Citrus Sinensis ID: 046415

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGLWNKHVLVSN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MLSAKKLMKMATKWQRQLKLEEKRTLLQRSksfinsntspavadkdhfvacamdnrrlvipvpylySDIFRELLRMSeeefglpkdglimfpcdsFFLEYVVSTSCRSlssslhqglwnkhvlvsn
Flexible Loop (DISEMBL)
mlsakklmKMATKWQRQLKLEEKRtllqrsksfinsntspavadKDHFVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLssslhqglwnkhvlvsn
Low Complexity Region (SEG)
MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVstscrslsssLHQGLWNKHVLVSN
Disordered region (IsUnstruct)
*****************************************VADKDHFVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGLWNKHVL***
Disordered Region (DISOPRED)
***AKKLMKMATKWQ**************************VADKDHFVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSC******LH*GLWNKHVLVS*
Disordered Region (DISEMBL)
MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGLWNKHVLVSN
Disordered Region (DISPRO)
*LSAKKLMKMATKWQRQLKLE**********************DKDHFVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGLWNKHVLV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSxxxxxxxxxxxxxxxxxxxxxTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGLWNKHVLVSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.587	0.822	0.375	0.0005

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 29  RSKSF-INSNTSPAVADKDHFVACAMDN--RRLVIPVPYLYSDIFRELLRMSEEEFGL-- 83
           R  SF  N  +S AV  +  ++A  +    RR VIPV YL    F++LL  +EEEFG   
Sbjct: 9   RKASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHH 68

Query: 84  PKDGLIMFPCDSFFLEYVVS 103
           P  GL + PC     +++ S
Sbjct: 69  PNGGLTI-PCSEDVFQHITS 87

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
225428233	147	PREDICTED: uncharacterized protein LOC10	0.928	0.795	0.466	2e-25
225428223	148	PREDICTED: indole-3-acetic acid-induced	0.928	0.790	0.470	4e-25
225428229	148	PREDICTED: uncharacterized protein LOC10	0.928	0.790	0.470	5e-25
225428225	148	PREDICTED: uncharacterized protein LOC10	0.928	0.790	0.495	1e-24
225428215	148	PREDICTED: auxin-induced protein 6B-like	0.928	0.790	0.462	8e-24
225428211	148	PREDICTED: auxin-induced protein 6B-like	0.928	0.790	0.478	9e-24
359474805	171	PREDICTED: uncharacterized protein LOC10	0.928	0.684	0.462	1e-23
297744511	148	unnamed protein product [Vitis vinifera]	0.928	0.790	0.462	1e-23
225428205	148	PREDICTED: auxin-induced protein 6B-like	0.928	0.790	0.462	2e-23
147846493	228	hypothetical protein VITISV_014159 [Viti	0.928	0.513	0.470	2e-23

>gi|225428233|ref|XP_002279337.1| PREDICTED: uncharacterized protein LOC100257266 [Vitis vinifera]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 81/118 (68%), Gaps = 1/118 (0%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSN-TSPAVADKDHFVACAMDNRRLV 59
           M+SAKKL+KMA  WQ+   +  KR +L R+   ++++  S + A+K HFV  + D  R V
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPRTSGEVDADGCSTSTAEKGHFVVYSSDESRFV 60

Query: 60  IPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGL 117
           +P+PYL S+IFREL +MSEEEFGLP +G I  PCD+ F+EY++S   +S++  L + L
Sbjct: 61  VPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKAL 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428223|ref|XP_002279270.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 81/119 (68%), Gaps = 2/119 (1%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFIN--SNTSPAVADKDHFVACAMDNRRL 58
           M+SAKKL+KMA KWQ+   +  KR  L R+   ++  S ++ + A+K HFV  + D  R 
Sbjct: 1   MISAKKLIKMARKWQKMAAIRRKRISLPRTSREVDAESCSTSSTAEKGHFVVYSADESRF 60

