Citrus Sinensis ID: 046416

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
Protein Sequence
MELGSDYLAESGGGSGSGSGLSSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGSGSGRKVRGGGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGGRDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCGGCFTGVADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVTQPVSPHGAAINQYPNMSWGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFSGELESSQQSRQYMKLQHSRDYDDSNQQIHWSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHccHHHHcccccccccccccEEEEccEEEEEEEcccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHccEHHHcccccEEEEcccHHHHHHHcHHHccHHHHcHccHHHHHHHHccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
melgsdylaesgggsgsgsglssaepslnglkfgkkiyfedvgtagapfpgsgsssgsgsgsgsgsgrkvrgggggmvtsgqqpprcqvegckvdlsdakayysrhkvcgmhskspvvtVAGLEQRFCQQCsrfhqlpefdqgkRSCRRRLaghnerrrkptsgpflgtrygrlSSSVienssqgggflidfsayqmvggrdgwpvtsvskqvsgnqttvtarhlpqplwqnhsqdpppdrylqcstagtgfsgpgipcggcftgvadsncalsllsnqpwgsknptpghgvgdlmhahtksvtqpvsphgaainqypnmswgfkgnaagssshqmapqlglaptsvpinsqfsgeleSSQQSRQYMKLQhsrdyddsnqqihwsl
Flexible Loop (DISEMBL)
MELGSDYlaesgggsgsgsglsSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSgsssgsgsgsgsgSGRKVRGGGGGmvtsgqqpprcqVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFhqlpefdqgkrSCRRrlaghnerrrkptsgpflgtryGRLSSSVIENSSQGGGFLIDFSAYQMVGGRDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCGGCFTGVADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVTQPVSPHGAAINQYPNMSWGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFSGELESSQQSRQYMKLQHsrdyddsnqqihwsl
Low Complexity Region (SEG)
MELGSDYLAEsgggsgsgsglssAEPSLNGLKFGKKIYFEDVGTAGAPFPgsgsssgsgsgsgsgsgrkvrgggggmvtsgQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGGRDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCGGCFTGVADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVTQPVSPHGAAINQYPNMSWGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFSGELESSQQSRQYMKLQHSRDYDDSNQQIHWSL
Disordered region (IsUnstruct)
******************************LKFGKKIYFEDVG*********************************************VEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLP**********************************************GGGFLIDFSAYQMVGGRDGWPVTSV********************************YLQCSTAGTGFSGPGIPCGGCFTGVADSNCALSLLSN************************************************************************************************************
Disordered Region (DISOPRED)
*******************************KFGKKIYFED*********************************************CQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRS*******************************************************************************************************************************************************************************************************************************************IHWSL
Disordered Region (DISEMBL)
************************EPSLNGLKFGKKIYFEDVGTAGAPFP************************************CQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGGRDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCGGCFTGVADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVTQPVSPHGAAINQYPNMSWGFKGN********MAPQLGLAPTSVPINSQF*********************************
Disordered Region (DISPRO)
**************************SLNGLKFGKKIYFEDV*****************************************PPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRR****************************************************************************************************************************************************************************************QMAPQLGLAPTSVPINSQFSGELESSQQSR**********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELGSDYLAESGGGSGSGSGLSSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGSGSGRKVRGGGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGGRDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCGGCFTGVADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVTQPVSPHGAAINQYPNMSWGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFSGELESSQQSRQYMKLQHSRDYDDSNQQIHWSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	386	2.2.26 [Sep-21-2011]
Q700W2	375	Squamosa promoter-binding	yes	no	0.878	0.904	0.424	4e-57
A3C057	393	Squamosa promoter-binding	yes	no	0.823	0.809	0.439	8e-55
Q7EXZ2	417	Squamosa promoter-binding	yes	no	0.670	0.621	0.430	4e-47
Q9M2Q6	354	Squamosa promoter-binding	no	no	0.772	0.841	0.367	8e-44
A3A2Z8	469	Squamosa promoter-binding	no	no	0.396	0.326	0.496	1e-33
A2X0Q6	469	Squamosa promoter-binding	N/A	no	0.396	0.326	0.496	1e-33
A2YGR5	475	Squamosa promoter-binding	N/A	no	0.360	0.292	0.513	3e-32
Q5Z818	475	Squamosa promoter-binding	no	no	0.360	0.292	0.513	3e-32
Q9S840	419	Squamosa promoter-binding	no	no	0.347	0.319	0.492	6e-31
Q94JW8	405	Squamosa promoter-binding	no	no	0.261	0.249	0.620	6e-31

>sp|Q700W2|SPL9_ARATH Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2

 Score =  222 bits (565), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 175/412 (42%), Positives = 212/412 (51%), Gaps = 73/412 (17%)

Query: 10  ESGGGSGSGSGLSSAEPSLNG---------LKFGKKIYFEDVGTAGAPFPGSGSSSGSGS 60
           E G  SG G G   AE   +          L FG+KIYFED                  S
Sbjct: 2   EMGSNSGPGHGPGQAESGGSSTESSSFSGGLMFGQKIYFEDG-----------GGGSGSS 50

Query: 61  GSGSGSGRKVRGGGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTV 120
            SG  S R+VRGGG        Q PRCQVEGC +DL++AK YYSRH+VCG+HSK+P VTV
Sbjct: 51  SSGGRSNRRVRGGGS---GQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTV 107

Query: 121 AGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRK--PTSGPFLGTRYGRLSSSV 178
           AG+EQRFCQQCSRFHQLPEFD  KRSCRRRLAGHNERRRK  P S   L +RYGR++ S+
Sbjct: 108 AGIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKPQPASLSVLASRYGRIAPSL 167

Query: 179 IENSSQG--GGFLIDFSAYQMVGGRD-GWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQ 235
            EN   G  G FL         G ++ GWP +          T V  R +  P WQ +  
Sbjct: 168 YENGDAGMNGSFL---------GNQEIGWPSSRTL------DTRVMRRPVSSPSWQIN-- 210

Query: 236 DPPPDRYLQCST--AGTGFSGPGIPCGGC--FTGVADSNCALSLLSN--QPWGSKNPTPG 289
             P + + Q S    GT FS P I       + G+ DSNCALSLLSN  QP  + N    
Sbjct: 211 --PMNVFSQGSVGGGGTSFSSPEIMDTKLESYKGIGDSNCALSLLSNPHQPHDNNNNNNN 268

Query: 290 HGVGDLMHAHTKS------VTQPVSPHGAAINQYPNMSWGFKGNAAGSSSHQMAPQLGLA 343
           +   +       S      VT    P   + +QY N  W FK N      + M+P L L 
Sbjct: 269 NNNNNNNTWRASSGFGPMTVTMAQPPPAPSQHQYLNPPWVFKDN-----DNDMSPVLNLG 323

Query: 344 PTSVPINSQFS-----GELESS----QQSRQYMKLQHSRDYDDSNQQIHWSL 386
             + P N Q S     GE E S    Q  RQYM+ +++R YD S+   +WSL
Sbjct: 324 RYTEPDNCQISSGTAMGEFELSDHHHQSRRQYMEDENTRAYDSSSHHTNWSL 375

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Arabidopsis thaliana (taxid: 3702)

>sp|A3C057|SPL17_ORYSJ Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica GN=SPL17 PE=2 SV=2

 Score =  214 bits (545), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 159/362 (43%), Positives = 195/362 (53%), Gaps = 44/362 (12%)

