Citrus Sinensis ID: 046443
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1469 | 2.2.26 [Sep-21-2011] | |||||||
| Q42510 | 1451 | ARF guanine-nucleotide ex | yes | no | 0.973 | 0.985 | 0.841 | 0.0 | |
| Q9FLY5 | 1443 | ARF guanine-nucleotide ex | no | no | 0.955 | 0.972 | 0.632 | 0.0 | |
| F4K2K3 | 1375 | ARF guanine-nucleotide ex | no | no | 0.896 | 0.957 | 0.397 | 0.0 | |
| Q92538 | 1859 | Golgi-specific brefeldin | yes | no | 0.387 | 0.306 | 0.387 | 2e-95 | |
| Q9R1D7 | 1856 | Golgi-specific brefeldin | yes | no | 0.398 | 0.315 | 0.379 | 7e-95 | |
| Q9LPC5 | 1750 | Brefeldin A-inhibited gua | no | no | 0.638 | 0.536 | 0.259 | 3e-88 | |
| F4JSZ5 | 1687 | Brefeldin A-inhibited gua | no | no | 0.777 | 0.676 | 0.241 | 2e-82 | |
| Q9LZX8 | 1793 | Brefeldin A-inhibited gua | no | no | 0.614 | 0.503 | 0.248 | 8e-82 | |
| F4JN05 | 1706 | Brefeldin A-inhibited gua | no | no | 0.782 | 0.673 | 0.242 | 3e-81 | |
| Q9P7R8 | 1462 | Uncharacterized protein C | yes | no | 0.484 | 0.487 | 0.275 | 1e-78 |
| >sp|Q42510|GNOM_ARATH ARF guanine-nucleotide exchange factor GNOM OS=Arabidopsis thaliana GN=GN PE=1 SV=1 | Back alignment and function desciption |
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Score = 2524 bits (6541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1209/1437 (84%), Positives = 1320/1437 (91%), Gaps = 7/1437 (0%)
Query: 1 MGRLKLQSGIKAIEEEPEEYDAT-YSNKATLSCMINSEVGAVLAVMRRNRSVRWGGQYMS 59
MGRLKL SGIKAIEEEPE+++ T SN TL+CMI++E+ AVLAVMRRN VRWGG+YMS
Sbjct: 1 MGRLKLHSGIKAIEEEPEDFECTDSSNTTTLACMIDTEIAAVLAVMRRN--VRWGGRYMS 58
Query: 60 GDDQLEHSLIQSLKTLRKQIFSWQHPWHTINPAAYLQPFLDVIRSDETGAPITSIALSSV 119
GDDQLEHSLIQSLK LRKQ+FSW PWHTI+P YLQPFLDVIRSDETGAPITSIALSSV
Sbjct: 59 GDDQLEHSLIQSLKALRKQVFSWNQPWHTISPMLYLQPFLDVIRSDETGAPITSIALSSV 118
Query: 120 YKILSLDVIDQNSINVEEAMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLLACMKSKAS 179
YKIL+L+VIDQN+ N+E+AMHLVVD+VTSCRFEVTDPASEEVVLMKILQVLLACMK+KAS
Sbjct: 119 YKILNLNVIDQNTANIEDAMHLVVDSVTSCRFEVTDPASEEVVLMKILQVLLACMKNKAS 178
Query: 180 IVLSNQHVCTIVNTCFRIVHQAGNKGELSQRIARHTMHELVRCIFSHLPDVDNSEHALVN 239
++LSNQHVCT+VNTCFR+VHQAG KGEL QR+ARHTMHELVRCIFSHLPDV+ +E LVN
Sbjct: 179 VMLSNQHVCTVVNTCFRVVHQAGMKGELLQRVARHTMHELVRCIFSHLPDVERTETTLVN 238
Query: 240 GVTAVKQEIGGLDTDYAFGGKQLENGNGGSEYEGQQSFANLVSPSGVVATMMEENMNGSS 299
++KQE G+D+DYA K +E+GN SEY+ + S A + + ++M++ G
Sbjct: 239 RAGSIKQEKAGVDSDYAIVSKPVEDGNANSEYDVENSMATFATGA---QSLMDDGPVGPG 295
Query: 300 TGKDSVSYDLHLMTEPYGVPCMVEIFHFLCSLLNISEHMTMGPRSNTIALDEDVPLFALR 359
+ K + YDLH+MTEPYGVP MVEIFHFLCSLLN+ EH+ MG RSNTIA DEDVPLFAL
Sbjct: 296 SRKPASPYDLHIMTEPYGVPSMVEIFHFLCSLLNVVEHVGMGSRSNTIAFDEDVPLFALN 355
Query: 360 LINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTE 419
LINSAIELGG +IR HPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLY HLRTE
Sbjct: 356 LINSAIELGGSSIRHHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYQHLRTE 415
Query: 420 LKLQLEAFFSCVILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSN 479
LKLQLEAFFSCVILRLAQ ++G SYQQQEVAMEALV+FCRQK+FMVEMYANLDCDITCSN
Sbjct: 416 LKLQLEAFFSCVILRLAQGKYGPSYQQQEVAMEALVNFCRQKSFMVEMYANLDCDITCSN 475
Query: 480 VFEDLANLLSKSAFPVNCPLSAMHILALDGLIAVIQGMAERIGNASVSSEQSPVTLEEYT 539
VFE+L+NLLSKS FPVNCPLSAMHILALDGLIAVIQGMAERI N + PV L+EYT
Sbjct: 476 VFEELSNLLSKSTFPVNCPLSAMHILALDGLIAVIQGMAERISNGLTGLDLGPVHLDEYT 535
Query: 540 PFWMVKCDNYSDPNHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDP 599
PFWMVKCDNYSDPNHWV FVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDP
Sbjct: 536 PFWMVKCDNYSDPNHWVSFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDP 595
Query: 600 QSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRL 659
QSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVL+EFAGTFDFQ MNLDTALRLFLETFRL
Sbjct: 596 QSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLNEFAGTFDFQYMNLDTALRLFLETFRL 655
Query: 660 PGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDF 719
PGESQKIQRVLEAFSERYY QSP+ILANKDAAL+LSYS+IMLNTDQHNVQVKKKMTEEDF
Sbjct: 656 PGESQKIQRVLEAFSERYYMQSPEILANKDAALVLSYSIIMLNTDQHNVQVKKKMTEEDF 715
Query: 720 IRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQGVGFPEMTPSRWIDLMHKSKKTAP 779
IRNNRHINGGNDLPREFLSEL+HSIC NEIRTTPEQG GFPEMTPSRWIDLMHKSKKTAP
Sbjct: 716 IRNNRHINGGNDLPREFLSELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAP 775
Query: 780 FIVADSKAYLDHDMFAIMSGPTIAAISVVFEHAEHEEVYQTCIDGFLAVAKISACHHLED 839
+I+ADS+AYLDHDMFAIMSGPTIAAISVVF+HAEHE+VYQTCIDGFLA+AKISACHHLED
Sbjct: 776 YILADSRAYLDHDMFAIMSGPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLED 835
Query: 840 VLDDLVVSLCKFTTLLNPAAVEEPVLAFGDDTKARMATVSVFTIANRYGDFIRTGWRNIL 899
VLDDLVVSLCKFTTLLNP++V+EPVLAFGDD KARMAT+++FTIAN+YGD+IRTGWRNIL
Sbjct: 836 VLDDLVVSLCKFTTLLNPSSVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNIL 895
Query: 900 DCILRLHKLGLLPARVASDAADESELSADPSQGKPITNSLSSAHMPSIGTPRRSSGLMGR 959
DCILRLHKLGLLPARVASDAADESE S++ QGKP+ NSLSSAH+ S+GTPRRSSGLMGR
Sbjct: 896 DCILRLHKLGLLPARVASDAADESEHSSEQGQGKPLANSLSSAHLQSMGTPRRSSGLMGR 955
Query: 960 FSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIW 1019
FSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIW
Sbjct: 956 FSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIW 1015
Query: 1020 AAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIANIVQSTVMPCAL 1079
AAGRPQKG SSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIA I QSTVMPC L
Sbjct: 1016 AAGRPQKGTSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIATIAQSTVMPCNL 1075
Query: 1080 VEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANA 1139
V+KA+FGLLRICQRLLPYKE+LADELLRSLQLVLKLDARVADAYCEQI EVSRLVKANA
Sbjct: 1076 VDKAIFGLLRICQRLLPYKESLADELLRSLQLVLKLDARVADAYCEQIAIEVSRLVKANA 1135
Query: 1140 THIRSQMGWRTITSLLSITARHPEASEAGFEALLFIMSDGTHLLPANYVLCIDSARQFAE 1199
HIRSQ GWRTITSLLSITARHPEASE+GF+A+ F+MS+GTHL PANYVLC+D+ARQFAE
Sbjct: 1136 NHIRSQAGWRTITSLLSITARHPEASESGFDAVSFVMSEGTHLYPANYVLCVDAARQFAE 1195
Query: 1200 SRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKV 1259
SRVGQ+ERS+RAL+LM S++ LA+W AKE+MGE++ K+SQDIGEMWLRLVQ LRKV
Sbjct: 1196 SRVGQSERSIRALDLMGDSLEFLAKWALSAKENMGEEDFGKMSQDIGEMWLRLVQGLRKV 1255
Query: 1260 CLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDY 1319
CLDQREDVRNHAL SLQKCL GVDGI+L H +W QCFD VIFT+LDDLLEIA G SQKDY