Query: 59  VIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGL 117
           V+P+PYL S+IFREL +MSEEEFGLP +G I  PCD+ F+EY++S   +S++  L + L
Sbjct: 61  VVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKAL 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428229|ref|XP_002279305.1| PREDICTED: uncharacterized protein LOC100267542 [Vitis vinifera]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 79/119 (66%), Gaps = 2/119 (1%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSN--TSPAVADKDHFVACAMDNRRL 58
           M++ KKL+KMA +WQ+   +  KR  L R+  ++ +   ++ +VADK HFV    D RR 
Sbjct: 1   MINPKKLIKMAREWQKVAAIRRKRISLPRTSQYLGAGHCSTSSVADKGHFVVYTADQRRF 60

Query: 59  VIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGL 117
           +IP+ YL S+IFREL  MSEEEFGLP DG I  PCDSFF+EY++    R ++ +L + L
Sbjct: 61  MIPLVYLNSEIFRELFEMSEEEFGLPSDGPITLPCDSFFMEYILFLVQRGVAKNLEKAL 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428225|ref|XP_002282054.1| PREDICTED: uncharacterized protein LOC100253806 [Vitis vinifera]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 79/119 (66%), Gaps = 2/119 (1%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSN--TSPAVADKDHFVACAMDNRRL 58
           M+S KKL++MA KWQ+   L  KR  LQR    +N +  ++ +VADK HFV  + D RR 
Sbjct: 1   MISPKKLIRMARKWQKMAALGRKRISLQRINKGVNEDCCSTSSVADKGHFVVYSSDRRRF 60

Query: 59  VIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGL 117
           VIP+ YL S+IFREL +MSEEEFG+   G I+ PCDS FL+YV+S   R ++  L + L
Sbjct: 61  VIPLAYLNSEIFRELFQMSEEEFGIQSAGPIILPCDSVFLDYVISFIQRGVAKELERAL 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428215|ref|XP_002279172.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 82/119 (68%), Gaps = 2/119 (1%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSN--TSPAVADKDHFVACAMDNRRL 58
           M++ KKL+KMA KWQ+   ++ KR  L R+   ++++  ++ AVADK HFV  + D RR 
Sbjct: 1   MINPKKLIKMARKWQKIAAMKRKRITLPRTDEILDADGCSTSAVADKGHFVVFSSDKRRF 60

Query: 59  VIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGL 117
           VIP+ YL ++IFRELL+MSEEEFG+  +G I+ PCDS F++YV+S     ++  L + L
Sbjct: 61  VIPLVYLNNEIFRELLQMSEEEFGIQSEGPIILPCDSVFMDYVISFIQHGVAKDLERAL 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428211|ref|XP_002279132.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 81/119 (68%), Gaps = 2/119 (1%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNT--SPAVADKDHFVACAMDNRRL 58
           M++ KKL+KMA KWQ+   +  KR  L R    +N++   + AVA+K HFV  + D RR 
Sbjct: 1   MINPKKLIKMARKWQKIAAMRRKRISLPRIDEVLNADCCGTSAVAEKGHFVVYSSDKRRF 60

Query: 59  VIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGL 117
           VIP+ YL ++IFRELL+MSEEEFG+  +G I+ PCDS F++YV+S   RS++  L + L
Sbjct: 61  VIPLVYLNNEIFRELLQMSEEEFGIQSEGHIILPCDSVFMDYVISFIQRSVAKDLERAL 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474805|ref|XP_002279233.2| PREDICTED: uncharacterized protein LOC100260607 [Vitis vinifera]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 2/119 (1%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSN--TSPAVADKDHFVACAMDNRRL 58
           M++ KKL+KMA +WQ+   +  KR  L R+   +++   ++ +VADK HFV    D RR 
Sbjct: 24  MINPKKLIKMAREWQKVAAIRRKRISLPRTHQDLDAGYCSTSSVADKGHFVVYTADQRRF 83