Query: 28  LNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGSGSGRKVRGGGGGMVTSGQQPPRC 87
           ++GLKFGKKIYFE    A A    S ++  S S S  G G+K +G           PPRC
Sbjct: 19  VHGLKFGKKIYFEQDAAASA----SAAAVESSSTSSGGGGKKGKGVAAAAAPPPPLPPRC 74

Query: 88  QVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSC 147
           QVEGC VDLS  K YY RHKVC MH+K P+V VAGLEQRFCQQCSRFHQLPEFDQ K+SC
Sbjct: 75  QVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSC 134

Query: 148 RRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGG-RDGWPV 206
           RRRLAGHNERRRKPT GP L +RYGRL++S  E   +   F++DFS  ++    RD WP 
Sbjct: 135 RRRLAGHNERRRKPTPGP-LSSRYGRLAASFHEEPGRSRSFVVDFSYPRVPSSVRDAWPA 193

Query: 207 TSVSKQVSGNQTTVTARHLPQPLWQNHSQDPP--------PDRYLQCSTAGTGFSGP--- 255
              S ++SG+             WQ   +  P         D +   S  G+    P   
Sbjct: 194 IQPSDRMSGSIQ-----------WQGGHELHPHRSAVAGYSDHHAFSSHGGSAAGAPMLH 242

Query: 256 ----GIPCGGCFTGVA-DSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSV---TQPV 307
                +  GGC  GVA DS+CALSLLS QPW +   T  H     M +   +      PV
Sbjct: 243 HPAFELTSGGCLAGVATDSSCALSLLSTQPWDTTQSTSSHNRSPPMSSTASAFGGGNNPV 302

Query: 308 SPHGAAINQYPNMSWGFKGNAA---GSSSHQMAPQLGLAPTSVPINS----QFSGELESS 360
           SP   A N Y   S G+  ++    G+ +  + P  G+    VP  S     FSGELE +
Sbjct: 303 SPSVMASN-YMAASPGWNSSSRGHDGARNVHLPPPHGVVLNEVPPGSVHHGHFSGELELA 361

Query: 361 QQ 362
            Q
Sbjct: 362 LQ 363

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7EXZ2|SPL14_ORYSJ Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica GN=SPL14 PE=2 SV=1

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/304 (43%), Positives = 162/304 (53%), Gaps = 45/304 (14%)

Query: 86  RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKR 145
           RCQVEGC  DLS  K YY RHKVC MHSK+P V VAGLEQRFCQQCSRFH LPEFDQGKR
Sbjct: 103 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKR 162

Query: 146 SCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGG-RDGW 204
           SCRRRLAGHNERRR+P +   L +RYGRL++SV E+  +   F +DFS  ++    R+ W
Sbjct: 163 SCRRRLAGHNERRRRPQTP--LASRYGRLAASVGEH-RRFRSFTLDFSYPRVPSSVRNAW 219

Query: 205 PVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTG------------- 251
           P      ++SG               Q H    P       + AG G             
Sbjct: 220 PAIQPGDRISGG-------------IQWHRNVAPHGH--SSAVAGYGANTYSGQGSSSSG 264

Query: 252 ---FSGPGIPCGGCFTGV---ADSNCALSLLSNQPWGSKNPT--PGHGVGDLMHAHTKSV 303
              F+GP +P GGC  GV    DS+CALSLLS QPW +   +    H     M   T   
Sbjct: 265 PPVFAGPNLPPGGCLAGVGAATDSSCALSLLSTQPWDTTTHSAAASHNQAAAMSTTTSFD 324

Query: 304 TQPVSPHGAAINQYPNMSW-GFKGNAAG--SSSHQMAPQLGLAPTS--VPINSQFSGELE 358
             PV+P   A +      W G +G+  G  S +HQ+  ++ L         ++ FSGELE
Sbjct: 325 GNPVAPSAMAGSYMAPSPWTGSRGHEGGGRSVAHQLPHEVSLDEVHPGPSHHAHFSGELE 384

Query: 359 SSQQ 362
            + Q
Sbjct: 385 LALQ 388

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M2Q6|SPL15_ARATH Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana GN=SPL15 PE=2 SV=1

 Score =  178 bits (451), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 142/386 (36%), Positives = 187/386 (48%), Gaps = 88/386 (22%)

Query: 31  LKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGSGSGRKVRGGGGGMVTSGQQPPRCQVE 90
           L+FG+KIYFED                   GSGS S  +V        T+     RCQVE
Sbjct: 27  LRFGQKIYFED-------------------GSGSRSKNRVNTVRKSSTTA-----RCQVE 62

Query: 91  GCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRR 150
           GC++DLS+ KAYYSRHKVC +HSKS  V V+GL QRFCQQCSRFHQL EFD  KRSCRRR
Sbjct: 63  GCRMDLSNVKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKRSCRRR 122

Query: 151 LAGHNERRRKPT-SGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGGRDGWPVTSV 209
           LA HNERRRKP  +     + Y R++ S+  N                       P  ++
Sbjct: 123 LACHNERRRKPQPTTALFTSHYSRIAPSLYGN-----------------------PNAAM 159

Query: 210 SKQVSGNQTT-VTARHL---PQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCGGCFTG 265
            K V G+ T   TAR +   P P   N  ++  P   +    + +  + P +        
Sbjct: 160 IKSVLGDPTAWSTARSVMQRPGPWQINPVRETHPHMNVLSHGSSSFTTCPEM----INNN 215

Query: 266 VADSNCALSLLSN----------QPWGSKNPTPGHGVGDLMHAHTKSVTQ----PVSPHG 311
             DS+CALSLLSN           P  +  P+ G    D M + +  VT     P+S H 
Sbjct: 216 STDSSCALSLLSNSYPIHQQQLQTPTNTWRPSSGF---DSMISFSDKVTMAQPPPISTHQ 272

Query: 312 AAIN---QYPNMSWGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFSG-------ELESSQ 361
             I+   QY + +W        S+SH M+P   ++  S P + Q S        EL   Q
Sbjct: 273 PPISTHQQYLSQTWEVIA-GEKSNSHYMSP---VSQISEPADFQISNGTTMGGFELYLHQ 328

Query: 362 QS-RQYMKLQHSRDYDDSNQQIHWSL 386
           Q  +QYM+ +++R YD S Q  +WSL
Sbjct: 329 QVLKQYMEPENTRAYDSSPQHFNWSL 354

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|A3A2Z8|SPL3_ORYSJ Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 95/161 (59%), Gaps = 8/161 (4%)

Query: 1   MELGSDYLAESGGGSGSGSGLSSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGS 60
           M+ G   + ++G         +  EP L GLK GK+ YFEDV   G     S  S  S +
Sbjct: 104 MDKGKSKVDDTGTSRSPVVAANRVEP-LIGLKLGKRTYFEDV--CGGQNVKSSPSGVSVA 160

Query: 61  GSGSGSGRKVRGGGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTV 120
               G  +KV+     +     Q P CQVEGC VDLS AK Y+ +H+VC  HSK+  V V
Sbjct: 161 TPSPGLAKKVK-----VAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIV 215

Query: 121 AGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 161
           AGLE+RFCQQCSRFH L EFDQ KRSCRRRL  HN RRRKP
Sbjct: 216 AGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKP 256

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X0Q6|SPL3_ORYSI Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 95/161 (59%), Gaps = 8/161 (4%)

Query: 1   MELGSDYLAESGGGSGSGSGLSSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGS 60
           M+ G   + ++G         +  EP L GLK GK+ YFEDV   G     S  S  S +
Sbjct: 104 MDKGKSKVDDTGTSRSPVVAANRVEP-LIGLKLGKRTYFEDV--CGGQNVKSSPSGVSVA 160

Query: 61  GSGSGSGRKVRGGGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTV 120
               G  +KV+     +     Q P CQVEGC VDLS AK Y+ +H+VC  HSK+  V V
Sbjct: 161 TPSPGLAKKVK-----VAQQNTQNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIV 215

Query: 121 AGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 161
           AGLE+RFCQQCSRFH L EFDQ KRSCRRRL  HN RRRKP
Sbjct: 216 AGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKP 256

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 91/148 (61%), Gaps = 9/148 (6%)

Query: 14  GSGSGSGLSSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGSGSGRKVRGG 73
           G+     +S  EP + GLK GK+ YFE+V   G     S ++SG    S      KV   
Sbjct: 116 GTSPAVAVSHGEPVI-GLKLGKRTYFENV-CGGQNVKSSSAASGVTCPSTVVKKMKVS-- 171

Query: 74  GGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSR 133
                    Q   CQVEGCKVDLS A+ Y+ +HKVC  HSK+P V V+GLE+RFCQQCSR
Sbjct: 172 -----QQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSR 226

Query: 134 FHQLPEFDQGKRSCRRRLAGHNERRRKP 161
           FH L EFDQ K+SCRRRL+ HN RRRKP
Sbjct: 227 FHGLAEFDQKKKSCRRRLSDHNARRRKP 254

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z818|SPL12_ORYSJ Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 91/148 (61%), Gaps = 9/148 (6%)

Query: 14  GSGSGSGLSSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGSGSGRKVRGG 73
           G+     +S  EP + GLK GK+ YFE+V   G     S ++SG    S      KV   
Sbjct: 116 GTSPAVAVSHGEPVI-GLKLGKRTYFENV-CGGQNVKSSSAASGVTCPSTVVKKMKVS-- 171

Query: 74  GGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSR 133
                    Q   CQVEGCKVDLS A+ Y+ +HKVC  HSK+P V V+GLE+RFCQQCSR
Sbjct: 172 -----QQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSR 226

Query: 134 FHQLPEFDQGKRSCRRRLAGHNERRRKP 161
           FH L EFDQ K+SCRRRL+ HN RRRKP
Sbjct: 227 FHGLAEFDQKKKSCRRRLSDHNARRRKP 254

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S840|SPL2_ARATH Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1

 Score =  135 bits (340), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 70/142 (49%), Positives = 85/142 (59%), Gaps = 8/142 (5%)

Query: 23  SAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGSGSGRKVRGGGGGMVTSGQ 82
           S +P L GLK GK+ YFED       F    ++ G G      S           +    
Sbjct: 113 SGDPVL-GLKLGKRTYFED-------FWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRL 164

Query: 83  QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQ 142
           Q P CQVEGC +DLS AK Y+ +H++C  HSK P V V+G+E+RFCQQCSRFH L EFD+
Sbjct: 165 QTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDE 224

Query: 143 GKRSCRRRLAGHNERRRKPTSG 164
            KRSCRRRL+ HN RRRKP  G
Sbjct: 225 KKRSCRRRLSDHNARRRKPNPG 246

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2

 Score =  135 bits (339), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 74/108 (68%), Gaps = 7/108 (6%)

Query: 83  QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQ 142
           Q P CQV GC  DLS +K Y+ RH+VC  HSK+ VV V GLEQRFCQQCSRFH L EFD 
Sbjct: 120 QNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDD 179

Query: 143 GKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSS-------VIENSS 183
           GKRSCRRRLAGHNERRRKP      G R+  L +S        +ENSS
Sbjct: 180 GKRSCRRRLAGHNERRRKPAFYFLPGKRHKLLRTSQDVVGNKFLENSS 227

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
219879366	388	squamosa promoter-binding protein [Citru	1.0	0.994	0.971	0.0
295815790	378	promoter-binding protein SPL9 [Vitis vin	0.909	0.928	0.639	1e-120
359482183	379	PREDICTED: promoter-binding protein SPL9	0.909	0.926	0.645	1e-120
297739854	349	unnamed protein product [Vitis vinifera]	0.847	0.936	0.631	1e-119
224137894	375	hypothetical protein POPTRDRAFT_576281 [	0.963	0.992	0.601	1e-114
255583154	349	LIGULELESS1 protein, putative [Ricinus c	0.808	0.893	0.662	1e-109
302399057	381	SPL domain class transcription factor [M	0.909	0.921	0.595	1e-102
449501903	382	PREDICTED: squamosa promoter-binding-lik	0.974	0.984	0.556	2e-99
449437593	382	PREDICTED: squamosa promoter-binding-lik	0.974	0.984	0.556	5e-99
363413074	380	SQUAMOSA promoter binding protein-like p	0.901	0.915	0.573	4e-98

>gi|219879366|gb|ACL51015.1| squamosa promoter-binding protein [Citrus trifoliata]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/388 (97%), Positives = 377/388 (97%), Gaps = 2/388 (0%)

Query: 1   MELGSDYLAESGGGSGSGSGLSS--AEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGS 58
           MELGSDYLAESGGGSGSGSG     AEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGS
Sbjct: 1   MELGSDYLAESGGGSGSGSGSGLSSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGS 60

Query: 59  GSGSGSGSGRKVRGGGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVV 118
           GSGSGSGSGRKVRG GGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVV
Sbjct: 61  GSGSGSGSGRKVRGVGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVV 120

Query: 119 TVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSV 178
           TVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSV
Sbjct: 121 TVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSV 180

Query: 179 IENSSQGGGFLIDFSAYQMVGGRDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPP 238
           IENSSQGGGFLIDFSAYQMVGGRDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPP
Sbjct: 181 IENSSQGGGFLIDFSAYQMVGGRDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPP 240

Query: 239 PDRYLQCSTAGTGFSGPGIPCGGCFTGVADSNCALSLLSNQPWGSKNPTPGHGVGDLMHA 298
           PDRYLQCSTAGTGFSGPGIPCGGCFTGVADSNCALSLLSNQPWGSKN T GHGVGDLMHA
Sbjct: 241 PDRYLQCSTAGTGFSGPGIPCGGCFTGVADSNCALSLLSNQPWGSKNQTLGHGVGDLMHA 300

Query: 299 HTKSVTQPVSPHGAAINQYPNMSWGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFSGELE 358
           HTKSV QPVSP GAAINQYPNMSWGFKGN AGSSSHQMAPQLGLAPTSVPINSQFSGELE
Sbjct: 301 HTKSVAQPVSPRGAAINQYPNMSWGFKGNEAGSSSHQMAPQLGLAPTSVPINSQFSGELE 360

Query: 359 SSQQSRQYMKLQHSRDYDDSNQQIHWSL 386
           SSQQSRQYMKLQHSRDYDDSNQQIHWSL
Sbjct: 361 SSQQSRQYMKLQHSRDYDDSNQQIHWSL 388

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295815790|gb|ADG36380.1| promoter-binding protein SPL9 [Vitis vinifera]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/366 (63%), Positives = 261/366 (71%), Gaps = 15/366 (4%)

Query: 28  LNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGS-----GSGRKVRGGGGGMVTSGQ 82
           LNGLKFG+KIYFED+G  GAP      SS S +            +KVRG G   V  G 
Sbjct: 21  LNGLKFGQKIYFEDLGV-GAPAKSGTGSSSSSAAGSGGRPPPAPPKKVRGSG---VVQGG 76

Query: 83  QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQ 142
           QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSP V VAGLEQRFCQQCSRFHQL EFDQ
Sbjct: 77  QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLEQRFCQQCSRFHQLAEFDQ 136

