_pred             hccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhh
Confidence            344443 3666666543 33 4444455666666666665542   44444455666666666655543 33 4445555


Q ss_pred             hCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCC
Q 046382          164 TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLM  243 (691)
Q Consensus       164 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  243 (691)
                      ..+.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++ .+....|. ..+|+.+.+..+-. ......+..+.+++
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~  208 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALS  208 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCC
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCccc-ccccchhhhccccc
Confidence            55666666666533 33344555666666666666544 33 44455544 34566666654322 23334455555665


Q ss_pred             EEEccCCcCcccCCcc-------------ccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcC
Q 046382          244 RLQLDGNKFIGEIPES-------------LSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQ  310 (691)
Q Consensus       244 ~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  310 (691)
                      ................             +.....+..+.+.. .+......+|..+..|+.+.+.++... ....+|..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~  286 (394)
T 4gt6_A          209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN  286 (394)
T ss_dssp             EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred             eecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccc
Confidence            5554443322111000             11122333333322 122233445667777777777655433 44556777


Q ss_pred             CCCCCEEEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEe
Q 046382          311 LSALKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLL  389 (691)
Q Consensus       311 l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  389 (691)
                      ++.|+.+.+.. .+.......| .+.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++......|.+|++|+.++
T Consensus       287 c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          287 CPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred             ccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence            77788887753 4444555555 5677888887653 55566677888888888888654 5545566788888888888


Q ss_pred             cccCcCcccCCcCCCCCCCCCEEEccCCCC
Q 046382          390 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNL  419 (691)
Q Consensus       390 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  419 (691)
                      +.++....   ..+..+.+|+.+.+..+.+
T Consensus       364 ~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          364 YSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ESSCHHHH---HTCBCCCCC----------
T ss_pred             ECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            87775432   3556667777777766544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=9.2e-13  Score=135.35  Aligned_cols=110  Identities=17%  Similarity=0.232  Sum_probs=94.0

Q ss_pred             ceEEcCCC-eeeeccchhhhcccCCCeEeCCC-CcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEcc
Q 046382          492 SGIDLSCN-KLTGEIPTQIGYLSGIHALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  569 (691)
Q Consensus       492 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  569 (691)
                      ..++++++ +++ .+|. +..+++|+.|+|++ |.|++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688888 888 5777 89999999999996 99998888889999999999999999999888899999999999999


Q ss_pred             CCcccccCCCCCCCCCcCcCcccCCCCCCCCCCC
Q 046382          570 YNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLS  603 (691)
Q Consensus       570 ~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~  603 (691)
                      +|+|++..+.......++.+++.+|++.|+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~  122 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALR  122 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGH
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCCccH
Confidence            9999987766544444888899999999998754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.35  E-value=8.3e-11  Score=122.82  Aligned_cols=334  Identities=13%  Similarity=0.111  Sum_probs=173.1

Q ss_pred             cCchhhhhCCC-CCcEEEccCCcccccCchhhhCCCCCCEEeccccc---cccccchhHhhcCCCCCEEEcccccCCccC
Q 046382          157 HIPVEIGTYLP-GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ---LTGEIPERMATGCFSLKILALSNNSLQGHI  232 (691)
Q Consensus       157 ~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  232 (691)
                      .+....|..+. .|+.+.+..+ ++.+...+|.++++|+++.+..|.   ++ .+....|.++.+|+.+.+..+ ++...
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence            45555555453 5888888653 666777788888888888887663   55 667777777778877766544 44445


Q ss_pred             cccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCC
Q 046382          233 FSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLS  312 (691)
Q Consensus       233 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~  312 (691)
                      ...|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +......+|. ...|+.+.+..+... ....+|..+.
T Consensus       130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~  205 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECF  205 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred             hhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcc
Confidence            566677777887777644 33344566777777777777654 3323333443 356777776654332 3445566666


Q ss_pred             CCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEeccc
Q 046382          313 ALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAH  392 (691)
Q Consensus       313 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~  392 (691)
                      .++................+...          .........+.....+..+.+... +.......|..+..|+.+.+.+
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~  274 (394)
T 4gt6_A          206 ALSTITSDSESYPAIDNVLYEKS----------ANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPD  274 (394)
T ss_dssp             TCCEEEECCSSSCBSSSCEEEEC----------TTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCT
T ss_pred             ccceecccccccccccceeeccc----------ccccccccccccccccceEEcCCc-ceEcccceeeecccccEEeccc
Confidence            66666655443321111111000          000000001111222233332211 1112233455555555555544


Q ss_pred             CcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccE
Q 046382          393 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETV  472 (691)
Q Consensus       393 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (691)
                      +... ....+|.++++|+.+.+.. .++.....+|..                                           
T Consensus       275 ~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~-------------------------------------------  309 (394)
T 4gt6_A          275 SVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAG-------------------------------------------  309 (394)
T ss_dssp             TCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTT-------------------------------------------
T ss_pred             ccce-ecCcccccccccccccCCC-cccccCceeecC-------------------------------------------
Confidence            3332 4445555566666665532 222111111111                                           


Q ss_pred             EEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccccc
Q 046382          473 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK  552 (691)
Q Consensus       473 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  552 (691)
                                     +.+|+++++..+ ++......|.++++|+.+.|..+ ++.+...+|.++++|+.+++.++.... 
T Consensus       310 ---------------c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-  371 (394)
T 4gt6_A          310 ---------------CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-  371 (394)
T ss_dssp             ---------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-
T ss_pred             ---------------CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-
Confidence                           345555666543 44344566777777777777544 554556677777777777777765432 


Q ss_pred             CCcccccCCCCCeEEccCCcc
Q 046382          553 IPPQLIVLNTLEVFKVAYNNL  573 (691)
Q Consensus       553 ~p~~l~~l~~L~~L~l~~N~l  573 (691)
                        ..+.....|+.+.+..|.+
T Consensus       372 --~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          372 --NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             --HTCBCCCCC----------
T ss_pred             --hhhhccCCCCEEEeCCCCE
Confidence              3455566677776665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=1.7e-13  Score=141.07  Aligned_cols=138  Identities=17%  Similarity=0.056  Sum_probs=65.6

Q ss_pred             CCCCEEEccCCcccccCCcCc-cCCCccCEEEccCCcCcccCchhhh----hCCCCCcEEEccCCccccc----Cchhhh
Q 046382          118 TNLVMLLLANNSLFGSFRMPI-HSHQNLATLDVSNNFFHGHIPVEIG----TYLPGLMDLNLSRNAFNGS----IPSSFA  188 (691)
Q Consensus       118 ~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~----~~l~~L~~L~L~~n~i~~~----~~~~~~  188 (691)
                      ++|++|+|++|.+.+.....+ ..+++|++|+|++|.+++.....+.    ...++|++|+|++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            455555555555533221111 1234555556665555432222221    1234566666666655431    223345


Q ss_pred             CCCCCCEEeccccccccccch---hHhhcCCCCCEEEcccccCCccCc----ccccCCCCCCEEEccCCcCccc
Q 046382          189 DMKMLERLDISDNQLTGEIPE---RMATGCFSLKILALSNNSLQGHIF----SKKFNLTNLMRLQLDGNKFIGE  255 (691)
Q Consensus       189 ~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~  255 (691)
                      .+++|++|++++|.+++....   ..+...++|+.|++++|.++....    ..+...++|++|++++|.++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            556666666666665522111   112334566666666666654222    2233456666666666666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=2.4e-13  Score=139.94  Aligned_cols=168  Identities=17%  Similarity=0.108  Sum_probs=87.7

Q ss_pred             CCCCCEEEccCCcccccCCcCc----c-CCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhh----
Q 046382          117 NTNLVMLLLANNSLFGSFRMPI----H-SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF----  187 (691)
Q Consensus       117 l~~L~~L~L~~n~~~~~~~~~l----~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----  187 (691)
                      ++.|++|++++|.+.......+    . ..++|++|+|++|.+++.....+...+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4567777777777654322222    2 236788888888877644444444445677777777777764433333    


Q ss_pred             -hCCCCCCEEeccccccccccchhH---hhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCC
Q 046382          188 -ADMKMLERLDISDNQLTGEIPERM---ATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKC  263 (691)
Q Consensus       188 -~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  263 (691)
                       ...++|++|++++|.+++.....+   +...++|++|++++|.+++....                    .++..+...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~~  210 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDRN  210 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGGC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhcC
Confidence             235667777777776653211111   13345555555555555432110                    112233344


Q ss_pred             CCCCEEEccCCcCCCc----chhhhhcCCCCCEEecCCCccCCCc
Q 046382          264 YLLGGLYLSDNHLSGE----IPRWLGNLSALEGIRMPNNNLEGPI  304 (691)
Q Consensus       264 ~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~  304 (691)
                      ++|+.|++++|.+++.    +...+...++|++|++++|.+++..
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            4555555555555432    2223334455666666666555433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=1.7e-11  Score=125.75  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=80.4

Q ss_pred             ccccceEEcCC-CeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeE
Q 046382          488 LTSMSGIDLSC-NKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVF  566 (691)
Q Consensus       488 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  566 (691)
                      +++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|||++|+|++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            57899999996 999988889999999999999999999999999999999999999999999977777777666 9999


Q ss_pred             EccCCccccc
Q 046382          567 KVAYNNLSGK  576 (691)
Q Consensus       567 ~l~~N~l~~~  576 (691)
                      ++++|++.+.
T Consensus       109 ~l~~N~~~c~  118 (347)
T 2ifg_A          109 VLSGNPLHCS  118 (347)
T ss_dssp             ECCSSCCCCC
T ss_pred             EeeCCCccCC
Confidence            9999999753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.16  E-value=3.8e-09  Score=109.63  Aligned_cols=287  Identities=11%  Similarity=0.066  Sum_probs=126.7

Q ss_pred             hcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCC
Q 046382           89 LYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPG  168 (691)
Q Consensus        89 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~  168 (691)
                      +....+|+.+.+... ++ .+++..|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .+....+.. .+
T Consensus        42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TD  114 (379)
T ss_dssp             GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CC
T ss_pred             cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CC
Confidence            333445555555432 33 444444566666666666443 444444455554 4555555432 33 444444443 35


Q ss_pred             CcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCc------------cCcccc
Q 046382          169 LMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG------------HIFSKK  236 (691)
Q Consensus       169 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~  236 (691)
                      |+.+.+..+ ++.+....|.+. +++.+.+..+ ++ .+....+..+..++...+..+....            .....+
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY  190 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred             cccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccc
Confidence            666666543 222333334433 3444444332 22 3334444555555555554432211            011122


Q ss_pred             cCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCE
Q 046382          237 FNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKI  316 (691)
Q Consensus       237 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  316 (691)
                      .....+..+.+.... .......+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.....+|..+.+|+.
T Consensus       191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT  267 (379)
T ss_dssp             CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence            223334444333322 1122334444555555555433 22233334445555555555443 22233344555555555


Q ss_pred             EEccCCcCcccCCCCC-CCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecc
Q 046382          317 LDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLA  391 (691)
Q Consensus       317 L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~  391 (691)
                      +.+..+ +.......| .+.+|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+.+.
T Consensus       268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            555432 222222333 3455555555544444444445555555555555432 332333344455555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.07  E-value=1.8e-08  Score=104.47  Aligned_cols=71  Identities=8%  Similarity=0.058  Sum_probs=41.8

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccC
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL  560 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  560 (691)
                      +++|+.+++.++.++......|.++.+|+.+.|..+ ++.+...+|.++++|+++.+..+ ++.+-..+|.+.
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            345555666555555444556666777777777543 54445566777777777776544 544444555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=6.2e-09  Score=105.97  Aligned_cols=202  Identities=16%  Similarity=0.151  Sum_probs=99.0

Q ss_pred             cccEEEecCCCCCC-C-------cchhhcCCCCCCEEEccCCCCc---------ccCchHHhhcCCCCCEEEccCCcccc
Q 046382           70 QLTSISLSGYIDGG-T-------FPKFLYHQHDLKNADLSHLNLS---------GQFPNWLLENNTNLVMLLLANNSLFG  132 (691)
Q Consensus        70 ~L~~L~L~~~~~~~-~-------~~~~l~~l~~L~~L~L~~~~~~---------~~~~~~~~~~l~~L~~L~L~~n~~~~  132 (691)
                      .++.|.+..+...+ .       +...+.++++|+.|.+......         +.+. .++..+++|+.|+|++|.-..
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce
Confidence            56666666554331 1       1223445677788777654221         1122 334667777777777762111


Q ss_pred             cCCcCccCCCccCEEEccCCcCcccCchhhh-hCCCCCcEEEccCC--ccccc-----Cchhh--hCCCCCCEEeccccc
Q 046382          133 SFRMPIHSHQNLATLDVSNNFFHGHIPVEIG-TYLPGLMDLNLSRN--AFNGS-----IPSSF--ADMKMLERLDISDNQ  202 (691)
Q Consensus       133 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~L~~n--~i~~~-----~~~~~--~~l~~L~~L~L~~n~  202 (691)
                       .+. +. +++|++|++..|.+.......+. ..+|+|++|+|+.+  ...+.     +...+  ..+++|++|++.+|.
T Consensus       187 -l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          187 -IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             -CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             -ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence             111 22 66777777777666533333333 13667777776431  11100     00111  124555555555555


Q ss_pred             cccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccC----CccccCCCCCCEEEccCCcCCC
Q 046382          203 LTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEI----PESLSKCYLLGGLYLSDNHLSG  278 (691)
Q Consensus       203 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~  278 (691)
                      +.+..+..++.                      ...+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.+++
T Consensus       264 i~~~~~~~la~----------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          264 EQNVVVEMFLE----------------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             THHHHHHHHHH----------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CchHHHHHHHh----------------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            44322222221                      012455666666666555421    2223445667777777776665


Q ss_pred             cchhhhhc-CCCCCEEecCCCc
Q 046382          279 EIPRWLGN-LSALEGIRMPNNN  299 (691)
Q Consensus       279 ~~~~~l~~-l~~L~~L~l~~n~  299 (691)
                      .....+.. +  ...++++.++
T Consensus       322 ~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          322 EMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHHHc--CCEEEecCCc
Confidence            44444443 2  3456666655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=5.9e-10  Score=113.51  Aligned_cols=156  Identities=17%  Similarity=0.164  Sum_probs=101.4

Q ss_pred             CCccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCCCcccCchHHh-hcCCCCCEEEccCC--ccccc-----CCcCc
Q 046382           67 PKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLL-ENNTNLVMLLLANN--SLFGS-----FRMPI  138 (691)
Q Consensus        67 ~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~~l~~L~~L~L~~n--~~~~~-----~~~~l  138 (691)
                      ..++|++|+++++.-. .++. + .+++|++|++..+.+.......+. ..+++|++|+|+.+  ...+.     +...+
T Consensus       170 ~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             TCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             cCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            3448888888876311 2222 3 377899999988877643333332 26899999988632  11111     11112


Q ss_pred             --cCCCccCEEEccCCcCcccCchhhhh--CCCCCcEEEccCCcccccC----chhhhCCCCCCEEeccccccccccchh
Q 046382          139 --HSHQNLATLDVSNNFFHGHIPVEIGT--YLPGLMDLNLSRNAFNGSI----PSSFADMKMLERLDISDNQLTGEIPER  210 (691)
Q Consensus       139 --~~l~~L~~L~Ls~n~i~~~~~~~~~~--~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~  210 (691)
                        ..+|+|++|++++|.+.+..+..++.  .+++|++|+|+.|.+....    +..+..+++|+.|++++|.+++..-..
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence              35789999999999887555444443  3678999999999988543    334456799999999999987544443


Q ss_pred             HhhcCCCCCEEEccccc
Q 046382          211 MATGCFSLKILALSNNS  227 (691)
Q Consensus       211 ~~~~l~~L~~L~l~~n~  227 (691)
                      +...+  ...++++.++
T Consensus       327 l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHC--CSEEECCSBC
T ss_pred             HHHHc--CCEEEecCCc
Confidence            43223  3568888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=7e-08  Score=88.48  Aligned_cols=60  Identities=8%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             ccceEEcCCCeeeec----cchhhhcccCCCeEeC--CCCcCCcc----cchhhcCCCcCCEEeCCCccc
Q 046382          490 SMSGIDLSCNKLTGE----IPTQIGYLSGIHALNL--SHNNLTGT----IPTTFSNLKQIESLDLSYNLL  549 (691)
Q Consensus       490 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l  549 (691)
                      +|++|+|++|.+++.    +...+...++|++|+|  ++|.|...    +...+...++|++|+|++|.+
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            344444444444422    2233444445555555  45555422    222333345555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=8.8e-08  Score=87.82  Aligned_cols=86  Identities=14%  Similarity=0.196  Sum_probs=66.4