Query: 59  VIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGL 117
           +IP+ YL S IFREL  MSE EFGLP DG I  PCDSFF+EY++    R ++  L + L
Sbjct: 84  MIPIVYLNSKIFRELFEMSEAEFGLPSDGPITLPCDSFFMEYIIFLVQRGVAKDLEKAL 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744511|emb|CBI37773.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 2/119 (1%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSN--TSPAVADKDHFVACAMDNRRL 58
           M++ KKL+KMA +WQ+   +  KR  L R+   +++   ++ +VADK HFV    D RR 
Sbjct: 1   MINPKKLIKMAREWQKVAAIRRKRISLPRTHQDLDAGYCSTSSVADKGHFVVYTADQRRF 60

Query: 59  VIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGL 117
           +IP+ YL S IFREL  MSE EFGLP DG I  PCDSFF+EY++    R ++  L + L
Sbjct: 61  MIPIVYLNSKIFRELFEMSEAEFGLPSDGPITLPCDSFFMEYIIFLVQRGVAKDLEKAL 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428205|ref|XP_002279052.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 82/119 (68%), Gaps = 2/119 (1%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSN--TSPAVADKDHFVACAMDNRRL 58
           M++ KKL+KMA KWQ+   ++ KR  L R+   ++++  ++ AVADK HFV  + D RR 
Sbjct: 1   MINPKKLIKMARKWQKIAAMKRKRISLPRTDEVLDADGCSTSAVADKGHFVVYSSDKRRF 60

Query: 59  VIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGL 117
           VIP+ YL ++IFRELL+MSEEEFG+  +G I+ PCDS F++YV+S     ++  L + L
Sbjct: 61  VIPLVYLNNEIFRELLQMSEEEFGIQSEGPIILPCDSVFMDYVISFIQHGVAKDLERAL 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846493|emb|CAN79513.1| hypothetical protein VITISV_014159 [Vitis vinifera]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 78/119 (65%), Gaps = 2/119 (1%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNT--SPAVADKDHFVACAMDNRRL 58
           M+S KKL++MA KWQ+   L  KR  LQR    +++++  +  VADK HFV  + D RR 
Sbjct: 1   MISPKKLIRMARKWQKGAALGRKRISLQRINRGVDADSCSTSTVADKGHFVVYSSDRRRF 60

Query: 59  VIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVSTSCRSLSSSLHQGL 117
            IP+ YL S+IFREL +MSEEEFG+   G I+ PCDS F++YV+S   R ++  L + L
Sbjct: 61  AIPLAYLNSEIFRELFQMSEEEFGIQSAGPIILPCDSVFMDYVISFIQRGVAKDLERAL 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2013703	143	SAUR68 "AT1G29510" [Arabidopsi	0.785	0.692	0.480	1.2e-19
TAIR|locus:2013598	141	SAUR63 "AT1G29440" [Arabidopsi	0.785	0.702	0.470	3.1e-19
TAIR|locus:2013608	141	AT1G29450 "AT1G29450" [Arabido	0.777	0.695	0.480	3.1e-19
TAIR|locus:2013593	141	AT1G29430 "AT1G29430" [Arabido	0.785	0.702	0.480	2.2e-18
TAIR|locus:2013753	141	AT1G29420 "AT1G29420" [Arabido	0.785	0.702	0.441	2.8e-18
TAIR|locus:2180270	142	SAUR75 "AT5G27780" [Arabidopsi	0.793	0.704	0.450	1.2e-17
TAIR|locus:2013618	148	AT1G29460 "AT1G29460" [Arabido	0.809	0.689	0.433	1.6e-17
TAIR|locus:2013698	135	AT1G29500 "AT1G29500" [Arabido	0.761	0.711	0.431	5.3e-17
TAIR|locus:2013653	102	AT1G29490 "AT1G29490" [Arabido	0.730	0.901	0.463	2.3e-16
TAIR|locus:2199819	123	AT1G76190 "AT1G76190" [Arabido	0.460	0.471	0.344	1.8e-09

TAIR|locus:2013703 SAUR68 "AT1G29510" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 49/102 (48%), Positives = 66/102 (64%)