Sbjct: 1256 CLDQREDVRNHALQSLQKCLGGVDGINLAHSMWSQCFDKVIFTVLDDLLEIAAG-SQKDY 1314
Query: 1320 RNMEGTLILAMKLLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQE 1379
RNMEGTL+LA+KLLSKVFLQ L ELSQL+TFCKLWLGVL+RMEKYMKVKVRGKKS+KLQE
Sbjct: 1315 RNMEGTLLLAIKLLSKVFLQQLQELSQLSTFCKLWLGVLTRMEKYMKVKVRGKKSDKLQE 1374
Query: 1380 IVPELLKNTLLIMKTRGVLVQRSALGGDSLWELTWLHVNNIVPSLQSEVFPDQDSDQ 1436
VPELLKN LL+MKT+GVL+QRSALGGDSLWELTWLHVNNI PS++ E+FPDQ+S Q
Sbjct: 1375 SVPELLKNILLVMKTKGVLLQRSALGGDSLWELTWLHVNNIAPSMRLELFPDQESSQ 1431
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May perform a function that affects cell expansion, the orientation of the plane of cell division, the number of cell divisions, and cell adhesion throughout plant development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLY5|GNL1_ARATH ARF guanine-nucleotide exchange factor GNL1 OS=Arabidopsis thaliana GN=GNL1 PE=3 SV=1 | Back alignment and function description |
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| >sp|F4K2K3|GNL2_ARATH ARF guanine-nucleotide exchange factor GNL2 OS=Arabidopsis thaliana GN=GNL2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q92538|GBF1_HUMAN Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 OS=Homo sapiens GN=GBF1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9R1D7|GBF1_CRIGR Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 OS=Cricetulus griseus GN=GBF1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LPC5|BIG3_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Arabidopsis thaliana GN=BIG3 PE=1 SV=1 | Back alignment and function description |
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| >sp|F4JSZ5|BIG1_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Arabidopsis thaliana GN=BIG1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LZX8|BIG2_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Arabidopsis thaliana GN=BIG2 PE=2 SV=1 | Back alignment and function description |
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| >sp|F4JN05|BIG4_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 4 OS=Arabidopsis thaliana GN=BIG4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9P7R8|YHV3_SCHPO Uncharacterized protein C211.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC211.03c PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1469 | ||||||
| 255562960 | 1470 | pattern formation protein, putative [Ric | 0.996 | 0.995 | 0.899 | 0.0 | |
| 225427145 | 1470 | PREDICTED: pattern formation protein EMB | 0.998 | 0.997 | 0.883 | 0.0 | |
| 356569278 | 1473 | PREDICTED: pattern formation protein EMB | 0.997 | 0.994 | 0.872 | 0.0 | |
| 147780347 | 1433 | hypothetical protein VITISV_034390 [Viti | 0.965 | 0.990 | 0.882 | 0.0 | |
| 449517315 | 1469 | PREDICTED: pattern formation protein EMB | 0.996 | 0.996 | 0.859 | 0.0 | |
| 297844304 | 1454 | hypothetical protein ARALYDRAFT_471559 [ | 0.985 | 0.995 | 0.835 | 0.0 | |
| 15220948 | 1451 | Pattern formation protein EMB30 [Arabido | 0.973 | 0.985 | 0.841 | 0.0 | |
| 1209631 | 1451 | GNOM [Arabidopsis thaliana] | 0.973 | 0.985 | 0.840 | 0.0 | |
| 356551668 | 1472 | PREDICTED: pattern formation protein EMB | 0.993 | 0.991 | 0.779 | 0.0 | |
| 356499124 | 1472 | PREDICTED: pattern formation protein EMB | 0.995 | 0.993 | 0.776 | 0.0 |
| >gi|255562960|ref|XP_002522485.1| pattern formation protein, putative [Ricinus communis] gi|223538370|gb|EEF39977.1| pattern formation protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 2765 bits (7168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1321/1469 (89%), Positives = 1392/1469 (94%), Gaps = 5/1469 (0%)
Query: 1 MGRLKLQSGIKAIEEEPEEYDATYSNKATLSCMINSEVGAVLAVMRRNRSVRWGGQYMSG 60
MGRLKLQ GIK+IEEEPEE D++YSNKATL+CMIN+EVGAVLAVMRRN VRWGG+YMSG
Sbjct: 1 MGRLKLQPGIKSIEEEPEECDSSYSNKATLACMINAEVGAVLAVMRRN--VRWGGRYMSG 58
Query: 61 DDQLEHSLIQSLKTLRKQIFSWQHPWHTINPAAYLQPFLDVIRSDETGAPITSIALSSVY 120
DDQLEHSL+QSLK+LRKQIFSWQHPWHTINPA YLQPFLDVIRSDETGAPIT +ALSSVY
Sbjct: 59 DDQLEHSLVQSLKSLRKQIFSWQHPWHTINPAVYLQPFLDVIRSDETGAPITGVALSSVY 118
Query: 121 KILSLDVIDQNSINVEEAMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLLACMKSKASI 180
KIL+LDVIDQN++NVE+AMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLL+CMKSKAS+
Sbjct: 119 KILTLDVIDQNTVNVEDAMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLLSCMKSKASV 178
Query: 181 VLSNQHVCTIVNTCFRIVHQAGNKGELSQRIARHTMHELVRCIFSHLPDVDNSEHALVNG 240
LSNQHVCTIVNTCFRIVHQAG+KGEL QRIARHTMHELVRCIFSHLPDVDN+EHALVNG
Sbjct: 179 TLSNQHVCTIVNTCFRIVHQAGSKGELLQRIARHTMHELVRCIFSHLPDVDNTEHALVNG 238
Query: 241 VTAVKQEIGGLDTDYAFGGKQLENGNGGSEYEGQ--QSFANLVSPSGVVATMMEENMNGS 298
V+ VKQEIGG+D DY F KQ ENGN SE +GQ +G+V T+ EEN G
Sbjct: 239 VSTVKQEIGGMDNDYTFVNKQSENGNSSSELDGQTSSVSFGSSVSTGLVPTVTEENTIGG 298
Query: 299 STGKDSVSYDLHLMTEPYGVPCMVEIFHFLCSLLNISEHMTMGPRSNTIALDEDVPLFAL 358
S GKD++ YDLHLMTEPYGVPCMVEIFHFLCSLLN+ EHM MGPRSNTIA DEDVPLFAL
Sbjct: 299 S-GKDALPYDLHLMTEPYGVPCMVEIFHFLCSLLNVVEHMGMGPRSNTIAFDEDVPLFAL 357
Query: 359 RLINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRT 418
LINSA+ELGGP+IR HPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHL T
Sbjct: 358 GLINSAVELGGPSIRHHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLST 417
Query: 419 ELKLQLEAFFSCVILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCS 478
ELKLQLEAFF+CVILRLAQSR+GASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCS
Sbjct: 418 ELKLQLEAFFACVILRLAQSRYGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCS 477
Query: 479 NVFEDLANLLSKSAFPVNCPLSAMHILALDGLIAVIQGMAERIGNASVSSEQSPVTLEEY 538
NVFEDLANLLSKSAFPVNCPLSAMHILALDGLIAVIQGMAERIGN SVSSEQ+PV LEEY
Sbjct: 478 NVFEDLANLLSKSAFPVNCPLSAMHILALDGLIAVIQGMAERIGNGSVSSEQAPVNLEEY 537
Query: 539 TPFWMVKCDNYSDPNHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLD 598
PFWMVKCDNY DP+HWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLD
Sbjct: 538 IPFWMVKCDNYGDPDHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLD 597
Query: 599 PQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFR 658
PQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQ MNLDTALRLFLETFR
Sbjct: 598 PQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQGMNLDTALRLFLETFR 657
Query: 659 LPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEED 718
LPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEED
Sbjct: 658 LPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEED 717
Query: 719 FIRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQGVGFPEMTPSRWIDLMHKSKKTA 778
FIRNNRHINGGNDLPREFLSELYHSIC+NEIRTTPEQG GFPEMTPSRWIDLM KSKKTA
Sbjct: 718 FIRNNRHINGGNDLPREFLSELYHSICRNEIRTTPEQGAGFPEMTPSRWIDLMLKSKKTA 777
Query: 779 PFIVADSKAYLDHDMFAIMSGPTIAAISVVFEHAEHEEVYQTCIDGFLAVAKISACHHLE 838
PFIV+DS+AYLDHDMFAIMSGPTIAAISVVF+HAEHE+VYQTCIDGFLAVAKISACHHLE
Sbjct: 778 PFIVSDSRAYLDHDMFAIMSGPTIAAISVVFDHAEHEDVYQTCIDGFLAVAKISACHHLE 837
Query: 839 DVLDDLVVSLCKFTTLLNPAAVEEPVLAFGDDTKARMATVSVFTIANRYGDFIRTGWRNI 898
DVLDDLVVSLCKFTTLLNP++VEEPVLAFGDDTKARMATV+VFTIANRYGD+IRTGWRNI
Sbjct: 838 DVLDDLVVSLCKFTTLLNPSSVEEPVLAFGDDTKARMATVTVFTIANRYGDYIRTGWRNI 897
Query: 899 LDCILRLHKLGLLPARVASDAADESELSADPSQGKPITNSLSSAHMPSIGTPRRSSGLMG 958
LDCILRLHKLGLLPARVASDAADESELS +P QGKPITNSLSS HM S+GTPRRSSGLMG
Sbjct: 898 LDCILRLHKLGLLPARVASDAADESELSTEPGQGKPITNSLSSVHMQSMGTPRRSSGLMG 957
Query: 959 RFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALI 1018
RFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCH+DSIFTESKFLQAESLLQLARALI
Sbjct: 958 RFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHVDSIFTESKFLQAESLLQLARALI 1017
Query: 1019 WAAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIANIVQSTVMPCA 1078
WAAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIANIVQSTVMPCA
Sbjct: 1018 WAAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIANIVQSTVMPCA 1077
Query: 1079 LVEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKAN 1138
LVEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKAN
Sbjct: 1078 LVEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKAN 1137
Query: 1139 ATHIRSQMGWRTITSLLSITARHPEASEAGFEALLFIMSDGTHLLPANYVLCIDSARQFA 1198
ATHIRS MGWRTITSLLSITARHPEASEAGF+ALL+IMSDG HL+PANYVLC+D+ARQFA
Sbjct: 1138 ATHIRSLMGWRTITSLLSITARHPEASEAGFDALLYIMSDGAHLMPANYVLCVDAARQFA 1197
Query: 1199 ESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRK 1258
ESRV QAERSVRAL+LM+GSVDCLARW EAKE+MGE+E AKL QDIGEMWLRLVQ LRK
Sbjct: 1198 ESRVAQAERSVRALDLMAGSVDCLARWSHEAKEAMGEEEAAKLLQDIGEMWLRLVQGLRK 1257
Query: 1259 VCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKD 1318
VCLDQRE+VRNHALLSLQKCLT VDGI+LPHGLWLQCFD+VIFTMLDDLLEIAQGHSQKD
Sbjct: 1258 VCLDQREEVRNHALLSLQKCLTVVDGINLPHGLWLQCFDLVIFTMLDDLLEIAQGHSQKD 1317
Query: 1319 YRNMEGTLILAMKLLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQ 1378
+RNM+GTLI+A+KLLS+VFLQLLH+L+QLTTFCKLWLGVLSRMEKY+KVKVRGKKSEKLQ
Sbjct: 1318 FRNMDGTLIIAVKLLSRVFLQLLHDLAQLTTFCKLWLGVLSRMEKYLKVKVRGKKSEKLQ 1377
Query: 1379 EIVPELLKNTLLIMKTRGVLVQRSALGGDSLWELTWLHVNNIVPSLQSEVFPDQDSDQPQ 1438
E+VPELLKNTLL MK +GVLVQRSALGGDSLWELTWLHVNNI PSLQSEVFPDQD +Q Q
Sbjct: 1378 EVVPELLKNTLLAMKAKGVLVQRSALGGDSLWELTWLHVNNIAPSLQSEVFPDQDWEQSQ 1437
Query: 1439 LKQSDNGGGLVSDEMGSIPSNETAASESA 1467
KQ + G L SD GS+PSN + ASE +
Sbjct: 1438 HKQGETIGSLASDGTGSVPSNGSVASEGS 1466
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225427145|ref|XP_002279665.1| PREDICTED: pattern formation protein EMB30-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356569278|ref|XP_003552830.1| PREDICTED: pattern formation protein EMB30-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|147780347|emb|CAN61434.1| hypothetical protein VITISV_034390 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449517315|ref|XP_004165691.1| PREDICTED: pattern formation protein EMB30-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297844304|ref|XP_002890033.1| hypothetical protein ARALYDRAFT_471559 [Arabidopsis lyrata subsp. lyrata] gi|297335875|gb|EFH66292.1| hypothetical protein ARALYDRAFT_471559 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|15220948|ref|NP_172851.1| Pattern formation protein EMB30 [Arabidopsis thaliana] gi|334182567|ref|NP_001184991.1| Pattern formation protein EMB30 [Arabidopsis thaliana] gi|2498329|sp|Q42510.1|GNOM_ARATH RecName: Full=ARF guanine-nucleotide exchange factor GNOM; AltName: Full=Pattern formation protein EMB30; AltName: Full=Protein EMBRYO DEFECTIVE 30; AltName: Full=Protein MIZU-KUSSEI2; AltName: Full=Protein VASCULAR NETWORK 7 gi|5080774|gb|AAD39284.1|AC007576_7 EMB30/GNOM gene product [Arabidopsis thaliana] gi|8778395|gb|AAF79403.1|AC068197_13 F16A14.20 [Arabidopsis thaliana] gi|1209633|gb|AAA91151.1| GNOM [Arabidopsis thaliana] gi|1335997|gb|AAB01205.1| similar to the Saccharomyces cerevisiae Sec7 protein, GenBank Accession Number J03918 [Arabidopsis thaliana] gi|1335999|gb|AAB01206.1| similar to the Saccharomyces cerevisiae Sec7 protein, GenBank Accession Number J03918 [Arabidopsis thaliana] gi|332190971|gb|AEE29092.1| Pattern formation protein EMB30 [Arabidopsis thaliana] gi|332190972|gb|AEE29093.1| Pattern formation protein EMB30 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|1209631|gb|AAA91150.1| GNOM [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356551668|ref|XP_003544196.1| PREDICTED: pattern formation protein EMB30-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356499124|ref|XP_003518393.1| PREDICTED: pattern formation protein EMB30-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1469 | ||||||
| TAIR|locus:2035853 | 1451 | GN "AT1G13980" [Arabidopsis th | 0.973 | 0.985 | 0.827 | 0.0 | |
| UNIPROTKB|Q75H95 | 1175 | OSJNBa0056E06.17 "Pattern form | 0.777 | 0.971 | 0.762 | 0.0 | |
| TAIR|locus:2175728 | 1443 | GNL1 "AT5G39500" [Arabidopsis | 0.948 | 0.966 | 0.630 | 0.0 | |
| UNIPROTKB|Q0E1L7 | 996 | Os02g0326600 "Os02g0326600 pro | 0.663 | 0.978 | 0.670 | 0.0 | |
| TAIR|locus:2183159 | 1375 | GNL2 "AT5G19610" [Arabidopsis | 0.782 | 0.835 | 0.414 | 2.6e-290 | |
| UNIPROTKB|F1NGJ3 | 1804 | GBF1 "Uncharacterized protein" | 0.385 | 0.313 | 0.373 | 9.4e-171 | |
| UNIPROTKB|Q92538 | 1859 | GBF1 "Golgi-specific brefeldin | 0.357 | 0.282 | 0.380 | 1.8e-166 | |
| UNIPROTKB|F1PB51 | 1857 | GBF1 "Uncharacterized protein" | 0.356 | 0.282 | 0.381 | 1.1e-165 | |
| UNIPROTKB|E1BMC4 | 1861 | GBF1 "Uncharacterized protein" | 0.356 | 0.281 | 0.381 | 3.5e-165 | |
| UNIPROTKB|F1S8S9 | 1865 | GBF1 "Uncharacterized protein" | 0.356 | 0.280 | 0.383 | 3.7e-164 |
| TAIR|locus:2035853 GN "AT1G13980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6210 (2191.1 bits), Expect = 0., P = 0.