Q ss_pred             cccceEEcCCCeeeec----cchhhhcccCCCeEeCCCCcCCcc----cchhhcCCCcCCEEeC--CCcccccc----CC
Q 046382          489 TSMSGIDLSCNKLTGE----IPTQIGYLSGIHALNLSHNNLTGT----IPTTFSNLKQIESLDL--SYNLLHGK----IP  554 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p  554 (691)
                      ++|++|+|++|.+...    +...+...++|++|+|++|.|...    +...+...++|++|+|  ++|.+...    +.
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            4567777777776532    344566678999999999999753    4566778899999999  88999754    34


Q ss_pred             cccccCCCCCeEEccCCccc
Q 046382          555 PQLIVLNTLEVFKVAYNNLS  574 (691)
Q Consensus       555 ~~l~~l~~L~~L~l~~N~l~  574 (691)
                      ..+...++|+.|++++|.+.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            45666789999999999885

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.38  E-value=3.4e-07  Score=88.08  Aligned_cols=64  Identities=25%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             ccccceEEcCCCeeee--ccchhhhcccCCCeEeCCCCcCCcccchhhcCCC--cCCEEeCCCccccccC
Q 046382          488 LTSMSGIDLSCNKLTG--EIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLK--QIESLDLSYNLLHGKI  553 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~  553 (691)
                      +++|+.|+|++|++++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|++.+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence            4455555555555554  2234444555555555555555532  1122222  5555555555555433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=3e-07  Score=88.51  Aligned_cols=89  Identities=22%  Similarity=0.288  Sum_probs=68.1

Q ss_pred             cccce--EEcCCCeee---eccchhhhcccCCCeEeCCCCcCCc--ccchhhcCCCcCCEEeCCCccccccCCcccccCC
Q 046382          489 TSMSG--IDLSCNKLT---GEIPTQIGYLSGIHALNLSHNNLTG--TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN  561 (691)
Q Consensus       489 ~~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  561 (691)
                      +.|..  ++++.|...   +..+....++++|++|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  +.+..+.
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~  218 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK  218 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence            44555  778888543   2223333678999999999999997  3457788999999999999999865  3344444


Q ss_pred             --CCCeEEccCCcccccCCC
Q 046382          562 --TLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       562 --~L~~L~l~~N~l~~~~p~  579 (691)
                        +|+.|++++|++++.+|.
T Consensus       219 ~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          219 GLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             TSCCSEEECTTSTTGGGCSS
T ss_pred             cCCcceEEccCCcCccccCc
Confidence              999999999999987764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=8.8e-07  Score=78.80  Aligned_cols=86  Identities=9%  Similarity=0.058  Sum_probs=59.5

Q ss_pred             ccccEEEecCCCCCCCcchhhcCCCCCCEEEccCCC-CcccCchHHhhcC----CCCCEEEccCCc-ccccCCcCccCCC
Q 046382           69 FQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLN-LSGQFPNWLLENN----TNLVMLLLANNS-LFGSFRMPIHSHQ  142 (691)
Q Consensus        69 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~l~~l~  142 (691)
                      .+|++||+++|.++......+..+++|++|+|++|. +++..-..+ ..+    ++|++|+|++|. +++..-..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            378888888888877766777888888888888885 654333333 333    368888888874 5554444566677


Q ss_pred             ccCEEEccCCc-Cc
Q 046382          143 NLATLDVSNNF-FH  155 (691)
Q Consensus       143 ~L~~L~Ls~n~-i~  155 (691)
                      +|++|++++|. ++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            77777777774 44

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.07  E-value=1.4e-06  Score=77.52  Aligned_cols=84  Identities=12%  Similarity=0.048  Sum_probs=69.3

Q ss_pred             cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCc-CCcccchhhcCC----CcCCEEeCCCcc-ccccCCcccccCCC
Q 046382          489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNN-LTGTIPTTFSNL----KQIESLDLSYNL-LHGKIPPQLIVLNT  562 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~  562 (691)
                      ..|++||++++.++..--..+..+++|++|+|++|. |+..--..+..+    ++|++|+|++|. |+...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            469999999999987767778899999999999995 764444445554    479999999985 88766667888999


Q ss_pred             CCeEEccCCc
Q 046382          563 LEVFKVAYNN  572 (691)
Q Consensus       563 L~~L~l~~N~  572 (691)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.62  E-value=4.4e-05  Score=64.78  Aligned_cols=62  Identities=27%  Similarity=0.351  Sum_probs=39.3

Q ss_pred             eEeCCCCcCC-cccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCC
Q 046382          517 ALNLSHNNLT-GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNP  595 (691)
Q Consensus       517 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np  595 (691)
                      .++.+++.++ ..+|..+  -++|+.|+|++|+|+...+..|..+++|+.|                       ++.|||
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L-----------------------~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTA-----------------------HLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEE-----------------------ECCSSC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEE-----------------------EecCCC
Confidence            5677777775 2344332  2357777777777776555566666666554                       566788


Q ss_pred             CCCCCCCC
Q 046382          596 FLCGKPLS  603 (691)
Q Consensus       596 ~~c~~~l~  603 (691)
                      |.|+|.+.
T Consensus        67 ~~CdC~l~   74 (130)
T 3rfe_A           67 WRCDCRLV   74 (130)
T ss_dssp             CBCSGGGH
T ss_pred             eeccCccH
Confidence            88888764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.12  E-value=0.00028  Score=63.91  Aligned_cols=14  Identities=29%  Similarity=0.380  Sum_probs=7.2

Q ss_pred             hcCCCCCEEEccCC
Q 046382          115 ENNTNLVMLLLANN  128 (691)
Q Consensus       115 ~~l~~L~~L~L~~n  128 (691)
                      .+-+.|++|+|+++
T Consensus        38 ~~n~~L~~L~L~~n   51 (197)
T 1pgv_A           38 EDDTDLKEVNINNM   51 (197)
T ss_dssp             TTCSSCCEEECTTC
T ss_pred             hcCCCccEEECCCC
Confidence            34455555555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.01  E-value=0.0005  Score=62.26  Aligned_cols=38  Identities=13%  Similarity=0.344  Sum_probs=18.7

Q ss_pred             CCCcEEEccCC-cccc----cCchhhhCCCCCCEEeccccccc
Q 046382          167 PGLMDLNLSRN-AFNG----SIPSSFADMKMLERLDISDNQLT  204 (691)
Q Consensus       167 ~~L~~L~L~~n-~i~~----~~~~~~~~l~~L~~L~L~~n~l~  204 (691)
                      +.|++|+|++| .|..    .+.+.+..-+.|++|+|++|.+.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            45566666553 4432    12233444455555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.71  E-value=0.0023  Score=54.01  Aligned_cols=57  Identities=26%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             ceEEcCCCeee-eccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382          492 SGIDLSCNKLT-GEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  550 (691)
Q Consensus       492 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (691)
                      ..++.+++.++ ..+|..+  -++|+.|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47899999997 3556443  247999999999999888888999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	691
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.6 bits (210), Expect = 8e-19
 Identities = 63/262 (24%), Positives = 100/262 (38%), Gaps = 5/262 (1%)

Query: 169 LMDLNLSRNAFNG--SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNN 226
           + +L+LS         IPSS A++  L  L I                   L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 227 SLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGN 286
           ++ G I      +  L+ L    N   G +P S+S    L G+    N +SG IP   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 287 LSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNK 346
            S L      + N              L  +DLS N + G     F      Q       
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 347 IEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL 406
                   +  S  L  LDL  NR++G++P  + +L  L+ L ++ N + GEIP Q   L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 407 KEVRLIDLSHNNL--SGHIPSC 426
           +   +   ++N       +P+C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 80.6 bits (197), Expect = 4e-17
 Identities = 52/292 (17%), Positives = 102/292 (34%), Gaps = 39/292 (13%)

Query: 317 LDLSNNSIFGTLP---SCFSPAHIEQVHLSKN-KIEGRLESIIHDSPYLVTLDLSYNRLH 372
           LDLS  ++    P   S  +  ++  +++     + G +   I     L  L +++  + 
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 373 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTAL 432
           G+IP+ + ++  L  L  ++N + G +P  +  L  +  I    N +SG IP    + + 
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 433 SGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMS 492
                             +           +  M + +       + +            
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL------ 228

Query: 493 GIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 552
                          ++G    ++ L+L +N + GT+P   + LK + SL++S+N     
Sbjct: 229 -----AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN----- 278

Query: 553 IPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK 604
                              NL G+IP       F+  +Y  N  LCG PL  
Sbjct: 279 -------------------NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.2 bits (178), Expect = 1e-14
 Identities = 56/262 (21%), Positives = 90/262 (34%), Gaps = 26/262 (9%)

Query: 95  LKNADLSHLNLSGQFP-NWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF 153
           + N DLS LNL   +P    L N   L  L +   +       P  +           + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
                  +  + +  L+ L+ S NA +G++P S + +  L  +    N+++G IP+   +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 214 GCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCY--------- 264
                  + +S N L G I     NL                     S            
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 265 -------------LLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQL 311
                         L GL L +N + G +P+ L  L  L  + +  NNL G IP +   L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 312 SALKILDLSNNSIF--GTLPSC 331
               +   +NN       LP+C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 1e-17
 Identities = 52/283 (18%), Positives = 80/283 (28%), Gaps = 9/283 (3%)

Query: 140 SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDIS 199
            ++   T           +PV I         + L  N  +    +SF   + L  L + 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 200 DNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPES 259
            N L               ++    N  L+    +    L  L  L LD        P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 260 LSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDL 319
                 L  LYL DN L         +L  L  + +  N +       F  L +L  L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 320 SNNSIFGTLPSCFSPAHIEQVHL-SKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNR 378
             N +    P  F             N +       +     L  L L+ N        R
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

Query: 379 IDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG 421
                 L     + + +   +P    +L    L  L+ N+L G
Sbjct: 245 -PLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 7e-14
 Identities = 57/257 (22%), Positives = 93/257 (36%), Gaps = 5/257 (1%)

Query: 93  HDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNN 152
              +   L    +S            NL +L L +N L             L  LD+S+N
Sbjct: 32  AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 153 FFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMA 212
                +       L  L  L+L R       P  F  +  L+ L + DN L   +P+   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTF 149

Query: 213 TGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLS 272
               +L  L L  N +          L +L RL L  N+     P +      L  LYL 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 273 DNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCF 332
            N+LS      L  L AL+ +R+ +N             + L+    S++ +  +LP   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRL 268

Query: 333 SPAHIEQVHLSKNKIEG 349
           +   +++  L+ N ++G
Sbjct: 269 AGRDLKR--LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 2e-13
 Identities = 44/260 (16%), Positives = 75/260 (28%), Gaps = 10/260 (3%)

Query: 20  SMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEIC-AETESHYNSLTPKFQLTSISLSG 78
           + +++ L  N    +P +         L                                
Sbjct: 33  ASQRIFLHGNRISHVPAAS--FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 79  YIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPI 138
                  P   +    L    L    L    P         L  L L +N+L        
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDDTF 149

Query: 139 HSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDI 198
               NL  L +  N     +P      L  L  L L +N      P +F D+  L  L +
Sbjct: 150 RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 199 SDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE 258
             N L+  +P        +L+ L L++N       ++      L + +   ++    +P+
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQ 266

Query: 259 SLSKCYLLGGLYLSDNHLSG 278
            L+   L     L+ N L G
Sbjct: 267 RLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 46/281 (16%), Positives = 95/281 (33%), Gaps = 20/281 (7%)

Query: 250 NKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC 309
            + +  +P  +        ++L  N +S            L  + + +N L       F 
Sbjct: 20  QQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 310 QLSALKILDLSNNSIFGTL-PSCFSP-AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLS 367
            L+ L+ LDLS+N+   ++ P+ F     +  +HL +  ++     +      L  L L 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 368 YNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
            N L     +    L  L +L L  N I          L  +  + L  N ++   P   
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 428 VNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGR- 486
            +               +          + LP+ +  P+   + ++          + R 
Sbjct: 198 RD------------LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTG 527
           +   +     S +++   +P +   L+G     L+ N+L G
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 6/232 (2%)

Query: 195 RLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIG 254
                   L   +P  +     + + + L  N +     +      NL  L L  N    
Sbjct: 15  TTSCPQQGLQ-AVPVGIPA---ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 255 EIPESLSKCYLLGGLYLSDNHLSGEI-PRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSA 313
               + +   LL  L LSDN     + P     L  L  + +    L+   P  F  L+A
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 314 LKILDLSNNSIFGTLPSCF-SPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH 372
           L+ L L +N++       F    ++  + L  N+I    E        L  L L  NR+ 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 373 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIP 424
              P+    L +L  L L  N +       L  L+ ++ + L+ N       
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 9e-07
 Identities = 39/242 (16%), Positives = 66/242 (27%), Gaps = 13/242 (5%)

Query: 362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG 421
           VT       L  ++P  I        + L  N I           + + ++ L  N L+ 
Sbjct: 14  VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 422 HIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSY 481
              +     AL      +          A+ +    L             +         
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL---------HTLHLDRCGLQELG 121

Query: 482 YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIES 541
               R L ++  + L  N L          L  +  L L  N ++      F  L  ++ 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 542 LDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEED-SYEGNPFLCGK 600
           L L  N +    P     L  L    +  NNLS    +        +      NP++C  
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 601 PL 602
             
Sbjct: 242 RA 243

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 6e-17
 Identities = 64/348 (18%), Positives = 112/348 (32%), Gaps = 33/348 (9%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
            S+  + +L ++ ++  SNN    I     PL NL+KL           +    +     
Sbjct: 57  KSIDGVEYLNNLTQINFSNNQLTDIT----PLKNLTKLVDILMNNNQIADITPLANLTNL 112

Query: 70  QLTSISLSGYIDGGTFPKF------------LYHQHDLKNADLSHLNLSGQFPNWLLENN 117
              ++  +   D                   +     L           G     L    
Sbjct: 113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 172

Query: 118 TNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN 177
               +  L  +S   S    +    NL +L  +NN      P+ I T L    +L+L+ N
Sbjct: 173 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGN 229

Query: 178 AFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKF 237
                   + A +  L  LD+++NQ++   P    +G   L  L L  N +         
Sbjct: 230 QLKD--IGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISPLAGL 284

Query: 238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297
                + L  +  + I  I         L  L L  N++S   P  + +L+ L+ +   N
Sbjct: 285 TALTNLELNENQLEDISPIS----NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 338

Query: 298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKN 345
           N +          L+ +  L   +N I    P       I Q+ L+  
Sbjct: 339 NKVSDVS--SLANLTNINWLSAGHNQISDLTPLANLT-RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.5 bits (192), Expect = 4e-16
 Identities = 77/386 (19%), Positives = 131/386 (33%), Gaps = 39/386 (10%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
           T  +S   L  +  L            S++ +  L+ L   +           N LT   
Sbjct: 35  TDTVSQTDLDQVTTLQADRLGI----KSIDGVEYLNNLTQIN--------FSNNQLTDIT 82

Query: 70  QLTSI-SLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANN 128
            L ++  L   +        +    +L N     L  +       L+N TNL  L L++N
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 129 SLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSF- 187
           ++     +   +                   V     L  L  L     + N     S  
Sbjct: 143 TISDISALSGLTSLQ---------QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 188 ADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL 247
           A +  LE L  ++NQ++   P  +     +L  L+L+ N L+        +LTNL  L L
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIE 307
             N+     P  LS    L  L L  N +S   P     L+AL  + +  N         
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQ--LEDISP 302

Query: 308 FCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLS 367
              L  L  L L  N+I   +    S   ++++  + NK+     S + +   +  L   
Sbjct: 303 ISNLKNLTYLTLYFNNISD-ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 368 YNRLHGSIPNRIDRLPQLNYLLLAHN 393
           +N++    P  +  L ++  L L   
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.0 bits (175), Expect = 5e-14
 Identities = 58/408 (14%), Positives = 119/408 (29%), Gaps = 47/408 (11%)

Query: 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN 225
           L   M   L +     ++  S  D+  +  L      +   I         +L  +  SN
Sbjct: 21  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSN 75

Query: 226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG 285
           N L          L NL +L             +              N+   +I     
Sbjct: 76  NQLTDIT-----PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 286 NLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKN 345
             +        N   +         L  L   +   +       +      I    +S  
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 346 KIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 405
            +  +L ++         L  + N++    P  I     L+ L L  N +K      L  
Sbjct: 191 SVLAKLTNLES-------LIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLAS 239