Query: 143 GKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQ-GGGFLIDFSAYQMVGGR 201
           GKRSCRRRLAGHNERRRKP  G  L +RYGRLSSS+ ENSS+ GGGFL+DF+AY     R
Sbjct: 137 GKRSCRRRLAGHNERRRKPPPGSLLSSRYGRLSSSIFENSSRVGGGFLMDFAAYPRHPER 196

Query: 202 DGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCGG 261
           D WP T  S +V GNQTT   R LP P WQ++S++P    +LQ S  GT F GPGIP G 
Sbjct: 197 DTWPTTRASDRVPGNQTTAMGRFLPHP-WQSNSENP---LFLQGSAGGTSFHGPGIPSGE 252

Query: 262 CFTGVADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVTQPVSPHGAAINQYPNMS 321
           CFTG +DS+CALSLLSNQPW S+N   G G    M+    S+ QP +PH AAIN +P+ S
Sbjct: 253 CFTGASDSSCALSLLSNQPWSSRNRASGLGANSFMNPEGASMAQPTAPHSAAINHFPSTS 312

Query: 322 WGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFSGELESSQQS-RQYMKLQHSRDYDDSNQ 380
           W FKGN   SSS +M P LGL   S PINSQFSG  E  QQS RQYM+L+HSR YD S Q
Sbjct: 313 WDFKGNEGSSSSQEMPPDLGLGQISQPINSQFSGGGELPQQSGRQYMELEHSRAYDSSTQ 372

Query: 381 QIHWSL 386
           Q+HWSL
Sbjct: 373 QMHWSL 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482183|ref|XP_002278512.2| PREDICTED: promoter-binding protein SPL9 [Vitis vinifera]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/367 (64%), Positives = 264/367 (71%), Gaps = 16/367 (4%)

Query: 28  LNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGS------GSGRKVRGGGGGMVTSG 81
           LNGLKFG+KIYFED+G  GAP      SS S S +GS         +KVRG G   V  G
Sbjct: 21  LNGLKFGQKIYFEDLGV-GAPAKSGTGSSSSSSAAGSGGRPPPAPPKKVRGSG---VVQG 76

Query: 82  QQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFD 141
            QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSP V VAGLEQRFCQQCSRFHQL EFD
Sbjct: 77  GQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLEQRFCQQCSRFHQLAEFD 136

Query: 142 QGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQ-GGGFLIDFSAYQMVGG 200
           QGKRSCRRRLAGHNERRRKP  G  L +RYGRLSSS+ ENSS+ GGGFL+DF+AY     
Sbjct: 137 QGKRSCRRRLAGHNERRRKPPPGSLLSSRYGRLSSSIFENSSRVGGGFLMDFAAYPRHPE 196

Query: 201 RDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCG 260
           RD WP T  S +V GNQTT   R LP P WQ++S++P    +LQ S  GT F GPGIP G
Sbjct: 197 RDTWPTTRASDRVPGNQTTAMGRFLPHP-WQSNSENP---LFLQGSAGGTSFHGPGIPSG 252

Query: 261 GCFTGVADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVTQPVSPHGAAINQYPNM 320
            CFTG +DS+CALSLLSNQPW S+N   G G    M+    S+ QP +PH AAIN +P+ 
Sbjct: 253 ECFTGASDSSCALSLLSNQPWSSRNRASGLGANSFMNPEGASMAQPTAPHSAAINHFPST 312

Query: 321 SWGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFSGELESSQQS-RQYMKLQHSRDYDDSN 379
           SW FKGN   SSS +M P LGL   S PINSQFSG  E  QQS RQYM+L+HSR YD S 
Sbjct: 313 SWDFKGNEGSSSSQEMPPDLGLGQISQPINSQFSGGGELPQQSGRQYMELEHSRAYDSST 372

Query: 380 QQIHWSL 386
           QQ+HWSL
Sbjct: 373 QQMHWSL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739854|emb|CBI30036.3| unnamed protein product [Vitis vinifera]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/361 (63%), Positives = 253/361 (70%), Gaps = 34/361 (9%)

Query: 28  LNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGSGSGRKVRGGGGGMVTSGQQPPRC 87
           LNGLKFG+KIYFED+G                         KVRG G   V  G QPPRC
Sbjct: 21  LNGLKFGQKIYFEDLG-------------------------KVRGSG---VVQGGQPPRC 52

Query: 88  QVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSC 147
           QVEGCKVDLSDAKAYYSRHKVCGMHSKSP V VAGLEQRFCQQCSRFHQL EFDQGKRSC
Sbjct: 53  QVEGCKVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLEQRFCQQCSRFHQLAEFDQGKRSC 112

Query: 148 RRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQ-GGGFLIDFSAYQMVGGRDGWPV 206
           RRRLAGHNERRRKP  G  L +RYGRLSSS+ ENSS+ GGGFL+DF+AY     RD WP 
Sbjct: 113 RRRLAGHNERRRKPPPGSLLSSRYGRLSSSIFENSSRVGGGFLMDFAAYPRHPERDTWPT 172

Query: 207 TSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCGGCFTGV 266
           T  S +V GNQTT   R LP P WQ++S++P    +LQ S  GT F GPGIP G CFTG 
Sbjct: 173 TRASDRVPGNQTTAMGRFLPHP-WQSNSENP---LFLQGSAGGTSFHGPGIPSGECFTGA 228

Query: 267 ADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVTQPVSPHGAAINQYPNMSWGFKG 326
           +DS+CALSLLSNQPW S+N   G G    M+    S+ QP +PH AAIN +P+ SW FKG
Sbjct: 229 SDSSCALSLLSNQPWSSRNRASGLGANSFMNPEGASMAQPTAPHSAAINHFPSTSWDFKG 288

Query: 327 NAAGSSSHQMAPQLGLAPTSVPINSQFSGELESSQQS-RQYMKLQHSRDYDDSNQQIHWS 385
           N   SSS +M P LGL   S PINSQFSG  E  QQS RQYM+L+HSR YD S QQ+HWS
Sbjct: 289 NEGSSSSQEMPPDLGLGQISQPINSQFSGGGELPQQSGRQYMELEHSRAYDSSTQQMHWS 348

Query: 386 L 386
           L
Sbjct: 349 L 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137894|ref|XP_002322678.1| hypothetical protein POPTRDRAFT_576281 [Populus trichocarpa] gi|222867308|gb|EEF04439.1| hypothetical protein POPTRDRAFT_576281 [Populus trichocarpa]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/389 (60%), Positives = 262/389 (67%), Gaps = 17/389 (4%)

Query: 1   MELGSDYLAESGGGSGSGSGLSSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGS 60
           ME+ S  L ES     + +  S    S+NGLKFGKKIYFED    GAP      +  S S
Sbjct: 1   MEMDSGSLTESA----TSNATSPPAESVNGLKFGKKIYFEDHVGVGAP--AKSGTGSSSS 54

Query: 61  GSGSGSGRKVRGGGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTV 120
           GSGSGS RK +GG        QQPPRCQVEGCKVDLSDAK YYSRHKVC MHSKSP V V
Sbjct: 55  GSGSGSSRKAQGG------QHQQPPRCQVEGCKVDLSDAKTYYSRHKVCSMHSKSPRVIV 108

Query: 121 AGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIE 180
           AGL QRFCQQCSRFH LPEFDQGKRSCRRRLAGHNERRRKP SG  L  R+GR S S+ +
Sbjct: 109 AGLVQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKPPSGSVLSARHGRFSPSLFD 168