Identities = 1189/1437 (82%), Positives = 1298/1437 (90%)
Query: 1 MGRLKLQSGIKAIEEEPEEYDAT-YSNKATLSCMINSEVGAVLAVMRRNRSVRWGGQYMS 59
MGRLKL SGIKAIEEEPE+++ T SN TL+CMI++E+ AVLAVMRRN VRWGG+YMS
Sbjct: 1 MGRLKLHSGIKAIEEEPEDFECTDSSNTTTLACMIDTEIAAVLAVMRRN--VRWGGRYMS 58
Query: 60 GDDQLEHSLIQSLKTLRKQIFSWQHPWHTINPAAYLQPFLDVIRSDETGAPITSIALSSV 119
GDDQLEHSLIQSLK LRKQ+FSW PWHTI+P YLQPFLDVIRSDETGAPITSIALSSV
Sbjct: 59 GDDQLEHSLIQSLKALRKQVFSWNQPWHTISPMLYLQPFLDVIRSDETGAPITSIALSSV 118
Query: 120 YKILSLDVIDQNSINVEEAMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLLACMKSKAS 179
YKIL+L+VIDQN+ N+E+AMHLVVD+VTSCRFEVTDPASEEVVLMKILQVLLACMK+KAS
Sbjct: 119 YKILNLNVIDQNTANIEDAMHLVVDSVTSCRFEVTDPASEEVVLMKILQVLLACMKNKAS 178
Query: 180 IVLSNQHVCTIVNTCFRIVHQAGNKGELSQRIARHTMHELVRCIFSHLPDVDNSEHALVN 239
++LSNQHVCT+VNTCFR+VHQAG KGEL QR+ARHTMHELVRCIFSHLPDV+ +E LVN
Sbjct: 179 VMLSNQHVCTVVNTCFRVVHQAGMKGELLQRVARHTMHELVRCIFSHLPDVERTETTLVN 238
Query: 240 GVTAVKQEIGGLDTDYAFGGKQLENGNGGSEYEGQQSFANLVSPSGVVATMMEENMNGSS 299
++KQE G+D+DYA K +E+GN SEY+ + S A + + ++M++ G
Sbjct: 239 RAGSIKQEKAGVDSDYAIVSKPVEDGNANSEYDVENSMATFATGA---QSLMDDGPVGPG 295
Query: 300 TGKDSVSYDLHLMTEPYGVPCMVEIFHFLCSLLNISEHMTMGPRSNTIALDEDVPLFALR 359
+ K + YDLH+MTEPYGVP MVEIFHFLCSLLN+ EH+ MG RSNTIA DEDVPLFAL
Sbjct: 296 SRKPASPYDLHIMTEPYGVPSMVEIFHFLCSLLNVVEHVGMGSRSNTIAFDEDVPLFALN 355
Query: 360 LINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTE 419
LINSAIELGG +IR HPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLY HLRTE
Sbjct: 356 LINSAIELGGSSIRHHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYQHLRTE 415
Query: 420 LKLQLEAFFSCVILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSN 479
LKLQLEAFFSCVILRLAQ ++G SYQQQEVAMEALV+FCRQK+FMVEMYANLDCDITCSN
Sbjct: 416 LKLQLEAFFSCVILRLAQGKYGPSYQQQEVAMEALVNFCRQKSFMVEMYANLDCDITCSN 475
Query: 480 VFEDLANLLSKSAFPVNCPLSAMHILALDGLIAVIQGMAERIGNASVSSEQSPVTLEEYT 539
VFE+L+NLLSKS FPVNCPLSAMHILALDGLIAVIQGMAERI N + PV L+EYT
Sbjct: 476 VFEELSNLLSKSTFPVNCPLSAMHILALDGLIAVIQGMAERISNGLTGLDLGPVHLDEYT 535
Query: 540 PFWMVKCDNYSDPNHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDP 599
PFWMVKCDNYSDPNHWV FVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDP
Sbjct: 536 PFWMVKCDNYSDPNHWVSFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDP 595
Query: 600 QSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRL 659
QSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVL+EFAGTFDFQ MNLDTALRLFLETFRL
Sbjct: 596 QSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLNEFAGTFDFQYMNLDTALRLFLETFRL 655
Query: 660 PGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDF 719
PGESQKIQRVLEAFSERYY QSP+ILANKDAAL+LSYS+IMLNTDQHNVQVKKKMTEEDF
Sbjct: 656 PGESQKIQRVLEAFSERYYMQSPEILANKDAALVLSYSIIMLNTDQHNVQVKKKMTEEDF 715
Query: 720 IRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQGVGFPEMTPSRWIDLMHKSKKTAP 779
IRNNRHINGGNDLPREFLSEL+HSIC NEIRTTPEQG GFPEMTPSRWIDLMHKSKKTAP
Sbjct: 716 IRNNRHINGGNDLPREFLSELFHSICNNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAP 775
Query: 780 FIVADSKAYLDHDMFAIMSGPTIAAISVVFEHAEHEEVYQTCIDGFLAVAKISACHHXXX 839
+I+ADS+AYLDHDMFAIMSGPTIAAISVVF+HAEHE+VYQTCIDGFLA+AKISACHH
Sbjct: 776 YILADSRAYLDHDMFAIMSGPTIAAISVVFDHAEHEDVYQTCIDGFLAIAKISACHHLED 835
Query: 840 XXXXXXXSLCKFTTLLNPAAVEEPVLAFGDDTKARMATVSVFTIANRYGDFIRTGWRNIL 899
SLCKFTTLLNP++V+EPVLAFGDD KARMAT+++FTIAN+YGD+IRTGWRNIL
Sbjct: 836 VLDDLVVSLCKFTTLLNPSSVDEPVLAFGDDAKARMATITIFTIANKYGDYIRTGWRNIL 895
Query: 900 DCILRLHKLGLLPARVXXXXXXXXXXXXXXXQGKPITNSLSSAHMPSIGTPRRSSGLMGR 959
DCILRLHKLGLLPARV QGKP+ NSLSSAH+ S+GTPRRSSGLMGR
Sbjct: 896 DCILRLHKLGLLPARVASDAADESEHSSEQGQGKPLANSLSSAHLQSMGTPRRSSGLMGR 955
Query: 960 FSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIW 1019
FSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIW
Sbjct: 956 FSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIW 1015
Query: 1020 AAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIANIVQSTVMPCAL 1079
AAGRPQKG SSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIA I QSTVMPC L
Sbjct: 1016 AAGRPQKGTSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIATIAQSTVMPCNL 1075
Query: 1080 VEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANA 1139
V+KA+FGLLRICQRLLPYKE+LADELLRSLQLVLKLDARVADAYCEQI EVSRLVKANA
Sbjct: 1076 VDKAIFGLLRICQRLLPYKESLADELLRSLQLVLKLDARVADAYCEQIAIEVSRLVKANA 1135
Query: 1140 THIRSQMGWRTITSLLSITARHPEASEAGFEALLFIMSDGTHLLPANYVLCIDSARQFAE 1199
HIRSQ GWRTITSLLSITARHPEASE+GF+A+ F+MS+GTHL PANYVLC+D+ARQFAE
Sbjct: 1136 NHIRSQAGWRTITSLLSITARHPEASESGFDAVSFVMSEGTHLYPANYVLCVDAARQFAE 1195
Query: 1200 SRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKV 1259
SRVGQ+ERS+RAL+LM S++ LA+W AKE+MGE++ K+SQDIGEMWLRLVQ LRKV
Sbjct: 1196 SRVGQSERSIRALDLMGDSLEFLAKWALSAKENMGEEDFGKMSQDIGEMWLRLVQGLRKV 1255
Query: 1260 CLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDY 1319
CLDQREDVRNHAL SLQKCL GVDGI+L H +W QCFD VIFT+LDDLLEIA G SQKDY
Sbjct: 1256 CLDQREDVRNHALQSLQKCLGGVDGINLAHSMWSQCFDKVIFTVLDDLLEIAAG-SQKDY 1314
Query: 1320 RNMEGTLILAMKLLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQE 1379
RNMEGTL+LA+KLLSKVFLQ L ELSQL+TFCKLWLGVL+RMEKYMKVKVRGKKS+KLQE
Sbjct: 1315 RNMEGTLLLAIKLLSKVFLQQLQELSQLSTFCKLWLGVLTRMEKYMKVKVRGKKSDKLQE 1374
Query: 1380 IVPELLKNTLLIMKTRGVLVQRSALGGDSLWELTWLHVNNIVPSLQSEVFPDQDSDQ 1436
VPELLKN LL+MKT+GVL+QRSALGGDSLWELTWLHVNNI PS++ E+FPDQ+S Q
Sbjct: 1375 SVPELLKNILLVMKTKGVLLQRSALGGDSLWELTWLHVNNIAPSMRLELFPDQESSQ 1431
|
|
| UNIPROTKB|Q75H95 OSJNBa0056E06.17 "Pattern formation protein EMB30, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2175728 GNL1 "AT5G39500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q0E1L7 Os02g0326600 "Os02g0326600 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2183159 GNL2 "AT5G19610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NGJ3 GBF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q92538 GBF1 "Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PB51 GBF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BMC4 GBF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S8S9 GBF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42510 | GNOM_ARATH | No assigned EC number | 0.8413 | 0.9734 | 0.9855 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | gw1.XVII.958.1 | annotation not avaliable (1397 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1469 | |||
| PLN03076 | 1780 | PLN03076, PLN03076, ARF guanine nucleotide exchang | 1e-91 | |
| cd00171 | 185 | cd00171, Sec7, Sec7 domain; Domain named after the | 8e-84 | |
| smart00222 | 189 | smart00222, Sec7, Sec7 domain | 5e-80 | |
| pfam01369 | 188 | pfam01369, Sec7, Sec7 domain | 2e-78 | |
| COG5307 | 1024 | COG5307, COG5307, SEC7 domain proteins [General fu | 6e-52 | |
| pfam12783 | 166 | pfam12783, Sec7_N, Guanine nucleotide exchange fac | 3e-43 |
| >gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = 1e-91
Identities = 282/1061 (26%), Positives = 482/1061 (45%), Gaps = 148/1061 (13%)
Query: 355 LFALRLINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYH 414
+ AL L+ +E G R R L I+ L +L++ S +I + CSI ++L
Sbjct: 378 ILALELLKILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVS 437
Query: 415 HLRTELKLQLEAFFSCVILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCD 474
R LK ++ FF ++LR+ ++ ++QQ+ + + L C +V+++ N DCD