Query: 406 LKEVRLIDLSHNNLSGHIPSCLVN--TALSGGHHEAVAPTSIWCGRASVYISACLPSRSA 463
           L  +  +DL++N +S   P   +   T L  G ++    + +                  
Sbjct: 240 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG---------------- 283

Query: 464 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHN 523
             +     ++     +        L +++ + L  N ++   P  +  L+ +  L  ++N
Sbjct: 284 --LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 339

Query: 524 NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN 571
            ++    ++ +NL  I  L   +N +    P  L  L  +    +   
Sbjct: 340 KVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 60/363 (16%), Positives = 117/363 (32%), Gaps = 24/363 (6%)

Query: 220 ILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE 279
              L   ++   +     +L  +  LQ D    I  I + +     L  +  S+N L+  
Sbjct: 26  KTVLGKTNVTDTVSQT--DLDQVTTLQADRLG-IKSI-DGVEYLNNLTQINFSNNQLTDI 81

Query: 280 IPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQ 339
            P  L NL+ L  I M NN +    P+              N +      +  +     +
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLT----------NLTGLTLFNNQITDIDPLK 129

Query: 340 VHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEI 399
              + N++E    +I   S       L        + +            L  +  K   
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 400 PVQLCQLKEVRLIDLSHNNLSGHIPSC----LVNTALSGGHHEAVAPTSIWCGRASVYIS 455
              L +L  +  +  ++N +S   P      L   +L+G   + +   +       + ++
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 249

Query: 456 ACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGI 515
               S  AP  G  +  +             +    +  +L  N+   E  + I  L  +
Sbjct: 250 NNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 516 HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG 575
             L L  NN++   P   S+L +++ L  + N +       L  L  +      +N +S 
Sbjct: 310 TYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365

Query: 576 KIP 578
             P
Sbjct: 366 LTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 3e-07
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
             + +L  L ++  L L+NN    +     PL  L+KL               ++++P  
Sbjct: 232 KDIGTLASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGAN-----QISNISPLA 282

Query: 70  QLTSISL-SGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANN 128
            LT+++      +       + +  +L    L   N+S   P   + + T L  L  ANN
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANN 339

Query: 129 SLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNA 178
            +       + +  N+  L   +N      P+     L  +  L L+  A
Sbjct: 340 KVSDV--SSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 7e-16
 Identities = 53/266 (19%), Positives = 91/266 (34%), Gaps = 34/266 (12%)

Query: 135 RMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLE 194
           ++P     + A LD+ NN        +    L  L  L L  N  +   P +FA +  LE
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 195 RLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKK------------------ 236
           RL +S NQL  E+PE+M      L++       ++  +F+                    
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 237 -----FNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALE 291
                  +  L  +++     I  IP+ L     L  L+L  N ++      L  L+ L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTN-ITTIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 292 GIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEG-- 349
            + +  N++             L+ L L+NN +           +I+ V+L  N I    
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258

Query: 350 ----RLESIIHDSPYLVTLDLSYNRL 371
                             + L  N +
Sbjct: 259 SNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 50/315 (15%), Positives = 103/315 (32%), Gaps = 51/315 (16%)

Query: 250 NKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFC 309
           +  + ++P+ L        L L +N ++        NL  L  + + NN +    P  F 
Sbjct: 19  DLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 310 QLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369
            L  L+ L LS N +   LP       ++++ + +N+I    +S+ +    ++ ++L  N
Sbjct: 77  PLVKLERLYLSKNQL-KELPEKMPK-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134

Query: 370 RLH--GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCL 427
            L   G        + +L+Y+ +A   I          L E   + L  N ++    + L
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASL 191

Query: 428 VNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI 487
                                   +   A L          +      T ++   +    
Sbjct: 192 KG----------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHL--- 226

Query: 488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTF------SNLKQIES 541
                      N    ++P  +     I  + L +NN++      F      +       
Sbjct: 227 ----------NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Query: 542 LDLSYN-LLHGKIPP 555
           + L  N + + +I P
Sbjct: 277 VSLFSNPVQYWEIQP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 7e-13
 Identities = 48/313 (15%), Positives = 89/313 (28%), Gaps = 46/313 (14%)

Query: 240 TNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNN 299
            +   L L  NK              L  L L +N +S   P     L  LE + +  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 300 LEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSP 359
           L+         L  L++ +     +  ++ +  +   + ++  +  K  G          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 360 YLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 419
            L  + ++   +  +IP  +   P L  L L  N I       L  L  +  + LS N++
Sbjct: 151 KLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 420 SGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNM 479
           S      L NT                                       E      K +
Sbjct: 208 SAVDNGSLANTPHL-----------------------------------RELHLNNNKLV 232

Query: 480 SYYYQGRILTSMSGIDLSCNKLTG------EIPTQIGYLSGIHALNLSHNNLTGT--IPT 531
                      +  + L  N ++         P      +    ++L  N +      P+
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 292

Query: 532 TFSNLKQIESLDL 544
           TF  +    ++ L
Sbjct: 293 TFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 2e-12
 Identities = 55/262 (20%), Positives = 93/262 (35%), Gaps = 30/262 (11%)

Query: 196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGE 255
           +  SD  L  ++P+ +        +L L NN +         NL NL  L L  NK    
Sbjct: 15  VQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 256 IPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEG----------------------- 292
            P + +    L  LYLS N L     +    L  L                         
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 293 IRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLE 352
           +        G     F  +  L  + +++ +I  T+P    P  + ++HL  NKI     
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPP-SLTELHLDGNKITKVDA 188

Query: 353 SIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 412
           + +     L  L LS+N +       +   P L  L L +N +  ++P  L   K ++++
Sbjct: 189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 247

Query: 413 DLSHNNLSGHIPSCLVNTALSG 434
            L +NN+S    +       + 
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNT 269

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 42/239 (17%), Positives = 74/239 (30%), Gaps = 14/239 (5%)

Query: 358 SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 417
            P    LDL  N++          L  L+ L+L +N I    P     L ++  + LS N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 418 NLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTK 477
            L   +P  +          + +        +    +   L       +G         +
Sbjct: 90  QLK-ELPEKMPK------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 478 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLK 537
           N ++      +  +S I ++   +T  IP   G    +  L+L  N +T     +   L 
Sbjct: 143 NGAFQG----MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLN 195

Query: 538 QIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPF 596
            +  L LS+N +       L     L    +  N L       A     +      N  
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 51/282 (18%), Positives = 89/282 (31%), Gaps = 21/282 (7%)

Query: 20  SMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79
               L L NN   +I        NL  L T        ++    +  P  +L  + LS  
Sbjct: 32  DTALLDLQNNKITEIKDGD--FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 80  IDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIH 139
                  K      +L+  +     +     N L  N   +V L        G       
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENGAFQ 147

Query: 140 SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDIS 199
             + L+ + +++      IP  +    P L +L+L  N       +S   +  L +L +S
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 200 DNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIG----- 254
            N ++      +      L+ L L+NN L         +   +  + L  N         
Sbjct: 204 FNSISAVDNGSL-ANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSND 261

Query: 255 -EIPESLSKCYLLGGLYLSDNHLS-GEIP----RWLGNLSAL 290
              P   +K     G+ L  N +   EI     R +   +A+
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 8e-06
 Identities = 23/123 (18%), Positives = 40/123 (32%)

Query: 487 ILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 546
           +    + +DL  NK+T         L  +H L L +N ++   P  F+ L ++E L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 547 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSC 606
           N L          L  L V +     +   + +        E           +  +   
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 607 NHN 609
              
Sbjct: 149 MKK 151

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (137), Expect = 2e-09
 Identities = 45/444 (10%), Positives = 111/444 (25%), Gaps = 29/444 (6%)

Query: 143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG----SIPSSFADMKMLERLDI 198
           ++ +LD+           E+   L     + L            I S+      L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 199 SDNQLTGE----IPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIG 254
             N+L       + + + T    ++ L+L N  L G       +    +    + +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 255 EIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSAL 314
            + ++  +    G L         ++     + ++ E +            +        
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 315 KILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS 374
           +             P       +E   ++ +        +   +        S       
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 375 IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTAL-- 432
           +      L   +  L      +  I  + C      L             + L +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 433 -SGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI---- 487
                 E          ++  + +AC    S+        ++    N      G      
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 488 -----LTSMSGIDLSCNKLTGE----IPTQIGYLSGIHALNLSHNNLTGTIPTTFS---- 534
                 + +  + L+   ++      +   +     +  L+LS+N L             
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 535 -NLKQIESLDLSYNLLHGKIPPQL 557
                +E L L       ++  +L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 494 IDLSCNKLTGEIPTQI-GYLSGIHALNLSHNNLTG----TIPTTFSNLKQIESLDLSYNL 548
           +D+ C +L+     ++   L     + L    LT      I +       +  L+L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 549 LHGKIPPQLIVLNTLEVFKVAYNNLSG 575
           L       ++        K+   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 15/104 (14%)

Query: 134 FRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYL---PGLMDLNLSRNAFNGSIPSSFAD- 189
            +        L  L +++          +   L     L +L+LS N    +      + 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 190 ----MKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQ 229
                 +LE+L + D   + E+ +        L+ L     SL+
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 184 PSSFADMKMLERLDISDNQLTGEIPERMATG---CFSLKILALSNNSLQGHIFSK----- 235
                   +L  L ++D  ++      +A       SL+ L LSNN L      +     
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 236 KFNLTNLMRLQLDGNKFIGEIPESLSK 262
           +     L +L L    +  E+ + L  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 206 EIPERMATGCFSLKILALSNNSLQG----HIFSKKFNLTNLMRLQLDGNKFIGEIPESLS 261
           E+ + +      L++L L++  +       + +      +L  L L  N         L 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 262 K-----CYLLGGLYLSDNHLSGEIPRWLGNL 287
           +       LL  L L D + S E+   L  L
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 7/276 (2%)

Query: 293 IRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGR-L 351
           + +   NL   +         +       + +   L   FSP  ++ + LS + IE   L
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 352 ESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRL 411
             I+     L  L L   RL   I N + +   L  L L+      E  +Q       RL
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 412 IDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEET 471
            +L+ +          V  A++               +           R  P +   + 
Sbjct: 124 DELNLSWCFDFTEKH-VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 472 VQFTTKNMSYYYQGRILTSMSGIDLS-CNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIP 530
                     + +   L  +  + LS C  +  E   ++G +  +  L +      GT+ 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 531 TTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVF 566
                L     L ++ +       P +      E++
Sbjct: 243 LLKEALPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 38/276 (13%), Positives = 83/276 (30%), Gaps = 18/276 (6%)

Query: 146 TLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTG 205
           TLD++    H  +   +     G++     R+  +  +   F+  + ++ +D+S++ +  
Sbjct: 4   TLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 206 EIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYL 265
                + + C  L+ L+L    L   I +     +NL+RL L G     E          
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 266 LGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF 325
                L+ +       + +    A     +   NL G                       
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS--------------D 166

Query: 326 GTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSY-NRLHGSIPNRIDRLPQ 384
            +      P  +         ++           YL  L LS    +       +  +P 
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 385 LNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
           L  L +      G + +    L  +++       ++
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 34/233 (14%), Positives = 78/233 (33%), Gaps = 12/233 (5%)

Query: 99  DLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHI 158
           DL+  NL       LL     ++      + +         S   +  +D+SN+      
Sbjct: 6   DLTGKNLHPDVTGRLLSQG--VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVST 62

Query: 159 PVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQ-LTGEIPERMATGCFS 217
              I +    L +L+L     +  I ++ A    L RL++S     +    + + + C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 218 L---KILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDN 274
           L    +    + + +    +       + +L L G +   +  +  +       L   D 
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 275 H----LSGEIPRWLGNLSALEGIRMPN-NNLEGPIPIEFCQLSALKILDLSNN 322
                L  +  +    L+ L+ + +    ++     +E  ++  LK L +   
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 36/208 (17%), Positives = 65/208 (31%), Gaps = 8/208 (3%)

Query: 138 IHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLD 197
           +    +   ++         +P ++         L+LS N       ++      L +L+
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 198 ISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP 257
           +   +    + +    G   +      +++    +      L  L  L +  N+      
Sbjct: 62  LDRAE----LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 258 ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKIL 317
            +L     L  LYL  N L    P  L     LE + + NNNL          L  L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 318 DLSNNSIFGTLPSCFSPAHIEQVHLSKN 345
            L  NS++      F    +    L  N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 41/222 (18%), Positives = 63/222 (28%), Gaps = 19/222 (8%)

Query: 330 SCFSPAHIEQVHLSKNKIEGRLESIIHD-SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYL 388
                A   +V+  K      L ++  D       L LS N L+      +    +L  L
Sbjct: 5   EVSKVASHLEVNCDKR----NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 389 LLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCG 448
            L    +          L  +  +DLSHN L           AL+         TS+  G
Sbjct: 61  NLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 449 RASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ 508
                              +E  ++                 +  + L+ N LT      
Sbjct: 119 ALRGL-----------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 509 IGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 550
           +  L  +  L L  N+L  TIP  F     +    L  N   
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 38/244 (15%), Positives = 71/244 (29%), Gaps = 40/244 (16%)

Query: 355 IHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 414
           +      + ++     L  ++P  +        L L+ N +       L     +  ++L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 415 SHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQF 474
               L+                 +   P       +   + +        P      V F
Sbjct: 63  DRAELTKL-------------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 475 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFS 534
                      R L  +  + L  N+L    P  +     +  L+L++NNLT       +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 535 NLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGN 594
            L+ +++L L  N L+  IP      + L         L G                  N
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFA-----FLHG------------------N 205

Query: 595 PFLC 598
           P+LC
Sbjct: 206 PWLC 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 5/196 (2%)

Query: 238 NLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPN 297
            + + + +  D       +P  L K      L+LS+N L       L   + L  + +  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL-- 62

Query: 298 NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHD 357
           +  E         L  L  LDLS+N +        +   +  + +S N++       +  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 358 SPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 417
              L  L L  N L    P  +   P+L  L LA+N +       L  L+ +  + L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 418 NLSGHIPSCLVNTALS 433
           +L         +  L 
Sbjct: 183 SLYTIPKGFFGSHLLP 198

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 33/207 (15%), Positives = 53/207 (25%), Gaps = 10/207 (4%)

Query: 94  DLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNF 153
                +    NL+   P  L     +  +L L+ N L+      +  +  L  L++    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 154 FHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMAT 213
                       L  L       +                  +          +P     
Sbjct: 67  LTKLQVDGTLPVLGTLD-----LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 214 GCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSD 273
           G   L+ L L  N L+            L +L L  N         L+    L  L L +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 274 NHLSGEIPRWLGNLSALEGIRMPNNNL 300
           N L   IP+       L    +  N  
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 2/154 (1%)

Query: 100 LSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIP 159
           L+ LNL       L  + T  V+  L  +         +       T+   +      +P
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 160 VEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLK 219
           +     L  L +L L  N      P        LE+L +++N LT      +  G  +L 
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL-NGLENLD 175

Query: 220 ILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFI 253
            L L  NSL   I    F    L    L GN ++
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 4e-07
 Identities = 55/313 (17%), Positives = 94/313 (30%), Gaps = 16/313 (5%)

Query: 269 LYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTL 328
           L L++  LS  +P    +L +L       N+L   +P     L +L + + +  ++    
Sbjct: 43  LELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 329 PS--CFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLN 386
           P       ++ +   L + +    L+ I  D+  L  L      L               
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 387 YLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIW 446
              L            L +L ++ L   S    +  +        L            + 
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217

Query: 447 CGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIP 506
                      L  R        E  Q  T           L+ +       N  + EI 
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 277

Query: 507 TQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVF 566
           +       +  LN+S+N L   +P     L   E L  S+N L  ++P        L+  
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPEL---PQNLKQL 329

Query: 567 KVAYNNLSGKIPD 579
            V YN L  + PD
Sbjct: 330 HVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 55/318 (17%), Positives = 98/318 (30%), Gaps = 15/318 (4%)

Query: 5   INLLKTSLISLMHLI-SMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETES--- 60
           + L    L SL  L   +E L+ S N   ++P   + L +L         +         
Sbjct: 43  LELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 102

Query: 61  --HYNSLTPKFQLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNT 118
               N+   K      S    I                + +      +       L+N  
Sbjct: 103 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLP 162

Query: 119 NLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNA 178
            L  +   NNSL     +P+     +A  ++            + T       L    + 
Sbjct: 163 FLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL 222