Query:     1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVI 60
             M++AKKLMKMA KWQ++  L  KR   QRS  F +S+++    +K  FV    D  R   
Sbjct:     2 MINAKKLMKMAKKWQQRAALHRKRISFQRSNVFTSSSST---VEKGCFVVYTADKIRFAF 58

Query:    61 PVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVV 102
             P+ YL + I +ELL++SEEEFGLP +G I  P DS FLEY++
Sbjct:    59 PISYLSNSIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLI 100

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013598 SAUR63 "AT1G29440" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 48/102 (47%), Positives = 66/102 (64%)

Query:     1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVI 60
             M++AKKLMKMA KWQ++  L  KR   QRS  F +S+++    +K  FV    D  R   
Sbjct:     1 MINAKKLMKMAKKWQQRAALHRKRISFQRSSVFTSSSST---VEKGCFVVYTADKIRFAF 57

Query:    61 PVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVV 102
             P+ YL + + +ELL++SEE+FGLP +G I  P DS FLEY+V
Sbjct:    58 PISYLSNSVVQELLKISEEDFGLPTEGPITLPFDSAFLEYLV 99

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009926 "auxin polar transport" evidence=IDA

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2013608 AT1G29450 "AT1G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 49/102 (48%), Positives = 65/102 (63%)

Query:     1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVI 60
             M++ KKL+KMA KWQ++  L  KR   QRS    +S TS   A+K  FV    D+ R   
Sbjct:     1 MMNTKKLIKMAKKWQQRAALHRKRISFQRS----SSATSSTAAEKGCFVVYTTDSTRFAF 56

Query:    61 PVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVV 102
             P+ YL + +F+ELL++SEEEFGLP  G I  P DS FLEY++
Sbjct:    57 PLSYLSNSVFQELLKISEEEFGLPTGGPITSPFDSVFLEYLI 98

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013593 AT1G29430 "AT1G29430" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 49/102 (48%), Positives = 67/102 (65%)

Query:     1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVI 60
             M++AKKLMK+A KWQ++  L+ KR   QRS   I +++  AV +K  FV    D  R   
Sbjct:     2 MINAKKLMKLAKKWQQRAALKRKRISFQRSS--ITTSSQTAV-EKGCFVVYTADKIRFSF 58

Query:    61 PVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVV 102
             P+ YL + I +ELL++SEEEFGLP +G I  P DS FLEY++
Sbjct:    59 PLSYLSNTIVQELLKISEEEFGLPTEGPITLPFDSAFLEYLI 100

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013753 AT1G29420 "AT1G29420" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 45/102 (44%), Positives = 64/102 (62%)

Query:     1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVI 60
             M++ KKL+KMA KWQ++  L  KR    RS    +S+T+   A+K  FV    D  R   
Sbjct:     1 MMNTKKLLKMAKKWQQRAALRRKRISFHRSTDTTSSSTA---AEKGCFVVYTSDRIRFAF 57

Query:    61 PVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVV 102
             P+ YL + + +ELL++SEEEFG+P +G I  P DS FLEY++
Sbjct:    58 PISYLSNSVIQELLKISEEEFGIPTEGPITLPFDSVFLEYLI 99

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180270 SAUR75 "AT5G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 46/102 (45%), Positives = 63/102 (61%)

Query:     1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVI 60
             M++AK LMK+A  WQ++  L+ KR   QRS   I + +S    +K  FV    D  R   
Sbjct:     2 MINAKTLMKLAKTWQQRAALKRKRISFQRSS--ITTTSSQTTVEKGCFVVYTADKIRFSF 59

Query:    61 PVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVV 102
             P+ YL + I +ELL++SEEEFGLP +G I  P DS FLEY++
Sbjct:    60 PLSYLSNTIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLI 101

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013618 AT1G29460 "AT1G29460" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/106 (43%), Positives = 63/106 (59%)