Sbjct: 438 RFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCD 497
Query: 475 ITCSNVFEDLANLLSKSA--FPVNCPLS-------AMHILALDGLIAVIQGMAE------ 519
+ SN+FE + N L K+A P + AM + A+ L+A+++ M +
Sbjct: 498 VNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQL 557
Query: 520 RIGNAS--VSSEQSPVTLEEYTPFWMV--------KCDNYSDPNHWVP----FVRRRKYI 565
R+ + + + LE + D++S+ + +RR Y
Sbjct: 558 RLPDPASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAY- 616
Query: 566 KRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHD 625
K L G FNR PKKG+EFL + + + P+ +A F + +GL+K L+GD+LG +
Sbjct: 617 KLELQEGISLFNRKPKKGIEFLINANKVGES--PEEIAAFLKDASGLNKTLIGDYLGERE 674
Query: 626 EFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQIL 685
+ ++V+H + +FDFQ M D A+R FL+ FRLPGE+QKI R++E F+ERY + +P+
Sbjct: 675 DLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAF 734
Query: 686 ANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSIC 745
++ D A +L+YS+IMLNTD HN VK KM+ +DFIRNNR I+ G DLP EF+ LY I
Sbjct: 735 SSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERIS 794
Query: 746 KNEIRTTPEQGVGFPEMTPS-------------------RWID----------------L 770
KNEI+ + V P+ S R D
Sbjct: 795 KNEIKMKEDDLV--PQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQF 852
Query: 771 MHKSKKTAPFIVADSKAYLDHDMFAIMSGPTIAAISVVFEHAEHEEVYQTCIDGFLAVAK 830
K++K+ A + + M + P +AA SV + ++ E V C++GF
Sbjct: 853 KEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIH 912
Query: 831 ISACHHLEDVLDDLVVSLCKFTTLLNPAAVEEPVLAFGDDTKARMATVSVFTIANRYGDF 890
++A ++ D V SL KFT+L +PA +++ + D KA + +IA+ G++
Sbjct: 913 VTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNI---DAIKA------IVSIADEDGNY 963
Query: 891 IRTGWRNILDCILRLHKLGLLPARVASD----AADESELSADPSQGKPI--------TNS 938
++ W +IL C+ R L LL D AA ++E PI
Sbjct: 964 LQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGK 1023
Query: 939 LSSAHMPSIGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQ--QLAAHQRTLQTIQKCHID 996
L A S+G+ G+ S +++ +EQ L ++ L+ + ++
Sbjct: 1024 LQYAAAAVRRGSYDSAGVGGKASGVVT----------SEQMNNLVSNLNMLEQVGSFEMN 1073
Query: 997 SIFTESKFLQAESLLQLARALIWAAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIV 1056
IFT S+ L +E+++ +AL + + S P VF L ++ I N +RI
Sbjct: 1074 RIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPR-----VFSLTKIVEIAHYNMNRIR 1128
Query: 1057 LLWQGVYEHIAN----IVQSTVMPCALVEKAVFGLLRICQRLLPYKE----NLADELLRS 1108
L+W ++ +++ I S + A+ A+ L ++ + L +E N +E ++
Sbjct: 1129 LVWSSIWHVLSDFFVTIGCSENLSIAIF--AMDSLRQLSMKFLEREELANYNFQNEFMKP 1186
Query: 1109 LQLVLKLDARVADAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITA--RHPEASE 1166
+V++ V E I + VS++V + +++S GW+++ + + A H
Sbjct: 1187 FVIVMRKSNAVEIR--ELIIRCVSQMVLSRVNNVKS--GWKSMFMVFTTAAYDDHKNIVL 1242
Query: 1167 AGFEALLFIMSDG----THLLPANYVLCIDSARQFAESRVGQ-----AERSVR--ALELM 1215
FE + I+ + T + C++ F SR + A +R A +L
Sbjct: 1243 LAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302
Query: 1216 SGSVDCLARWGREAKESMGEDEVAKLS--QDIGEM---------WLRLVQALRKVCLDQR 1264
G + +R + KE+ + Q+ GE W L+ L ++ D R
Sbjct: 1303 EGDLGSSSR--NKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPR 1360
Query: 1265 EDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLD 1305
++R AL L L G LW + F+ V+F + D
Sbjct: 1361 PEIRKSALQVLFDTLRN-HGHLFSLPLWERVFESVLFPIFD 1400
|
Length = 1780 |
| >gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S | Back alignment and domain information |
|---|
| >gnl|CDD|214569 smart00222, Sec7, Sec7 domain | Back alignment and domain information |
|---|
| >gnl|CDD|216460 pfam01369, Sec7, Sec7 domain | Back alignment and domain information |
|---|
| >gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|221768 pfam12783, Sec7_N, Guanine nucleotide exchange factor in Golgi transport N-terminal | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1469 | |||
| KOG0928 | 1386 | consensus Pattern-formation protein/guanine nucleo | 100.0 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 100.0 | |
| KOG0929 | 1514 | consensus Guanine nucleotide exchange factor [Intr | 100.0 | |
| COG5307 | 1024 | SEC7 domain proteins [General function prediction | 100.0 | |
| KOG1848 | 1610 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| cd00171 | 185 | Sec7 Sec7 domain; Domain named after the S. cerevi | 100.0 | |
| PF01369 | 190 | Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 do | 100.0 | |
| smart00222 | 187 | Sec7 Sec7 domain. Domain named after the S. cerevi | 100.0 | |
| KOG0930 | 395 | consensus Guanine nucleotide exchange factor Cytoh | 100.0 | |
| KOG0931 | 627 | consensus Predicted guanine nucleotide exchange fa | 100.0 | |
| PF12783 | 168 | Sec7_N: Guanine nucleotide exchange factor in Golg | 99.96 | |
| KOG0932 | 774 | consensus Guanine nucleotide exchange factor EFA6 | 99.95 | |
| KOG1846 | 1777 | consensus Uncharacterized conserved protein, conta | 99.09 | |
| PF09324 | 86 | DUF1981: Domain of unknown function (DUF1981); Int | 98.76 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 90.59 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 87.28 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 83.53 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 81.34 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 80.88 |
| >KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-245 Score=2243.04 Aligned_cols=1364 Identities=53% Similarity=0.833 Sum_probs=1218.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccchHHHHHHHHHHHhhccCCCCCCCChhhhhHHHHHHhcc
Q 046443 25 SNKATLSCMINSEVGAVLAVMRRNRSVRWGGQYMSGDDQLEHSLIQSLKTLRKQIFSWQHPWHTINPAAYLQPFLDVIRS 104 (1469)
Q Consensus 25 ~~~~~~~~~v~~e~~~v~~~mr~~~~~rw~~~~~~~~~~~~~pl~~~f~~Lr~~l~~~~~~~~~~d~~~~l~PFl~vi~S 104 (1469)
++.....|+++.++.+|+++|||| .||+.|+..+.+..+|||+++|++||.+|+++.+ |+++||.+||+|||+||+|
T Consensus 4 ~~~~~~~~~in~~vg~~l~~~~~~--~~~~~~~~~~~~~~~~~ll~~f~~Lr~~ln~~~~-l~~idp~~~L~PFL~vI~s 80 (1386)
T KOG0928|consen 4 TSRYISQGMINILVGAVLAVFRRN--DRWSVRSFTNLDTSSHSLLSSFKQLREVLNSLAS-LDTIDPLTYLSPFLEVIKS 80 (1386)
T ss_pred ccchhhhhhhHHHHhHHHHHHHhc--cchhhccCCCCcccchHHHHHHHHHHHHhhchhh-hccCChHhHHhHHHHHHhc
Confidence 456677899999999999999999 9999999988888899999999999999999884 9999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHHccCCccccch
Q 046443 105 DETGAPITSIALSSVYKILSLDVIDQNSINVEEAMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLLACMKSKASIVLSN 184 (1469)
Q Consensus 105 ~~t~~~iT~~AL~sl~kfl~~~~i~~~s~~~~~a~~~i~~avt~crfe~td~~~De~VllkILqvL~~~~~~~~g~~L~~ 184 (1469)
++|+||||++||+||+||++|++||++++|++.||+.+++||||||||+||+++||+|||||||||++||++|+|.+|+|
T Consensus 81 ~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v~AvthcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSn 160 (1386)
T KOG0928|consen 81 DETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIVDAVTHCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSN 160 (1386)
T ss_pred ccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHHHHHHheeeeccCccchhHHHHHHHHHHHHHHhCchhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHhccCCCCCCcc-h-hhcccccccccccCCCCCCcccCCccc
Q 046443 185 QHVCTIVNTCFRIVHQAGNKGELSQRIARHTMHELVRCIFSHLPDVDNSE-H-ALVNGVTAVKQEIGGLDTDYAFGGKQL 262 (1469)
Q Consensus 185 ~~v~~~l~~c~~l~~~~~~~se~lr~tAe~tl~~~v~~iF~rl~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (1469)
+.||++||||||+|||. ++|||||++||+||++|++.||+|||++++.- . .+.+++.+ ++.+..+...+....