Query: 179 FNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFN 238
                  +  D  + +  ++  +    ++ E + +G   L       N+    I S    
Sbjct: 223 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 282

Query: 239 LTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNN 298
             +L  L +  NK + E+P    +   L  L  S NHL+ E+P    NL  L    +  N
Sbjct: 283 PPSLEELNVSNNK-LIELPALPPR---LERLIASFNHLA-EVPELPQNLKQL---HVEYN 334

Query: 299 NLEGPIPIEFCQLSALKI 316
            L    P     +  L++
Sbjct: 335 PLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 14/136 (10%)

Query: 90  YHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDV 149
              +     +L            +    + L   L   N+     R       +L  L+V
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 150 SNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE 209
           SNN       +E+    P L  L  S N     +P      + L++L +  N L  E P+
Sbjct: 292 SNNKL-----IELPALPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD 341

Query: 210 RMATGCFSLKILALSN 225
                  S++ L +++
Sbjct: 342 IPE----SVEDLRMNS 353

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 2/116 (1%)

Query: 489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYN 547
              SG+  + +    +    +     +  L + +      +       L ++ +L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 548 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLS 603
            L    P        L    +++N L        Q  + +E    GNP  C   L 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 31/150 (20%), Positives = 44/150 (29%), Gaps = 10/150 (6%)

Query: 168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNS 227
           G   L  +R+             + L  L I + Q    +  R   G   L+ L +  + 
Sbjct: 9   GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 228 LQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLS-GEIPRWLGN 286
           L+            L RL L  N     +     +   L  L LS N L      RWL  
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 287 LSALEGIRMPNNNL--EGP-----IPIEFC 309
                   +P   L   G      +P   C
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNASC 156

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 8/140 (5%)

Query: 185 SSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMR 244
           + + +      LD+   ++   I   +         +  S+N +          L  L  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 245 LQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG----EIPRWLGNLSALEGIRMPNNNL 300
           L ++ N+              L  L L++N L      +    L +L+ L  +R P  N 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 301 EGPIPIEFCQLSALKILDLS 320
           +        ++  +++LD  
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 6/112 (5%)

Query: 500 KLTGEIPTQIGY---LSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 556
           KLT E+  Q            L+L    +   I    + L Q +++D S N +       
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 557 LIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSKSCNH 608
           L  L  L+   V  N +        Q      +    N  L           
Sbjct: 61  L--LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS 110

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 26/191 (13%), Positives = 69/191 (36%), Gaps = 14/191 (7%)

Query: 361 LVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
            +  +L    +  ++    + L  ++ ++  ++ IK    +Q   L  V  + L+ N L+
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLT 81

Query: 421 GHI------PSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQF 474
                        +    +     +           S+  +          + + E++  
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141

Query: 475 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFS 534
               ++       LT +  + L  N+++  +P  +  L+ +  L LS N+++       +
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALA 197

Query: 535 NLKQIESLDLS 545
            LK ++ L+L 
Sbjct: 198 GLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 29/209 (13%), Positives = 68/209 (32%), Gaps = 33/209 (15%)

Query: 158 IPVEIGTYLP-----GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMA 212
           +P  I            +  NL + +   ++  +  ++  ++++  +++ +      +  
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYL 67

Query: 213 TGCFSLKILALSNNSLQGHIFSKKFNLTNLMRL------------------QLDGNKFIG 254
               ++  L L+ N L              + L                   L       
Sbjct: 68  P---NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 255 EIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSAL 314
                L     L  LYL +N ++         L+ L+ + + +N +   +P     L+ L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 315 KILDLSNNSIFGTLPSCFSPAHIEQVHLS 343
           + L LS N I   L +     +++ + L 
Sbjct: 181 QNLYLSKNHI-SDLRALAGLKNLDVLELF 208

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 99  DLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHI 158
            L+H +L+    +  LE    +  L L++N L    R    +   L  L+V     +   
Sbjct: 4   HLAHKDLTV-LCH--LEQLLLVTHLDLSHNRL----RALPPALAALRCLEVLQASDNALE 56

Query: 159 PVEIGTYLPGLMDLNLSRNAFNG-SIPSSFADMKMLERLDISDNQLTGEIPER 210
            V+    LP L +L L  N     +          L  L++  N L  E   +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 9e-05
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 297 NNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIH 356
           + +L     +E  QL  +  LDLS+N +    P+  +   +E +  S N +E      + 
Sbjct: 7   HKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VA 62

Query: 357 DSPYLVTLDLSYNRL-HGSIPNRIDRLPQLNYLLLAHNYIKGE 398
           + P L  L L  NRL   +    +   P+L  L L  N +  E
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 196 LDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGE 255
           L ++   LT  +          +  L LS+N L+         L  L  L    +    E
Sbjct: 3   LHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVL--QASDNALE 56

Query: 256 IPESLSKCYLLGGLYLSDNHL-SGEIPRWLGNLSALEGIRMPNNNLEG 302
             + ++    L  L L +N L      + L +   L  + +  N+L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 219 KILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSG 278
           ++L L++  L   +      L  +  L L  N+     P   +   L       +   + 
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 279 EIPRWLGNLSALEGIRMPNNNLEG-PIPIEFCQLSALKILDLSNNSI 324
           +    L  L  L    + NN L+             L +L+L  NS+
Sbjct: 59  DGVANLPRLQEL---LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 8/120 (6%)

Query: 172 LNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGH 231
           L+L+      ++      + ++  LD+S N+L    P         L++L    +     
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVL--QASDNALE 56

Query: 232 IFSKKFNLTNLMRLQLDGNKFIG-EIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSAL 290
                 NL  L  L L  N+       + L  C  L  L L  N L  +       L+ +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 315 KILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS 374
           ++L L++  +   L        +  + LS N++     ++      L  L  S N L   
Sbjct: 1   RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENV 58

Query: 375 IPNRIDRLPQLNYLLLAHNYIKG-EIPVQLCQLKEVRLIDLSHNNLSG 421
                    Q   LLL +N ++       L     + L++L  N+L  
Sbjct: 59  DGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 122 MLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG 181
           +L LA+  L  +    +     +  LD+S+N      P      L  L  L + + + N 
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNA 54

Query: 182 SI-PSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQG 230
                  A++  L+ L + +N+L      +    C  L +L L  NSL  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 26/209 (12%), Positives = 58/209 (27%), Gaps = 12/209 (5%)

Query: 341 HLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 400
              K+ +         D   + TL      +  +I   +  L  L  L L  N I    P
Sbjct: 25  AAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLAP 80

Query: 401 VQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPS 460
           ++         +  +       I        L     +    T +        +   L  
Sbjct: 81  LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140

Query: 461 RSAPPMGKEETVQFTTKNMSYYYQGRIL----TSMSGIDLSCNKLTGEIPTQIGYLSGIH 516
            +        T        +            + ++ +    NK++   P  +  L  + 
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198

Query: 517 ALNLSHNNLTGTIPTTFSNLKQIESLDLS 545
            ++L +N ++   P   +N   +  + L+
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 32/216 (14%), Positives = 66/216 (30%), Gaps = 21/216 (9%)

Query: 10  TSLISLMHLISMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKF 69
           T  ++   L  +  L            ++E +  L+ L   + +    T+        K 
Sbjct: 32  TDTVTQADLDGITTLSAFGTGV----TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKI 87

Query: 70  QLTSISLSGYIDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNS 129
                        G   K +     L++     L  +       L   +NL +L L  N 
Sbjct: 88  TE-------LELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140

Query: 130 LFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFAD 189
           +     +   ++    ++  +       +       L  L  L    N  +   P   A 
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPL-----ANLSKLTTLKADDNKISDISP--LAS 193

Query: 190 MKMLERLDISDNQLTGEIPERMATGCFSLKILALSN 225
           +  L  + + +NQ++   P        +L I+ L+N
Sbjct: 194 LPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 32/227 (14%), Positives = 68/227 (29%), Gaps = 18/227 (7%)

Query: 166 LPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSN 225
           L   + +   ++    ++  + AD+  +  L      +T     +      +L  L L +
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQ---YLNNLIGLELKD 72

Query: 226 NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLG 285
           N +      K       + L  +  K +  I    S   L        +         L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 286 NLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKN 345
            L          + L G   +++  +   ++ DL+  +    L           +    N
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL---------TTLKADDN 183

Query: 346 KIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAH 392
           KI       +   P L+ + L  N++    P  +     L  + L +
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 23/209 (11%), Positives = 52/209 (24%), Gaps = 14/209 (6%)

Query: 361 LVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 420
            + +    + +  ++      L  +  L      +     VQ   L  +  ++L  N ++
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 421 GHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISA----CLPSRSAPPMGKEETVQFTT 476
              P   +                          +        +   P  G         
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 477 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNL 536
                     +    +   LS         T +  LS +  L    N ++   P   ++L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 537 KQIESLDLSYNLLHGKIP----PQLIVLN 561
             +  + L  N +    P      L ++ 
Sbjct: 195 PNLIEVHLKNNQISDVSPLANTSNLFIVT 223

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 3/163 (1%)

Query: 182 SIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTN 241
            IP           L ++DN+L     + +      L  L L  N L G   +     ++
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 242 LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE 301
           +  LQL  NK      +     + L  L L DN +S  +P    +L++L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 302 GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSK 344
               + +     L+   L+  +     PS      I+ +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 7e-05
 Identities = 28/225 (12%), Positives = 53/225 (23%), Gaps = 22/225 (9%)

Query: 350 RLESIIHDSP-YLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE 408
           ++  I  D P   + L     +L             L  + ++ N +   I   +     
Sbjct: 19  KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 409 VRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGK 468
                      +    +      L    +  ++ T I        I +            
Sbjct: 79  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 469 EETVQFTTKNMSYYYQGRIL------------------TSMSGIDLSCNKLTGEIPTQIG 510
                     +   ++  IL                            N L         
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 511 YLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP 555
             SG   L++S   +         NLK++ +    YNL   K+P 
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARST-YNL--KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 20/208 (9%), Positives = 45/208 (21%), Gaps = 1/208 (0%)

Query: 20  SMEKLILSNNHFFQIPISLEPLFNLSKLKTFDGEICAETESHYNSLTPKFQLTSISLSGY 79
           +  +L         I       F   +          E                      
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 80  IDGGTFPKFLYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIH 139
                 P+   +  +L+   +S+  +        + +   +++ +  N ++    R    
Sbjct: 90  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 149

Query: 140 SHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDIS 199
                + +   N      I                  N         F        LDIS
Sbjct: 150 GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 209

Query: 200 DNQLTGEIPERMATGCFSLKILALSNNS 227
             ++   +P         L+  +  N  
Sbjct: 210 RTRIH-SLPSYGLENLKKLRARSTYNLK 236

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 314 LKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRL-- 371
            + LDL        L +     +I+ V   ++ +   L  I  + P L++L+LS NRL  
Sbjct: 24  QQALDLKGLRSDPDLVAQ----NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 372 HGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPS 425
              + + + + P L  L L+ N +K E  +   +  ++  + L  N+LS     
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 13/146 (8%)

Query: 253 IGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLS 312
           + ++   +SK Y      L    L       L   +    +   ++     + I    + 
Sbjct: 9   VEQLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAAT-LRIIEENIP 65

Query: 313 ALKILDLSNNSIFGTLPSCFSPA---HIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYN 369
            L  L+LSNN ++             +++ ++LS N+++   E        L  L L  N
Sbjct: 66  ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125

Query: 370 RLHGSIPNR-------IDRLPQLNYL 388
            L  +  ++        +R P+L  L
Sbjct: 126 SLSDTFRDQSTYISAIRERFPKLLRL 151

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 2/116 (1%)

Query: 95  LKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFF 154
             +     L+L G   +  L      V+L   ++ +  + R+   +   L +L++SNN  
Sbjct: 19  RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNRL 77

Query: 155 HGHIPVEIG-TYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE 209
           +    +       P L  LNLS N               LE L +  N L+    +
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 217 SLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL 276
           S + L L        + +        + L    +     +         L  L LS+N L
Sbjct: 23  SQQALDLKGLRSDPDLVA----QNIDVVLNR-RSSMAATLRIIEENIPELLSLNLSNNRL 77

Query: 277 SG--EIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFS 333
               ++   +     L+ + +  N L+    ++  +   L+ L L  NS+  T     +
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 27/333 (8%), Positives = 77/333 (23%), Gaps = 39/333 (11%)

Query: 236 KFNLTNL-MRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGE----IPRWLGNLSAL 290
           +F++    ++L     +    +   L +   +  + LS N +  E    +   + +   L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 291 EGIRMPNN---NLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKI 347
           E     +     ++  IP     L    +     +++  +  +    A    +       
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 348 EGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK 407
                 + ++             L     N+  +       ++          ++     
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 408 EVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMG 467
                 L    +  +                             +     L         
Sbjct: 182 FQSHRLLHTVKMVQNGIRP---------------EGIEHLLLEGLAYCQELKVLDLQDNT 226

Query: 468 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIG------YLSGIHALNLS 521
                          +      ++  + L+   L+      +          G+  L L 
Sbjct: 227 FTHLGSSALAIALKSWP-----NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 281

Query: 522 HNNLTGTIPTT-----FSNLKQIESLDLSYNLL 549
           +N +      T        +  +  L+L+ N  
Sbjct: 282 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 29/292 (9%), Positives = 70/292 (23%), Gaps = 28/292 (9%)

Query: 171 DLNLSRNAFNG--SIPSSFADMKMLERLDISDNQLTGEIPERMATG---CFSLKILALSN 225
            L L         S+ +   +   ++ + +S N +  E    ++        L+I   S+
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 226 NS---LQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPR 282
                ++  I      L   +      +                   +LS +     +  
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 283 WLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHL 342
               L    G ++     E  +  +      L+ +    N +       ++        L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 343 SKNKIEGRLESIIHDSPYLVTLDLSYNRL--------------HGSIPNRIDRLPQLNYL 388
              K+             L+        L                ++   +   P L  L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 389 LLAHNYIKGEIPVQL------CQLKEVRLIDLSHNNLSGHIPSCLVNTALSG 434
            L    +       +       +   ++ + L +N +       L       
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	691
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.93

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.2e-29  Score=255.58  Aligned_cols=258  Identities=33%  Similarity=0.550  Sum_probs=200.6

Q ss_pred             CCCEEEccCCcCCC--cchhhhhcCCCCCEEecCC-CccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEE
Q 046382          265 LLGGLYLSDNHLSG--EIPRWLGNLSALEGIRMPN-NNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVH  341 (691)
Q Consensus       265 ~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~  341 (691)
                      +++.|+++++.+.+  .+|..++.+++|++|++++ |.+.+.+|..+.++++|++|+++                     
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls---------------------  109 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT---------------------  109 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE---------------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhc---------------------
Confidence            45556666655554  2345555555555555554 44444455555555555555554                     


Q ss_pred             ccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCC-CEEEccCCCCC
Q 046382          342 LSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV-RLIDLSHNNLS  420 (691)
Q Consensus       342 l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-~~L~l~~n~l~  420 (691)
                        +|++.+..+..+..++.|+.+++++|.+.+.+|..+..++.++++++++|.+.+.+|..+..+..+ +.+++++|+++
T Consensus       110 --~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         110 --HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             --EECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             --cccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence              455555555566677788888888888887888888888888899999888888888888777775 78889999888


Q ss_pred             CCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCe
Q 046382          421 GHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK  500 (691)
Q Consensus       421 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  500 (691)
                      +..|..+..                                                           .....++++++.
T Consensus       188 ~~~~~~~~~-----------------------------------------------------------l~~~~l~l~~~~  208 (313)
T d1ogqa_         188 GKIPPTFAN-----------------------------------------------------------LNLAFVDLSRNM  208 (313)
T ss_dssp             EECCGGGGG-----------------------------------------------------------CCCSEEECCSSE
T ss_pred             ccccccccc-----------------------------------------------------------cccccccccccc
Confidence            777765443                                                           234568999999


Q ss_pred             eeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCC
Q 046382          501 LTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR  580 (691)
Q Consensus       501 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  580 (691)
                      ..+.+|..+..+++++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|+.+..+++|++|+|++|+|+|.+|+.
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            999999999999999999999999987655 6889999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcCcCcccCCCCCCCCCCCCCC
Q 046382          581 AQFSTFEEDSYEGNPFLCGKPLSKSC  606 (691)
Q Consensus       581 ~~~~~~~~~~~~~Np~~c~~~l~~~c  606 (691)
                      ..+..++.+++.||+.+|+.|+. .|
T Consensus       288 ~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccCCCCCHHHhCCCccccCCCCC-CC
Confidence            88899999999999999998764 44