Query:     1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNT----SPAVADKDHFVACAMDNR 56
             M++ KKL+KMA KWQ++  L+ KR   QRS +   + T    S    +K  FV   +D  
Sbjct:     1 MINTKKLLKMAKKWQQRAALKRKRISFQRSTTTTTTTTTTTSSSTAVEKGCFVVYTVDKI 60

Query:    57 RLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVV 102
             R   P+ YL + +F ELL++SEEEFGL   G I  P DS FLEY++
Sbjct:    61 RFAFPLSYLNNSVFEELLKISEEEFGLRAGGPITLPFDSVFLEYLI 106

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013698 AT1G29500 "AT1G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 44/102 (43%), Positives = 59/102 (57%)

Query:     1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVI 60
             M++ KKL+KM  KWQ++  L  KR   QR       +T     +K  FV    DN R   
Sbjct:     1 MMNTKKLIKMFRKWQQRAALHRKRISFQRP------STRSTTVEKGCFVVYTADNTRFAF 54

Query:    61 PVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVV 102
             P+ YL + +F+E+L +SEEEFGLP  G I  P DS FLEY++
Sbjct:    55 PISYLSNSVFQEILEISEEEFGLPTGGPITLPFDSVFLEYLI 96

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2013653 AT1G29490 "AT1G29490" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 44/95 (46%), Positives = 60/95 (63%)

Query:     1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDNRRLVI 60
             M++ KKLMKMA KWQ++  L  KR   QRS S   +++S AV +K  FV    D  R   
Sbjct:     1 MMNTKKLMKMAKKWQQRAALRRKRISFQRSNS--TTSSSSAV-EKGCFVVYTADQVRFAF 57

Query:    61 PVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDS 95
             P+ YL + + +ELL++SEEEFG+P +G I  P DS
Sbjct:    58 PISYLSNSVIQELLKISEEEFGIPTEGPITLPFDS 92

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2199819 AT1G76190 "AT1G76190" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query:    45 KDHFVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVV 102
             K HF     + +R V+P+ YL   + + LL+M+E+EFG   DG +  PCD   +++++
Sbjct:    23 KGHFAVYTNEGKRFVLPLDYLNHPMLQVLLQMAEDEFGTTIDGPLKVPCDGSLMDHII 80

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036232001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (142 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	4e-19
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	4e-06
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	2e-05
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-04

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 75.8 bits (187), Expect = 4e-19
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 1   MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMDN-RRLV 59
           M S  K    A KW         R    +S        S A   K HF     +  RR V
Sbjct: 1   MASRLKKASSAKKWILSAASGRSRGSSSKS--------SSADVPKGHFAVYVGEETRRFV 52

Query: 60  IPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVS 103
           +P+ YL   +F+ELL  +EEEFG  +DG +  PCD    E+++ 
Sbjct: 53  VPISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLW 96

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 45  KDHFVACAMDNR-RLVIPVPYLYSDIFRELLRMSEEEFGLPKDGLIMFPCDSFFLEYVVS 103
           K HF     +NR R ++P+ +L    F+ LL+ +EEEFG   D  +  PC+      + S
Sbjct: 42  KGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTS 101

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 30  SKSFINSNTSPAVADKDH---FVACAMDNRRLVIPVPYLYSDIFRELLRMSEEEFGLPKD 86
           S S  +S T+  +  K H   +V   M+ +R V+P+ YL   +FRE L  +EEE G    
Sbjct: 26  SSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHS 85

Query: 87  -GLIMFPCDSFFLEYVVST 104
            G +  PC      +++++
Sbjct: 86  MGGLTIPCREESFLHLITS 104

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 53  MDNRRLVIPVPYLYSDIFRELLRMSEEEFGL--PKDGLIMFPC-DSFFLEYVVS 103
           M+ +R V+P+ +L    F+E L  +EEEFG   P  GL + PC +  FL+ + S
Sbjct: 50  MEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTI-PCREEVFLDLIAS 102