T Consensus 161 q~Ic~ivqTcl~v~~q~-~lselLr~~Ae~Tm~~~~~~IFsrLk~~~~~~~~~~~~~~es~----~~~~~~~~~i~~k~~ 235 (1386)
T KOG0928|consen 161 QIICDIVQTCLRVVCQS-RLSELLRKSAEHTMHDLTQLIFSRLKYIEPPYVNEMYINDESY----QGNVLKDDFIGTKRV 235 (1386)
T ss_pred hHHHHHHHHHHHHHHHH-hHHHHhhcchhhhHHHHHHHHHHhCccccccccchhhcchHhh----hcccccccccCcccC
Confidence 99999999999999997 89999999999999999999999999998521 1 12222222 222334445555555
Q ss_pred cCCCCCCCccccccccccCC-CCcccccccccccCCCCC-CC---CCcccccccCCCCCChhHHHHHHHHHHhccCCCCC
Q 046443 263 ENGNGGSEYEGQQSFANLVS-PSGVVATMMEENMNGSST-GK---DSVSYDLHLMTEPYGVPCMVEIFHFLCSLLNISEH 337 (1469)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~pyg~~~~~~lf~~L~sLi~~~~~ 337 (1469)
++|.+.++.+......+..+ ..+.++ +... +. +..+........+||+||+.++|++||+|+++.
T Consensus 236 en~e~~~~~~~a~~~~~~~~~~~~~~v--------~~~~~~~~~~~e~a~~~~~~~~~ygip~~~~~~h~l~sl~~~~-- 305 (1386)
T KOG0928|consen 236 ENGEISSEDESATFDDGSISEKFEVPV--------QQVDREQETDEENAEAMAAMDENYGIPVMKDIFHFLLSLLNVT-- 305 (1386)
T ss_pred CCCCccCcccccccccccccccccCCc--------cccccccCChhhhhhHhhcccccCCCceeccchhhhhhhcccc--
Confidence 65544332211100000000 000000 0000 00 001122345678999999999999999999972
Q ss_pred CCCCCCCCccccccchhHHHHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHhh-----cccchHHHHHHHHHHHHH
Q 046443 338 MTMGPRSNTIALDEDVPLFALRLINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFG-----LSMSPLILSMVCSIVLNL 412 (1469)
Q Consensus 338 ~~~~~~~n~~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~-----~s~~~~i~~~~lri~~~L 412 (1469)
|.+.++++.++++|.|||+|+|.+|+.|..||.|+.+|+|+++++++..+ .+..+.++++.+.++.+|
T Consensus 306 -------n~~~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~~~~~k~s~~~~~Lql~~s~vl~l 378 (1386)
T KOG0928|consen 306 -------NTVAHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFLQIPTKMSLERLVLQLFCSLVLNL 378 (1386)
T ss_pred -------ccccchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999998 677788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHhcCCCCCCCcHHHHHHHHHHhcc
Q 046443 413 YHHLRTELKLQLEAFFSCVILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEDLANLLSKSA 492 (1469)
Q Consensus 413 ~~~~r~~Lk~q~E~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~ly~NYDCd~~~~nlfe~l~~~L~k~a 492 (1469)
+..+|.++|.|+|.||+.+..++...+.++++++|++|+|+++.|||+|.|++++|+|||||++|+||||++++.|+|++
T Consensus 379 ~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yvNfDCd~~csnlfedl~k~Ltkna 458 (1386)
T KOG0928|consen 379 YLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKNA 458 (1386)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHcc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhHH--HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccCcccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 046443 493 FPVNCPLSAMHI--LALDGLIAVIQGMAERIGNASVSSEQSPVTLEEYTPFWMVKCDNYSDPNHWVPFVRRRKYIKRRLM 570 (1469)
Q Consensus 493 ~~~~~~~~~~~~--laLe~ll~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~K~~~~ 570 (1469)
||+++++++++. +||++++++++.+.++..... -.+||..+++ .|+.+++++| +|++++
T Consensus 459 fP~sg~~tt~~i~~l~l~~v~~l~e~~~~~l~~~d------------~~ef~~~k~e------~~v~~iR~rk-~K~~li 519 (1386)
T KOG0928|consen 459 FPVSGPLTTASILPLDLEGVLGLAENMIDELQDSD------------REEFWTDKCE------VWVLFIRSRK-RKRELI 519 (1386)
T ss_pred CCcccccccccccchHHHHHHHHHHHHHhhccccC------------cCccccCCcc------hhhhhhccch-hhHHHH
Confidence 999999987765 666666666666555433211 1467777765 5666666665 799999
Q ss_pred HHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcCCCCCCCHHHHH
Q 046443 571 IGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTAL 650 (1469)
Q Consensus 571 ~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fdf~~~~~~~al 650 (1469)
.|+++||+||||||+||+++|+|+++.||..+|.|||+||+||||+||+|||++++ .+||++|+++|||+||++|+||
T Consensus 520 ~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~--~~vLn~Fi~tFdF~gmrlDeAL 597 (1386)
T KOG0928|consen 520 LGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKN--VSVLNEFIGTFDFQGMRLDEAL 597 (1386)
T ss_pred HHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcch--HHHHHHHHHhcCcCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHHhhhccccccccCCCCHHHHHHhhccCCCC
Q 046443 651 RLFLETFRLPGESQKIQRVLEAFSERYYEQSP-QILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGG 729 (1469)
Q Consensus 651 R~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~-~~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F~~n~~~~n~g 729 (1469)
|.||++||||||+|+|+||+|+||++||++|+ ++|+++|+||+|||||||||||+||||||++||++||+||+||+|+|
T Consensus 598 Rl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g 677 (1386)
T KOG0928|consen 598 RLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGG 677 (1386)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcccccCC
Confidence 99999999999999999999999999999887 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCccccCCCCCCCCCCCChhHHHHHHHhhccCCCccccCcchhccHHHHHhchhhHHHHHHHHH
Q 046443 730 NDLPREFLSELYHSICKNEIRTTPEQGVGFPEMTPSRWIDLMHKSKKTAPFIVADSKAYLDHDMFAIMSGPTIAAISVVF 809 (1469)
Q Consensus 730 ~d~~~~~L~~iy~~I~~~~i~~~~~~~~~~~~~~~~~w~~ll~~s~~~~~~~~~~~~~~~~~~mf~~~w~pilaals~~f 809 (1469)
+|||+|||.+||++|+++||+||++| +|..+++.++|+.+++|++.+.||+.++...++|++||..+|||+++|++++|
T Consensus 678 ~DFpreyLseiY~SIk~~EIvmPee~-hG~~~~~~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~vF 756 (1386)
T KOG0928|consen 678 KDFPREYLSEIYQSIKTNEIVMPEEH-HGTEEMFEYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYVF 756 (1386)
T ss_pred CCCCHHHHHHHHHHHhhcceeccccc-CCchhhhHHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHHHHHHh
Confidence 99999999999999999999999998 99989989999999999999999999998889999999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCCCCC-ccccccccCccHHHHHHHHHHHHHHhhcC
Q 046443 810 EHAEHEEVYQTCIDGFLAVAKISACHHLEDVLDDLVVSLCKFTTLLNPAA-VEEPVLAFGDDTKARMATVSVFTIANRYG 888 (1469)
Q Consensus 810 ~~a~D~~i~~~~L~gf~~~a~ia~~~~l~~~~D~lv~sL~k~t~L~~~~~-~~~~~v~fG~~~K~~la~~~Lf~ia~~~G 888 (1469)
+.+++++++++|++|+++||.|+++||+.+++|.++.+|||||+|.+|.. +++.+.+||+|.|+++|+.++|.+++++|
T Consensus 757 d~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~~G 836 (1386)
T KOG0928|consen 757 DVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANKFG 836 (1386)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999998875 67788899999999999999999999999
Q ss_pred CchhccHHHHHHHHHHHHHhcCCCccccccccccccccCCCCCCCcccCCCCCC-CCCCCCCCCCCCCcccccccccccC
Q 046443 889 DFIRTGWRNILDCILRLHKLGLLPARVASDAADESELSADPSQGKPITNSLSSA-HMPSIGTPRRSSGLMGRFSQLLSLD 967 (1469)
Q Consensus 889 ~~L~~sW~~Il~~i~~L~~~~Llp~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~-~~~~~~~~~~~~gllS~fssyls~~ 967 (1469)
++++.+|++|++|+++|+++.|+|..+.+++....+. +..+++|.+ +....++++.++|++|+|+||++++
T Consensus 837 d~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~--------~~~~~~~~~~~~~~~~k~~~ss~Lls~fs~~Ls~d 908 (1386)
T KOG0928|consen 837 DLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPEL--------LKLNKLPVPQQEISINKPRKSSGLLSRFSSYLSGD 908 (1386)
T ss_pred cHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccc--------cccCCCCCCccccCcccccccchHHHHHHHhcCCc
Confidence 9999999999999999999999999988765433221 122334433 2333456679999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhhhhchhHHHhhcccCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCcchhHHHHHHHHH
Q 046443 968 TEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIWAAGRPQKGNSSPEDEDTAVFCLELLIAI 1047 (1469)
Q Consensus 968 s~e~~~eps~eei~~~~~a~~cI~s~~i~~LF~~s~~L~~esL~~lv~aL~~~s~~~~~~~~~~~~e~~~~F~Le~lv~v 1047 (1469)
+.+.+|.||+||+.+.++|++||++|+++++|+++++|+.+++..++++|+..+... +.++|+..+||+|+++.|
T Consensus 909 ~e~~~~~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~-----s~~de~s~~F~lElli~I 983 (1386)
T KOG0928|consen 909 EEEERPCPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDL-----SMEDEESAVFCLELLIAI 983 (1386)
T ss_pred ccccCCCCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCc-----cCcccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998642 567889999999999999
Q ss_pred HhhcchhhHHhHHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcChHHHHHHHHH
Q 046443 1048 TLNNRDRIVLLWQGVYEHIANIVQSTVM-PCALVEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQ 1126 (1469)
Q Consensus 1048 ~l~N~~Ri~~~W~~v~~hL~~i~~~~~~-~~~l~erAv~~L~rl~~rll~~~e~l~~~lL~~L~~l~~l~~~v~~~v~~~ 1126 (1469)
.+.|+||+..+|+.+++|+..+++.+.. +|.++++|+.|++|+|+|++.|++.+.++++++++.++++++.+.+.+.++
T Consensus 984 ~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~rv~~rll~yk~~l~d~l~~sl~~ll~L~~ki~d~~~~k 1063 (1386)
T KOG0928|consen 984 TLSNRDRILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLRVVNRLLPYKEFLSDELLDSLRILLKLDPKILDAFLDK 1063 (1386)
T ss_pred HhccccceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHhhcHHHHHHHHHH
Confidence 9999999999999999999999987655 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCcccCccChHHHHHHHHhhhcCCcchHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHhhcCchh
Q 046443 1127 ITQEVSRLVKANATHIRSQMGWRTITSLLSITARHPEASEAGFEALLFIMSDGTHLLPANYVLCIDSARQFAESRVGQAE 1206 (1469)
Q Consensus 1127 Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~~~~~~~~aFe~L~lIi~d~~~l~~~nf~~cVd~l~~F~~q~~~~~~ 1206 (1469)
|...+.+++..++.++++..||.+++.+|..+++||++....|..+...+.|..|++|+||..||+|.+.|++.+.+.+.