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.5e-27  Score=246.21  Aligned_cols=356  Identities=21%  Similarity=0.264  Sum_probs=191.5

Q ss_pred             EccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCc
Q 046382           99 DLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNA  178 (691)
Q Consensus        99 ~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~  178 (691)
                      .++.+.+++.+..   +.+.+|++|+++++++...  ..+..+++|++|++++|+++ .++.  .+.+++|++|++++|.
T Consensus        28 ~l~~~~~~~~~~~---~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~   99 (384)
T d2omza2          28 VLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQ   99 (384)
T ss_dssp             HTTCSSTTSEECH---HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSC
T ss_pred             HhCCCCCCCccCH---HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCcccccccccccc
Confidence            3444444444332   3455667777777666543  24556667777777777666 4442  2336677777777777


Q ss_pred             ccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCc
Q 046382          179 FNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPE  258 (691)
Q Consensus       179 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  258 (691)
                      +.+. + .++++++|+.|+++++.++ .++..  .....+.......+.+.....................     ....
T Consensus       100 i~~i-~-~l~~l~~L~~L~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~  169 (384)
T d2omza2         100 IADI-T-PLANLTNLTGLTLFNNQIT-DIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLK  169 (384)
T ss_dssp             CCCC-G-GGTTCTTCCEEECCSSCCC-CCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCG
T ss_pred             cccc-c-ccccccccccccccccccc-ccccc--ccccccccccccccccccccccccccccccccccccc-----chhh
Confidence            6643 2 2666777777777777665 33321  2345556666665555433222111111111111111     1111


Q ss_pred             cccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCccc
Q 046382          259 SLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIE  338 (691)
Q Consensus       259 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~  338 (691)
                      .+.............+...  .......+++++.+++++|.+++..+  +...++|++|+++                  
T Consensus       170 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~------------------  227 (384)
T d2omza2         170 PLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLN------------------  227 (384)
T ss_dssp             GGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECC------------------
T ss_pred             hhccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECC------------------
Confidence            2222333333333333322  12233444455555555554443322  2233444444444                  


Q ss_pred             EEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCC
Q 046382          339 QVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNN  418 (691)
Q Consensus       339 ~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  418 (691)
                           +|.+++.  ..+..+++|+.+++++|.+++..  .+..+++|++|++++|++++..  .+..++.++.+++++|.
T Consensus       228 -----~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~  296 (384)
T d2omza2         228 -----GNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQ  296 (384)
T ss_dssp             -----SSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSC
T ss_pred             -----CCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--ccccccccccccccccc
Confidence                 4444432  23445566666666666665432  2555666666666666665432  35566667777777766


Q ss_pred             CCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCC
Q 046382          419 LSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSC  498 (691)
Q Consensus       419 l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  498 (691)
                      +.+ ++. +                                                          ..+++++.|++++
T Consensus       297 l~~-~~~-~----------------------------------------------------------~~~~~l~~L~ls~  316 (384)
T d2omza2         297 LED-ISP-I----------------------------------------------------------SNLKNLTYLTLYF  316 (384)
T ss_dssp             CSC-CGG-G----------------------------------------------------------GGCTTCSEEECCS
T ss_pred             ccc-ccc-c----------------------------------------------------------chhcccCeEECCC
Confidence            652 111 1                                                          1145677777777


Q ss_pred             CeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCC
Q 046382          499 NKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN  571 (691)
Q Consensus       499 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  571 (691)
                      |++++..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       317 n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         317 NNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            7776433  26677778888888887773 33 47777888888888888776544  677778888888776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=4.1e-27  Score=244.56  Aligned_cols=339  Identities=23%  Similarity=0.252  Sum_probs=212.0

Q ss_pred             CCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEc
Q 046382          168 GLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQL  247 (691)
Q Consensus       168 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  247 (691)
                      +|++|++++++|+..  +.++.+++|++|++++|+++ .++.  +.++++|++|++++|++.+..  .+..+++|+.|++
T Consensus        45 ~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~  117 (384)
T d2omza2          45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL  117 (384)
T ss_dssp             TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--ccccccccccccc
Confidence            444444444444421  23444444444444444444 3332  234444444444444444321  2444555555555


Q ss_pred             cCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCccc
Q 046382          248 DGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIFGT  327 (691)
Q Consensus       248 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~  327 (691)
                      +++.+.+..+  ......+.......+.+.....................     .....+.............|... .
T Consensus       118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~  189 (384)
T d2omza2         118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKVS-D  189 (384)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCCC-C
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccccc-c
Confidence            5554443211  22233444444444444322221111111111111111     11122333444444555444432 2


Q ss_pred             CCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCC
Q 046382          328 LPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK  407 (691)
Q Consensus       328 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  407 (691)
                      ......+++++.+++++|.+++..+  ...+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..  .+..++
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~  263 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLT  263 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred             ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccc
Confidence            2222356777788888887776644  45678999999999999853  46788999999999999998654  478899


Q ss_pred             CCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceecccc
Q 046382          408 EVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRI  487 (691)
Q Consensus       408 ~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (691)
                      +|+++++++|++++..+  +.                                                          .
T Consensus       264 ~L~~L~l~~~~l~~~~~--~~----------------------------------------------------------~  283 (384)
T d2omza2         264 KLTELKLGANQISNISP--LA----------------------------------------------------------G  283 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GT----------------------------------------------------------T
T ss_pred             cCCEeeccCcccCCCCc--cc----------------------------------------------------------c
Confidence            99999999999874222  11                                                          1


Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      ++.++.+++++|.+++  ...+..+++++.|++++|++++..+  +..+++|++|++++|++++ ++ .+..+++|++|+
T Consensus       284 ~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~  357 (384)
T d2omza2         284 LTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLS  357 (384)
T ss_dssp             CTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEE
T ss_pred             cccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEE
Confidence            5678899999999985  3458889999999999999996543  8899999999999999985 33 689999999999


Q ss_pred             ccCCcccccCCCCCCCCCcCcCcccCC
Q 046382          568 VAYNNLSGKIPDRAQFSTFEEDSYEGN  594 (691)
Q Consensus       568 l~~N~l~~~~p~~~~~~~~~~~~~~~N  594 (691)
                      +++|++++..| ...++.++.+++++|
T Consensus       358 l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         358 AGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            99999998765 566788888888887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=3.1e-28  Score=245.11  Aligned_cols=253  Identities=31%  Similarity=0.496  Sum_probs=189.0

Q ss_pred             CCCCEEEccCCcCcc--cCCccccCCCCCCEEEccC-CcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCE
Q 046382          240 TNLMRLQLDGNKFIG--EIPESLSKCYLLGGLYLSD-NHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKI  316 (691)
Q Consensus       240 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  316 (691)
                      .+++.|+|+++.+.+  .+|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|++.+..+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468999999999987  4789999999999999997 7898899999999999999999999999888888888888888


Q ss_pred             EEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCc-cEEecccCcC
Q 046382          317 LDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQL-NYLLLAHNYI  395 (691)
Q Consensus       317 L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L-~~L~L~~n~i  395 (691)
                      +++++|.+.+.++                       ..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       130 l~l~~N~~~~~~p-----------------------~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         130 LDFSYNALSGTLP-----------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EECCSSEEESCCC-----------------------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             cccccccccccCc-----------------------hhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            8888877654433                       344555666666666666666666666665554 6666777777


Q ss_pred             cccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEE
Q 046382          396 KGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFT  475 (691)
Q Consensus       396 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (691)
                      ++..+..+..+..+ .++++++...+.+|..+..                                              
T Consensus       187 ~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~----------------------------------------------  219 (313)
T d1ogqa_         187 TGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGS----------------------------------------------  219 (313)
T ss_dssp             EEECCGGGGGCCCS-EEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred             cccccccccccccc-ccccccccccccccccccc----------------------------------------------
Confidence            66666666555433 5677776666555543322                                              


Q ss_pred             ecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCc
Q 046382          476 TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP  555 (691)
Q Consensus       476 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  555 (691)
                                  +++++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|..|+++++|++|||++|+++|.+|+
T Consensus       220 ------------~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         220 ------------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             ------------TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ------------ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence                        4567777777777775444 567777888888888888877888888888888888888888877774


Q ss_pred             ccccCCCCCeEEccCCc-cccc
Q 046382          556 QLIVLNTLEVFKVAYNN-LSGK  576 (691)
Q Consensus       556 ~l~~l~~L~~L~l~~N~-l~~~  576 (691)
                       +..+++|+.+++++|+ +.|.
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEEST
T ss_pred             -cccCCCCCHHHhCCCccccCC
Confidence             5667788888888887 4543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.8e-24  Score=213.32  Aligned_cols=266  Identities=19%  Similarity=0.244  Sum_probs=165.6

Q ss_pred             CCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccC
Q 046382          242 LMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSN  321 (691)
Q Consensus       242 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  321 (691)
                      .+.++-++.+++ .+|..+.  +.+++|++++|+++...+.+|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            445555555555 3444442  4567777777777655555667777777777777777766666677777777777777


Q ss_pred             CcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCC--CcchhhcCCCCccEEecccCcCcccC
Q 046382          322 NSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHG--SIPNRIDRLPQLNYLLLAHNYIKGEI  399 (691)
Q Consensus       322 n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~  399 (691)
                      |++......  ..+.++.|.+.+|.+.+..+..+.....++.++...|....  ..+..+..+++|+++++++|++.. +
T Consensus        89 n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l  165 (305)
T d1xkua_          89 NQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I  165 (305)
T ss_dssp             SCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred             CccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-c
Confidence            776643322  23466777777777776666666666777777777665432  223455666777777777777663 3


Q ss_pred             CcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCc
Q 046382          400 PVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNM  479 (691)
Q Consensus       400 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (691)
                      +..+  +++|+.|++++|..++..+..+..                                                  
T Consensus       166 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~--------------------------------------------------  193 (305)
T d1xkua_         166 PQGL--PPSLTELHLDGNKITKVDAASLKG--------------------------------------------------  193 (305)
T ss_dssp             CSSC--CTTCSEEECTTSCCCEECTGGGTT--------------------------------------------------
T ss_pred             Cccc--CCccCEEECCCCcCCCCChhHhhc--------------------------------------------------
Confidence            3332  466777777777666444443322                                                  


Q ss_pred             cceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCccc--
Q 046382          480 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL--  557 (691)
Q Consensus       480 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l--  557 (691)
                              ++.+++|++++|.+++..+..+.++++|++|+|++|+|+ .+|.+|..+++|+.|+|++|+|+.+....|  
T Consensus       194 --------~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         194 --------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             --------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             --------cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccC
Confidence                    455666777777777666666677777777777777776 446667777777777777777764432222  


Q ss_pred             ----ccCCCCCeEEccCCccc
Q 046382          558 ----IVLNTLEVFKVAYNNLS  574 (691)
Q Consensus       558 ----~~l~~L~~L~l~~N~l~  574 (691)
                          ..+++|+.|++++|+++
T Consensus       265 ~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         265 PGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SSCCTTSCCCSEEECCSSSSC
T ss_pred             cchhcccCCCCEEECCCCcCc
Confidence                33456666666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1e-23  Score=210.90  Aligned_cols=243  Identities=22%  Similarity=0.308  Sum_probs=154.8

Q ss_pred             ccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEE
Q 046382          143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILA  222 (691)
Q Consensus       143 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  222 (691)
                      ..++++-++.+++ .+|..+.   +++++|++++|+|+...+.+|.++++|++|++++|.+. .++...+..+++|+.|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            3455666665665 5565442   35666666666665444445566666666666666655 44333334455555555


Q ss_pred             cccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccC-
Q 046382          223 LSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLE-  301 (691)
Q Consensus       223 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-  301 (691)
                      +++|+++..                         |..  ....++.|++.+|.+.+..+..+.....+..+....+... 
T Consensus        86 l~~n~l~~l-------------------------~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~  138 (305)
T d1xkua_          86 LSKNQLKEL-------------------------PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  138 (305)
T ss_dssp             CCSSCCSBC-------------------------CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             ccCCccCcC-------------------------ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccc
Confidence            555554432                         211  1234555555555555444444555555666666555332 


Q ss_pred             -CCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhc
Q 046382          302 -GPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRID  380 (691)
Q Consensus       302 -~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~  380 (691)
                       ...+..+..+++|+.+++++|.+......  .++++++|++++|......+..+..++.++.|++++|.+.+..+.++.
T Consensus       139 ~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         139 SGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             cCCCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccc
Confidence             22334566677777888877776643222  257788888888888877777888888888888888888877777888


Q ss_pred             CCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCC
Q 046382          381 RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS  420 (691)
Q Consensus       381 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  420 (691)
                      ++++|++|++++|+++ .+|.++..+++|++|++++|+|+
T Consensus       217 ~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         217 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            8888888888888887 45678888888888888888886

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.6e-24  Score=211.63  Aligned_cols=211  Identities=20%  Similarity=0.202  Sum_probs=125.6

Q ss_pred             CcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecc-cCcCcccCCcCCCCCCCCCEEE
Q 046382          335 AHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLA-HNYIKGEIPVQLCQLKEVRLID  413 (691)
Q Consensus       335 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~  413 (691)
                      +++++|++++|+++.+.+..|.++++|+.|++++|.+....+..+..++.++.+... .+.++...+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            445555555555555555556666666666666666655545555555555555443 3444444455566666666666


Q ss_pred             ccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccce
Q 046382          414 LSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSG  493 (691)
Q Consensus       414 l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  493 (691)
                      +++|.+....+..+..                                                          .++|+.
T Consensus       112 l~~n~~~~~~~~~~~~----------------------------------------------------------~~~L~~  133 (284)
T d1ozna_         112 LDRCGLQELGPGLFRG----------------------------------------------------------LAALQY  133 (284)
T ss_dssp             CTTSCCCCCCTTTTTT----------------------------------------------------------CTTCCE
T ss_pred             cCCcccccccccccch----------------------------------------------------------hcccch
Confidence            6666554222211111                                                          345666


Q ss_pred             EEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcc
Q 046382          494 IDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL  573 (691)
Q Consensus       494 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  573 (691)
                      +++++|.+++..+..|..+++|++|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++|++++|++
T Consensus       134 l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             hhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence            66666666655555566666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cccCCC-CCCCCCcCcCcccCCCCCCCCCCC
Q 046382          574 SGKIPD-RAQFSTFEEDSYEGNPFLCGKPLS  603 (691)
Q Consensus       574 ~~~~p~-~~~~~~~~~~~~~~Np~~c~~~l~  603 (691)
                      .+..|. ......++.++++||||.|+|++.
T Consensus       214 ~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         214 SALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccccccccccccccCEEEecCCCCCCCccch
Confidence            655543 334455666677777777877653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.4e-24  Score=206.90  Aligned_cols=116  Identities=23%  Similarity=0.238  Sum_probs=71.1

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      +++|+.|++++|.+.+..+..+..+.++++|++++|.++...+..+..+++|+.|++++|++++..++.|..+++|++|+
T Consensus        99 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~  178 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceee
Confidence            34455555555555544455555566666666666666655555566666666666666666655555666666666666


Q ss_pred             ccCCcccccCCCCCCCCCcCcCcccCCCCCCCCCCC
Q 046382          568 VAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLS  603 (691)
Q Consensus       568 l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~  603 (691)
                      |++|+|+...+.......++.++++||||.|+|.+.
T Consensus       179 Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~~~  214 (266)
T d1p9ag_         179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEIL  214 (266)
T ss_dssp             CCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGH
T ss_pred             cccCCCcccChhHCCCCCCCEEEecCCCCCCCcchH
Confidence            666666633223444556666777888899998653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=207.88  Aligned_cols=222  Identities=23%  Similarity=0.243  Sum_probs=128.3

Q ss_pred             EEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEcc-C
Q 046382           98 ADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS-R  176 (691)
Q Consensus        98 L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~-~  176 (691)
                      ++.++++++ .+|..+   .+++++|+|++|+++...+..|.++++|++|++++|++. .++...+..++.++++... .
T Consensus        16 v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccc
Confidence            344444444 444432   234555566665555555455555556666666665555 3444444444555555443 3


Q ss_pred             CcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccC
Q 046382          177 NAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEI  256 (691)
Q Consensus       177 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  256 (691)
                      +.++...+..|+++++|++|++++|.+. .++...+....+|+.+++++|.+++..+..+..+++|+.|++++|++.+..
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            4444444555666666666666666655 444444455556666666666666555555555666666666666666555