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.98
PLN03220	105	uncharacterized protein; Provisional	99.98
PRK02899	197	adaptor protein; Provisional	88.23
PRK02315	233	adaptor protein; Provisional	84.98
PF05389	220	MecA: Negative regulator of genetic competence (Me	80.36

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=3.8e-37  Score=219.92  Aligned_cols=97  Identities=36%  Similarity=0.611  Sum_probs=85.5

Q ss_pred             CCCHHHHHHHHHHHHHhhhhcccccccccccccccCCCCCccCCCCceEEEeec-CeeeeeccCCcccHHHHHHHHhhhh
Q 046415            1 MLSAKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMD-NRRLVIPVPYLYSDIFRELLRMSEE   79 (126)
Q Consensus         1 m~~~~kL~~~~kkWq~~a~~~rkr~s~~~~~~~~~~~~~~~~vpkG~~~VYVGe-~~RfvVpv~yL~hP~F~~LL~~aee   79 (126)
                      ||+.+|+.++++||++.++..+++.+..++.       ...++|+||||||||+ ++||+||++|||||+|++||++|||
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~-------~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aee   73 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSS-------SESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEE   73 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhccccccccccc-------ccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhh
Confidence            9999999999999999887766554422221       1357899999999997 8999999999999999999999999


Q ss_pred             hcCCCCCCcEEecCcHHHHHHHHhh
Q 046415           80 EFGLPKDGLIMFPCDSFFLEYVVST  104 (126)
Q Consensus        80 EfG~~~~G~L~IPC~~~~Fe~vl~~  104 (126)
                      ||||+++|+|+||||+++|+++|..
T Consensus        74 EfG~~~~G~l~iPC~~~~Fe~~l~~   98 (100)
T PF02519_consen   74 EFGFDQDGPLTIPCDVVLFEHLLWL   98 (100)
T ss_pred             hcCcCCCCcEEeeCCHHHHHHHHHH
Confidence            9999999999999999999999864

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=4.4e-36  Score=216.62  Aligned_cols=91  Identities=23%  Similarity=0.412  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHhhhhcccccccccccccccCCCCCccCCCCceEEEeec-CeeeeeccCCcccHHHHHHHHhhhhhcC
Q 046415            4 AKKLMKMATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMD-NRRLVIPVPYLYSDIFRELLRMSEEEFG   82 (126)
Q Consensus         4 ~~kL~~~~kkWq~~a~~~rkr~s~~~~~~~~~~~~~~~~vpkG~~~VYVGe-~~RfvVpv~yL~hP~F~~LL~~aeeEfG   82 (126)
                      +++|++|.|||+++++.+..           +.+..+.++|+||||||||+ ++||+||++|||||+|++||++||||||
T Consensus        12 ~~~~kq~l~r~~s~~~~~~~-----------~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG   80 (104)
T PLN03090         12 TAMLKQILKRCSSLGKKQGY-----------DEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFG   80 (104)
T ss_pred             HHHHHHHHHHHHHhcccCCc-----------ccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhC
Confidence            57899999999887553211           11134678999999999997 6899999999999999999999999999


Q ss_pred             CCCCCcEEecCcHHHHHHHHhhc
Q 046415           83 LPKDGLIMFPCDSFFLEYVVSTS  105 (126)
Q Consensus        83 ~~~~G~L~IPC~~~~Fe~vl~~~  105 (126)
                      |+++|+|+||||+++|++++...
T Consensus        81 f~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         81 FDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCCcEEEeCCHHHHHHHHHHh
Confidence            99999999999999999999764

>PLN03219 uncharacterized protein; Provisional

Probab=99.98  E-value=1.1e-32  Score=199.96  Aligned_cols=90  Identities=24%  Similarity=0.430  Sum_probs=73.5