Query: 181 NSSQGGGFLIDFSAYQMVGGRDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPD 240
           NSS+ GG L+DFSAY    GRDGWP    S+   GN T  T R +   +WQ  SQ+PP +
Sbjct: 169 NSSRAGGLLVDFSAYPRHTGRDGWPAARSSELTPGNDTAATGRSISH-MWQISSQNPPSN 227

Query: 241 RYLQCSTAGTGFSGPGIPCGGCFTGVA--DSNCALSLLSNQPWGSKNPTPGHGVGDLMHA 298
             LQ ST GTG    GIP G CFTGVA  DS+CALSLLSNQPWGS N      V DL  A
Sbjct: 228 LCLQGSTGGTGLFSSGIPPGECFTGVAVSDSSCALSLLSNQPWGSTNRASSLAVNDLFSA 287

Query: 299 HTKSVTQPVSPHGAAINQYPNMSWGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFSGELE 358
               V Q  + HGAA+NQYP + W FK N   +SSH+M P LGL   S+P+NSQ +G+LE
Sbjct: 288 EEAPVVQSTAHHGAAVNQYP-IPWSFKSNEGSNSSHEMCPDLGLGQISMPLNSQLAGQLE 346

Query: 359 SSQQS-RQYMKLQHSRDYDDSNQQIHWSL 386
            SQQ+ RQYM L+HSR YD S Q IHWSL
Sbjct: 347 QSQQNRRQYMDLEHSRAYDSSTQHIHWSL 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583154|ref|XP_002532343.1| LIGULELESS1 protein, putative [Ricinus communis] gi|223527960|gb|EEF30045.1| LIGULELESS1 protein, putative [Ricinus communis]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/323 (66%), Positives = 240/323 (74%), Gaps = 11/323 (3%)

Query: 67  GRKVRGGGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQR 126
            RKV GG        QQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSP V VAGLEQR
Sbjct: 35  ARKVHGGQ-------QQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPKVIVAGLEQR 87

Query: 127 FCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGG 186
           FCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP  G  L +RY RLSS+V +NSS+ G
Sbjct: 88  FCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLLSSRYSRLSSTVFDNSSRAG 147

Query: 187 GFLIDFSAYQMVGGRDGWPVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCS 246
           GFL+DFSAY  +  RD WP    S++V GN TT   R +P P WQ  SQ+PP + YLQ S
Sbjct: 148 GFLVDFSAYPRLSARDAWPSARPSERVPGNHTTGAGRSIPNP-WQTSSQNPPSNLYLQGS 206

Query: 247 TAGTGFSGPGIPCGGCFTGV--ADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVT 304
            +GTGFS    P G CFTGV  ADS+CALSLLSNQPWGS+N   G GV +L+      + 
Sbjct: 207 ASGTGFSSSENPSGECFTGVSIADSSCALSLLSNQPWGSRNQASGLGVKNLVDPQGAPLA 266

Query: 305 QPVSPHGAAINQYPNMSWGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFSGELESSQQS- 363
           Q  +PHGAA+NQYPN SWGFKG+ AGSSSH+M P LGL   S P N  F+GELE SQQ+ 
Sbjct: 267 QSTNPHGAAVNQYPNPSWGFKGSEAGSSSHEMCPDLGLGQISQPPNGHFAGELELSQQNR 326

Query: 364 RQYMKLQHSRDYDDSNQQIHWSL 386
           RQYM+L HSR YD S Q ++WSL
Sbjct: 327 RQYMELDHSRAYDSSTQHMNWSL 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399057|gb|ADL36823.1| SPL domain class transcription factor [Malus x domestica]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/363 (59%), Positives = 249/363 (68%), Gaps = 12/363 (3%)

Query: 28  LNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGSGSGRKVRGGGGGMVTSGQQPPRC 87
           LNGLKFG+KIYFED G  GA    S  S+   S +G+   +K RGGG     +  QPPRC
Sbjct: 27  LNGLKFGRKIYFED-GGFGALHKSSCGSAAGSSSAGATPPKKQRGGG-----NLGQPPRC 80

Query: 88  QVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSC 147
           QVEGC+VDLS AKAYYSRHKVCG+HSK+P V VAGLEQRFCQQCSRFH LPEFDQGKRSC
Sbjct: 81  QVEGCEVDLSGAKAYYSRHKVCGLHSKTPTVIVAGLEQRFCQQCSRFHLLPEFDQGKRSC 140

Query: 148 RRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGGRD--GWP 205
           RRRLAGHNERRRKP  G  L TR GRLSSS+ ENSS+ G FL+DF+AY    GRD     
Sbjct: 141 RRRLAGHNERRRKPPPGSILSTR-GRLSSSLYENSSRIGSFLMDFTAYPRFSGRDTWTTT 199

Query: 206 VTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCGGCFTG 265
            T  S++   NQ    A    Q  WQ++S+      YLQ S  GT + GPGIP G C T 
Sbjct: 200 TTRTSERAPVNQNANDAGKFLQQPWQSNSEISTSGFYLQGSAGGTSYPGPGIPPGECVTV 259

Query: 266 VADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVTQPVSPHGAAINQYPNMSWGFK 325
           V DS+CALSLLSNQPWGS+N   G G+  LM+     V QPV PH A  N +P  SWGFK
Sbjct: 260 VTDSSCALSLLSNQPWGSRNRVLGAGMNSLMNTQGVPVAQPV-PHSATSNHFPTTSWGFK 318

Query: 326 GNAAGSSSHQMAPQLGLAPTSVPINSQFSGELESSQQSR--QYMKLQHSRDYDDSNQQIH 383
           GN  GSSSH M P LGL   S P++SQ+SG LE SQQ R  Q+M+L H+R YD ++QQ+H
Sbjct: 319 GNENGSSSHGMLPDLGLGQISQPLSSQYSGVLELSQQGRRQQHMELGHTRGYDSTSQQMH 378

Query: 384 WSL 386
           WSL
Sbjct: 379 WSL 381

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501903|ref|XP_004161490.1| PREDICTED: squamosa promoter-binding-like protein 17-like [Cucumis sativus]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 218/392 (55%), Positives = 261/392 (66%), Gaps = 16/392 (4%)

Query: 1   MELGSDYLAESGGGSGSGSGLSSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGS 60
           ME+    L ESGG S S    SSAE SLNGLKFG+KIYFEDVG    P    G S  S +
Sbjct: 1   MEMDCSSLTESGGSSNSSPPNSSAE-SLNGLKFGQKIYFEDVGIGELP-KSGGGSFSSSA 58

Query: 61  GSGSGSGRKVRGGGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTV 120
              S   +K RGG    V    QPPRCQVEGC+VDL+DAKAYYSRHKVC MHSKSP V V
Sbjct: 59  VIASTPTKKPRGG----VVQAAQPPRCQVEGCRVDLTDAKAYYSRHKVCTMHSKSPKVIV 114

Query: 121 AGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIE 180
           AGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP  G  L TRYGR SSS+ E
Sbjct: 115 AGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLLSTRYGRFSSSIFE 174

Query: 181 NSSQGGGFLIDFSAYQMVGGRDGWPV-TSVSKQVSGN-QTTVTARHLPQPLWQNHSQDPP 238
           NS++ G FL+DFSAY  + G+D W   T  S++V GN   +   +++P P WQ++S++  
Sbjct: 175 NSNRVGSFLMDFSAYPKLAGKDVWSTGTKASERVPGNPNVSSMGKYVPHP-WQSNSENNQ 233

Query: 239 PDRYLQCSTAGTGFSGPGIPCGG-CFTGVADSNCALSLLSNQPWGSKNPTPGHGVGDLMH 297
           P+  L  S +GT FSGPG P GG C   V DS+CALSLLSN+ WGS+N T    V  L++
Sbjct: 234 PELLLPVSASGTSFSGPGNPSGGECINSVTDSSCALSLLSNESWGSRNRTTTIEVNALLN 293