Q ss_pred             CccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccCCcCc
Q 046382          257 PESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSNNSIF  325 (691)
Q Consensus       257 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~  325 (691)
                      +..+..+++|+.+++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|++.
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            566666666666666666666555666666666666666666666666666666666666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.5e-22  Score=193.49  Aligned_cols=202  Identities=22%  Similarity=0.232  Sum_probs=166.6

Q ss_pred             CCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCCCCccEEe
Q 046382          310 QLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLL  389 (691)
Q Consensus       310 ~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  389 (691)
                      ....+.+++.+++.++..++..  ++++++|+|++|+++++.+..|..+++|++|++++|+++. ++ .++.+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            3455666777777777543332  3678889999999888888888999999999999999883 43 357789999999


Q ss_pred             cccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCc
Q 046382          390 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKE  469 (691)
Q Consensus       390 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (691)
                      +++|+++ ..+..+..+++|+.|++++|.+.+..+..+.                                         
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----------------------------------------  121 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR-----------------------------------------  121 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTT-----------------------------------------
T ss_pred             ccccccc-ccccccccccccccccccccccceeeccccc-----------------------------------------
Confidence            9999998 4566788899999999999988643332221                                         


Q ss_pred             ccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccc
Q 046382          470 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  549 (691)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  549 (691)
                                       .+.++++|++++|.++...+..+..+++|+.|++++|++++..++.|..+++|++|||++|+|
T Consensus       122 -----------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         122 -----------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             -----------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             -----------------cccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCC
Confidence                             157889999999999977788888999999999999999988888999999999999999999


Q ss_pred             cccCCcccccCCCCCeEEccCCcccc
Q 046382          550 HGKIPPQLIVLNTLEVFKVAYNNLSG  575 (691)
Q Consensus       550 ~~~~p~~l~~l~~L~~L~l~~N~l~~  575 (691)
                      + .+|+.+..+++|+.|+|++|++.+
T Consensus       185 ~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         185 Y-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             C-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             c-ccChhHCCCCCCCEEEecCCCCCC
Confidence            9 788888899999999999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=1.3e-18  Score=177.49  Aligned_cols=54  Identities=30%  Similarity=0.505  Sum_probs=27.2

Q ss_pred             cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCcccc
Q 046382          489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  550 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  550 (691)
                      ++|++|+|++|+++ .+|.   .+++|+.|+|++|+|+ .+|..   +++|++|++++|+++
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence            45555555555555 3332   2345555555555555 33321   344555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-21  Score=207.41  Aligned_cols=379  Identities=19%  Similarity=0.125  Sum_probs=206.2

Q ss_pred             ccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccc----cCchhhhCCCCCCEEeccccccccccchhHhhc----
Q 046382          143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNG----SIPSSFADMKMLERLDISDNQLTGEIPERMATG----  214 (691)
Q Consensus       143 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----  214 (691)
                      +|++||+++|++++..-..+...++++++|+|++|+++.    .++..+..+++|++|++++|.+++.....+...    
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            456666666666533223333335566666666666552    223345566666666666666642211122221    


Q ss_pred             CCCCCEEEcccccCCccC----cccccCCCCCCEEEccCCcCcccCCccc-----cCCCCCCEEEccCCcCCCc----ch
Q 046382          215 CFSLKILALSNNSLQGHI----FSKKFNLTNLMRLQLDGNKFIGEIPESL-----SKCYLLGGLYLSDNHLSGE----IP  281 (691)
Q Consensus       215 l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~  281 (691)
                      ..+|++|++++|++++..    +..+..+++|++|++++|.+.......+     ...................    ..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            235666666666665432    2334456667777776666543211111     1112233333333332211    11


Q ss_pred             hhhhcCCCCCEEecCCCccCCCcc----hhh-cCCCCCCEEEccCCcCcccCCC-----CCCCCcccEEEccCCcccc--
Q 046382          282 RWLGNLSALEGIRMPNNNLEGPIP----IEF-CQLSALKILDLSNNSIFGTLPS-----CFSPAHIEQVHLSKNKIEG--  349 (691)
Q Consensus       282 ~~l~~l~~L~~L~l~~n~~~~~~~----~~~-~~l~~L~~L~L~~n~i~~~~~~-----~~~~~~L~~L~l~~n~i~~--  349 (691)
                      ..+.....++.+.++++.......    ..+ ........+++..+.+......     ....+.++.+.+.+|.+..  
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            223445667777777665432110    111 1223455666666654321100     1134667777777776542  


Q ss_pred             ---ccccccCCCCCccEEeccCCCCCCCc----chhhcCCCCccEEecccCcCcccCCcC-----CCCCCCCCEEEccCC
Q 046382          350 ---RLESIIHDSPYLVTLDLSYNRLHGSI----PNRIDRLPQLNYLLLAHNYIKGEIPVQ-----LCQLKEVRLIDLSHN  417 (691)
Q Consensus       350 ---~~~~~~~~~~~L~~L~ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~-----~~~l~~L~~L~l~~n  417 (691)
                         ...........++.+++++|.+....    ...+...+.++.+++++|.++......     ......|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               22334455677888888888776422    223455778888888888876322211     123457888888888


Q ss_pred             CCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcC
Q 046382          418 NLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLS  497 (691)
Q Consensus       418 ~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  497 (691)
                      .++......+....                                                      ...++|++|||+
T Consensus       323 ~l~~~~~~~l~~~~------------------------------------------------------~~~~~L~~L~Ls  348 (460)
T d1z7xw1         323 SFTAACCSHFSSVL------------------------------------------------------AQNRFLLELQIS  348 (460)
T ss_dssp             CCBGGGHHHHHHHH------------------------------------------------------HHCSSCCEEECC
T ss_pred             chhhhhhhhccccc------------------------------------------------------ccccchhhhhee
Confidence            77643322222110                                                      114578888999


Q ss_pred             CCeeeec----cchhhh-cccCCCeEeCCCCcCCcc----cchhhcCCCcCCEEeCCCccccccCCccc----c-cCCCC
Q 046382          498 CNKLTGE----IPTQIG-YLSGIHALNLSHNNLTGT----IPTTFSNLKQIESLDLSYNLLHGKIPPQL----I-VLNTL  563 (691)
Q Consensus       498 ~n~l~~~----~~~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L  563 (691)
                      +|++++.    ++..+. ..+.|++|+|++|+|+..    ++..+...++|++|||++|+++......+    . ....|
T Consensus       349 ~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L  428 (460)
T d1z7xw1         349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL  428 (460)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCC
T ss_pred             eecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCcc
Confidence            8888643    223332 356788999999988742    44556677889999999998875433322    2 23468


Q ss_pred             CeEEccCCcccc
Q 046382          564 EVFKVAYNNLSG  575 (691)
Q Consensus       564 ~~L~l~~N~l~~  575 (691)
                      +.|++.+|++..
T Consensus       429 ~~l~l~~~~~~~  440 (460)
T d1z7xw1         429 EQLVLYDIYWSE  440 (460)
T ss_dssp             CEEECTTCCCCH
T ss_pred             CEEECCCCCCCH
Confidence            888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.6e-21  Score=207.10  Aligned_cols=78  Identities=15%  Similarity=0.070  Sum_probs=50.8

Q ss_pred             cccceEEcCCCeeeec----cchhhhcccCCCeEeCCCCcCCcccchh----hc-CCCcCCEEeCCCccccccCCccc--
Q 046382          489 TSMSGIDLSCNKLTGE----IPTQIGYLSGIHALNLSHNNLTGTIPTT----FS-NLKQIESLDLSYNLLHGKIPPQL--  557 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~-~l~~L~~L~Ls~N~l~~~~p~~l--  557 (691)
                      +.|++|+|++|.+++.    ++..+..+++|++|+|++|+|+......    +. +.+.|+.|++++|.+....+..+  
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~  448 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  448 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHH
Confidence            4577788888877642    3445667788888888888887432222    22 33478999999998875544433  


Q ss_pred             --ccCCCCCeE
Q 046382          558 --IVLNTLEVF  566 (691)
Q Consensus       558 --~~l~~L~~L  566 (691)
                        ...|+|+++
T Consensus       449 l~~~~~~l~~~  459 (460)
T d1z7xw1         449 LEKDKPSLRVI  459 (460)
T ss_dssp             HHHHCTTSEEE
T ss_pred             HHHhCCCCEEe
Confidence              345666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=1.3e-17  Score=169.92  Aligned_cols=303  Identities=26%  Similarity=0.330  Sum_probs=160.9

Q ss_pred             ccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEE
Q 046382          143 NLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILA  222 (691)
Q Consensus       143 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  222 (691)
                      ++++|+|+++.++ .+|.    .+++|++|++++|+++ .+|..   ..+|++|++++|+++ .++.    -.+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hcccccccc
Confidence            4566666666665 5553    1345666666666665 34433   235566666666555 3332    012355555


Q ss_pred             cccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCC
Q 046382          223 LSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEG  302 (691)
Q Consensus       223 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  302 (691)
                      +++|.+....  .++.+++|+.|+++++.                        +.....    ....+..+.+..+....
T Consensus       105 L~~n~l~~lp--~~~~l~~L~~L~l~~~~------------------------~~~~~~----~~~~l~~l~~~~~~~~~  154 (353)
T d1jl5a_         105 VSNNQLEKLP--ELQNSSFLKIIDVDNNS------------------------LKKLPD----LPPSLEFIAAGNNQLEE  154 (353)
T ss_dssp             CCSSCCSSCC--CCTTCTTCCEEECCSSC------------------------CSCCCC----CCTTCCEEECCSSCCSS
T ss_pred             cccccccccc--chhhhccceeecccccc------------------------cccccc----ccccccchhhccccccc
Confidence            5555544321  12344444555444444                        332111    12333444444433321


Q ss_pred             CcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcCC
Q 046382          303 PIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDRL  382 (691)
Q Consensus       303 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~l  382 (691)
                        ...+..++.++.+++++|........   ....+.+...++.+...  ..+..++.|+.+++++|.... .+.   ..
T Consensus       155 --~~~l~~l~~l~~L~l~~n~~~~~~~~---~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~~-~~~---~~  223 (353)
T d1jl5a_         155 --LPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKT-LPD---LP  223 (353)
T ss_dssp             --CCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS-CCS---CC
T ss_pred             --cccccccccceecccccccccccccc---ccccccccccccccccc--ccccccccccccccccccccc-ccc---cc
Confidence              12334455555666655554422111   12223344444433322  124456667777777766552 222   23


Q ss_pred             CCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCcccCCCcccccCcccccccccCCCC
Q 046382          383 PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAVAPTSIWCGRASVYISACLPSRS  462 (691)
Q Consensus       383 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (691)
                      .++..+.+.++.+... +   ...+.+...++..+.+.+. +.                                     
T Consensus       224 ~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~l-~~-------------------------------------  261 (353)
T d1jl5a_         224 PSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSGL-SE-------------------------------------  261 (353)
T ss_dssp             TTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSEE-SC-------------------------------------
T ss_pred             cccccccccccccccc-c---ccccccccccccccccccc-cc-------------------------------------
Confidence            4566666666666521 1   1234555566555544310 00                                     


Q ss_pred             CCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEE
Q 046382          463 APPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESL  542 (691)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  542 (691)
                                              ........++..+.+.+. +   ..+++|++|+|++|+|+ .+|.   .+++|+.|
T Consensus       262 ------------------------l~~~~~~~~~~~~~~~~~-~---~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L  309 (353)
T d1jl5a_         262 ------------------------LPPNLYYLNASSNEIRSL-C---DLPPSLEELNVSNNKLI-ELPA---LPPRLERL  309 (353)
T ss_dssp             ------------------------CCTTCCEEECCSSCCSEE-C---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred             ------------------------ccchhcccccccCccccc-c---ccCCCCCEEECCCCccC-cccc---ccCCCCEE
Confidence                                    012344566677766632 2   34678999999999998 5664   36789999


Q ss_pred             eCCCccccccCCcccccCCCCCeEEccCCcccccCCC
Q 046382          543 DLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       543 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  579 (691)
                      +|++|+|+ .+|+.   +++|+.|++++|+++. +|.
T Consensus       310 ~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~-lp~  341 (353)
T d1jl5a_         310 IASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPD  341 (353)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CCC
T ss_pred             ECCCCcCC-ccccc---cCCCCEEECcCCcCCC-CCc
Confidence            99999998 55653   4689999999999974 554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=2.6e-18  Score=157.94  Aligned_cols=181  Identities=20%  Similarity=0.272  Sum_probs=117.5

Q ss_pred             cEEeccCCCCCCCcchhhcCCCCccEEecccCcCcc-cCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCCccc
Q 046382          362 VTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKG-EIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHHEAV  440 (691)
Q Consensus       362 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~~  440 (691)
                      +.++.++++++ .+|..+.  +++++|+|++|+|++ ..+..|..+++|+.|++++|.+.+..+..+..           
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~-----------   76 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-----------
Confidence            45666666666 4454432  467777777777764 33455667777777777777776544443322           


Q ss_pred             CCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCeEeC
Q 046382          441 APTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNL  520 (691)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  520 (691)
                                                                     +++|++|+|++|+++...|..|.++++|++|+|
T Consensus        77 -----------------------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          77 -----------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             -----------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             -----------------------------------------------ccccceeeeccccccccCHHHHhCCCccccccc
Confidence                                                           466777777777777667777888888888888


Q ss_pred             CCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCCCCCCCCcCcCcccCCCCCCCC
Q 046382          521 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGK  600 (691)
Q Consensus       521 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~  600 (691)
                      ++|+|+++.|+.|..+++|++|+|++|++....+.. .-...++.+.+..|.+++..|.  .+......++..|.+.|.+
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~--~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSST--TTTTSBGGGSCTTTCCCCC
T ss_pred             CCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCCh--hhcCCEeeecCHhhCcCCC
Confidence            888888777778888888888888888876433211 1112355566677777766554  2334555677888888876


Q ss_pred             CCCCCC
Q 046382          601 PLSKSC  606 (691)
Q Consensus       601 ~l~~~c  606 (691)
                      +-...|
T Consensus       187 ~~~~g~  192 (192)
T d1w8aa_         187 ENSEGC  192 (192)
T ss_dssp             C---CC
T ss_pred             CCCCCC
Confidence            644333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.8e-18  Score=162.43  Aligned_cols=215  Identities=15%  Similarity=0.133  Sum_probs=109.7

Q ss_pred             CEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEcc
Q 046382           96 KNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS  175 (691)
Q Consensus        96 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~  175 (691)
                      +.++.++..++ .+|+.+   .+++++|++++|++....+..|.++++|++|++++|.+...++...+..+++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45566665555 555443   24566667766666555555566666777777776666544555555556666666654


Q ss_pred             C-CcccccCchhhhCCCCCCEEeccccccccccch-hHhhcCCCCCEEEcccccCCccCcccccCCC-CCCEEEccCCcC
Q 046382          176 R-NAFNGSIPSSFADMKMLERLDISDNQLTGEIPE-RMATGCFSLKILALSNNSLQGHIFSKKFNLT-NLMRLQLDGNKF  252 (691)
Q Consensus       176 ~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l  252 (691)
                      . |.+....+..|.++++|+++++++|.+. ..+. .....+..+..+...++.+.......+..++ .++.+++++|++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            3 4555555566666677777777766665 2322 1222233343444444444444344443332 455555555555


Q ss_pred             cccCCccccCCCCCCEE-EccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCE
Q 046382          253 IGEIPESLSKCYLLGGL-YLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKI  316 (691)
Q Consensus       253 ~~~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  316 (691)
                      ....+..+. .++++.+ .+.+|.++...+..|.++++|++|++++|+++...+..|.++++|+.
T Consensus       166 ~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         166 QEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             CEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             ccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            533333222 2232222 33444444333334445555555555555554333333333333333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=6.2e-17  Score=153.22  Aligned_cols=203  Identities=22%  Similarity=0.278  Sum_probs=116.1

Q ss_pred             EEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCC
Q 046382           98 ADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRN  177 (691)
Q Consensus        98 L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n  177 (691)
                      ++++.+++++...   .+.+.+|++|++.+|++.+.  ..+..+++|++|++++|+++ .++.  +..+++++++++++|
T Consensus        24 ~~l~~~~~~d~~~---~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          24 IAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSC
T ss_pred             HHhCCCCcCCcCC---HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceee-cccc--ccccccccccccccc
Confidence            3444455543332   24455666666666665443  23556666666666666665 2222  233566666666666