T Consensus 1064 i~i~~~~lv~~n~~~v~~~~~w~~~~slL~~~~~h~~a~~~~~~~~l~~m~e~~hl~~~~fe~~v~~~~~fve~~~~~~~ 1143 (1386)
T KOG0928|consen 1064 IAIFVSKLVKANAANVHSKDGWALLFSLLELTARHPEADFLKFYRLLSKMSEASHLTPDNFELYVDCGSTFVEARVGQIM 1143 (1386)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCCchhHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888788899999999999999999999999877788
Q ss_pred hHHHHHHHHHhhhHhhhhhhhhhhhccChhh-hhhhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCC
Q 046443 1207 RSVRALELMSGSVDCLARWGREAKESMGEDE-VAKLSQDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGI 1285 (1469)
Q Consensus 1207 ~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~ 1285 (1469)
+++..++.+......+.||....++...+.+ ..+.+.....+|++|++.++++|++.|++|||+|++.|||+ ..+.++
T Consensus 1144 ~~l~~lde~s~sg~~~~kw~~~~~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~-~~~~~q 1222 (1386)
T KOG0928|consen 1144 RSLSLLDEMSSSGEVLDKWEIEAKNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRI-IGALDQ 1222 (1386)
T ss_pred HhcchhhhhcccccchhHHHHHHhhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHH-HHhhhc
Confidence 9999999998888888899765554433332 22233444669999999999999999999999999999997 548899
Q ss_pred CCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 046443 1286 HLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMKLLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYM 1365 (1469)
Q Consensus 1286 ~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~lLskvFl~~L~~L~~~~~f~~lWl~iLd~~~~~m 1365 (1469)
.+.+..|..||+.|+||+++++++.-...++... .|++|++++.++++|+|++|+..+++.+.|..+|+++|++|++||
T Consensus 1223 ~l~~~~~~~Cf~~vlfpll~~l~~~l~~~~~~~~-~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~ 1301 (1386)
T KOG0928|consen 1223 GLAHSYWNPCFDLVLFPLLTDLLELLSDASEKGN-EMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVLDRMEKLM 1301 (1386)
T ss_pred ccchHHHHHHHHHHhHHHHHHHHHHhcccccccc-hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876433333333 599999999999999999999999999999999999999999999
Q ss_pred HhhccCCcchhHHHHHHHHHHHHHHhhhcCCccccccCCCccchHHHHHHHHHHHhhhhhcccCCCCCCCCcccccCCCC
Q 046443 1366 KVKVRGKKSEKLQEIVPELLKNTLLIMKTRGVLVQRSALGGDSLWELTWLHVNNIVPSLQSEVFPDQDSDQPQLKQSDNG 1445 (1469)
Q Consensus 1366 ~~~~~~~~s~~L~Eav~EsLKN~LlvM~~~gil~~~~~~~~~~lW~~Tw~~i~~~~P~L~~elfp~~~~~~~~~~~~~~~ 1445 (1469)
+...++++++.++|++||.+|||++||++.|++.+.+.-+.+.+|+.||.++++|.|+|+.||||+.+..++++..+++.
T Consensus 1302 ~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw~~~~~~~p~l~~El~~~~e~~~~~~~~~~~~ 1381 (1386)
T KOG0928|consen 1302 RGKTSEETSDKLNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITWERLNKIAPSLRDELFPDTEIDDPKPDEKQPE 1381 (1386)
T ss_pred hcccccchhhhHHhhhhhhhhhhhhhhhccccccCcccccccchHHHHHHHHHhcCchhhhhhCCCCCCCCCCCcccCcc
Confidence 99888888999999999999999999999999988766667889999999999999999999999999999999999998
Q ss_pred CCCcc
Q 046443 1446 GGLVS 1450 (1469)
Q Consensus 1446 ~~~~~ 1450 (1469)
++++|
T Consensus 1382 ~~~~~ 1386 (1386)
T KOG0928|consen 1382 QSTVP 1386 (1386)
T ss_pred CCCCC
Confidence 88875
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
| >KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5307 SEC7 domain proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1848 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd00171 Sec7 Sec7 domain; Domain named after the S | Back alignment and domain information |
|---|
| >PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region [] | Back alignment and domain information |
|---|
| >smart00222 Sec7 Sec7 domain | Back alignment and domain information |
|---|
| >KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal | Back alignment and domain information |
|---|
| >KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins | Back alignment and domain information |
|---|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1469 | ||||
| 1r8m_E | 203 | Sec7 Domain Of The Arf Exchange Factor Arno With Br | 3e-41 | ||
| 1r8q_E | 203 | Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A | 6e-41 | ||
| 1r8s_E | 203 | Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain C | 2e-40 | ||
| 2r09_A | 347 | Crystal Structure Of Autoinhibited Form Of Grp1 Arf | 4e-40 | ||
| 1bc9_A | 200 | Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average | 4e-40 | ||
| 4a4p_A | 192 | Crystal Structure Of The Sec7 Domain From Human Cyt | 4e-40 | ||
| 2r0d_A | 347 | Crystal Structure Of Autoinhibited Form Of Grp1 Arf | 9e-40 | ||
| 3ltl_A | 211 | Crystal Structure Of Human Big1 Sec7 Domain Length | 2e-39 | ||
| 1pbv_A | 195 | Sec7 Domain Of The Exchange Factor Arno Length = 19 | 5e-38 | ||
| 3l8n_A | 202 | Crystal Structure Of A Domain Of Brefeldin A-Inhibi | 5e-34 | ||
| 1xsz_A | 356 | The Structure Of Ralf Length = 356 | 4e-28 | ||
| 1xt0_B | 203 | The Structure Of N-Terminal Sec7 Domain Of Ralf Len | 5e-26 | ||
| 1re0_B | 221 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 3e-24 | ||
| 1ku1_A | 230 | Crystal Structure Of The Sec7 Domain Of Yeast Gea2 | 7e-24 |
| >pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin A- Sensitizing Mutations Length = 203 | Back alignment and structure |
|
| >pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A Sec7 Domain Length = 203 | Back alignment and structure |
| >pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying The Mutation Of The Catalytic Glutamate To Lysine Length = 203 | Back alignment and structure |
| >pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347 | Back alignment and structure |
| >pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average Structure Length = 200 | Back alignment and structure |
| >pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1 Length = 192 | Back alignment and structure |
| >pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347 | Back alignment and structure |
| >pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain Length = 211 | Back alignment and structure |
| >pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno Length = 195 | Back alignment and structure |
| >pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited Guanine Nucleotide-Exchange Protein 2 (Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human). Northeast Structural Genomics Consortium Target Id Hr5562a Length = 202 | Back alignment and structure |
| >pdb|1XSZ|A Chain A, The Structure Of Ralf Length = 356 | Back alignment and structure |
| >pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf Length = 203 | Back alignment and structure |
| >pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 221 | Back alignment and structure |
| >pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2 Length = 230 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347 | Back alignment and structure |
|---|
Score = 301 bits (773), Expect = 3e-92
Identities = 104/297 (35%), Positives = 149/297 (50%), Gaps = 23/297 (7%)
Query: 551 DPNHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTA 610
+H +R ++ +G FN DPKKG++FL LL P+ VA F
Sbjct: 4 HHHHHGSTTQR----NAQIAMGRKKFNMDPKKGIQFLIENDLLQS--SPEDVAQFLYKGE 57
Query: 611 GLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVL 670
GL+K ++GD+LG D+F ++VL F +F D+NL ALR FL +FRLPGE+QKI R++
Sbjct: 58 GLNKTVIGDYLGERDDFNIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMM 117
Query: 671 EAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGN 730
EAF+ RY +P + + D +LS+++IMLNT HN V+ K T E FI NR IN G
Sbjct: 118 EAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNRGINEGG 177
Query: 731 DLPREFLSELYHSICKNEIRTTPEQG--VGFPEMTPSRWIDLM-----HKSKKTAPFIVA 783
DLP E L LY SI + + G + + P R L+ K+ K FI+
Sbjct: 178 DLPEELLRNLYESIKNEPFKIPEDDGNDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILT 237
Query: 784 DSKAYL-----DHDMFAIMSGPTIAAISVVFEHAEHE-EVYQTCIDGFLAVAKISAC 834
D+ Y D + I+ ++ V + E+Y G + I AC
Sbjct: 238 DNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQV----IKAC 290
|