Query: 298 AHTKSVTQPVSPHGAAINQYPNMSWGFKGNAAGSSSHQ-MAPQLGLA-PTSVPINSQFSG 355
           A    V Q  +   AA N +P MSWGFKGN A +SS + +   LGL    S  + S FSG
Sbjct: 294 AEGTLVAQTTA--DAATNHFPTMSWGFKGNEAPTSSFRDLTSDLGLNHQVSHALTSSFSG 351

Query: 356 ELESSQQSRQ-YMKLQHSRDYDDSNQQIHWSL 386
           +++    +R+ YM+L HS  + DS Q +HWSL
Sbjct: 352 DVQFPHLARRPYMELGHSGAF-DSTQHLHWSL 382

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437593|ref|XP_004136576.1| PREDICTED: squamosa promoter-binding-like protein 17-like [Cucumis sativus]

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 218/392 (55%), Positives = 260/392 (66%), Gaps = 16/392 (4%)

Query: 1   MELGSDYLAESGGGSGSGSGLSSAEPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGS 60
           ME+    L ESGG S S    SSAE SLNGLKFG+KIYFEDVG    P    G S  S +
Sbjct: 1   MEMDCSSLTESGGSSNSSPPNSSAE-SLNGLKFGQKIYFEDVGIGELP-KSGGGSFSSSA 58

Query: 61  GSGSGSGRKVRGGGGGMVTSGQQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTV 120
              S   +K RGG    V    QPPRCQVEGC+VDL+DAKAYYSRHKVC MHSKSP V V
Sbjct: 59  VIASTPTKKPRGG----VVQAAQPPRCQVEGCRVDLTDAKAYYSRHKVCTMHSKSPKVIV 114

Query: 121 AGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIE 180
           AGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP  G  L TRYGR SSS+ E
Sbjct: 115 AGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLLSTRYGRFSSSIFE 174

Query: 181 NSSQGGGFLIDFSAYQMVGGRDGWPV-TSVSKQVSGN-QTTVTARHLPQPLWQNHSQDPP 238
           NS++ G FL+DFSAY  + G+D W   T  S++V GN   +   +++P P WQ++S++  
Sbjct: 175 NSNRVGSFLMDFSAYPKLAGKDVWSTGTKASERVPGNPNVSSMGKYVPHP-WQSNSENNQ 233

Query: 239 PDRYLQCSTAGTGFSGPGIPCGG-CFTGVADSNCALSLLSNQPWGSKNPTPGHGVGDLMH 297
           P+  L  S  GT FSGPG P GG C   V DS+CALSLLSN+ WGS+N T    V  L++
Sbjct: 234 PELLLPVSAGGTSFSGPGNPSGGECINSVTDSSCALSLLSNESWGSRNRTTTIEVNALLN 293

Query: 298 AHTKSVTQPVSPHGAAINQYPNMSWGFKGNAAGSSSHQ-MAPQLGLA-PTSVPINSQFSG 355
           A    V Q  +   AA N +P MSWGFKGN A +SS + +   LGL    S  + S FSG
Sbjct: 294 AEGTLVAQTTA--DAATNHFPTMSWGFKGNEAPTSSFRDLTSDLGLNHQVSHALTSSFSG 351

Query: 356 ELESSQQSRQ-YMKLQHSRDYDDSNQQIHWSL 386
           +++    +R+ YM+L HS  + DS Q +HWSL
Sbjct: 352 DVQFPHLARRPYMELGHSGAF-DSTQHLHWSL 382

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363413074|gb|AEW23126.1| SQUAMOSA promoter binding protein-like protein [Fragaria x ananassa]

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 211/368 (57%), Positives = 252/368 (68%), Gaps = 20/368 (5%)

Query: 25  EPSLNGLKFGKKIYFEDVGTAGAPFPGSGSSSGSGSGSGSGSGRKVRGGGGGMVTSGQQP 84
           + SL+GLKFG+KIYFED         G+ +   SGS S +G+ ++   GGGG V  GQ P
Sbjct: 27  DDSLHGLKFGRKIYFED---------GTLAPPKSGSSSSAGAKKQRSSGGGGFVHHGQ-P 76

Query: 85  PRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGK 144
           PRCQVEGC VDLSD KAYYSRHKVC MHSK+P V VAGLEQRFCQQCSRFHQLPEFDQGK
Sbjct: 77  PRCQVEGCNVDLSDVKAYYSRHKVCAMHSKTPTVVVAGLEQRFCQQCSRFHQLPEFDQGK 136

Query: 145 RSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGGRDGW 204
           RSCRRRLAGHNERRRKP  G  + TR+GRLSSS+ ENS+Q G FL+DF+AY    GRD W
Sbjct: 137 RSCRRRLAGHNERRRKPQPGSMMSTRFGRLSSSIYENSNQVGSFLMDFTAYPR-DGRDAW 195

Query: 205 PVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAGTGFSGPGIPCGGCFT 264
                S++   NQT        Q  WQ++ ++   + YLQ S  GT + GPGIP G C T
Sbjct: 196 ATARTSERPPANQTVTATGKFLQHQWQSNPENNRSNLYLQGSAGGTSYPGPGIPPGECVT 255

Query: 265 GVADSNCALSLLSNQPWGSKNPTPGHGVGDLMHAHTKSVTQPVSPHGAAINQYPNMSWGF 324
           GV DS+CALSLLS+QPW S+N   G G    ++     + Q ++  G  +N +P  SWGF
Sbjct: 256 GVTDSSCALSLLSSQPWASRN--RGVGTNAFLNTQGAPMAQSIANAG-PVNPFPTTSWGF 312

Query: 325 KGNAAGSSSHQMAPQLGLAPTSVPINSQFSGELESSQQSR--QYMKLQ----HSRDYDDS 378
           KGN AGSSSH+M P LGL   S P+NS +SGELE SQQ R  Q M+L+    +SR YD S
Sbjct: 313 KGNEAGSSSHEMLPDLGLGQFSQPLNSHYSGELELSQQGRRQQNMELRNSRGYSRGYDSS 372

Query: 379 NQQIHWSL 386
           +QQIHWSL
Sbjct: 373 SQQIHWSL 380

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.826	0.850	0.420	6.8e-56
TAIR|locus:2095793	354	SPL15 "squamosa promoter bindi	0.248	0.271	0.690	1.3e-44
TAIR|locus:2169248	419	SPL2 "squamosa promoter bindin	0.212	0.195	0.658	2.3e-31
TAIR|locus:2015999	393	SPL11 "squamosa promoter-like	0.209	0.206	0.658	8.6e-30
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.256	0.244	0.643	3.4e-29
TAIR|locus:2087105	181	SPL5 "squamosa promoter bindin	0.259	0.552	0.596	5.6e-29
TAIR|locus:2159717	359	SPL13A "SQUAMOSA PROMOTER-BIND	0.329	0.353	0.5	5e-28
TAIR|locus:2832472	359	SPL13B "SQUAMOSA PROMOTER-BIND	0.329	0.353	0.5	5e-28
TAIR|locus:2057656	131	SPL3 "squamosa promoter bindin	0.199	0.587	0.701	1.7e-27
TAIR|locus:504956101	333	SPL8 "squamosa promoter bindin	0.196	0.228	0.723	3.5e-27

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 161/383 (42%), Positives = 200/383 (52%)