Q ss_pred             cccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCC
Q 046382          178 AFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP  257 (691)
Q Consensus       178 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  257 (691)
                      .++. + ..+.++++|+.++++++... .++.  +...+.++.+.++.+.+...  ..+...++|+.|++++|.+...  
T Consensus        96 ~~~~-i-~~l~~l~~L~~l~l~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--  166 (227)
T d1h6ua2          96 PLKN-V-SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--  166 (227)
T ss_dssp             CCSC-C-GGGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--
T ss_pred             cccc-c-cccccccccccccccccccc-ccch--hccccchhhhhchhhhhchh--hhhccccccccccccccccccc--
Confidence            6552 2 23566666666666666655 2222  23455666666666665432  2344566677777776665432  


Q ss_pred             ccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCCcchhhcCCCCCCEEEccC
Q 046382          258 ESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGPIPIEFCQLSALKILDLSN  321 (691)
Q Consensus       258 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  321 (691)
                      ..+..+++|+.|++++|++++. + .++.+++|++|++++|++++..  .+..+++|++|++++
T Consensus       167 ~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            2356667777777777776643 2 3666777777777777776432  366777777777653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.6e-17  Score=154.11  Aligned_cols=187  Identities=18%  Similarity=0.226  Sum_probs=107.5

Q ss_pred             CCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEe
Q 046382          215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIR  294 (691)
Q Consensus       215 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  294 (691)
                      +.+|+.|++.+|.++..  ..+..+++|++|++++|.+.+..  .+..+++++.+++++|.++..  ..+..+++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--ccccccccccccc
Confidence            33444444444444432  23444455555555555444322  144555555555555555422  2344555666666


Q ss_pred             cCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCCCC
Q 046382          295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGS  374 (691)
Q Consensus       295 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~  374 (691)
                      ++++...+.  ..+...+.++.+.++++.+... .....+++|+.|++++|.+.+..  .+..+++|+.|++++|++++.
T Consensus       114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred             ccccccccc--chhccccchhhhhchhhhhchh-hhhccccccccccccccccccch--hhcccccceecccCCCccCCC
Confidence            655555432  2244455666666666655422 22334566677777776665432  367778888888888888753


Q ss_pred             cchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccC
Q 046382          375 IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH  416 (691)
Q Consensus       375 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  416 (691)
                       + .++.+++|++|++++|++++..  .+..+++|+.|++++
T Consensus       189 -~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 -S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             -h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence             2 3777888888888888887543  377888888888864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.3e-17  Score=158.19  Aligned_cols=221  Identities=19%  Similarity=0.188  Sum_probs=134.1

Q ss_pred             CEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEEeccccccccccchhHhhcCCCCCEEEcc
Q 046382          145 ATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPERMATGCFSLKILALS  224 (691)
Q Consensus       145 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  224 (691)
                      +.++.++..++ .+|..+.   +++++|++++|.|+...+.+|.++++|++|++++|.+.+.++...+.++++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666666666 6665443   3667777777777655555667777777777777766544555555566666666654


Q ss_pred             c-ccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEecCCCccCCC
Q 046382          225 N-NSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIRMPNNNLEGP  303 (691)
Q Consensus       225 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  303 (691)
                      . |.+....+..+.++++|+.+++++|.+....+  +..                     +..+..+..+...++.+...
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~~---------------------~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHK---------------------IHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CTT---------------------TCBSSCEEEEEESCTTCCEE
T ss_pred             ccccccccccccccccccccccccchhhhccccc--ccc---------------------cccccccccccccccccccc
Confidence            3 44554444555556666666666655542211  111                     11223333333344444333


Q ss_pred             cchhhcCCC-CCCEEEccCCcCcccCCCCCCCCcccEEE-ccCCccccccccccCCCCCccEEeccCCCCCCCcchhhcC
Q 046382          304 IPIEFCQLS-ALKILDLSNNSIFGTLPSCFSPAHIEQVH-LSKNKIEGRLESIIHDSPYLVTLDLSYNRLHGSIPNRIDR  381 (691)
Q Consensus       304 ~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~~~L~~L~-l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~  381 (691)
                      .+..+..++ .++.+++++|++.......+..++++++. +++|+++.+.+..|.++++|+.|++++|+++...+..+.+
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  223 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  223 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred             cccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence            333344333 67777888887776666666666666654 5667787777777888899999999999988555556777


Q ss_pred             CCCccEEeccc
Q 046382          382 LPQLNYLLLAH  392 (691)
Q Consensus       382 l~~L~~L~L~~  392 (691)
                      +++|+++++.+
T Consensus       224 l~~L~~l~~~~  234 (242)
T d1xwdc1         224 LKKLRARSTYN  234 (242)
T ss_dssp             CCEEESSSEES
T ss_pred             CcccccCcCCC
Confidence            77777776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3e-17  Score=160.70  Aligned_cols=182  Identities=22%  Similarity=0.210  Sum_probs=102.6

Q ss_pred             CCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCC-cCcccCchhhhhCCCCCcE
Q 046382           93 HDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNN-FFHGHIPVEIGTYLPGLMD  171 (691)
Q Consensus        93 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~  171 (691)
                      .+|++||++++.+++.....++.++++|++|++++|.+.+.....+..+++|++|++++| .+++..-..+...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            356666666665554433444566666666666666665555555566666777777664 3442222233344667777


Q ss_pred             EEccCCc-cccc-Cchhhh-CCCCCCEEecccc--ccccccchhHhhcCCCCCEEEcccc-cCCccCcccccCCCCCCEE
Q 046382          172 LNLSRNA-FNGS-IPSSFA-DMKMLERLDISDN--QLTGEIPERMATGCFSLKILALSNN-SLQGHIFSKKFNLTNLMRL  245 (691)
Q Consensus       172 L~L~~n~-i~~~-~~~~~~-~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  245 (691)
                      |++++|. ++.. ....+. ..++|+.|+++++  .+++.....++..+++|++|++++| .+++.....+.++++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            7777653 3211 112222 2356777777754  2333333344456777777777765 3555555556666777777


Q ss_pred             EccCC-cCcccCCccccCCCCCCEEEccCC
Q 046382          246 QLDGN-KFIGEIPESLSKCYLLGGLYLSDN  274 (691)
Q Consensus       246 ~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n  274 (691)
                      ++++| .+++.....++.+++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77764 344433444555666666666665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.1e-16  Score=144.52  Aligned_cols=146  Identities=28%  Similarity=0.416  Sum_probs=93.1

Q ss_pred             cCCCCCccEEeccCCCCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccC
Q 046382          355 IHDSPYLVTLDLSYNRLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSG  434 (691)
Q Consensus       355 ~~~~~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~  434 (691)
                      +..+++|++|++++|++++..  .++.+++|++|++++|++++. + .+..+++|+.|++++|.+.. ++ .+.      
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~-~~-~l~------  131 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISD-IN-GLV------  131 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCC-CG-GGG------
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc-c-cccccccccccccccccccc-cc-ccc------
Confidence            445566666666666666432  245666667777766666632 2 46666777777777666541 11 111      


Q ss_pred             CCCcccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccC
Q 046382          435 GHHEAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSG  514 (691)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  514 (691)
                                                                          .++.++.+++++|.+++  +..+..+++
T Consensus       132 ----------------------------------------------------~l~~l~~l~~~~n~l~~--~~~~~~l~~  157 (210)
T d1h6ta2         132 ----------------------------------------------------HLPQLESLYLGNNKITD--ITVLSRLTK  157 (210)
T ss_dssp             ----------------------------------------------------GCTTCCEEECCSSCCCC--CGGGGGCTT
T ss_pred             ----------------------------------------------------ccccccccccccccccc--ccccccccc
Confidence                                                                14566777777777753  334667778


Q ss_pred             CCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccC
Q 046382          515 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAY  570 (691)
Q Consensus       515 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  570 (691)
                      |+++++++|++++..  .+.++++|++|+|++|++++ +| .+..+++|++|+|++
T Consensus       158 L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         158 LDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            888888888887433  27778888888888888874 33 577788888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.8e-16  Score=144.70  Aligned_cols=103  Identities=22%  Similarity=0.262  Sum_probs=45.1

Q ss_pred             CCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEE
Q 046382          117 NTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL  196 (691)
Q Consensus       117 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  196 (691)
                      +.+|++|++++|.+.+..  .+..+++|++|++++|+++ .++. + ..+++|++|++++|++++ ++ .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~-~-~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP-L-ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc-c-ccCccccccccccccccc-cc-ccccccccccc
Confidence            344555555555543322  2444555555555555554 2221 1 224455555555555442 22 24444555555


Q ss_pred             eccccccccccchhHhhcCCCCCEEEcccccCC
Q 046382          197 DISDNQLTGEIPERMATGCFSLKILALSNNSLQ  229 (691)
Q Consensus       197 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  229 (691)
                      ++++|.+. .++.  +..+++++.+++++|.++
T Consensus       118 ~l~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~  147 (210)
T d1h6ta2         118 SLEHNGIS-DING--LVHLPQLESLYLGNNKIT  147 (210)
T ss_dssp             ECTTSCCC-CCGG--GGGCTTCCEEECCSSCCC
T ss_pred             cccccccc-cccc--cccccccccccccccccc
Confidence            55554443 2221  223444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=8.2e-17  Score=147.74  Aligned_cols=157  Identities=17%  Similarity=0.201  Sum_probs=88.4

Q ss_pred             CCccEEeccCCCCCC-CcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCC
Q 046382          359 PYLVTLDLSYNRLHG-SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHH  437 (691)
Q Consensus       359 ~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~  437 (691)
                      +++++|+|++|+|+. ..+..|..+++|+.|++++|++.+..+..+..+++|++|++++|++....|..|..        
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~--------  100 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG--------  100 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTT--------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhC--------
Confidence            345555555555543 22334455555666666666655555555555566666666666555333322221        


Q ss_pred             cccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCe
Q 046382          438 EAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHA  517 (691)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  517 (691)
                                                                        +++|++|+|++|+|++..+..|..+++|++
T Consensus       101 --------------------------------------------------l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  130 (192)
T d1w8aa_         101 --------------------------------------------------LHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             --------------------------------------------------CTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             --------------------------------------------------CCcccccccCCccccccCHHHhcCCccccc
Confidence                                                              455666666666666556666777777777


Q ss_pred             EeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccC
Q 046382          518 LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKI  577 (691)
Q Consensus       518 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  577 (691)
                      |+|++|.+....+. ..-...++.+.+..|.++...|..+   ..++.++++.|.+....
T Consensus       131 l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         131 LNLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             EECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCC
T ss_pred             ccccccccccccch-HHHhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcCCC
Confidence            77777777633221 1112335556667777766666543   44666777777776543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=140.95  Aligned_cols=161  Identities=25%  Similarity=0.311  Sum_probs=78.4

Q ss_pred             CCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEccCCcccccCchhhhCCCCCCEE
Q 046382          117 NTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLSRNAFNGSIPSSFADMKMLERL  196 (691)
Q Consensus       117 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  196 (691)
                      ++++++|++++|.+...  ..++.+++|++|++++|+++ .++. + ..+++|++|++++|.+.. ++ .++++++|++|
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~-l-~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc-c-cCCccccccccccccccc-cc-ccccccccccc
Confidence            44455555555544332  12444555555555555554 2222 2 224555555555555442 22 24555555555


Q ss_pred             eccccccccccchhHhhcCCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcC
Q 046382          197 DISDNQLTGEIPERMATGCFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHL  276 (691)
Q Consensus       197 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  276 (691)
                      ++++|.+. .++.  +..+++|+.|++++|++...  +.+..+++|+.|++.+|++++.  ..++.+++|+.|++++|++
T Consensus       112 ~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         112 TLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             ECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             cccccccc-cccc--cchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            55555544 2221  23455555555555555432  2344555566666666555432  1255566666666666666


Q ss_pred             CCcchhhhhcCCCCCEE
Q 046382          277 SGEIPRWLGNLSALEGI  293 (691)
Q Consensus       277 ~~~~~~~l~~l~~L~~L  293 (691)
                      ++. + .++.+++|++|
T Consensus       185 ~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         185 SDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             CCC-G-GGGGCTTCSEE
T ss_pred             CCC-c-cccCCCCCCcC
Confidence            532 2 35556666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.8e-17  Score=158.20  Aligned_cols=224  Identities=18%  Similarity=0.193  Sum_probs=125.5

Q ss_pred             CEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEcc
Q 046382           96 KNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS  175 (691)
Q Consensus        96 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~  175 (691)
                      +++|++++.+.......++.  .....+.++...+.... .......+|++||+++|.++......++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            35566665543332222222  23445555555442222 2233445777777777776644445556667777788777


Q ss_pred             CCcccccCchhhhCCCCCCEEecccc-ccccccchhHhhcCCCCCEEEccccc-CCccCc-cccc-CCCCCCEEEccCCc
Q 046382          176 RNAFNGSIPSSFADMKMLERLDISDN-QLTGEIPERMATGCFSLKILALSNNS-LQGHIF-SKKF-NLTNLMRLQLDGNK  251 (691)
Q Consensus       176 ~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~-~l~~L~~L~L~~n~  251 (691)
                      +|.++...+..+.++++|++|++++| .+++..-..++.++++|++|+++++. ++.... ..+. ..++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            77777666667777777888887775 45433333344567777777777753 332111 1121 24567777776642


Q ss_pred             --Cccc-CCccccCCCCCCEEEccCCc-CCCcchhhhhcCCCCCEEecCCC-ccCCCcchhhcCCCCCCEEEccCC
Q 046382          252 --FIGE-IPESLSKCYLLGGLYLSDNH-LSGEIPRWLGNLSALEGIRMPNN-NLEGPIPIEFCQLSALKILDLSNN  322 (691)
Q Consensus       252 --l~~~-~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n  322 (691)
                        ++.. +......+++|++|++++|. +++.....+..+++|++|++++| .+++.....++.+++|++|+++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              2211 11223456667777776653 45455556666667777777664 344444445566666666666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.5e-15  Score=139.98  Aligned_cols=147  Identities=20%  Similarity=0.272  Sum_probs=64.2

Q ss_pred             CCCCCEEEcccccCCccCcccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchhhhhcCCCCCEEe
Q 046382          215 CFSLKILALSNNSLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPRWLGNLSALEGIR  294 (691)
Q Consensus       215 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  294 (691)
                      +.++++|++++|.++..  +.+..+++|++|++++|++++..  .+..+++|+.|++++|.+... + .+..++.|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-cccccccccccc
Confidence            34444555555444431  22334455555555555544321  144455555555555544322 1 244455555555


Q ss_pred             cCCCccCCCcchhhcCCCCCCEEEccCCcCcccCCCCCCCCcccEEEccCCccccccccccCCCCCccEEeccCCCCC
Q 046382          295 MPNNNLEGPIPIEFCQLSALKILDLSNNSIFGTLPSCFSPAHIEQVHLSKNKIEGRLESIIHDSPYLVTLDLSYNRLH  372 (691)
Q Consensus       295 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ls~n~i~  372 (691)
                      +++|.....  ..+..+++|+.|++++|.+.. ++....+++++.|++.+|++++..  .+.++++|+.|++++|+++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhcc-cccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence            555544422  224444555555555554432 122223344444444444443321  1344444444444444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.2e-14  Score=127.38  Aligned_cols=115  Identities=16%  Similarity=0.181  Sum_probs=100.5

Q ss_pred             cccceEEcCCCeeeeccchhhhcccCCCeEeCCCC-cCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEE
Q 046382          489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHN-NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK  567 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  567 (691)
                      ...+.++.+++.+. ..|..+..+++|++|++++| .++.+.++.|.++++|+.|+|++|+|+.+.|..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34567889999888 67888999999999999876 58877788899999999999999999988899999999999999


Q ss_pred             ccCCcccccCCCCCCCCCcCcCcccCCCCCCCCCCCC
Q 046382          568 VAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGKPLSK  604 (691)
Q Consensus       568 l~~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~l~~  604 (691)
                      |++|+|+...+.......++.++++||||.|+|.+.+
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~  123 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRW  123 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHH
T ss_pred             ccCCCCcccChhhhccccccccccCCCcccCCchHHH
Confidence            9999999776666556678899999999999997643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.6e-14  Score=126.10  Aligned_cols=128  Identities=20%  Similarity=0.171  Sum_probs=95.7

Q ss_pred             hcCCCCCCEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCC
Q 046382           89 LYHQHDLKNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPG  168 (691)
Q Consensus        89 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~  168 (691)
                      +.+..++++|+|++|+|+ .++. ++..+++|++|++++|++...  ..+..+++|++|++++|+++ .++..++..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            446667888888888887 5564 347788899999999988655  34788888999999999888 666666655788