Q ss_pred             HHHHHHHhhhhcccccccccccccccCCCCCccCCCCceEEEeec---CeeeeeccCCcccHHHHHHHHhhhhhcCCCC-
Q 046415           10 MATKWQRQLKLEEKRTLLQRSKSFINSNTSPAVADKDHFVACAMD---NRRLVIPVPYLYSDIFRELLRMSEEEFGLPK-   85 (126)
Q Consensus        10 ~~kkWq~~a~~~rkr~s~~~~~~~~~~~~~~~~vpkG~~~VYVGe---~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~-   85 (126)
                      ..+-||.++..+++..+.+..     +++.+.++||||||||||+   ++||+||++|||||+|++||++|||||||++ 
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~   85 (108)
T PLN03219         11 AKQIFKSQSMRNKNGSSSPSS-----STTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHS   85 (108)
T ss_pred             HHHHHHHHHHhcccCCCCCcc-----CCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCC
Confidence            335687666656554332221     1234678999999999996   7999999999999999999999999999997 


Q ss_pred             CCcEEecCcHHHHHHHHhh
Q 046415           86 DGLIMFPCDSFFLEYVVST  104 (126)
Q Consensus        86 ~G~L~IPC~~~~Fe~vl~~  104 (126)
                      +|+|+|||+++.|+++|++
T Consensus        86 ~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         86 MGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCEEEeCCHHHHHHHHHh
Confidence            6999999999999999975

>PLN03220 uncharacterized protein; Provisional

Probab=99.98  E-value=9.5e-33  Score=199.39  Aligned_cols=66  Identities=26%  Similarity=0.529  Sum_probs=62.4

Q ss_pred             CccCCCCceEEEeec-----CeeeeeccCCcccHHHHHHHHhhhhhcCCCC-CCcEEecCcHHHHHHHHhhc
Q 046415           40 PAVADKDHFVACAMD-----NRRLVIPVPYLYSDIFRELLRMSEEEFGLPK-DGLIMFPCDSFFLEYVVSTS  105 (126)
Q Consensus        40 ~~~vpkG~~~VYVGe-----~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~vl~~~  105 (126)
                      +.+|||||||||||+     ++||+||++|||||+|++||++|||||||++ +|+|+||||++.|++++++.
T Consensus        32 ~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s~  103 (105)
T PLN03220         32 SDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASR  103 (105)
T ss_pred             cCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHhh
Confidence            568999999999996     6999999999999999999999999999998 69999999999999999864

>PRK02899 adaptor protein; Provisional

Probab=88.23  E-value=0.42  Score=37.73  Aligned_cols=25  Identities=28%  Similarity=0.692  Sum_probs=22.1

Q ss_pred             cHHHHHHHHhhhhhcCCCCCCcEEe
Q 046415           67 SDIFRELLRMSEEEFGLPKDGLIMF   91 (126)
Q Consensus        67 hP~F~~LL~~aeeEfG~~~~G~L~I   91 (126)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            4578888999999999999999875

>PRK02315 adaptor protein; Provisional

Probab=84.98  E-value=0.72  Score=37.13  Aligned_cols=25  Identities=20%  Similarity=0.477  Sum_probs=22.8

Q ss_pred             cHHHHHHHHhhhhhcCCCCCCcEEe
Q 046415           67 SDIFRELLRMSEEEFGLPKDGLIMF   91 (126)
Q Consensus        67 hP~F~~LL~~aeeEfG~~~~G~L~I   91 (126)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         38 EEFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            4689999999999999999999975

>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation

Probab=80.36  E-value=0.53  Score=37.00  Aligned_cols=25  Identities=32%  Similarity=0.700  Sum_probs=0.0

Q ss_pred             cHHHHHHHHhhhhhcCCCCCCcEEe
Q 046415           67 SDIFRELLRMSEEEFGLPKDGLIMF   91 (126)
Q Consensus        67 hP~F~~LL~~aeeEfG~~~~G~L~I   91 (126)
                      +-+|.++|++|.+|+||..+|+|++
T Consensus        38 e~fF~~ileea~~e~~F~~~~~l~~   62 (220)
T PF05389_consen   38 EEFFYSILEEADEEHGFENDGPLTF   62 (220)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            5789999999999999999999875

It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00