Query:    30 GLKFGKKIYFEDVGTAGAPFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQPPRCQV 89
             GL FG+KIYFED G  G+                                   Q PRCQV
Sbjct:    31 GLMFGQKIYFED-GGGGS-------------GSSSSGGRSNRRVRGGGSGQSGQIPRCQV 76

Query:    90 EGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRR 149
             EGC +DL++AK YYSRH+VCG+HSK+P VTVAG+EQRFCQQCSRFHQLPEFD  KRSCRR
Sbjct:    77 EGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRSCRR 136

Query:   150 RLAGHNERRRKP--TSGPFLGTRYGRLSSSVIENSSQG--GGFLIDFSAYQMVGGRD-GW 204
             RLAGHNERRRKP   S   L +RYGR++ S+ EN   G  G FL         G ++ GW
Sbjct:   137 RLAGHNERRRKPQPASLSVLASRYGRIAPSLYENGDAGMNGSFL---------GNQEIGW 187

Query:   205 PVTSVSKQVSGNQTTVTARHLPQPLWQNHSQDPPPDRYLQCSTAG--TGFSGPGIPCGGC 262
             P    S+ +    T V  R +  P WQ +    P + + Q S  G  T FS P I     
Sbjct:   188 PS---SRTLD---TRVMRRPVSSPSWQIN----PMNVFSQGSVGGGGTSFSSPEIMDTKL 237

Query:   263 --FTGVADSNCALSLLSN--QPW--GSKNPTPGHGVGDLMHAHT----KSVTQPVSPHGA 312
               + G+ DSNCALSLLSN  QP    + N    +   +   A +     +VT    P   
Sbjct:   238 ESYKGIGDSNCALSLLSNPHQPHDNNNNNNNNNNNNNNTWRASSGFGPMTVTMAQPPPAP 297

Query:   313 AINQYPNMSWGFKGNAAGSSSHQMAPQLGLAPTSVPINSQFS-----GELESS----QQS 363
             + +QY N  W FK N      + M+P L L   + P N Q S     GE E S    Q  
Sbjct:   298 SQHQYLNPPWVFKDN-----DNDMSPVLNLGRYTEPDNCQISSGTAMGEFELSDHHHQSR 352

Query:   364 RQYMKLQHSRDYDDSNQQIHWSL 386
             RQYM+ +++R YD S+   +WSL
Sbjct:   353 RQYMEDENTRAYDSSSHHTNWSL 375

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2095793 SPL15 "squamosa promoter binding protein-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
 Identities = 67/97 (69%), Positives = 75/97 (77%)

Query:    86 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKR 145
             RCQVEGC++DLS+ KAYYSRHKVC +HSKS  V V+GL QRFCQQCSRFHQL EFD  KR
Sbjct:    58 RCQVEGCRMDLSNVKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKR 117

Query:   146 SCRRRLAGHNERRRKPTSGPFLGT-RYGRLSSSVIEN 181
             SCRRRLA HNERRRKP     L T  Y R++ S+  N
Sbjct:   118 SCRRRLACHNERRRKPQPTTALFTSHYSRIAPSLYGN 154

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0008361 "regulation of cell size" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2169248 SPL2 "squamosa promoter binding protein-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 54/82 (65%), Positives = 64/82 (78%)

Query:    83 QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQ 142
             Q P CQVEGC +DLS AK Y+ +H++C  HSK P V V+G+E+RFCQQCSRFH L EFD+
Sbjct:   165 QTPHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDE 224

Query:   143 GKRSCRRRLAGHNERRRKPTSG 164
              KRSCRRRL+ HN RRRKP  G
Sbjct:   225 KKRSCRRRLSDHNARRRKPNPG 246

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2015999 SPL11 "squamosa promoter-like 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 54/82 (65%), Positives = 67/82 (81%)

Query:    85 PRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGK 144
             PRCQ++GC++DLS AK Y+ +HKVC  HSK P V+V+GLE+RFCQQCSRFH + EFD+ K
Sbjct:   173 PRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQCSRFHAVSEFDEKK 232

Query:   145 RSCRRRLAGHNERRRKPTSGPF 166
             RSCR+RL+ HN RRRKP  G F
Sbjct:   233 RSCRKRLSHHNARRRKP-QGVF 253

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 65/101 (64%), Positives = 71/101 (70%)

Query:    83 QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQ 142
             Q P CQV GC  DLS +K Y+ RH+VC  HSK+ VV V GLEQRFCQQCSRFH L EFD 
Sbjct:   120 QNPLCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDD 179

Query:   143 GKRSCRRRLAGHNERRRKPTSGPFLGTRYG--RLSSSVIEN 181
             GKRSCRRRLAGHNERRRKP      G R+   R S  V+ N
Sbjct:   180 GKRSCRRRLAGHNERRRKPAFYFLPGKRHKLLRTSQDVVGN 220

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 62/104 (59%), Positives = 76/104 (73%)

Query:    84 PPR-CQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQ 142
             P R CQV+ C V+L++AK YY RH+VC +H+K+   TVAG+ QRFCQQCSRFH+LPEFD+
Sbjct:    59 PSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDE 118

Query:   143 GKRSCRRRLAGHNERRRKPTSGPFLGTRYGR--LSSSVIENSSQ 184
              KRSCRRRLAGHNERRRK  SG   G   GR   S  +I+   +
Sbjct:   119 AKRSCRRRLAGHNERRRK-ISGDSFGEGSGRRGFSGQLIQTQER 161

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 70/140 (50%), Positives = 85/140 (60%)

Query:    83 QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQ 142
             Q P C V+GC  D S+ + Y+ RHKVC +HSK+PVVT+ G +QRFCQQCSRFH L EFD+
Sbjct:    97 QMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDE 156

Query:   143 GKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGGRD 202
             GKRSCR+RL GHN RRRKP   P      GR ++       QG   L++FS     GG  
Sbjct:   157 GKRSCRKRLDGHNRRRRKPQ--P---EHIGRPANFF--TGFQGSK-LLEFS-----GGSH 203

Query:   203 GWPVTSVSKQVSGNQTTVTA 222
              +P TSV     GN     A
Sbjct:   204 VFPTTSVLNPSWGNSLVSVA 223

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 70/140 (50%), Positives = 85/140 (60%)

Query:    83 QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQ 142
             Q P C V+GC  D S+ + Y+ RHKVC +HSK+PVVT+ G +QRFCQQCSRFH L EFD+
Sbjct:    97 QMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDE 156

Query:   143 GKRSCRRRLAGHNERRRKPTSGPFLGTRYGRLSSSVIENSSQGGGFLIDFSAYQMVGGRD 202
             GKRSCR+RL GHN RRRKP   P      GR ++       QG   L++FS     GG  
Sbjct:   157 GKRSCRKRLDGHNRRRRKPQ--P---EHIGRPANFF--TGFQGSK-LLEFS-----GGSH 203

Query:   203 GWPVTSVSKQVSGNQTTVTA 222
              +P TSV     GN     A
Sbjct:   204 VFPTTSVLNPSWGNSLVSVA 223

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 54/77 (70%), Positives = 62/77 (80%)

Query:    87 CQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRS 146
             CQVE C  D+S AK Y+ RHKVC  H+K+P V ++GL QRFCQQCSRFH L EFD+ KRS
Sbjct:    54 CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRS 113

Query:   147 CRRRLAGHNERRRKPTS 163
             CRRRLAGHNERRRK T+
Sbjct:   114 CRRRLAGHNERRRKSTT 130

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IMP

TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 55/76 (72%), Positives = 58/76 (76%)

Query:    85 PRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGK 144
             PRCQ EGC  DLS AK Y+ RHKVC  HSK+  V  AGL QRFCQQCSRFH L EFD GK
Sbjct:   186 PRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGK 245