Q ss_pred             CcEEEccCCcccccCc-hhhhCCCCCCEEeccccccccccch---hHhhcCCCCCEEE
Q 046382          169 LMDLNLSRNAFNGSIP-SSFADMKMLERLDISDNQLTGEIPE---RMATGCFSLKILA  222 (691)
Q Consensus       169 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~  222 (691)
                      |++|++++|.++.... ..+..+++|++|++++|.++ ..|.   .++..+++|+.||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            8999998888874321 45778888888888888887 5553   2345677777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=2.3e-14  Score=144.67  Aligned_cols=64  Identities=22%  Similarity=0.190  Sum_probs=29.1

Q ss_pred             CCCCCEEEcccccCCcc-----CcccccCCCCCCEEEccCCcCccc----CCccccCCCCCCEEEccCCcCCC
Q 046382          215 CFSLKILALSNNSLQGH-----IFSKKFNLTNLMRLQLDGNKFIGE----IPESLSKCYLLGGLYLSDNHLSG  278 (691)
Q Consensus       215 l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~  278 (691)
                      ++.|+.|++++|.+...     ....+...++|+.|++++|.++..    +...+..+++|++|++++|.+++
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            44555555555544321     112233445555555555554321    12233445555555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8e-14  Score=122.86  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=44.9

Q ss_pred             ccccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccc-hhhcCCCcCCEEeCCCccccccC---CcccccCCCC
Q 046382          488 LTSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKI---PPQLIVLNTL  563 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L  563 (691)
                      +++|++|++++|+++...+..+..+++|++|++++|+|+.... ..+..+++|++|++++|+++...   +..+..+|+|
T Consensus        62 l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L  141 (162)
T d1a9na_          62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV  141 (162)
T ss_dssp             CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred             CcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCc
Confidence            3455555555555554444445556666666666666653221 34566666777777777665322   1235566677


Q ss_pred             CeEE
Q 046382          564 EVFK  567 (691)
Q Consensus       564 ~~L~  567 (691)
                      ++||
T Consensus       142 ~~LD  145 (162)
T d1a9na_         142 RVLD  145 (162)
T ss_dssp             SEET
T ss_pred             CeeC
Confidence            7665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=2.4e-14  Score=144.51  Aligned_cols=236  Identities=23%  Similarity=0.215  Sum_probs=128.4

Q ss_pred             CCCCcEEEccCCccccc----CchhhhCCCCCCEEecccccccc---ccchhH------hhcCCCCCEEEcccccCCccC
Q 046382          166 LPGLMDLNLSRNAFNGS----IPSSFADMKMLERLDISDNQLTG---EIPERM------ATGCFSLKILALSNNSLQGHI  232 (691)
Q Consensus       166 l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~------~~~l~~L~~L~l~~n~l~~~~  232 (691)
                      ...|++|+|++|.+...    +...+...++|+.++++++....   ..+..+      +..+++|++|++++|.++...
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            45677777777766432    22334555677777776654321   111111      123444555555555444321


Q ss_pred             cccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEEccCCcCCCcchh-------------hhhcCCCCCEEecCCCc
Q 046382          233 FSKKFNLTNLMRLQLDGNKFIGEIPESLSKCYLLGGLYLSDNHLSGEIPR-------------WLGNLSALEGIRMPNNN  299 (691)
Q Consensus       233 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-------------~l~~l~~L~~L~l~~n~  299 (691)
                      ...+                    ...+..++.|+.|++++|.+......             .....+.|+.+.+++|.
T Consensus       110 ~~~l--------------------~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1         110 QEPL--------------------IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             HHHH--------------------HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             ccch--------------------hhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            1111                    12223344455555555544211100             11234566666666665


Q ss_pred             cCCCc----chhhcCCCCCCEEEccCCcCccc-----CCC-CCCCCcccEEEccCCccccc----cccccCCCCCccEEe
Q 046382          300 LEGPI----PIEFCQLSALKILDLSNNSIFGT-----LPS-CFSPAHIEQVHLSKNKIEGR----LESIIHDSPYLVTLD  365 (691)
Q Consensus       300 ~~~~~----~~~~~~l~~L~~L~L~~n~i~~~-----~~~-~~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~L~~L~  365 (691)
                      +....    ...+...+.|++|++++|.+...     ... ....++|+.|++++|.++..    ....+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            54322    22234556677777777766432     111 22456777777777776543    234566788899999


Q ss_pred             ccCCCCCCCcch----hhcC--CCCccEEecccCcCcccC----CcCCC-CCCCCCEEEccCCCCCC
Q 046382          366 LSYNRLHGSIPN----RIDR--LPQLNYLLLAHNYIKGEI----PVQLC-QLKEVRLIDLSHNNLSG  421 (691)
Q Consensus       366 ls~n~i~~~~~~----~~~~--l~~L~~L~L~~n~i~~~~----~~~~~-~l~~L~~L~l~~n~l~~  421 (691)
                      +++|.+++....    .+..  .+.|++|++++|+|+...    ...+. ++++|+.|++++|.+..
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            999988754332    2332  467999999999886432    22232 46789999999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.7e-13  Score=114.59  Aligned_cols=83  Identities=25%  Similarity=0.345  Sum_probs=40.1

Q ss_pred             cccceEEcCCCeeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccC-CcccccCCCCCeEE
Q 046382          489 TSMSGIDLSCNKLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI-PPQLIVLNTLEVFK  567 (691)
Q Consensus       489 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~  567 (691)
                      ++|++||+++|+++ .+|..++.+++|++|++++|.|+.. | .+..+++|++|++++|++++.. +..+..+++|+.++
T Consensus        20 ~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          20 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEE
Confidence            34444444444444 3344445555555555555555422 2 2455555555555555554322 13444555555555


Q ss_pred             ccCCccc
Q 046382          568 VAYNNLS  574 (691)
Q Consensus       568 l~~N~l~  574 (691)
                      +++|+++
T Consensus        97 l~~N~i~  103 (124)
T d1dcea3          97 LQGNSLC  103 (124)
T ss_dssp             CTTSGGG
T ss_pred             CCCCcCC
Confidence            5555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.6e-13  Score=113.42  Aligned_cols=119  Identities=24%  Similarity=0.285  Sum_probs=63.3

Q ss_pred             CEEEccCCCCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEEEcc
Q 046382           96 KNADLSHLNLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDLNLS  175 (691)
Q Consensus        96 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~  175 (691)
                      |.|++++|+++ .++.  ++++++|++|++++|+++. .|..+..+++|++|++++|+++ .+|. +. .+++|++|+++
T Consensus         1 R~L~Ls~n~l~-~l~~--l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~-~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VA-NLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCEEECC
T ss_pred             CEEEcCCCCCC-CCcc--cccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccc-ccCc-cc-cccccCeEECC
Confidence            35566666665 4443  3556666666666666543 3344555666666666666665 4432 22 35566666666


Q ss_pred             CCcccccC-chhhhCCCCCCEEecccccccc--ccchhHhhcCCCCCEE
Q 046382          176 RNAFNGSI-PSSFADMKMLERLDISDNQLTG--EIPERMATGCFSLKIL  221 (691)
Q Consensus       176 ~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L  221 (691)
                      +|+++... ...+..+++|++|++++|++++  ..+..+...+|+|+.|
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            66665322 2345566666666666666542  1223344445555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=5e-14  Score=128.85  Aligned_cols=149  Identities=19%  Similarity=0.241  Sum_probs=109.2

Q ss_pred             CccEEeccCC--CCCCCcchhhcCCCCccEEecccCcCcccCCcCCCCCCCCCEEEccCCCCCCCCChhhhhccccCCCC
Q 046382          360 YLVTLDLSYN--RLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGHIPSCLVNTALSGGHH  437 (691)
Q Consensus       360 ~L~~L~ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~  437 (691)
                      .++.+++.+.  .+. .++..+..+++|++|++++|+|+. ++ .+..+++|+.|++++|.++ .+|.....        
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~--------   91 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV--------   91 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH--------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc--------
Confidence            3445555543  233 456678888999999999999884 33 5778899999999999886 34432211        


Q ss_pred             cccCCCcccccCcccccccccCCCCCCCCCCcccEEEEecCccceeccccccccceEEcCCCeeeeccchhhhcccCCCe
Q 046382          438 EAVAPTSIWCGRASVYISACLPSRSAPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLSGIHA  517 (691)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  517 (691)
                                                                        +++|+.|++++|+++. + ..+..+++|+.
T Consensus        92 --------------------------------------------------~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~  119 (198)
T d1m9la_          92 --------------------------------------------------ADTLEELWISYNQIAS-L-SGIEKLVNLRV  119 (198)
T ss_dssp             --------------------------------------------------HHHCCEEECSEEECCC-H-HHHHHHHHSSE
T ss_pred             --------------------------------------------------cccccccccccccccc-c-ccccccccccc
Confidence                                                              4678999999999984 3 35788999999


Q ss_pred             EeCCCCcCCcccc-hhhcCCCcCCEEeCCCccccccCCcc----------cccCCCCCeEEccCCccc
Q 046382          518 LNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLHGKIPPQ----------LIVLNTLEVFKVAYNNLS  574 (691)
Q Consensus       518 L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~  574 (691)
                      |++++|+|+.... ..+..+++|+.|+|++|++....+..          +..+|+|+.||  +..++
T Consensus       120 L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            9999999985432 46889999999999999987655442          56788888876  44443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=1.9e-13  Score=124.94  Aligned_cols=127  Identities=20%  Similarity=0.207  Sum_probs=78.2

Q ss_pred             CCEEEccCC--CCcccCchHHhhcCCCCCEEEccCCcccccCCcCccCCCccCEEEccCCcCcccCchhhhhCCCCCcEE
Q 046382           95 LKNADLSHL--NLSGQFPNWLLENNTNLVMLLLANNSLFGSFRMPIHSHQNLATLDVSNNFFHGHIPVEIGTYLPGLMDL  172 (691)
Q Consensus        95 L~~L~L~~~--~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L  172 (691)
                      ++.+++.+.  .+. .++.. +..+++|++|+|++|++... + .+..+++|++|++++|+++ .+|..... +++|++|
T Consensus        25 ~~~~~l~~~~~~i~-~l~~s-l~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~L   98 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDAT-LSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEEL   98 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHH-HHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCEE
T ss_pred             cceeeeecccCchh-hhhhH-HhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccc-ccccccc
Confidence            444455443  222 33444 36777777777777777543 2 4667777777777777776 55543322 4567777


Q ss_pred             EccCCcccccCchhhhCCCCCCEEeccccccccccch-hHhhcCCCCCEEEcccccCCc
Q 046382          173 NLSRNAFNGSIPSSFADMKMLERLDISDNQLTGEIPE-RMATGCFSLKILALSNNSLQG  230 (691)
Q Consensus       173 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~  230 (691)
                      ++++|.++..  ..+..+++|++|++++|+++ .++. ..+..+++|+.|++++|++..
T Consensus        99 ~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          99 WISYNQIASL--SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ECSEEECCCH--HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccc--ccccccccccccccccchhc-cccccccccCCCccceeecCCCcccc
Confidence            7777777632  34667777777777777776 4433 334567777777777776543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.6e-11  Score=105.67  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=71.1

Q ss_pred             ccccceEEcCCC-eeeeccchhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCcccccCCCCCeE
Q 046382          488 LTSMSGIDLSCN-KLTGEIPTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVF  566 (691)
Q Consensus       488 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  566 (691)
                      ++++++|++++| .++...+..|.++++|+.|+|++|+|+.+.|.+|..+++|++|+|++|+|+...+..+.. .+|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccc
Confidence            567888888765 477666778899999999999999999888888999999999999999998555555544 479999


Q ss_pred             EccCCcccc
Q 046382          567 KVAYNNLSG  575 (691)
Q Consensus       567 ~l~~N~l~~  575 (691)
                      +|++|++..
T Consensus       109 ~L~~Np~~C  117 (156)
T d2ifga3         109 VLSGNPLHC  117 (156)
T ss_dssp             ECCSSCCCC
T ss_pred             ccCCCcccC
Confidence            999998853

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.4e-08  Score=86.13  Aligned_cols=80  Identities=20%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             ccccceEEcCCCeeeecc--chhhhcccCCCeEeCCCCcCCcccchhhcCCCcCCEEeCCCccccccCCc-------ccc
Q 046382          488 LTSMSGIDLSCNKLTGEI--PTQIGYLSGIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPP-------QLI  558 (691)
Q Consensus       488 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~  558 (691)
                      +++|++|+|++|+++...  +..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|++......       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            566777777777776432  34456667777777777777644433344445667777777776644332       244


Q ss_pred             cCCCCCeEE
Q 046382          559 VLNTLEVFK  567 (691)
Q Consensus       559 ~l~~L~~L~  567 (691)
                      .+|+|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            566666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.3e-07  Score=82.39  Aligned_cols=76  Identities=24%  Similarity=0.175  Sum_probs=61.1

Q ss_pred             ccchhhhcccCCCeEeCCCCcCCccc--chhhcCCCcCCEEeCCCccccccCCcccccCCCCCeEEccCCcccccCCC
Q 046382          504 EIPTQIGYLSGIHALNLSHNNLTGTI--PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD  579 (691)
Q Consensus       504 ~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  579 (691)
                      .++..+..+++|++|+|++|+|+...  +..+..+++|+.|||++|.|+...+-.+.....|+.+++++|++++....
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCccc
Confidence            44555678999999999999998653  45678899999999999999965554445566899999999999876543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=1.7e-05  Score=68.79  Aligned_cols=41  Identities=12%  Similarity=0.198  Sum_probs=18.1

Q ss_pred             hcCCCCCEEEccCC-ccccc----CCcCccCCCccCEEEccCCcCc
Q 046382          115 ENNTNLVMLLLANN-SLFGS----FRMPIHSHQNLATLDVSNNFFH  155 (691)
Q Consensus       115 ~~l~~L~~L~L~~n-~~~~~----~~~~l~~l~~L~~L~Ls~n~i~  155 (691)
                      .+.++|++|+|+++ .+...    +...+...++|++|++++|.+.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            34455666666543 23211    1112334445555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.63  E-value=2.1e-05  Score=68.26  Aligned_cols=111  Identities=17%  Similarity=0.201  Sum_probs=50.7

Q ss_pred             CCCCCCEEEccCC-CCcccCchH---HhhcCCCCCEEEccCCcccccCCc----CccCCCccCEEEccCCcCcccCchhh
Q 046382           91 HQHDLKNADLSHL-NLSGQFPNW---LLENNTNLVMLLLANNSLFGSFRM----PIHSHQNLATLDVSNNFFHGHIPVEI  162 (691)
Q Consensus        91 ~l~~L~~L~L~~~-~~~~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~~  162 (691)
                      +.+.|++|+|+++ .+....-..   .+...+.|++|++++|.+......    .+...+.|++|++++|.+++.....+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3455666666543 233211111   123455566666666655432211    23344556666666666553322222


Q ss_pred             hhC---CCCCcEEEccCCccccc-------CchhhhCCCCCCEEecccc
Q 046382          163 GTY---LPGLMDLNLSRNAFNGS-------IPSSFADMKMLERLDISDN  201 (691)
Q Consensus       163 ~~~---l~~L~~L~L~~n~i~~~-------~~~~~~~l~~L~~L~L~~n  201 (691)
                      +..   .+.|++|++++|.+...       +...+...++|++|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            211   23466666655543311       2233444555666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.06  E-value=0.00025  Score=61.10  Aligned_cols=41  Identities=10%  Similarity=0.113  Sum_probs=20.2

Q ss_pred             hcCCCCCEEEccCC-ccccc----CCcCccCCCccCEEEccCCcCc
Q 046382          115 ENNTNLVMLLLANN-SLFGS----FRMPIHSHQNLATLDVSNNFFH  155 (691)
Q Consensus       115 ~~l~~L~~L~L~~n-~~~~~----~~~~l~~l~~L~~L~Ls~n~i~  155 (691)
                      .+.++|++|+++++ .+...    +...+...++|++|++++|.++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            45566666666652 33221    1122334555556666655554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.93  E-value=0.00018  Score=62.01  Aligned_cols=40  Identities=13%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             CCCCCcEEEccC-Cccccc----CchhhhCCCCCCEEeccccccc
Q 046382          165 YLPGLMDLNLSR-NAFNGS----IPSSFADMKMLERLDISDNQLT  204 (691)
Q Consensus       165 ~l~~L~~L~L~~-n~i~~~----~~~~~~~l~~L~~L~L~~n~l~  204 (691)
                      ..++|++|++++ +.++..    +..++...++|++|++++|.++
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            345666666665 334321    2233445566666666666554