| >1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Length = 203 | Back alignment and structure |
|---|
| >3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} PDB: 3l8n_A 3swv_A Length = 211 | Back alignment and structure |
|---|
| >1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Length = 356 | Back alignment and structure |
|---|
| >1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* Length = 230 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1469 | |||
| 1r8s_E | 203 | ARNO; protein transport/exchange factor, protein t | 100.0 | |
| 3ltl_A | 211 | Brefeldin A-inhibited guanine nucleotide-exchange | 100.0 | |
| 1ku1_A | 230 | ARF guanine-nucleotide exchange factor 2; SEC7 dom | 100.0 | |
| 1xsz_A | 356 | Guanine nucleotide exchange protein; ARF guanine n | 100.0 | |
| 2r09_A | 347 | Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph | 100.0 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 85.19 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 81.59 |
| >1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-59 Score=504.06 Aligned_cols=194 Identities=43% Similarity=0.759 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcC
Q 046443 560 RRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTF 639 (1469)
Q Consensus 560 ~~~k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~f 639 (1469)
++.|++|+.+..|+.+||+|||+||+||+++|++++ +|++||+||+.+++|||++||+|||++++|+.+||++|++.|
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~--~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~f 84 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQN--TPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLH 84 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCS--SHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHhhCHHHHHHHHHHCCCCCC--CHHHHHHHHHHCcCcCHHHHHHHHhccchHHHHHHHHHHHhc
Confidence 456788999999999999999999999999999986 899999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhccccccccCCCCHHHH
Q 046443 640 DFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDF 719 (1469)
Q Consensus 640 df~~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F 719 (1469)
||+|++||+|||.||.+||||||+|+||||||+||+|||+|||++|.|+|+||+|||||||||||+|||++|+|||+++|
T Consensus 85 dF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~F 164 (203)
T 1r8s_E 85 EFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERF 164 (203)
T ss_dssp CCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHH
T ss_pred CCCCCcHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhCCcccCCcchHHHHHHHHHHhcccccCcccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCHHHHHHHHHHhhcCccccCCCC
Q 046443 720 IRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQ 755 (1469)
Q Consensus 720 ~~n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~ 755 (1469)
++|+||+|+|+|||+++|+.||++|+++||++++++
T Consensus 165 i~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~ 200 (203)
T 1r8s_E 165 VAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDD 200 (203)
T ss_dssp HHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC-
T ss_pred HHHhhcccCCCCCCHHHHHHHHHHHHhCCCCCccCc
Confidence 999999999999999999999999999999999987
|
| >3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A | Back alignment and structure |
|---|
| >1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* | Back alignment and structure |
|---|
| >1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B | Back alignment and structure |
|---|
| >2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1469 | ||||
| d1r8se_ | 187 | a.118.3.1 (E:) Exchange factor ARNO {Human (Homo s | 3e-78 | |
| d1xsza1 | 197 | a.118.3.1 (A:1-197) RalF, N-terminal domain {Legio | 7e-72 | |
| d1ku1a_ | 211 | a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 | 8e-72 |
| >d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Length = 187 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Sec7 domain family: Sec7 domain domain: Exchange factor ARNO species: Human (Homo sapiens) [TaxId: 9606]
Score = 254 bits (649), Expect = 3e-78
Identities = 84/184 (45%), Positives = 114/184 (61%), Gaps = 2/184 (1%)
Query: 567 RRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDE 626
R++ +G FN DPKKG++FL LL + P+ +A F GL+K +GD+LG +E
Sbjct: 2 RKMAMGRKKFNMDPKKGIQFLVENELLQN--TPEEIARFLYKGEGLNKTAIGDYLGEREE 59
Query: 627 FCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILA 686
+ VLH F +F D+NL ALR FL +FRLPG++QKI R++EAF++RY +P +
Sbjct: 60 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQ 119
Query: 687 NKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICK 746
+ D +LSYS+IMLNTD HN V+ KM E F+ NR IN G DLP E L LY SI
Sbjct: 120 STDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 179
Query: 747 NEIR 750
+
Sbjct: 180 EPFK 183
|
| >d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Length = 197 | Back information, alignment and structure |
|---|
| >d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 211 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1469 | |||
| d1ku1a_ | 211 | ARF guanine-exchange factor 2, Gea2 {Baker's yeast | 100.0 | |
| d1r8se_ | 187 | Exchange factor ARNO {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1xsza1 | 197 | RalF, N-terminal domain {Legionella pneumophila [T | 100.0 |
| >d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Sec7 domain family: Sec7 domain domain: ARF guanine-exchange factor 2, Gea2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.7e-55 Score=470.32 Aligned_cols=188 Identities=36% Similarity=0.602 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhh-hccCCChhHHhhhhcCCchhHHHHHHHHHhcCC
Q 046443 562 RKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFR-YTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFD 640 (1469)
Q Consensus 562 ~k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~-~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fd 640 (1469)
++++|+.+.+|+.+||+|||+||+||+++|+++++ +|++||+||+ .+++|||++||||||++++ .+||++|+++||
T Consensus 8 ~~~rK~~~~~~v~~FN~~pk~Gi~~L~~~~~i~~~-~~~~iA~FL~~~~~~Ldk~~iGeyLg~~~n--~~vL~~y~~~fd 84 (211)
T d1ku1a_ 8 HMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASD-SDKDIAEFLFNNNNRMNKKTIGLLLCHPDK--VSLLNEYIRLFD 84 (211)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCS-SHHHHHHHHHHTTTTSCHHHHHHHHTCGGG--HHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHCCCcCCC-CHHHHHHHHHhcCCCCCHHHHHHHHCCCch--HHHHHHHHhccC
Confidence 46689999999999999999999999999999764 7899999985 6788999999999999876 899999999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCC---------------CCCCCcchHHHHHHHHHHhhhcc
Q 046443 641 FQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSP---------------QILANKDAALLLSYSLIMLNTDQ 705 (1469)
Q Consensus 641 f~~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~---------------~~~~~~d~~~~l~ysiimLntdl 705 (1469)
|+|++||+|||.||.+||||||+|+||||||+||++||+||| .+|.|+|++|+|+||+||||||+
T Consensus 85 f~~~~id~ALR~~l~~f~LPgEaQ~IdRile~Fa~~Y~~~N~~~~~~~~~~~~~~~~~~f~s~d~~y~L~ysiimLnTdl 164 (211)
T d1ku1a_ 85 FSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLNTDL 164 (211)
T ss_dssp CTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHhHHHHhcCCCCcccccccccccccccccCccHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999997 47999999999999999999999
Q ss_pred ccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHhhcCccccC
Q 046443 706 HNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICKNEIRTT 752 (1469)
Q Consensus 706 hn~~~k~~mt~~~F~~n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~ 752 (1469)
|||++|+|||+++|++|+||+|+|+|||+++|++||++|+.+||+||
T Consensus 165 Hnp~vk~kMt~~~Fi~n~rgin~~~d~~~e~L~~iY~~I~~~ei~lP 211 (211)
T d1ku1a_ 165 HNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMP 211 (211)
T ss_dssp TCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC
T ss_pred cCCcccCCCCHHHHHHHHhcCcCCCCCCHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999986
|
| >d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|