Query:   145 RSCRRRLAGHNERRRK 160
             RSCR+RLA HN RRRK
Sbjct:   246 RSCRKRLADHNRRRRK 261

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048653 "anther development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q700W2	SPL9_ARATH	No assigned EC number	0.4247	0.8782	0.904	yes	no
A3C057	SPL17_ORYSJ	No assigned EC number	0.4392	0.8238	0.8091	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025360001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (366 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033078001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (159 aa)							•		0.483
	GSVIVG00026343001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (327 aa)							•		0.483
	GSVIVG00023070001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (154 aa)							•		0.483
	GSVIVG00011815001	SubName- Full=Chromosome undetermined scaffold_340, whole genome shotgun sequence; (439 aa)							•		0.483

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	386
pfam03110	79	pfam03110, SBP, SBP domain	1e-54

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  174 bits (442), Expect = 1e-54
 Identities = 62/77 (80%), Positives = 68/77 (88%)

Query: 86  RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKR 145
           RCQVEGC  DLS+AK Y+ RHKVC +HSK+PVV V+GLEQRFCQQCSRFH L EFD+GKR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 146 SCRRRLAGHNERRRKPT 162
           SCRRRLAGHNERRRKP 
Sbjct: 61  SCRRRLAGHNERRRKPQ 77

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	386
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=1.3e-39  Score=263.51  Aligned_cols=78  Identities=67%  Similarity=1.169  Sum_probs=63.3

Q ss_pred             ceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCccccccchHHHHHHhhhhhhcCCCCC
Q 046416           86 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTS  163 (386)
Q Consensus        86 ~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RRRk~~~  163 (386)
                      +||||||++||+.+|.||+||||||.|+|||+|+++|+++||||||+|||+|+|||+.|||||++|++||+||||+++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999875

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	386
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		6e-26
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		7e-20
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		2e-15

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 60/74 (81%)
Query: 87  CQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRS 146
           CQV+ C  D+ +AK Y+ RHKVC +H+K+  V ++GL QRFCQQCSRFH L EFD+ KRS
Sbjct: 11  CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70
Query: 147 CRRRLAGHNERRRK 160
           CRRRLAGHNERRRK
Sbjct: 71  CRRRLAGHNERRRK 84

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 86  RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKR 145
           RCQV  C+ D+S+ K Y+ RH+VC   + +  V + G  +R+CQQC +FH LP+FD+GKR
Sbjct: 5   RCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKR 64
Query: 146 SCRRRLAGHNERR-RKP 161
           SCRR+L  HN RR RKP
Sbjct: 65  SCRRKLERHNNRRKRKP 81

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 39/55 (70%)
Query: 87  CQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFD 141
           CQV+ C  DLS  K Y+ RHKVC +HSK+    V G+ QRFCQQCSRFH L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	386
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	99.97

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=7.4e-43  Score=288.95  Aligned_cols=85  Identities=59%  Similarity=1.026  Sum_probs=80.4

Q ss_pred             CCCCceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCccccccchHHHHHHhhhhhhcCCC
Q 046416           82 QQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP  161 (386)
Q Consensus        82 ~~~~~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RRRk~  161 (386)
                      .+.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||+
T Consensus         6 ~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRRk~   85 (94)
T 1ul4_A            6 SGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKS   85 (94)
T ss_dssp             --CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSC
T ss_pred             CCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhccC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 046416          162 TSGPF  166 (386)
Q Consensus       162 ~~~~~  166 (386)
                      +++++
T Consensus        86 ~~~~~   90 (94)
T 1ul4_A           86 SGESG   90 (94)
T ss_dssp             CCC--
T ss_pred             CCCcC
Confidence            99984

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=5.1e-42  Score=281.09  Aligned_cols=82  Identities=46%  Similarity=0.958  Sum_probs=79.6

Q ss_pred             CCceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCccccccchHHHHHHhhhhhhcCCCCC
Q 046416           84 PPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTS  163 (386)
Q Consensus        84 ~~~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RRRk~~~  163 (386)
                      .++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||++.
T Consensus         3 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~   82 (88)
T 1ul5_A            3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV   82 (88)
T ss_dssp             CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred             CCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             CC
Q 046416          164 GP  165 (386)
Q Consensus       164 ~~  165 (386)
                      ++
T Consensus        83 ~~   84 (88)
T 1ul5_A           83 DK   84 (88)
T ss_dssp             SS
T ss_pred             cC
Confidence            76

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.97  E-value=2.1e-32  Score=210.50  Aligned_cols=59  Identities=58%  Similarity=1.015  Sum_probs=57.2

Q ss_pred             CCCceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCcccc
Q 046416           83 QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFD  141 (386)
Q Consensus        83 ~~~~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd  141 (386)
                      +.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            36899999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	386
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	7e-46
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	2e-45
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	4e-31

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  150 bits (380), Expect = 7e-46
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 85  PRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGK 144
            RCQV  C+ D+S+ K Y+ RH+VC   + +  V + G  +R+CQQC +FH LP+FD+GK
Sbjct: 2   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 61

Query: 145 RSCRRRLAGHNERRRKPT 162
           RSCRR+L  HN RR++  
Sbjct: 62  RSCRRKLERHNNRRKRKP 79

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  149 bits (377), Expect = 2e-45
 Identities = 50/77 (64%), Positives = 61/77 (79%)

Query: 87  CQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRS 146
           CQV+ C  D+ +AK Y+ RHKVC +H+K+  V ++GL QRFCQQCSRFH L EFD+ KRS
Sbjct: 4   CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 63

Query: 147 CRRRLAGHNERRRKPTS 163
           CRRRLAGHNERRRK + 
Sbjct: 64  CRRRLAGHNERRRKSSG 80

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (277), Expect = 4e-31
 Identities = 34/56 (60%), Positives = 39/56 (69%)

Query: 86  RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFD 141
            CQV+ C  DLS  K Y+ RHKVC +HSK+    V G+ QRFCQQCSRFH L EFD
Sbjct: 3   CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	386
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.97

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.6e-42  Score=276.27  Aligned_cols=80  Identities=63%  Similarity=1.123  Sum_probs=78.4

Q ss_pred             CceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCccccccchHHHHHHhhhhhhcCCCCCC
Q 046416           85 PRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTSG  164 (386)
Q Consensus        85 ~~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RRRk~~~~  164 (386)
                      ..||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++++
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999875

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.3e-42  Score=280.01  Aligned_cols=82  Identities=46%  Similarity=0.958  Sum_probs=80.3

Q ss_pred             CCceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCccccccchHHHHHHhhhhhhcCCCCC
Q 046416           84 PPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTS  163 (386)
Q Consensus        84 ~~~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RRRk~~~  163 (386)
                      .++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++
T Consensus         1 ~~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~   80 (86)
T d1ul5a_           1 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV   80 (86)
T ss_dssp             CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred             CCeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCc
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 046416          164 GP  165 (386)
Q Consensus       164 ~~  165 (386)
                      ++
T Consensus        81 ~~   82 (86)
T d1ul5a_          81 DK   82 (86)
T ss_dssp             SS
T ss_pred             cc
Confidence            87

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.7e-32  Score=207.92  Aligned_cols=57  Identities=60%  Similarity=1.048  Sum_probs=55.8

Q ss_pred             CceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCcccc
Q 046416           85 PRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFD  141 (386)
Q Consensus        85 ~~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd  141 (386)
                      ..||||||++||+.+|+|||||||||.|+|||+|+|+|+++||||||+|||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            379999999999999999999999999999999999999999999999999999998